Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 260 of 343
Found at i:85811142 original size:20 final size:20
Alignment explanation
Indices: 85811119--85811170 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
85811109 TCATTTCATA
85811119 TAAAACCAAAATACTTCAAG
1 TAAAACCAAAATACTTCAAG
* *
85811139 TAAAACCAAAATAGTTTAAG
1 TAAAACCAAAATACTTCAAG
*
85811159 TAAAGCCAAAAT
1 TAAAACCAAAAT
85811171 GGATAGAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.56, C:0.15, G:0.08, T:0.21
Consensus pattern (20 bp):
TAAAACCAAAATACTTCAAG
Found at i:85811681 original size:22 final size:22
Alignment explanation
Indices: 85811653--85811717 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
85811643 GCACTAATGA
* *
85811653 ACAGAGAGCACTAAGGTGCTAT
1 ACAGAGAGCACTAATGTGCTAG
**
85811675 ACAGAGAGCAAGAATGTGCTAG
1 ACAGAGAGCACTAATGTGCTAG
*
85811697 ACGGAGAGCACTAATGTGCTA
1 ACAGAGAGCACTAATGTGCTA
85811718 ATAATCAGAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.37, C:0.17, G:0.29, T:0.17
Consensus pattern (22 bp):
ACAGAGAGCACTAATGTGCTAG
Found at i:85813620 original size:23 final size:22
Alignment explanation
Indices: 85813586--85813632 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
85813576 GCAAATTAAT
*
85813586 AGAAAAAGAAGAAAGAAAAGAA
1 AGAAAAAAAAGAAAGAAAAGAA
85813608 AGAAAAATAAAGAAAGAAAAGAA
1 AGAAAAA-AAAGAAAGAAAAGAA
85813631 AG
1 AG
85813633 GAGACCGACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (22 bp):
AGAAAAAAAAGAAAGAAAAGAA
Found at i:85826433 original size:17 final size:18
Alignment explanation
Indices: 85826401--85826435 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
85826391 CCATATGGCT
85826401 TGCCCGTATGGGCCCACA
1 TGCCCGTATGGGCCCACA
*
85826419 TGCCCGTGT-GGCCCACA
1 TGCCCGTATGGGCCCACA
85826436 CGACCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.40, G:0.29, T:0.17
Consensus pattern (18 bp):
TGCCCGTATGGGCCCACA
Found at i:85837556 original size:129 final size:129
Alignment explanation
Indices: 85837321--85837582 Score: 463
Period size: 129 Copynumber: 2.0 Consensus size: 129
85837311 AAAGATAGTT
*
85837321 ATTACTAGTACTTTTGGTTCCCTTGAGTATGATATCCCGGTCTTGCGATTACTATACTATTGTTC
1 ATTACTAGTACTTTTGGTTCCCTTGAGTATGATATCCCGGTCTTGCCATTACTATACTATTGTTC
85837386 GATAGGTGCGCTTGCCTTTTCATCGTGATAATAGTTAGTCTAAGTTTGATCTCCATTATAAATA
66 GATAGGTGCGCTTGCCTTTTCATCGTGATAATAGTTAGTCTAAGTTTGATCTCCATTATAAATA
*
85837450 ATTATTAGTACTTTTGGTTCCCTT-AGGTATGATATCCCGGTCTTGCCATTACTATACTATTGTT
1 ATTACTAGTACTTTTGGTTCCCTTGA-GTATGATATCCCGGTCTTGCCATTACTATACTATTGTT
** *
85837514 CGATAGGTGCGCTTGCCTTTTTGTCGTGATAATAGTTAGTCTAGGTTTGATCTCCATTATAAATA
65 CGATAGGTGCGCTTGCCTTTTCATCGTGATAATAGTTAGTCTAAGTTTGATCTCCATTATAAATA
85837579 ATTA
1 ATTA
85837583 ATACTTGTTA
Statistics
Matches: 127, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
128 1 0.01
129 126 0.99
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (129 bp):
ATTACTAGTACTTTTGGTTCCCTTGAGTATGATATCCCGGTCTTGCCATTACTATACTATTGTTC
GATAGGTGCGCTTGCCTTTTCATCGTGATAATAGTTAGTCTAAGTTTGATCTCCATTATAAATA
Found at i:85846651 original size:96 final size:95
Alignment explanation
Indices: 85846487--85846762 Score: 306
Period size: 96 Copynumber: 2.9 Consensus size: 95
85846477 AGGGTGAATT
* * * * *
85846487 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGAGGCCAATGCCATTTCCCA
1 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-ATCATGCCGATGCCATGT-CCA
85846552 GACATGGTCTTACACTAGCTCTCA-TA-ATGTG
64 GACATGGTCTTACACTAGCTCTCATTACAT-TG
* * * * *
85846583 ACCGATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCTA
1 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATC-ATGCCGATGCCATGTCC-A
* *
85846648 GACATGGTTTTACACTGGCTCTCATTACATTG
64 GACATGGTCTTACACTAGCTCTCATTACATTG
* * * *
85846680 -CTGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCATGGTCGATGCCATGTTCCA
1 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAT-GCCGATGCCