Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 26 of 343
Found at i:8771191 original size:14 final size:15
Alignment explanation
Indices: 8771169--8771198 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8771159 GAATATTAAA
8771169 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
8771184 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
8771198 A
1 A
8771199 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:8771333 original size:14 final size:13
Alignment explanation
Indices: 8771296--8771340 Score: 65
Period size: 12 Copynumber: 3.5 Consensus size: 13
8771286 ATAATTATAA
8771296 AACAAGAATTAA-
1 AACAAGAATTAAG
8771308 AACAAGAATTAAG
1 AACAAGAATTAAG
*
8771321 AACACATAATTAAG
1 AACA-AGAATTAAG
8771335 AACAAG
1 AACAAG
8771341 TCAAATATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 12 0.41
13 5 0.17
14 12 0.41
ACGTcount: A:0.62, C:0.11, G:0.11, T:0.16
Consensus pattern (13 bp):
AACAAGAATTAAG
Found at i:8771415 original size:140 final size:140
Alignment explanation
Indices: 8771163--8771437 Score: 496
Period size: 140 Copynumber: 2.0 Consensus size: 140
8771153 ATCCTGGAAT
8771163 ATTAAAACAAGAATTAAGAACACAAAATTAAGAACAAGTCAAATATTTATCATACAATTCAGATA
1 ATTAAAACAAGAATTAAGAACACAAAATTAAGAACAAGTCAAATATTTATCATACAATTCAGATA
* * * *
8771228 ATAATAATAAGATCTGCCTTAGGTTTCATTGCCCTTAGTTATTTAGGGGGTTTAGTTCATAATTA
66 ATAATAACAAGATCCGCCTTAGGTTTCATTCCCCTTAGGTATTTAGGGGGTTTAGTTCATAATTA
8771293 TAAAACAAGA
131 TAAAACAAGA
*
8771303 ATTAAAACAAGAATTAAGAACACATAATTAAGAACAAGTCAAATATTTATCATACAATTCAGATA
1 ATTAAAACAAGAATTAAGAACACAAAATTAAGAACAAGTCAAATATTTATCATACAATTCAGATA
*
8771368 ATAATAACAAGATCCGTCTTAGGTTTCATTCCCCTTAGGTATTTAGGGGGTTTAGTTCATAATTA
66 ATAATAACAAGATCCGCCTTAGGTTTCATTCCCCTTAGGTATTTAGGGGGTTTAGTTCATAATTA
8771433 TAAAA
131 TAAAA
8771438 GAAAACATCT
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 129 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.32
Consensus pattern (140 bp):
ATTAAAACAAGAATTAAGAACACAAAATTAAGAACAAGTCAAATATTTATCATACAATTCAGATA
ATAATAACAAGATCCGCCTTAGGTTTCATTCCCCTTAGGTATTTAGGGGGTTTAGTTCATAATTA
TAAAACAAGA
Found at i:8799172 original size:79 final size:80
Alignment explanation
Indices: 8799074--8799256 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
8799064 TACTCGTTCA
* *
8799074 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
8799137 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
8799154 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
8799218 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
8799233 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
8799257 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:8799256 original size:40 final size:40
Alignment explanation
Indices: 8799072--8799256 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
8799062 GCTACTCGTT
* *
8799072 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
8799112 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
8799152 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
8799191 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
8799232 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
8799257 CATCATTCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:8804210 original size:23 final size:23
Alignment explanation
Indices: 8804180--8804277 Score: 96
Period size: 23 Copynumber: 4.3 Consensus size: 23
8804170 CAGCTTATTG
8804180 GAGCTTACCATTTCAGCTCG-TA
1 GAGCTTACCATTTCAGCTCGATA
* * *
8804202 TGAGTTTA-CTTTTCAGCTAGATA
1 -GAGCTTACCATTTCAGCTCGATA
*
8804225 GAGCTTACAATTTCAGCTCGATA
1 GAGCTTACCATTTCAGCTCGATA
* *
8804248 GAGCTTA-CAGTTTTAGCT-AATA
1 GAGCTTACCA-TTTCAGCTCGATA
8804270 GAGCTTAC
1 GAGCTTAC
8804278 TGTTCATTAG
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
22 27 0.44
23 34 0.56
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (23 bp):
GAGCTTACCATTTCAGCTCGATA
Found at i:8804230 original size:45 final size:45
Alignment explanation
Indices: 8804130--8804277 Score: 158
Period size: 45 Copynumber: 3.2 Consensus size: 45
8804120 CGGCTCATAT
* * *
8804130 GAGCTTACCGATATATCAACTCGTATGAGCTTACTGTTTTCAGCTTATTG
1 GAGCTTACC-AT-T-TCAGCTCGTATGAGCTTAC-GTTTTCAGC-TAATA
*
8804180 GAGCTTACCATTTCAGCTCGTATGAGTTTAC-TTTTCAGCTAGATA
1 GAGCTTACCATTTCAGCTCGTATGAGCTTACGTTTTCAGCTA-ATA
*
8804225 GAGCTTACAATTTCAGCTCG-ATAGAGCTTACAGTTTT-AGCTAATA
1 GAGCTTACCATTTCAGCTCGTAT-GAGCTTAC-GTTTTCAGCTAATA
8804270 GAGCTTAC
1 GAGCTTAC
8804278 TGTTCATTAG
Statistics
Matches: 88, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
44 4 0.05
45 46 0.52
46 5 0.06
47 21 0.24
48 1 0.01
49 2 0.02
50 9 0.10
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (45 bp):
GAGCTTACCATTTCAGCTCGTATGAGCTTACGTTTTCAGCTAATA
Found at i:8807759 original size:118 final size:118
Alignment explanation
Indices: 8807551--8807789 Score: 460
Period size: 118 Copynumber: 2.0 Consensus size: 118
8807541 CCAAACAAGG
*
8807551 CAACACTTAGGACATTATATACATCACATATATCATTTATAAAACATGTAATTCAAGCCAACTTA
1 CAACACTTAGGACATTATATAAATCACATATATCATTTATAAAACATGTAATTCAAGCCAACTTA
*
8807616 ATTGGCCAAGTACCAACAATTACAAGTAAAATCTCATGGCTATAATCATAATT
66 ATTGGCCAAGTACCAACAATTACAAGCAAAATCTCATGGCTATAATCATAATT
8807669 CAACACTTAGGACATTATATAAATCACATATATCATTTATAAAACATGTAATTCAAGCCAACTTA
1 CAACACTTAGGACATTATATAAATCACATATATCATTTATAAAACATGTAATTCAAGCCAACTTA
8807734 ATTGGCCAAGTACCAACAATTACAAGCAAAATCTCATGGCTATAATCATAATT
66 ATTGGCCAAGTACCAACAATTACAAGCAAAATCTCATGGCTATAATCATAATT
8807787 CAA
1 CAA
8807790 GACATACCAA
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 119 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (118 bp):
CAACACTTAGGACATTATATAAATCACATATATCATTTATAAAACATGTAATTCAAGCCAACTTA
ATTGGCCAAGTACCAACAATTACAAGCAAAATCTCATGGCTATAATCATAATT
Found at i:8808695 original size:29 final size:30
Alignment explanation
Indices: 8808636--8808693 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8808626 TCCGAGCCTT
*
8808636 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
8808666 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
8808694 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:8808919 original size:13 final size:13
Alignment explanation
Indices: 8808903--8808934 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8808893 TTTCCAGCAA
8808903 TTATGAATTTATT
1 TTATGAATTTATT
8808916 TTATGAATTTATT
1 TTATGAATTTATT
*
8808929 TGATGA
1 TTATGA
8808935 TGATCAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:8809106 original size:50 final size:50
Alignment explanation
Indices: 8809031--8809218 Score: 288
Period size: 50 Copynumber: 3.8 Consensus size: 50
8809021 TGGGTAAAGA
8809031 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
*
8809081 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
* * * * *
8809131 GTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ACATGAGAAC
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-AG
* *
8809181 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
8809219 TGTTATTATC
Statistics
Matches: 125, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
49 6 0.05
50 119 0.95
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.21
Consensus pattern (50 bp):
GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
Found at i:8816196 original size:29 final size:30
Alignment explanation
Indices: 8816137--8816194 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8816127 TCCGAGCCTT
*
8816137 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
8816167 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
8816195 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:8816424 original size:13 final size:13
Alignment explanation
Indices: 8816406--8816437 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8816396 TTTCCAGCAA
8816406 TTATGAATTTATT
1 TTATGAATTTATT
8816419 TTATGAATTTATT
1 TTATGAATTTATT
*
8816432 TGATGA
1 TTATGA
8816438 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:8816609 original size:56 final size:50
Alignment explanation
Indices: 8816532--8816730 Score: 184
Period size: 50 Copynumber: 3.8 Consensus size: 50
8816522 ATTTGGGTAA
* *
8816532 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATCATGGC-CCTGAGAGTG
1 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCAT--TGGCACC-GAGA-TG
* ** *
8816585 ATGGGGTGCCAGGTGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 A-GAGGT-CC-CCTGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * *
8816638 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCAACACG
1 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
8816688 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTGGCA
8816731 TGTTATTATC
Statistics
Matches: 121, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
50 36 0.30
51 36 0.30
52 4 0.03
53 4 0.03
54 11 0.09
55 4 0.03
56 26 0.21
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:8818603 original size:40 final size:40
Alignment explanation
Indices: 8818524--8818635 Score: 102
Period size: 40 Copynumber: 2.8 Consensus size: 40
8818514 TCTCATTAAA
* * * * *
8818524 CCGAAGCTATCT-CAGTACCGCACACTTAGTTCCACATATAG
1 CCGAAGCTATCTCCA--AACGCACACTAAGTGCTATATATAG
* *
8818565 CTGAAGCTAT-TCCAATTCGCACACTAAGTGCTATATATAG
1 CCGAAGCTATCTCCAA-ACGCACACTAAGTGCTATATATAG
* *
8818605 CCGAAGTTATCTCGAAACGCACACTAAGTGC
1 CCGAAGCTATCTCCAAACGCACACTAAGTGC
8818636 CAAACATAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
39 1 0.02
40 42 0.72
41 15 0.26
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (40 bp):
CCGAAGCTATCTCCAAACGCACACTAAGTGCTATATATAG
Found at i:8835102 original size:75 final size:75
Alignment explanation
Indices: 8834979--8835127 Score: 289
Period size: 75 Copynumber: 2.0 Consensus size: 75
8834969 CAAGAAATGT
*
8834979 CTCCCTAAGAGTATAAGAATTTCAAGATCTTCTTCAAAGTCAAGCATGATAAAGTCAATGGGAAA
1 CTCCCTAAGAGTATAAGAATTTCAAGATCTTCCTCAAAGTCAAGCATGATAAAGTCAATGGGAAA
8835044 AATAAATTGC
66 AATAAATTGC
8835054 CTCCCTAAGAGTATAAGAATTTCAAGATCTTCCTCAAAGTCAAGCATGATAAAGTCAATGGGAAA
1 CTCCCTAAGAGTATAAGAATTTCAAGATCTTCCTCAAAGTCAAGCATGATAAAGTCAATGGGAAA
8835119 AATAAATTG
66 AATAAATTG
8835128 TTTAACCCTT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (75 bp):
CTCCCTAAGAGTATAAGAATTTCAAGATCTTCCTCAAAGTCAAGCATGATAAAGTCAATGGGAAA
AATAAATTGC
Found at i:8839294 original size:37 final size:36
Alignment explanation
Indices: 8839203--8839295 Score: 107
Period size: 37 Copynumber: 2.6 Consensus size: 36
8839193 AGTACACAAG
* * *
8839203 TAATCCAACCGA-AACACAACAAATGATCATGAGAGC
1 TAATCCAACCGATAACAC-GCAAACGATCATAAGAGC
* * *
8839239 TAATCTAATCGATAACACGCTAAACGCTCATAAGAGC
1 TAATCCAACCGATAACACGC-AAACGATCATAAGAGC
8839276 TAATCCAACCGATAACACGC
1 TAATCCAACCGATAACACGC
8839296 CTCGGCACTA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
36 11 0.23
37 36 0.77
ACGTcount: A:0.43, C:0.27, G:0.13, T:0.17
Consensus pattern (36 bp):
TAATCCAACCGATAACACGCAAACGATCATAAGAGC
Found at i:8851340 original size:26 final size:26
Alignment explanation
Indices: 8851301--8851365 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
8851291 AATGATTTTT
8851301 TTCAAAATTTTACC-ATGGATAAAATCG
1 TTCAAAATTTTACCGA-GGATAAAAT-G
* *
8851328 TT-AAAATTTTACCGAGGGTAAAATT
1 TTCAAAATTTTACCGAGGATAAAATG
8851353 TTCAAAATTTTAC
1 TTCAAAATTTTAC
8851366 TGGGTTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 2 0.06
26 29 0.85
27 3 0.09
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (26 bp):
TTCAAAATTTTACCGAGGATAAAATG
Found at i:8855997 original size:12 final size:12
Alignment explanation
Indices: 8855977--8856011 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
8855967 AGGATTGTAA
*
8855977 ATTTTCATTTTC
1 ATTTCCATTTTC
8855989 ATTTCCATTTTC
1 ATTTCCATTTTC
*
8856001 ATTTCTATTTT
1 ATTTCCATTTT
8856012 TGAAAAGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.66
Consensus pattern (12 bp):
ATTTCCATTTTC
Found at i:8858421 original size:31 final size:31
Alignment explanation
Indices: 8858354--8858421 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
8858344 TCACATGCAG
* *
8858354 ATGTGGCCTGCCCGTGTGGGCCGACACGCTT
1 ATGTGGCCTGCCCATGTGGGCCGACACGCCT
*
8858385 GTGTGGCCTGCCCATGTGGGTCC-ACACGCCT
1 ATGTGGCCTGCCCATGTGGG-CCGACACGCCT
8858416 ATGTGG
1 ATGTGG
8858422 GCCACACGGC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 30 0.94
32 2 0.06
ACGTcount: A:0.10, C:0.31, G:0.35, T:0.24
Consensus pattern (31 bp):
ATGTGGCCTGCCCATGTGGGCCGACACGCCT
Found at i:8868296 original size:19 final size:19
Alignment explanation
Indices: 8868274--8868310 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8868264 ACACATGAAG
* *
8868274 TGCATCCTATCACACAAAA
1 TGCATCCCAACACACAAAA
8868293 TGCATCCCAACACACAAA
1 TGCATCCCAACACACAAA
8868311 GTGTATCTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.35, G:0.05, T:0.16
Consensus pattern (19 bp):
TGCATCCCAACACACAAAA
Found at i:8869424 original size:20 final size:20
Alignment explanation
Indices: 8869394--8869441 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
8869384 CTTAATTAGT
*
8869394 TAAATTAATCATG-TTTAAC
1 TAAACTAATCATGCTTTAAC
*
8869413 TAACACTAATCATGCTTTAAT
1 TAA-ACTAATCATGCTTTAAC
8869434 TAAACTAA
1 TAAACTAA
8869442 AGACATCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 14 0.56
21 8 0.32
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.38
Consensus pattern (20 bp):
TAAACTAATCATGCTTTAAC
Found at i:8871324 original size:3 final size:3
Alignment explanation
Indices: 8871316--8871349 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
8871306 AATTCAATTG
8871316 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
8871350 AATTGATTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8883186 original size:5 final size:5
Alignment explanation
Indices: 8883176--8883203 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
8883166 TGTCTTATAA
8883176 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
8883204 TTTCCTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:8883529 original size:20 final size:20
Alignment explanation
Indices: 8883482--8883533 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
8883472 TGGTAAAGTC
*
8883482 AATATTGATAAATCCTTAGA
1 AATATTGGTAAATCCTTAGA
*
8883502 AATATTGGTAAATCGTTAGA
1 AATATTGGTAAATCCTTAGA
* *
8883522 TATTTTGGTAAA
1 AATATTGGTAAA
8883534 AGCTTTTTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.38
Consensus pattern (20 bp):
AATATTGGTAAATCCTTAGA
Found at i:8891334 original size:23 final size:23
Alignment explanation
Indices: 8891306--8891352 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
8891296 AGAGTAATTG
8891306 AAGGAGAATGAAGAGTTAAAAGT
1 AAGGAGAATGAAGAGTTAAAAGT
8891329 AAGGAGAATGAAGAGTTAAAAGT
1 AAGGAGAATGAAGAGTTAAAAGT
8891352 A
1 A
8891353 TACTTTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.53, C:0.00, G:0.30, T:0.17
Consensus pattern (23 bp):
AAGGAGAATGAAGAGTTAAAAGT
Found at i:8899633 original size:125 final size:125
Alignment explanation
Indices: 8899411--8899664 Score: 321
Period size: 125 Copynumber: 2.0 Consensus size: 125
8899401 TGACTATCAG
* * * * * **
8899411 AGACAGCTTCTCGATTCCAGTAATAGATGAGCTATTAGGCAAGCTTGGTCAGGTAATATTTTTCT
1 AGACAACTTCCCGATTCCAGTAATAGAAGAACTATTAGACAAGCTTGGTCAGACAATATTTTTCT
* * * *
8899476 TTAAACTTGACCTTCGATTAGGTTATTATCAAATCCACATGCATAAAGGGGACATAC-ACA
66 CTAAACTTGACATTCGATCAGGTTATCATCAAATCCACATGCATAAAGGGGACAT-CTACA
* * *
8899536 AGACAACTTCCCGATTCCATTAATAGAAGAACTATTAGACAAGCTTGGTTAGACAATGTTTTTCT
1 AGACAACTTCCCGATTCCAGTAATAGAAGAACTATTAGACAAGCTTGGTCAGACAATATTTTTCT
* *** *
8899601 CTAAACTTGACATTCGATCATGTTATCATCAAATCTGTATGCATGAAGGGGACATCTACA
66 CTAAACTTGACATTCGATCAGGTTATCATCAAATCCACATGCATAAAGGGGACATCTACA
8899661 AGAC
1 AGAC
8899665 CAATTTTCGG
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
124 1 0.01
125 108 0.99
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (125 bp):
AGACAACTTCCCGATTCCAGTAATAGAAGAACTATTAGACAAGCTTGGTCAGACAATATTTTTCT
CTAAACTTGACATTCGATCAGGTTATCATCAAATCCACATGCATAAAGGGGACATCTACA
Found at i:8903806 original size:15 final size:14
Alignment explanation
Indices: 8903782--8903813 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
8903772 TCACTCTTAG
8903782 TTTCACTAACCCAA
1 TTTCACTAACCCAA
8903796 TTTCTACTAACCCAA
1 TTTC-ACTAACCCAA
8903811 TTT
1 TTT
8903814 TTTGGGTGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (14 bp):
TTTCACTAACCCAA
Found at i:8918474 original size:16 final size:16
Alignment explanation
Indices: 8918455--8918499 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
8918445 TAGTAATTTT
8918455 AATGTTAAAGGACTAA
1 AATGTTAAAGGACTAA
8918471 AATGTTAAAGTGA-TAA
1 AATGTTAAAG-GACTAA
*
8918487 AAT-TAAAAGGACT
1 AATGTTAAAGGACT
8918500 TGATGTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 2 0.08
15 6 0.23
16 16 0.62
17 2 0.08
ACGTcount: A:0.51, C:0.04, G:0.18, T:0.27
Consensus pattern (16 bp):
AATGTTAAAGGACTAA
Found at i:8919175 original size:45 final size:45
Alignment explanation
Indices: 8919124--8919441 Score: 342
Period size: 45 Copynumber: 7.1 Consensus size: 45
8919114 ATTGAATAAA
* **
8919124 ACCATAGTTGAAAGATGTTATGGCATCAT-AGTGGAAACGAGTAAG
1 ACCATAGCTGAAAGATGTTATGGCATCATGA-TTTAAACGAGTAAG
* * *
8919169 AACATAGCTGAAAGATGTTATGACATCATGATTTTAACGAGTAAG
1 ACCATAGCTGAAAGATGTTATGGCATCATGATTTAAACGAGTAAG
8919214 ACCATAGCTGAAAG-TCGTTATGGCATCATGATTTAAA-GAGTAAG
1 ACCATAGCTGAAAGAT-GTTATGGCATCATGATTTAAACGAGTAAG
** *
8919258 ACCATAGCTGAAAGACATTATGGCATCATGATTTTAAC-AGTAAG
1 ACCATAGCTGAAAGATGTTATGGCATCATGATTTAAACGAGTAAG
* * *
8919302 CCCATAGCTGAAAGATATTATGGCATCATGATTTTAACGAGTAAG
1 ACCATAGCTGAAAGATGTTATGGCATCATGATTTAAACGAGTAAG
* * * *
8919347 ACCATAGCT-AGAAGACGTTATAGCATCACGATTCT-AACGCGTAAG
1 ACCATAGCTGA-AAGATGTTATGGCATCATGATT-TAAACGAGTAAG
* * * * * * * *
8919392 ACCATATCTGAAAGGTGCTGTGGCATCATGAATCAGACGAATAAG
1 ACCATAGCTGAAAGATGTTATGGCATCATGATTTAAACGAGTAAG
8919437 ACCAT
1 ACCAT
8919442 GATTGAAAAA
Statistics
Matches: 232, Mismatches: 32, Indels: 18
0.82 0.11 0.06
Matches are distributed among these distances:
44 84 0.36
45 145 0.62
46 3 0.01
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (45 bp):
ACCATAGCTGAAAGATGTTATGGCATCATGATTTAAACGAGTAAG
Found at i:8933545 original size:21 final size:22
Alignment explanation
Indices: 8933520--8933560 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8933510 TTTAGACTCA
*
8933520 TTTTATTTTTATTT-TTTTTAC
1 TTTTATTTCTATTTATTTTTAC
8933541 TTTTATTTCTATTTATTTTT
1 TTTTATTTCTATTTATTTTT
8933561 GAAGACTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTATTTCTATTTATTTTTAC
Found at i:8941104 original size:43 final size:43
Alignment explanation
Indices: 8941038--8941126 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 43
8941028 AAATCATACA
* *
8941038 ATGCCAATGTCCTAGACGTGGTCTTACAT-GTAACCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTAC-TCGTAAACACATATCG
*
8941081 ATGCCACTGTCCCAGACAG-GGTCTTACTCGTAAACACATATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACTCGTAAACACATATCG
8941124 ATG
1 ATG
8941127 TCATGGTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
42 1 0.02
43 39 0.95
44 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACTCGTAAACACATATCG
Found at i:8953024 original size:43 final size:44
Alignment explanation
Indices: 8952855--8953025 Score: 140
Period size: 43 Copynumber: 4.0 Consensus size: 44
8952845 ACATAGGATC
*
8952855 CGATATATG-TTTTCATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATATGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
* * * * **
8952898 CGACT-TATGATTTACATGTAAGACCATGCCTAGGACATCAGCAT
1 CGA-TATATGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
* * ** *
8952942 C-ATATTTGATTT-CA-ATAAGACCTTGTCTGGGATAG-TGGCAT
1 CGATATATGATTTACATGTAAGACCACGTCTGGGA-CGTTGGCAT
* * *
8952983 CGATATTTG-TTTACATGCAAGACCACATCTGGGACGTTGGCAT
1 CGATATATGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
8953026 TGTACAAGCT
Statistics
Matches: 98, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
41 22 0.22
42 13 0.13
43 34 0.35
44 29 0.30
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (44 bp):
CGATATATGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:8954868 original size:21 final size:21
Alignment explanation
Indices: 8954843--8954905 Score: 126
Period size: 21 Copynumber: 3.0 Consensus size: 21
8954833 ATGGGAGTTG
8954843 TATATTTAGGTTCAACACTTA
1 TATATTTAGGTTCAACACTTA
8954864 TATATTTAGGTTCAACACTTA
1 TATATTTAGGTTCAACACTTA
8954885 TATATTTAGGTTCAACACTTA
1 TATATTTAGGTTCAACACTTA
8954906 GCTTGATTGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (21 bp):
TATATTTAGGTTCAACACTTA
Found at i:8962877 original size:27 final size:26
Alignment explanation
Indices: 8962847--8962920 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 26
8962837 CCCCTAGTTG
*
8962847 TAAAATTACCAAAGTACCCCCGGTTTA
1 TAAAATTACCAAA-TACCCCCGATTTA
* * *
8962874 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTA-CCAAATACCCCCGATTTA
8962901 TAAAATTACCGAAATACCCC
1 TAAAATTACC-AAATACCCC
8962921 TGTAAGGTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.05
27 32 0.82
28 5 0.13
ACGTcount: A:0.39, C:0.26, G:0.08, T:0.27
Consensus pattern (26 bp):
TAAAATTACCAAATACCCCCGATTTA
Found at i:8962930 original size:27 final size:27
Alignment explanation
Indices: 8962904--8963475 Score: 755
Period size: 27 Copynumber: 21.2 Consensus size: 27
8962894 CGATTTGTAA
* *
8962904 AATTACCGAAATACCCCTGTAAGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAG
*
8962931 AATTACTGAAATACCCCTGTAAGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAG
8962958 AATTACTGAAATACCCCTGT-AGAGTAG
1 AATTACTGAAATACCCCTGTAAG-GTAG
8962985 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
*
8963012 AATTA-TCGAAATACCCCTGTAAGGTAC
1 AATTACT-GAAATACCCCTGTAAGGTAG
*
8963039 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* * *
8963066 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* *
8963093 AATTACTAAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
*
8963120 AATTACCG-AATACCCCTGT-AGTGTAG
1 AATTACTGAAATACCCCTGTAAG-GTAG
8963146 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* * *
8963173 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAG
8963200 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* * *
8963227 AATTACTAAAATACCCCTATATGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* *
8963254 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
*
8963281 AATTA-TCGAAATATCCCTGTAAGGTAG
1 AATTACT-GAAATACCCCTGTAAGGTAG
* * *
8963308 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
*
8963335 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAAGGTAG
*
8963362 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAAGGTAG
* *
8963389 AATTACTGAAATAACCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* *
8963416 AATTACTGAAATACCCTTGTAGGGTAGG
1 AATTACTGAAATACCCCTGTAAGGTA-G
*
8963444 AA-TACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
8963470 AATTAC
1 AATTAC
8963476 CGAGAAACCT
Statistics
Matches: 495, Mismatches: 37, Indels: 26
0.89 0.07 0.05
Matches are distributed among these distances:
25 2 0.00
26 28 0.06
27 456 0.92
28 9 0.02
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAAGGTAG
Found at i:8963911 original size:19 final size:19
Alignment explanation
Indices: 8963883--8963947 Score: 63
Period size: 19 Copynumber: 3.8 Consensus size: 19
8963873 CATTCACATT
*
8963883 CTGATTTTGATTCTGTTAC
1 CTGATATTGATTCTGTTAC
8963902 CTGATATTGATTCTG--A-
1 CTGATATTGATTCTGTTAC
8963918 -T--T-TTGATTCTGTTAC
1 CTGATATTGATTCTGTTAC
*
8963933 CTGATACTGATTCTG
1 CTGATATTGATTCTG
8963948 ATTCTGATTC
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
12 9 0.24
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 22 0.59
ACGTcount: A:0.18, C:0.15, G:0.17, T:0.49
Consensus pattern (19 bp):
CTGATATTGATTCTGTTAC
Found at i:8963918 original size:6 final size:6
Alignment explanation
Indices: 8963880--8964010 Score: 92
Period size: 6 Copynumber: 21.3 Consensus size: 6
8963870 TTGCATTCAC
* *
8963880 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * * *
8963929 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTA ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
8963979 ATTCTG ATTCTG ATCCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
8964011 AATGTTTCTT
Statistics
Matches: 100, Mismatches: 12, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
5 7 0.07
6 80 0.80
7 9 0.09
8 3 0.03
9 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:8963918 original size:31 final size:31
Alignment explanation
Indices: 8963880--8963998 Score: 152
Period size: 31 Copynumber: 3.9 Consensus size: 31
8963870 TTGCATTCAC
*
8963880 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTCTGATTCTGTTACCTGATATTG
* *
8963911 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATATTG
* * *
8963942 ATTCTGATTCTGATTCTGTCACCTAAT-TCTA
1 ATTCTGATTCTGATTCTGTTACCTGATAT-TG
*
8963973 ATTCTGATTCTGATTCTGAT-CCTGAT
1 ATTCTGATTCTGATTCTGTTACCTGAT
8963999 TCTAGTTCTG
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
30 5 0.06
31 73 0.94
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATATTG
Found at i:8966232 original size:69 final size:70
Alignment explanation
Indices: 8966100--8966232 Score: 205
Period size: 69 Copynumber: 1.9 Consensus size: 70
8966090 TAGTTTATTA
* * * *
8966100 CTAATTAATTTGCTGCTGTAATGCTGTAAATTAATGGCTATCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTAATGGCTATCCAAATTAGGACAAAATCATGGTA
8966165 CTTAG
66 CTTAG
* *
8966170 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTAATGGCTATCCAAATTAGGACAAAATCATGGT
8966233 GTTATGTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 34 0.60
70 23 0.40
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTAATGGCTATCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:8967063 original size:40 final size:40
Alignment explanation
Indices: 8967007--8967419 Score: 453
Period size: 40 Copynumber: 10.4 Consensus size: 40
8966997 AACTTAAGGT
*
8967007 CCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * *
8967047 CCGCAGGCTAT-ATGCTGGAATTATGTCCGGGCGTAAAGAC
1 CCGCAGGCT-TCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * ** **
8967087 CCGCAGGCTTTGTGCTGGAATTGTATCTGAACTT-AAGGT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * **
8967126 CCGCAGGCTTCATGCTGGAATTGTATCCGGACTT-AAGGT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
*
8967165 CCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* *
8967205 CCGCAGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGAC
1 CCGCAGGCT-TCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * **
8967245 CCGCAGGCTTTGTGCTGGAATTGTATCCGGACTT-AAGGT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* *
8967284 CCGCAGGCTTCGTGCT-GATTTGTATCCGGGCTTAACGAC
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
** *
8967323 CTACAGGCTTCGTGCTGGAATTGTATCTGGGCTTAAAGAC
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * * *
8967363 CCGTAGGCTTCATGCTGGAATTGTATCCTGACTT-AAGAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
**
8967402 CCATAGGCTTCGTGCTGG
1 CCGCAGGCTTCGTGCTGG
8967420 TACTATATTC
Statistics
Matches: 314, Mismatches: 52, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
38 15 0.05
39 125 0.40
40 172 0.55
41 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
Found at i:8967221 original size:118 final size:118
Alignment explanation
Indices: 8967007--8967419 Score: 490
Period size: 118 Copynumber: 3.5 Consensus size: 118
8966997 AACTTAAGGT
* * * * * *
8967007 CCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTAT
1 CCGCAGGCTTCATGCTGGAATTGTATCCGGACTT-AAGATCCGCAGGCT-TCGTGCTGGAATTGT
* * **
8967071 GTCCGGGCGTAAAGACCCGCAGGCTTTGTGCTGGAATTGTATCTGAACTT-AAGGT
64 ATCCGGGCTTAAAGACCCGCAGGC-TTGTGCTGGAATTGTATCTGAACTTAAAGAC
* *
8967126 CCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTAT
1 CCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTAT
* * * **
8967191 CCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGAC
66 CCGGGCTTAAAGACCCGCAGGCT-TGTGCTGGAATTGTATCTGAACTTAAAGAC
** * *
8967245 CCGCAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCT-GATTTGTAT
1 CCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTAT
* ** **
8967309 CCGGGCTTAACGACCTACAGGCTTCGTGCTGGAATTGTATCTGGGCTTAAAGAC
66 CCGGGCTTAAAGACCCGCAGGCTT-GTGCTGGAATTGTATCTGAACTTAAAGAC
* * **
8967363 CCGTAGGCTTCATGCTGGAATTGTATCCTGACTTAAGATCCATAGGCTTCGTGCTGG
1 CCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGG
8967420 TACTATATTC
Statistics
Matches: 255, Mismatches: 34, Indels: 10
0.85 0.11 0.03
Matches are distributed among these distances:
117 3 0.01
118 165 0.65
119 87 0.34
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (118 bp):
CCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTAT
CCGGGCTTAAAGACCCGCAGGCTTGTGCTGGAATTGTATCTGAACTTAAAGAC
Found at i:8967279 original size:158 final size:157
Alignment explanation
Indices: 8966998--8967451 Score: 642
Period size: 158 Copynumber: 2.9 Consensus size: 157
8966988 GTATATCCAA
8966998 ACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
1 ACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
* * *
8967063 GGAATTATGTCCGGGCGTAAAGACCCGCAGGCTTTGTGCTGGAATTGTATCTGAACTTAAGGTCC
66 GGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTGTATCCGAACTTAAGGTCC
8967128 GCAGGCTTCATGCTGGAATTGTATCCGG
131 GCAGGCTTCATGCT-GAATTGTATCCGG
8967156 ACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
1 ACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
*
8967221 GGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCC
66 GGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTGTATCCGAACTTAAGGTCC
* *
8967286 GCAGGCTTCGTGCTGATTTGTATCCGG
131 GCAGGCTTCATGCTGAATTGTATCCGG
* * * * * * *
8967313 GCTTAACGACCTACAGGCTTCGTGCTGGAATTGTATCTGGGCTTAAAGACCCGTAGGCT-TCATG
1 ACTTAAGGTCC-GCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATG
* * * * ** * * * * *
8967377 CTGGAATTGTATCCTGACTT-AAGATCCATAGGCTTCGTGCTGGTACTATATTCGAACTTAAGGT
64 CTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTGTATCCGAACTTAAGGT
*
8967441 CCGTAGGCTTC
129 CCGCAGGCTTC
8967452 GTACTGGTAC
Statistics
Matches: 268, Mismatches: 26, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
157 66 0.25
158 202 0.75
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (157 bp):
ACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
GGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTGTATCCGAACTTAAGGTCC
GCAGGCTTCATGCTGAATTGTATCCGG
Found at i:8967449 original size:118 final size:118
Alignment explanation
Indices: 8967007--8967490 Score: 447
Period size: 118 Copynumber: 4.1 Consensus size: 118
8966997 AACTTAAGGT
* * * ** * * *
8967007 CCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTAT
1 CCGCAGGCTTCATGCTGGAATTGTATCCGGACTT-AAGGTCCGCAGGCT-TCGTGCTGGTATTGT
* * * * * * * * **
8967071 GTCCGGGCGTAAAGACCCGCAGGCTTTGTGCTGGAATTGTATCTGAACTT-AAGGT
64 ATCCGGGCTTAAGGA-CCGTAGGCTTCGTGCTGGAATTATATCCGAGCTTAAAGAC
* *
8967126 CCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTAT
1 CCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGTATTGTAT
* * * *
8967191 CCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGAC
66 CCGGGCTTAAGGA-CCGTAGGCT-TCGTGCTGGAATTATATCCGAGCTTAAAGAC
** *
8967245 CCGCAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGAT-TTGTAT
1 CCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGTATTGTAT
* * * *
8967309 CCGGGCTTAACGACC-TACAGGCTTCGTGCTGGAATTGTATCTGGGCTTAAAGAC
66 CCGGGCTTAAGGACCGT--AGGCTTCGTGCTGGAATTATATCCGAGCTTAAAGAC
* * * ** * *
8967363 CCGTAGGCTTCATGCTGGAATTGTATCCTGACTTAAGATCCATAGGCTTCGTGCTGGTACTATAT
1 CCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGTATTGTAT
* ** * * * * *
8967428 TCGAACTTAAGGTCCGTAGGCTTCGTACTGGTACTATATCCGAGCTTAAAGTC
66 CCGGGCTTAAGGACCGTAGGCTTCGTGCTGGAATTATATCCGAGCTTAAAGAC
*
8967481 CCGTAGGCTT
1 CCGCAGGCTT
8967491 TGCGTTGGTG
Statistics
Matches: 308, Mismatches: 49, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
117 4 0.01
118 201 0.65
119 102 0.33
120 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.29
Consensus pattern (118 bp):
CCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGTATTGTAT
CCGGGCTTAAGGACCGTAGGCTTCGTGCTGGAATTATATCCGAGCTTAAAGAC
Found at i:8967451 original size:39 final size:39
Alignment explanation
Indices: 8967393--8967490 Score: 133
Period size: 39 Copynumber: 2.5 Consensus size: 39
8967383 TTGTATCCTG
* * * *
8967393 ACTTAAGATCCATAGGCTTCGTGCTGGTACTATATTCGA
1 ACTTAAGGTCCGTAGGCTTCGTACTGGTACTATATCCGA
8967432 ACTTAAGGTCCGTAGGCTTCGTACTGGTACTATATCCGA
1 ACTTAAGGTCCGTAGGCTTCGTACTGGTACTATATCCGA
* *
8967471 GCTTAAAGTCCCGTAGGCTT
1 ACTTAAGGT-CCGTAGGCTT
8967491 TGCGTTGGTG
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 42 0.81
40 10 0.19
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (39 bp):
ACTTAAGGTCCGTAGGCTTCGTACTGGTACTATATCCGA
Found at i:8981206 original size:68 final size:69
Alignment explanation
Indices: 8981057--8981191 Score: 227
Period size: 68 Copynumber: 2.0 Consensus size: 69
8981047 CAAGACTAAT
* *
8981057 AACGTCTAATCCTTAGATTGAATAACCGAGACTTTTCTCTAATTAACACTCTAGGGTTGCATTAA
1 AACGTATAATCCCTAGATTGAATAACCGAGACTTTTCTCTAATTAACACTCTAGGGTTGCATTAA
*
8981122 CTAT
66 CTAG
*
8981126 AACGTCTAATCCCTAGATTGAATAACCGAGAC-TTTCTCTAATTAACACTCTAGGGTTGCATTAA
1 AACGTATAATCCCTAGATTGAATAACCGAGACTTTTCTCTAATTAACACTCTAGGGTTGCATTAA
8981190 CT
66 CT
8981192 CGATCTATGG
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
68 34 0.52
69 31 0.48
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.33
Consensus pattern (69 bp):
AACGTATAATCCCTAGATTGAATAACCGAGACTTTTCTCTAATTAACACTCTAGGGTTGCATTAA
CTAG
Found at i:8993427 original size:19 final size:19
Alignment explanation
Indices: 8993392--8993429 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8993382 ATGTAGGGCC
*
8993392 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATTAGGCCCA
8993411 CACG-GCCCATCTAGGCCCA
1 CACGAGCCCAT-TAGGCCCA
8993430 ACGTGGCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.21, C:0.45, G:0.24, T:0.11
Consensus pattern (19 bp):
CACGAGCCCATTAGGCCCA
Found at i:8995448 original size:25 final size:27
Alignment explanation
Indices: 8995419--8995480 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 27
8995409 TTTTACTGTA
8995419 TTTATTATTACAGATATTT-T-AAATT
1 TTTATTATTACAGATATTTATAAAATT
* * *
8995444 TTTATGATTAGATATATTTATAAAATT
1 TTTATTATTACAGATATTTATAAAATT
*
8995471 ATTATTATTA
1 TTTATTATTA
8995481 TAATTATCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 16 0.53
26 1 0.03
27 13 0.43
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (27 bp):
TTTATTATTACAGATATTTATAAAATT
Found at i:9001461 original size:30 final size:30
Alignment explanation
Indices: 9001427--9001487 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
9001417 TCATTAACTC
9001427 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
9001457 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
9001487 A
1 A
9001488 GGATCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:9004574 original size:14 final size:14
Alignment explanation
Indices: 9004555--9004581 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9004545 TTATTTGACT
9004555 TGTTCTTAATTATG
1 TGTTCTTAATTATG
9004569 TGTTCTTAATTAT
1 TGTTCTTAATTAT
9004582 TGTCTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:9008723 original size:23 final size:23
Alignment explanation
Indices: 9008674--9008726 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
9008664 TACTAAAGTC
***
9008674 TAATAAAAATTAAAAAATAGTTT
1 TAATAAAAATTAAAAAATAGAAA
9008697 TAATAAAAATTAAAAACATA-AAA
1 TAATAAAAATTAAAAA-ATAGAAA
9008720 TAATAAA
1 TAATAAA
9008727 TAAATCTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 23 0.88
24 3 0.12
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (23 bp):
TAATAAAAATTAAAAAATAGAAA
Found at i:9026371 original size:46 final size:44
Alignment explanation
Indices: 9026321--9026491 Score: 143
Period size: 46 Copynumber: 3.8 Consensus size: 44
9026311 TGGTTGAGCA
*
9026321 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-GCGAA-G
* ** * *** *
9026367 TCCGAACTCGTTGAGTTCGAGTTC--GTGAAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTT-GAGTCCGAGTTCACT-TATGGAGCGAAG
*
9026409 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGACGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-GCGAA-G
* * *
9026455 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
9026492 GCGGGTTACA
Statistics
Matches: 95, Mismatches: 22, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
41 5 0.05
42 20 0.21
43 4 0.04
44 4 0.04
45 5 0.05
46 52 0.55
47 5 0.05
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.28
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGCGAAG
Found at i:9031562 original size:58 final size:58
Alignment explanation
Indices: 9031495--9031607 Score: 208
Period size: 58 Copynumber: 1.9 Consensus size: 58
9031485 TTAAGTTAAC
*
9031495 ATTGTTGTAAACAAGAACAAAGAACACATAGCAAACATTTTTATATTAAACTAAAGAA
1 ATTGTTGTAAACAAGAACAAAGAACACATAGCAAACATTTTTAGATTAAACTAAAGAA
*
9031553 ATTGTTGTAAGCAAGAACAAAGAACACATAGCAAACATTTTTAGATTAAACTAAA
1 ATTGTTGTAAACAAGAACAAAGAACACATAGCAAACATTTTTAGATTAAACTAAA
9031608 TAAAAGAAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (58 bp):
ATTGTTGTAAACAAGAACAAAGAACACATAGCAAACATTTTTAGATTAAACTAAAGAA
Found at i:9045800 original size:64 final size:65
Alignment explanation
Indices: 9045720--9045891 Score: 188
Period size: 67 Copynumber: 2.7 Consensus size: 65
9045710 AGACATTATG
* *
9045720 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAGACAAAAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTGATGTGTACACCATGTAGACAAAAGAGCTACGAGATAA
* * * * * * *
9045784 ATGTAGCTAGGTCGCATGCGTGGCTCCTGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTGATG-TGTACACCATGTAGACAAAAGAGCTACGAGAT
9045849 AA
64 AA
* * * *
9045851 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGGGTGATACTGATGTGTACACCATGT
9045892 GTACAAGAGA
Statistics
Matches: 87, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
63 9 0.10
64 21 0.24
65 9 0.10
66 17 0.20
67 31 0.36
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (65 bp):
ATGTAGCTAGGTCGCATGGGTGATACTGATGTGTACACCATGTAGACAAAAGAGCTACGAGATAA
Found at i:9058629 original size:19 final size:19
Alignment explanation
Indices: 9058605--9058642 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
9058595 AACATAACAT
*
9058605 CAATAGGCATTCAAACCAA
1 CAATAGGAATTCAAACCAA
9058624 CAATAGGAATTCAAACCAA
1 CAATAGGAATTCAAACCAA
9058643 TCTCAACCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.24, G:0.11, T:0.16
Consensus pattern (19 bp):
CAATAGGAATTCAAACCAA
Found at i:9061614 original size:40 final size:38
Alignment explanation
Indices: 9061550--9061815 Score: 263
Period size: 38 Copynumber: 6.9 Consensus size: 38
9061540 ATTTGATGTG
* *
9061550 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
* * * *
9061590 TATCCGGGCTTAAAAACCCACAGGCTAT-ATGCTAGAATTA
1 TATCCGGG-TT-AAATCCCGCAGGCT-TCGTGCTGGAATTA
*
9061630 TATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
9061668 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* *
9061706 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * * *
9061744 TATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
9061782 TATCTGAGCTTAAAGTCCCGCAGG-TTTGTGCTGG
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGG
9061816 TGACTAGATT
Statistics
Matches: 201, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
37 2 0.01
38 128 0.64
39 18 0.09
40 50 0.25
41 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:9061774 original size:114 final size:117
Alignment explanation
Indices: 9061550--9061816 Score: 339
Period size: 114 Copynumber: 2.3 Consensus size: 117
9061540 ATTTGATGTG
* *
9061550 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGG-AATTATATCCGGGCTTAAAAACCCACAGG
1 TATCCGGG-TTAAAGTCCCGCAGGCT-TGTGCTGGTAATTATATCCGGGCTTAAAAACCCACAGG
* *
9061614 CTATATGCTAGAATTATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAATA
64 CTATATGCTAGAATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATA
*
9061668 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAA-TATATCCGGG-TT-AAATCCCACAGGC
1 TATCCGGGTTAAAGTCCCGCAGGCTT-GTGCTGGTAATTATATCCGGGCTTAAAAACCCACAGGC
* * * *
9061729 T-TCGTGCTGGTATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTA
65 TAT-ATGCTAGAATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATA
* * *
9061782 TATCTGAGCTTAAAGTCCCGCAGGTTTGTGCTGGT
1 TATCCG-GGTTAAAGTCCCGCAGGCTTGTGCTGGT
9061817 GACTAGATTC
Statistics
Matches: 132, Mismatches: 12, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
113 1 0.01
114 62 0.47
115 17 0.13
116 37 0.28
117 7 0.05
118 8 0.06
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (117 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTGTGCTGGTAATTATATCCGGGCTTAAAAACCCACAGGCT
ATATGCTAGAATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATA
Found at i:9076344 original size:28 final size:27
Alignment explanation
Indices: 9076309--9076362 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
9076299 GCCCCTATAC
*
9076309 TTTTATTTTTTTCTT-TTTATTTATTTG
1 TTTTATTTTCTTCTTCTTT-TTTATTTG
9076336 TTTTCATTTTCTTCTTCTTTTTTATTT
1 TTTT-ATTTTCTTCTTCTTTTTTATTT
9076363 TTCTCTCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 17 0.71
29 3 0.12
ACGTcount: A:0.09, C:0.09, G:0.02, T:0.80
Consensus pattern (27 bp):
TTTTATTTTCTTCTTCTTTTTTATTTG
Found at i:9076362 original size:18 final size:20
Alignment explanation
Indices: 9076336--9076373 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
9076326 TATTTATTTG
9076336 TTTTCA-TTTTCT-TCTTCT
1 TTTTCATTTTTCTCTCTTCT
*
9076354 TTTTTATTTTTCTCTCTTCT
1 TTTTCATTTTTCTCTCTTCT
9076374 CATATTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 6 0.35
20 6 0.35
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTCATTTTTCTCTCTTCT
Found at i:9078115 original size:241 final size:241
Alignment explanation
Indices: 9077692--9078173 Score: 964
Period size: 241 Copynumber: 2.0 Consensus size: 241
9077682 ATTTAAAAAA
9077692 ATTAACTTCTTATAATAAATTCAAATTAGGTATGGATTTTAAGCATTCAAGTCGAGTTCTTTTAG
1 ATTAACTTCTTATAATAAATTCAAATTAGGTATGGATTTTAAGCATTCAAGTCGAGTTCTTTTAG
9077757 CTTCAATTTCATGTTATTTCGAGTCTAGATTGTTTTGAGTAATTTTCAGGTTCTTATAGAACATA
66 CTTCAATTTCATGTTATTTCGAGTCTAGATTGTTTTGAGTAATTTTCAGGTTCTTATAGAACATA
9077822 TTTAGGATGTTGACATTTTATAGTCGGTTATGTACTACTCTTTCTTATTTTATTAAGTTCATTTA
131 TTTAGGATGTTGACATTTTATAGTCGGTTATGTACTACTCTTTCTTATTTTATTAAGTTCATTTA
9077887 GTATAATTTGATTGTTTCTAATCGATCTACTTCTCTAAATGTGTAT
196 GTATAATTTGATTGTTTCTAATCGATCTACTTCTCTAAATGTGTAT
9077933 ATTAACTTCTTATAATAAATTCAAATTAGGTATGGATTTTAAGCATTCAAGTCGAGTTCTTTTAG
1 ATTAACTTCTTATAATAAATTCAAATTAGGTATGGATTTTAAGCATTCAAGTCGAGTTCTTTTAG
9077998 CTTCAATTTCATGTTATTTCGAGTCTAGATTGTTTTGAGTAATTTTCAGGTTCTTATAGAACATA
66 CTTCAATTTCATGTTATTTCGAGTCTAGATTGTTTTGAGTAATTTTCAGGTTCTTATAGAACATA
9078063 TTTAGGATGTTGACATTTTATAGTCGGTTATGTACTACTCTTTCTTATTTTATTAAGTTCATTTA
131 TTTAGGATGTTGACATTTTATAGTCGGTTATGTACTACTCTTTCTTATTTTATTAAGTTCATTTA
9078128 GTATAATTTGATTGTTTCTAATCGATCTACTTCTCTAAATGTGTAT
196 GTATAATTTGATTGTTTCTAATCGATCTACTTCTCTAAATGTGTAT
9078174 TTTCAATTTT
Statistics
Matches: 241, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
241 241 1.00
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (241 bp):
ATTAACTTCTTATAATAAATTCAAATTAGGTATGGATTTTAAGCATTCAAGTCGAGTTCTTTTAG
CTTCAATTTCATGTTATTTCGAGTCTAGATTGTTTTGAGTAATTTTCAGGTTCTTATAGAACATA
TTTAGGATGTTGACATTTTATAGTCGGTTATGTACTACTCTTTCTTATTTTATTAAGTTCATTTA
GTATAATTTGATTGTTTCTAATCGATCTACTTCTCTAAATGTGTAT
Found at i:9087795 original size:43 final size:43
Alignment explanation
Indices: 9087629--9087797 Score: 157
Period size: 43 Copynumber: 3.9 Consensus size: 43
9087619 TATCATACAG
* * * * * * *
9087629 TGCCAACATCCCAGACGTGGGCTTACATGTAATCACATGTCGA
1 TGCCAACGTCCCAGACATGGTCTTACACGAAATCACATATTGA
*
9087672 TGCC-ACTGTCCCAGACAAGGTCTTACAC-AAATCACA-ATTACGA
1 TGCCAAC-GTCCCAGACATGGTCTTACACGAAATCACATATT--GA
* * * *
9087715 TGCCGATGTCCTAGACATGGTCTTACTCGAAATCACATATTGA
1 TGCCAACGTCCCAGACATGGTCTTACACGAAATCACATATTGA
*
9087758 TGCCAACGTCCCAGACGTGGTCTTACACGAGAA-CACATAT
1 TGCCAACGTCCCAGACATGGTCTTACACGA-AATCACATAT
9087798 CGGAAATCCT
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 78 0.76
44 11 0.11
45 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (43 bp):
TGCCAACGTCCCAGACATGGTCTTACACGAAATCACATATTGA
Found at i:9089755 original size:16 final size:16
Alignment explanation
Indices: 9089734--9089802 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
9089724 TTTGGTTCGC
9089734 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
9089750 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
9089766 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
9089783 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
9089799 TGTA
1 TGTA
9089803 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:9089780 original size:33 final size:32
Alignment explanation
Indices: 9089734--9089802 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
9089724 TTTGGTTCGC
9089734 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
9089766 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
9089799 TGTA
1 TGTA
9089803 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:9089867 original size:44 final size:45
Alignment explanation
Indices: 9089783--9089873 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
9089773 GGATTAGAGG
* * *
9089783 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
9089828 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
9089872 TG
1 TG
9089874 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:9090059 original size:18 final size:19
Alignment explanation
Indices: 9090038--9090074 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
9090028 TTATTATTAA
9090038 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
9090056 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
9090075 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:9090133 original size:61 final size:58
Alignment explanation
Indices: 9090068--9090255 Score: 143
Period size: 61 Copynumber: 3.1 Consensus size: 58
9090058 ATAATTTATA
*
9090068 ATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 ATAAAATTCTTAATAATAAATATTCTTATATGAATTT--T-AAATCATAATATATGATACT
* * ** * * *
9090129 ATAAAATATAATTTGAAATAATTAATATT-AAATAT--ATTTT-AATTAAAATATATGAT-TT
1 ATAAAAT-T--CTT--AATAATAAATATTCTTATATGAATTTTAAATCATAATATATGATACT
* *
9090187 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTTTTAAAATCATAATATATAATACT
1 -ATAAAATTCTTAATAATAAATATTCTTATATGAA--TTTT-AAATCATAATATATGATACT
9090249 ATAAAAT
1 ATAAAAT
9090256 ATAATTTAAC
Statistics
Matches: 97, Mismatches: 16, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
54 11 0.11
55 4 0.04
56 2 0.02
57 1 0.01
58 2 0.02
59 25 0.26
61 28 0.29
62 2 0.02
63 4 0.04
64 2 0.02
65 4 0.04
66 12 0.12
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (58 bp):
ATAAAATTCTTAATAATAAATATTCTTATATGAATTTTAAATCATAATATATGATACT
Found at i:9090182 original size:59 final size:58
Alignment explanation
Indices: 9090116--9090301 Score: 166
Period size: 59 Copynumber: 3.1 Consensus size: 58
9090106 CTCAAATCAT
* *
9090116 AATATATGATACTATAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTT-AAATAATTATTATTAAATATATTTTAATAAA
* * * *
9090175 AATATATGAT-TTAATAAAATTCTTAATATTAAAT-ATTCTTATATGAAT-T-TTTTAA-AATCA
1 AATATATGATACT-ATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATATTTTAATAA--A
* **
9090235 TAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAAGTTAATAAA
1 -AATATATGATACTATAAAATATAATTTAA-ATAATTATTATTAAATATATTTTAATAAA
9090295 AATATAT
1 AATATAT
9090302 AATTTATCAT
Statistics
Matches: 100, Mismatches: 13, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
58 6 0.06
59 39 0.39
60 19 0.19
61 31 0.31
62 5 0.05
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (58 bp):
AATATATGATACTATAAAATATAATTTAAATAATTATTATTAAATATATTTTAATAAA
Found at i:9090239 original size:120 final size:120
Alignment explanation
Indices: 9090018--9090307 Score: 447
Period size: 120 Copynumber: 2.4 Consensus size: 120
9090008 TTAATCATAT
9090018 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
9090083 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
9090140 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
**
9090204 TAAATATTCTTATATGAATTTTTTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
9090260 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
9090308 TCATCATACT
Statistics
Matches: 153, Mismatches: 13, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
119 2 0.01
120 108 0.71
121 2 0.01
122 39 0.25
123 2 0.01
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:9097259 original size:18 final size:18
Alignment explanation
Indices: 9097236--9097272 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
9097226 TTGTTATCAC
*
9097236 TCACATATTTCTGCATGG
1 TCACATATTTCCGCATGG
9097254 TCACATATTTCCGCATGG
1 TCACATATTTCCGCATGG
9097272 T
1 T
9097273 GCAGTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (18 bp):
TCACATATTTCCGCATGG
Found at i:9099354 original size:25 final size:25
Alignment explanation
Indices: 9099285--9099354 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
9099275 ATGACCGGTT
*
9099285 TCAGCTCGTGAGAGCTTACCAATTC
1 TCAGCTCATGAGAGCTTACCAATTC
*
9099310 TCAACTCAT-AGAAGCTTACCAATT-
1 TCAGCTCATGAG-AGCTTACCAATTC
*
9099334 TACAGCTCATGAGAGCATACC
1 T-CAGCTCATGAGAGCTTACC
9099355 GAATCATAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
24 3 0.08
25 33 0.87
26 2 0.05
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (25 bp):
TCAGCTCATGAGAGCTTACCAATTC
Found at i:9101069 original size:26 final size:27
Alignment explanation
Indices: 9101040--9101121 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 27
9101030 CCTTTATCCC
*
9101040 TTTTAAAATTATTTATA-ACTTA-TTTA
1 TTTTAAAATTATATATATA-TTATTTTA
*
9101066 TTTT-AAATTGTATATATATTATTTTA
1 TTTTAAAATTATATATATATTATTTTA
* * *
9101092 TTTTAATA-TATATATGTATTA-TATA
1 TTTTAAAATTATATATATATTATTTTA
9101117 TTTTA
1 TTTTA
9101122 TATTATTATT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
25 21 0.45
26 24 0.51
27 2 0.04
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (27 bp):
TTTTAAAATTATATATATATTATTTTA
Found at i:9101143 original size:23 final size:24
Alignment explanation
Indices: 9101080--9101195 Score: 89
Period size: 26 Copynumber: 4.8 Consensus size: 24
9101070 AAATTGTATA
*
9101080 TATATTA-TTTTATTTTA-A-TAT
1 TATATTACTTATATTTTATATTAT
*
9101101 ATATATGTATTATATATTTTATATTAT
1 -TATAT-TACT-TATATTTTATATTAT
9101128 TAT-TTACTTATATTTTAT-TATAT
1 TATATTACTTATATTTTATAT-TAT
*
9101151 TATATTACTTCATATTTCTCTATTAT
1 TATATTACTT-ATATTT-TATATTAT
* *
9101177 CATATTAATATATATTTTA
1 TATATTACT-TATATTTTA
9101196 ACATATATCA
Statistics
Matches: 77, Mismatches: 6, Indels: 19
0.75 0.06 0.19
Matches are distributed among these distances:
22 6 0.08
23 18 0.23
24 10 0.13
25 16 0.21
26 22 0.29
27 5 0.06
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (24 bp):
TATATTACTTATATTTTATATTAT
Found at i:9101157 original size:5 final size:5
Alignment explanation
Indices: 9101076--9101157 Score: 55
Period size: 5 Copynumber: 16.4 Consensus size: 5
9101066 TTTTAAATTG
* * * *
9101076 TATA- TATAT TATTT TATTT TA-AT ATATAT ATGTAT TATA- TATTT TATAT
1 TATAT TATAT TATAT TATAT TATAT -TATAT -TATAT TATAT TATAT TATAT
*
9101125 TATTAT T-TACT TATAT TTTAT TATAT TATAT TA
1 TA-TAT TATA-T TATAT TATAT TATAT TATAT TA
9101158 CTTCATATTT
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
4 10 0.16
5 40 0.63
6 13 0.21
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:9101512 original size:21 final size:22
Alignment explanation
Indices: 9101478--9101521 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
9101468 TATTTCAAAA
*
9101478 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
9101499 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
9101521 T
1 T
9101522 ATTATTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:9101987 original size:41 final size:41
Alignment explanation
Indices: 9101942--9102024 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
9101932 TATATATATA
9101942 TGTTAGTTAATGTATGATATTTATGCTATTGTGCTTTTATT
1 TGTTAGTTAATGTATGATATTTATGCTATTGTGCTTTTATT
9101983 TGTTAGTTAATGTATGATATTTATGCTATTGTGCTTTTATT
1 TGTTAGTTAATGTATGATATTTATGCTATTGTGCTTTTATT
9102024 T
1 T
9102025 ACCTATTATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.22, C:0.05, G:0.17, T:0.57
Consensus pattern (41 bp):
TGTTAGTTAATGTATGATATTTATGCTATTGTGCTTTTATT
Found at i:9102025 original size:20 final size:20
Alignment explanation
Indices: 9101959--9102025 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
9101949 TAATGTATGA
9101959 TATTTATGCTATTGTGCTTT
1 TATTTATGCTATTGTGCTTT
* * * * **
9101979 TATTTGTTAGTTAATGT-ATGA
1 TATTT-AT-GCTATTGTGCTTT
9102000 TATTTATGCTATTGTGCTTT
1 TATTTATGCTATTGTGCTTT
9102020 TATTTA
1 TATTTA
9102026 CCTATTATTA
Statistics
Matches: 32, Mismatches: 12, Indels: 6
0.64 0.24 0.12
Matches are distributed among these distances:
19 6 0.19
20 13 0.41
21 7 0.22
22 6 0.19
ACGTcount: A:0.21, C:0.06, G:0.15, T:0.58
Consensus pattern (20 bp):
TATTTATGCTATTGTGCTTT
Found at i:9112572 original size:17 final size:16
Alignment explanation
Indices: 9112552--9112608 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
9112542 ACAGAAAATC
*
9112552 AAAAAAATAAAAAAAG
1 AAAAAAAAAAAAAAAG
9112568 AAAAAAAAAGAAAAAAG
1 AAAAAAAAA-AAAAAAG
* * *
9112585 AGAGAAGAGAAAAAAAG
1 A-AAAAAAAAAAAAAAG
9112602 AGAAAAA
1 A-AAAAA
9112609 TGGAGAGGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
16 8 0.24
17 20 0.61
18 5 0.15
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (16 bp):
AAAAAAAAAAAAAAAG
Found at i:9113834 original size:206 final size:206
Alignment explanation
Indices: 9113472--9114027 Score: 835
Period size: 206 Copynumber: 2.7 Consensus size: 206
9113462 GCAGATCTGG
9113472 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * *
9113537 GATTTGGCTTTCATGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * * **
9113602 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGAAGAGCAGATACATAGTAGATTTGGCCTT
130 AGAACAAATCGAAGTTTGACGTCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCTT
* *
9113667 CAGATGTTTATA
195 CAGATGATTAGA
* * *
9113679 CTGAAGCAGATCCAAGATGATTTGGCATCTTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGCT
* * * *
9113743 GATTTAGCTTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTTGCATCTTTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
9113808 AGAACAAATCGAAGTTTGACGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGACGTCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCTT
9113873 CAGATGATTAGA
195 CAGATGATTAGA
* * * * *
9113885 CTAAAGCAGATCCAAGATGGTTTGGTATCCTGGTGCTTACAAGGAGCAAATCGAAGACATAGCTA
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
9113950 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
9114015 GAACAAATCGAAG
131 GAACAAATCGAAG
9114028 AAGCAGATTT
Statistics
Matches: 312, Mismatches: 35, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
205 1 0.00
206 303 0.97
207 8 0.03
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGACGTCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:9115686 original size:26 final size:27
Alignment explanation
Indices: 9115654--9115718 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
9115644 TATTTATAAC
*
9115654 TTATTTATTTTAA-AT-TGTATATCTA
1 TTATTTATTTTAATATATATATATCTA
*
9115679 TTATTTTATTTTAATATATATATATGTA
1 TTA-TTTATTTTAATATATATATATCTA
*
9115707 TTATATATTTTA
1 TTATTTATTTTA
9115719 TATTATTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 3 0.09
26 10 0.29
27 10 0.29
28 11 0.32
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.62
Consensus pattern (27 bp):
TTATTTATTTTAATATATATATATCTA
Found at i:9115714 original size:17 final size:17
Alignment explanation
Indices: 9115692--9115747 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
9115682 TTTTATTTTA
9115692 ATATA-TATATATGTATT
1 ATATATTATATAT-TATT
*
9115709 ATATATTTTATATTATT
1 ATATATTATATATTATT
* *
9115726 ATTTACTTATATTTTATT
1 ATATA-TTATATATTATT
9115744 ATAT
1 ATAT
9115748 TATATTACTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
17 13 0.41
18 19 0.59
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (17 bp):
ATATATTATATATTATT
Found at i:9115740 original size:23 final size:24
Alignment explanation
Indices: 9115710--9115792 Score: 89
Period size: 26 Copynumber: 3.4 Consensus size: 24
9115700 ATATGTATTA
9115710 TATATTTTATATTATTAT-TTACT
1 TATATTTTATATTATTATATTACT
9115733 TATATTTTAT-TATATTATATTACT
1 TATATTTTATAT-TATTATATTACT
* * *
9115757 TCATATTTTTCTATTATCATATTAAT
1 T-ATA-TTTTATATTATTATATTACT
9115783 ATATATTTTA
1 -TATATTTTA
9115793 ACATATATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
22 1 0.02
23 16 0.32
24 6 0.12
25 7 0.14
26 18 0.36
27 2 0.04
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (24 bp):
TATATTTTATATTATTATATTACT
Found at i:9115754 original size:5 final size:5
Alignment explanation
Indices: 9115677--9115754 Score: 52
Period size: 5 Copynumber: 15.0 Consensus size: 5
9115667 ATTGTATATC
* * * *
9115677 TATTA TTTTA TTTTAA TATATA TATATG TATTA TA-TA TTTTA TATTA
1 TATTA TATTA TATT-A TAT-TA TAT-TA TATTA TATTA TATTA TATTA
*
9115724 TTATT- TACTTA TATTT TATTA TATTA TATTA
1 -TATTA TA-TTA TATTA TATTA TATTA TATTA
9115755 CTTCATATTT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
4 5 0.08
5 35 0.59
6 18 0.31
7 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.63
Consensus pattern (5 bp):
TATTA
Found at i:9115786 original size:49 final size:50
Alignment explanation
Indices: 9115685--9115800 Score: 121
Period size: 49 Copynumber: 2.3 Consensus size: 50
9115675 TCTATTATTT
* *
9115685 TATTTTAATATATATATATGTATTATATATTTTATATTATTATTTACTTA
1 TATTTTAATATATATATATGTATTATATATTTTATATTATCATTTACATA
* * *
9115735 TATTTTATTATAT-TATAT-TACTTCATAT-TTTTCTATTATCATATTAATATA
1 TATTTTAATATATATATATGTA-TT-ATATATTTTATATTATCAT-TT-ACATA
*
9115786 TATTTTAACATATAT
1 TATTTTAATATATAT
9115801 CATTACTTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
48 2 0.04
49 19 0.35
50 18 0.33
51 14 0.26
52 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (50 bp):
TATTTTAATATATATATATGTATTATATATTTTATATTATCATTTACATA
Found at i:9115851 original size:8 final size:8
Alignment explanation
Indices: 9115840--9115868 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
9115830 TTATCACATA
9115840 ATATTTAT
1 ATATTTAT
9115848 ATATTTAT
1 ATATTTAT
9115856 ATATTTAT
1 ATATTTAT
9115864 ATATT
1 ATATT
9115869 ATTTTACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
ATATTTAT
Found at i:9116111 original size:21 final size:22
Alignment explanation
Indices: 9116077--9116120 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
9116067 TATTTCAAAA
*
9116077 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
9116098 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
9116120 T
1 T
9116121 ATTATTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:9124815 original size:26 final size:26
Alignment explanation
Indices: 9124784--9124891 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
9124774 TGAAATGCCC
*
9124784 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
9124810 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
9124836 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
9124862 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
9124888 ATCA
1 ATCA
9124892 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:9126064 original size:20 final size:21
Alignment explanation
Indices: 9126025--9126066 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
9126015 TTCCTCAGTG
9126025 TCGAACACGATCATCCACCAC
1 TCGAACACGATCATCCACCAC
9126046 TCGAACAC-ATCGA-CCACCAC
1 TCGAACACGATC-ATCCACCAC
9126066 T
1 T
9126067 TGATGAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.33, C:0.43, G:0.10, T:0.14
Consensus pattern (21 bp):
TCGAACACGATCATCCACCAC
Found at i:9129295 original size:15 final size:15
Alignment explanation
Indices: 9129277--9129306 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
9129267 TTAGTTCATA
9129277 TAAGCCCATATCTTT
1 TAAGCCCATATCTTT
9129292 TAAGCCCATATCTTT
1 TAAGCCCATATCTTT
9129307 CATTTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40
Consensus pattern (15 bp):
TAAGCCCATATCTTT
Found at i:9134095 original size:49 final size:47
Alignment explanation
Indices: 9133877--9134282 Score: 620
Period size: 47 Copynumber: 8.6 Consensus size: 47
9133867 CCCTTCGGGA
* * * * * *
9133877 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
9133924 CCTGTCACATATATACACTTTCACATTCAT--CA-CGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
9133968 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9134015 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9134062 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
9134111 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9134160 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
9134207 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9134256 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
9134283 TATTCAAATA
Statistics
Matches: 334, Mismatches: 18, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
44 37 0.11
45 1 0.00
46 2 0.01
47 155 0.46
49 139 0.42
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:9134100 original size:96 final size:95
Alignment explanation
Indices: 9133877--9134282 Score: 624
Period size: 96 Copynumber: 4.3 Consensus size: 95
9133867 CCCTTCGGGA
* * * * * * * *
9133877 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
9133941 CTTTCACATTCAT--CA-CGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
*
9133968 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
9134032 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
9134062 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
* *
9134127 ACACTTTCACATTCATCACATTGGCCATTCGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
9134160 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* *
9134225 ACTTTCACATTCATCACATTGGCCATTCGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
9134256 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
9134283 TATTCAAATA
Statistics
Matches: 296, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
91 68 0.23
93 2 0.01
94 20 0.07
96 161 0.54
98 45 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:9137775 original size:40 final size:40
Alignment explanation
Indices: 9137731--9138080 Score: 540
Period size: 40 Copynumber: 8.7 Consensus size: 40
9137721 CCAGCATGAT
* * * * *
9137731 TGCTCTTCGGGACCTAGCCTGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
9137771 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
9137811 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
9137851 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
9137891 TGCTCTTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTC-TTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
9137932 TGCTCTTCGGAAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGG-GACTTAGCCCGGATACATCACTAGCACGAA
*
9137973 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
9138013 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
9138053 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
9138081 GTCGAGACCT
Statistics
Matches: 289, Mismatches: 19, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 4 0.01
40 207 0.72
41 78 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:9138029 original size:162 final size:160
Alignment explanation
Indices: 9137731--9138080 Score: 558
Period size: 162 Copynumber: 2.2 Consensus size: 160
9137721 CCAGCATGAT
* * * * ***
9137731 TGCTCTTCGGGACCTAGCCTGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGAACTTAGCACGGATA
*
9137796 TATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGG
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGG
9137861 GACTTAGCCCGGATACATCACTAGCACGAA
131 GACTTAGCCCGGATACATCACTAGCACGAA
* * *
9137891 TGCTCTTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAACTTAGCCCGGA
1 TGCTC-TTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGG-AACTTAGCACGGA
* *
9137956 TACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC
64 TACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC
9138021 GGGACTTAGCCCGGATACATCACTAGCACGAA
129 GGGACTTAGCCCGGATACATCACTAGCACGAA
9138053 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
9138081 GTCGAGACCT
Statistics
Matches: 174, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
160 9 0.05
161 57 0.33
162 108 0.62
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (160 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGAACTTAGCACGGATA
CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGG
GACTTAGCCCGGATACATCACTAGCACGAA
Found at i:9138159 original size:38 final size:37
Alignment explanation
Indices: 9138134--9138246 Score: 165
Period size: 38 Copynumber: 3.0 Consensus size: 37
9138124 GAATTTTAAT
9138134 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTTA
1 CCGGACATAATCTCTGTACATAGCCATCGGGTC-TTTA
9138172 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTA
1 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTA
* * *
9138209 CCCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 -CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTA
9138247 AACTCAGATT
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
37 5 0.07
38 65 0.93
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (37 bp):
CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTA
Found at i:9140930 original size:49 final size:47
Alignment explanation
Indices: 9140681--9141090 Score: 624
Period size: 47 Copynumber: 8.6 Consensus size: 47
9140671 CCCTTCGGGA
* * * * * *
9140681 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
9140728 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
9140775 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9140822 CTTATCACATATATACACTTTCACATTCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATT-CATCACATCGGCCATTAGGC
*
9140870 CTTATCAACATATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATC-AC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
9140920 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9140968 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
9141015 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9141064 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
9141091 TATTCAAATA
Statistics
Matches: 338, Mismatches: 18, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
46 27 0.08
47 147 0.43
48 43 0.13
49 77 0.23
50 26 0.08
51 18 0.05
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:9141015 original size:95 final size:94
Alignment explanation
Indices: 9140681--9141090 Score: 624
Period size: 95 Copynumber: 4.3 Consensus size: 94
9140671 CCCTTCGGGA
* * * * * * * *
9140681 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
9140746 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
9140775 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
9140840 TTTCACATTCCATCACATCGGCCATTAGGC
66 TTTCACATT-CATCACATCGGCCATTAGGC
*
9140870 CTTATCAACATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTATC-AC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATA
*
9140935 TACACTTTCACATTCATCACAT-GGCCATTCGGC
61 TACACTTTCACATTCATCACATCGGCCATTAGGC
9140968 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
9141033 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
9141064 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
9141091 TATTCAAATA
Statistics
Matches: 296, Mismatches: 13, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
94 65 0.22
95 101 0.34
96 40 0.14
97 2 0.01
98 61 0.21
99 8 0.03
100 19 0.06
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:9145998 original size:18 final size:18
Alignment explanation
Indices: 9145972--9146006 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9145962 TCGTAACGTT
*
9145972 GTGTTGTTTGGAAAACAA
1 GTGTCGTTTGGAAAACAA
*
9145990 GTGTCGTTTTGAAAACA
1 GTGTCGTTTGGAAAACA
9146007 CGTCCTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (18 bp):
GTGTCGTTTGGAAAACAA
Found at i:9146673 original size:25 final size:24
Alignment explanation
Indices: 9146605--9146687 Score: 123
Period size: 24 Copynumber: 3.4 Consensus size: 24
9146595 CTGGAGGCCT
9146605 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
9146629 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTAATAAACTGGGGCAA
9146653 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTT-AATAAACTGGGGCA-A
9146679 AGCCCTTTT
1 AGCCCTTTT
9146688 GCACTTCCTC
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
23 7 0.13
24 24 0.44
25 13 0.24
26 10 0.19
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:9146803 original size:20 final size:20
Alignment explanation
Indices: 9146737--9146793 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
9146727 TTATGAATAC
*
9146737 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
9146757 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
9146777 GTCATGTGCATATCATA
1 ATCATGTGCATATCATA
9146794 TCAACCATGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:9146882 original size:25 final size:25
Alignment explanation
Indices: 9146839--9146886 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
9146829 ATAAGTAAAC
* **
9146839 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGTAAAACAGTTATTTTTA
9146864 CCTAGGGGTAAAACAGTTATTTT
1 CCTAGGGGTAAAACAGTTATTTT
9146887 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (25 bp):
CCTAGGGGTAAAACAGTTATTTTTA
Found at i:9153456 original size:5 final size:5
Alignment explanation
Indices: 9153446--9153473 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
9153436 ACTTAATCAC
9153446 AATAA AATAA AATAA AATAA AATAA AAT
1 AATAA AATAA AATAA AATAA AATAA AAT
9153474 TTCTTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:9164676 original size:43 final size:42
Alignment explanation
Indices: 9164512--9164678 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 42
9164502 CGTACAATGG
* * * *
9164512 CAACGTCCCAGATGTGGTCTTACATGCTATCACATATCAATGC
1 CAACGTCCCAGACGTGGTCTTACACG-AATCACATATCGATGC
*
9164555 C-ACTGTCCCAGACAG-GGTCTTACACGAATCAAATAT-GATGC
1 CAAC-GTCCCAGAC-GTGGTCTTACACGAATCACATATCGATGC
** * * * *
9164596 TGATGTCCCAAACATGGTCTTACACGTAATCATATATCGATGC
1 CAACGTCCCAGACGTGGTCTTACACG-AATCACATATCGATGC
* *
9164639 CAACGTCCTAGACGTGGTCTTACACGAGTACACATATCGA
1 CAACGTCCCAGACGTGGTCTTACACGAAT-CACATATCGA
9164679 AAATCCTATG
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
41 23 0.23
42 22 0.22
43 53 0.54
44 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
CAACGTCCCAGACGTGGTCTTACACGAATCACATATCGATGC
Found at i:9172658 original size:79 final size:79
Alignment explanation
Indices: 9172527--9172674 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 79
9172517 TACAATGCCA
* * *
9172527 ATGTCTCAGACGTGGTCTTACATGCTATCACATATCAATGCTACTATCCCAGACAG-GGTCTTAC
1 ATGTCCCAGACATGGTCTTACACGCTATCACATATCAATGCTACTATCCCAGA-AGTGGTCTTAC
9172591 ACGAATACGATGCTG
65 ACGAATACGATGCTG
* * *
9172606 ATGTCCCAGACATGGTCTTACACG-TAATCATATATCGATGCTAAC-GTCCCAGAAGTGGTCTTA
1 ATGTCCCAGACATGGTCTTACACGCT-ATCACATATCAATGCT-ACTATCCCAGAAGTGGTCTTA
9172669 CACGAA
64 CACGAA
9172675 AACACATATC
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
78 3 0.05
79 55 0.92
80 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (79 bp):
ATGTCCCAGACATGGTCTTACACGCTATCACATATCAATGCTACTATCCCAGAAGTGGTCTTACA
CGAATACGATGCTG
Found at i:9172684 original size:43 final size:43
Alignment explanation
Indices: 9172598--9172685 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
9172588 TACACGAATA
* * * * *
9172598 CGATGCTGATGTCCCAGACATGGTCTTACACGTAATCATATAT
1 CGATGCTAACGTCCCAGACATGGTCTTACACGAAAACACATAT
9172641 CGATGCTAACGTCCCAGA-AGTGGTCTTACACGAAAACACATAT
1 CGATGCTAACGTCCCAGACA-TGGTCTTACACGAAAACACATAT
9172684 CG
1 CG
9172686 GAATCCTATG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 1 0.03
43 38 0.97
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
CGATGCTAACGTCCCAGACATGGTCTTACACGAAAACACATAT
Found at i:9173438 original size:19 final size:19
Alignment explanation
Indices: 9173407--9173443 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
9173397 ACTGCAACGA
9173407 TATCAAAAACGAA-AAAAT
1 TATCAAAAACGAATAAAAT
9173425 TATCAAAAACCGAATAAAA
1 TATCAAAAA-CGAATAAAA
9173444 ACTAACCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.65, C:0.14, G:0.05, T:0.16
Consensus pattern (19 bp):
TATCAAAAACGAATAAAAT
Found at i:9180280 original size:8 final size:8
Alignment explanation
Indices: 9180269--9180307 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
9180259 AGAAAAAATT
9180269 TAAAATAA
1 TAAAATAA
9180277 TAAAATAA
1 TAAAATAA
9180285 TAAAA-AA
1 TAAAATAA
9180292 TAAAATAA
1 TAAAATAA
*
9180300 AAAAATAA
1 TAAAATAA
9180308 AATAGAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 7 0.24
8 22 0.76
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
TAAAATAA
Found at i:9180286 original size:28 final size:28
Alignment explanation
Indices: 9180269--9180332 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 28
9180259 AGAAAAAATT
*
9180269 TAAAATAATAAAATAATAAAAAATAAAA
1 TAAAAAAATAAAATAATAAAAAATAAAA
9180297 TAAAAAAATAAAATAGA-ATAAAAATAAAAA
1 TAAAAAAATAAAATA-ATA-AAAAAT-AAAA
9180327 TAAAAA
1 TAAAAA
9180333 CTAAAAAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 15 0.47
29 7 0.22
30 10 0.31
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.19
Consensus pattern (28 bp):
TAAAAAAATAAAATAATAAAAAATAAAA
Found at i:9180289 original size:23 final size:23
Alignment explanation
Indices: 9180255--9180341 Score: 77
Period size: 23 Copynumber: 3.6 Consensus size: 23
9180245 ATATAATAGC
* *
9180255 AATAAGAAAAAATTTAAAATAATAA
1 AATAATAAAAAA--TAAAATAAAAA
9180280 AATAATAAAAAATAAAATAAAAA
1 AATAATAAAAAATAAAATAAAAA
*
9180303 AATAA-AATAGAATAAAAATAAAAA
1 AATAATAA-AAAAT-AAAATAAAAA
*
9180327 TAAAAACTAAAAAAT
1 -AATAA-TAAAAAAT
9180342 GGAAAGAACC
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
22 2 0.04
23 19 0.37
24 10 0.19
25 15 0.29
26 4 0.08
27 2 0.04
ACGTcount: A:0.77, C:0.01, G:0.02, T:0.20
Consensus pattern (23 bp):
AATAATAAAAAATAAAATAAAAA
Found at i:9180296 original size:5 final size:5
Alignment explanation
Indices: 9180275--9180331 Score: 57
Period size: 5 Copynumber: 11.4 Consensus size: 5
9180265 AATTTAAAAT
*
9180275 AATAA AATAA TAA-AA AATAA AAT-A AA-AA AATAA AATAG AATAAA AATAAA
1 AATAA AATAA -AATAA AATAA AATAA AATAA AATAA AATAA AAT-AA AAT-AA
9180325 AATAA AA
1 AATAA AA
9180332 ACTAAAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
4 8 0.18
5 25 0.56
6 12 0.27
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:9183418 original size:14 final size:13
Alignment explanation
Indices: 9183395--9183424 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
9183385 TTTAATAATA
9183395 AAATAAAGAAATG
1 AAATAAAGAAATG
9183408 AAATAAAAGAAATG
1 AAAT-AAAGAAATG
9183422 AAA
1 AAA
9183425 AAGAAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:9183722 original size:39 final size:39
Alignment explanation
Indices: 9183679--9183801 Score: 115
Period size: 39 Copynumber: 3.1 Consensus size: 39
9183669 TTAAGGGCTA
9183679 AATTGATAGAAATTCAAGTTAGAAATGAAATAAGGATTG
1 AATTGATAGAAATTCAAGTTAGAAATGAAATAAGGATTG
* ** ** *** *
9183718 AATTGTAAAGTGATTCATAAGTT--TTATGCTTTAAGGATTA
1 AATTG-ATAGAAATTC--AAGTTAGAAATGAAATAAGGATTG
*
9183758 AATAGATAGAAATTCAAGTTAGAAATGAAATAAGGATTG
1 AATTGATAGAAATTCAAGTTAGAAATGAAATAAGGATTG
9183797 AATTG
1 AATTG
9183802 TAAAGTGATT
Statistics
Matches: 59, Mismatches: 20, Indels: 10
0.66 0.22 0.11
Matches are distributed among these distances:
37 5 0.08
39 27 0.46
40 22 0.37
42 5 0.08
ACGTcount: A:0.45, C:0.03, G:0.20, T:0.33
Consensus pattern (39 bp):
AATTGATAGAAATTCAAGTTAGAAATGAAATAAGGATTG
Found at i:9183753 original size:40 final size:40
Alignment explanation
Indices: 9183709--9183833 Score: 121
Period size: 40 Copynumber: 3.1 Consensus size: 40
9183699 AGAAATGAAA
9183709 TAAGGATTGAATTGTAAAGTGATTCATAAGTTTTATGCTT
1 TAAGGATTGAATTGTAAAGTGATTCATAAGTTTTATGCTT
* * * ** ** ***
9183749 TAAGGATTAAATAG-ATAGAAATTC--AAGTTAGAAATGAAA
1 TAAGGATTGAATTGTAAAGTGATTCATAAGTT--TTATGCTT
9183788 TAAGGATTGAATTGTAAAGTGATTCATAAGTTTTATGCTT
1 TAAGGATTGAATTGTAAAGTGATTCATAAGTTTTATGCTT
9183828 TAAGGA
1 TAAGGA
9183834 CTAAATTGAA
Statistics
Matches: 60, Mismatches: 20, Indels: 10
0.67 0.22 0.11
Matches are distributed among these distances:
37 5 0.08
39 22 0.37
40 28 0.47
42 5 0.08
ACGTcount: A:0.40, C:0.04, G:0.20, T:0.36
Consensus pattern (40 bp):
TAAGGATTGAATTGTAAAGTGATTCATAAGTTTTATGCTT
Found at i:9183768 original size:79 final size:79
Alignment explanation
Indices: 9183669--9183839 Score: 315
Period size: 79 Copynumber: 2.2 Consensus size: 79
9183659 AAATGATGAA
* *
9183669 TTAAGGGCTAAATTGATAGAAATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGATTC
1 TTAAGGACTAAATAGATAGAAATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGATTC
9183734 ATAAGTTTTATGCT
66 ATAAGTTTTATGCT
*
9183748 TTAAGGATTAAATAGATAGAAATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGATTC
1 TTAAGGACTAAATAGATAGAAATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGATTC
9183813 ATAAGTTTTATGCT
66 ATAAGTTTTATGCT
9183827 TTAAGGACTAAAT
1 TTAAGGACTAAAT
9183840 TGAAAGAATT
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 88 1.00
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.34
Consensus pattern (79 bp):
TTAAGGACTAAATAGATAGAAATTCAAGTTAGAAATGAAATAAGGATTGAATTGTAAAGTGATTC
ATAAGTTTTATGCT
Found at i:9184748 original size:10 final size:10
Alignment explanation
Indices: 9184735--9184769 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
9184725 GGGTGAATTT
*
9184735 GAATTGAATT
1 GAATTGAATG
9184745 GAATTGAATG
1 GAATTGAATG
*
9184755 GAATGGAATG
1 GAATTGAATG
9184765 GAATT
1 GAATT
9184770 ATGATTAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.31
Consensus pattern (10 bp):
GAATTGAATG
Found at i:9185242 original size:45 final size:45
Alignment explanation
Indices: 9185178--9185372 Score: 257
Period size: 45 Copynumber: 4.3 Consensus size: 45
9185168 CTGTTACCGC
* * *
9185178 TACTGCTACTGTTACCGATTCGGCACCTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCAGCACCTTGTGTGTCGAATATTGT
* *
9185223 TACTGTTATCGTTACCGATTCGGCA-CTGTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCAGCACCT-TGTGTGTCGAATATTGT
* *
9185268 TACTGTTACCGCTACCGATTCAGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCAGCACCTTGTGTGTCGAATATTGT
* * * * *
9185313 TACTGTTACCATTACCGATTCAGCTCTTTGTGTGTTGAATACTGT
1 TACTGTTACCGTTACCGATTCAGCACCTTGTGTGTCGAATATTGT
*
9185358 TACTGTTACTGTTAC
1 TACTGTTACCGTTAC
9185373 TGTTACTATT
Statistics
Matches: 134, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
44 2 0.01
45 131 0.98
46 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCAGCACCTTGTGTGTCGAATATTGT
Found at i:9185363 original size:6 final size:6
Alignment explanation
Indices: 9185352--9185379 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
9185342 GTGTGTTGAA
9185352 TACTGT TACTGT TACTGT TACTGT TACT
1 TACTGT TACTGT TACTGT TACTGT TACT
9185380 ATTCCGGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (6 bp):
TACTGT
Found at i:9185420 original size:65 final size:64
Alignment explanation
Indices: 9185351--9185475 Score: 169
Period size: 65 Copynumber: 1.9 Consensus size: 64
9185341 TGTGTGTTGA
* * * * *
9185351 ATACTGTTACTGTTACTGTTACTGTTACTATTCCGGATTTGTTCCGATGAGGTACTCTGTGTACC
1 ATACTGCTACTGTTACTATTACTGTTACTATTCCGGATTCG-GCCGATGAGGTACTATGTGTACC
* * *
9185416 ATACTGCTACTGTTACTATTACTGTTCCTGTTCCGGCTTCGGCCGATGAGGTACTATGTG
1 ATACTGCTACTGTTACTATTACTGTTACTATTCCGGATTCGGCCGATGAGGTACTATGTG
9185476 CCGTACTGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
64 17 0.33
65 35 0.67
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.39
Consensus pattern (64 bp):
ATACTGCTACTGTTACTATTACTGTTACTATTCCGGATTCGGCCGATGAGGTACTATGTGTACC
Found at i:9185585 original size:18 final size:18
Alignment explanation
Indices: 9185564--9185736 Score: 156
Period size: 18 Copynumber: 9.6 Consensus size: 18
9185554 TAACTGATTA
9185564 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
9185582 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
* * *
9185600 TTACTAAATAATTGATTA
1 TTACTGAATAATTGACTG
* *
9185618 TTACTGAATAATTGATTA
1 TTACTGAATAATTGACTG
* *
9185636 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
9185654 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
9185672 CTACTGAATAACTT-AATAG
1 TTACTGAATAA-TTGACT-G
*
9185691 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
9185708 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
9185726 TTACTGGATAA
1 TTACTGAATAA
9185737 CCGATCAATT
Statistics
Matches: 128, Mismatches: 19, Indels: 16
0.79 0.12 0.10
Matches are distributed among these distances:
17 15 0.12
18 100 0.78
19 13 0.10
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:9185797 original size:18 final size:18
Alignment explanation
Indices: 9185753--9185816 Score: 83
Period size: 18 Copynumber: 3.6 Consensus size: 18
9185743 AATTGATCGA
* *
9185753 TACTGAATAACTGGTTAT
1 TACTGAATAACTGATTGT
* * *
9185771 TATTCAATAATTGATTGT
1 TACTGAATAACTGATTGT
9185789 TACTGAATAACTGATTGT
1 TACTGAATAACTGATTGT
9185807 TACTGAATAA
1 TACTGAATAA
9185817 ATAATTATTC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (18 bp):
TACTGAATAACTGATTGT
Found at i:9185816 original size:36 final size:36
Alignment explanation
Indices: 9185552--9185816 Score: 194
Period size: 36 Copynumber: 7.1 Consensus size: 36
9185542 AAAGGTATAA
* * * * *
9185552 AATAACTGATTATTACTGAATAATTGACTGTTACCG
1 AATAATTGATTGTTACTGAATAACTGATTGTTACTG
* * * * *
9185588 GATAATTGACTGTTACTAAATAATTGATTATTACTG
1 AATAATTGATTGTTACTGAATAACTGATTGTTACTG
* *
9185624 AATAATTGATTATTACTGAATAACTGATTGTCACTG
1 AATAATTGATTGTTACTGAATAACTGATTGTTACTG
* * * *
9185660 AATGAA-TGACTGCTACTGAATAACTTAATAGTTACTG
1 AAT-AATTGATTGTTACTGAATAAC-TGATTGTTACTG
* *
9185697 AAT-ATCTGATT-TTACTGAATAATTGACTGTTACTGG
1 AATAAT-TGATTGTTACTGAATAACTGATTGTTACT-G
* * * * * *
9185733 ATAACCGATCAATTGATCGATACTGAATAACTGGTTATTATTC
1 ---A---AT-AATTGATTGTTACTGAATAACTGATTGTTACTG
9185776 AATAATTGATTGTTACTGAATAACTGATTGTTACTG
1 AATAATTGATTGTTACTGAATAACTGATTGTTACTG
9185812 AATAA
1 AATAA
9185817 ATAATTATTC
Statistics
Matches: 174, Mismatches: 41, Indels: 28
0.72 0.17 0.12
Matches are distributed among these distances:
35 9 0.05
36 118 0.68
37 20 0.11
39 1 0.01
40 1 0.01
42 2 0.01
43 4 0.02
44 19 0.11
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.38
Consensus pattern (36 bp):
AATAATTGATTGTTACTGAATAACTGATTGTTACTG
Found at i:9188802 original size:20 final size:20
Alignment explanation
Indices: 9188774--9188829 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
9188764 AATTAGAATG
9188774 AAAAA-ATTAAATTAAAAAC
1 AAAAATATTAAATTAAAAAC
*
9188793 AAAAATATTAAAATT-AAAAT
1 AAAAATATT-AAATTAAAAAC
*
9188813 AAAAATAGCTAAATTAA
1 AAAAATA-TTAAATTAA
9188830 TAGAAATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 5 0.16
20 19 0.61
21 7 0.23
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (20 bp):
AAAAATATTAAATTAAAAAC
Done.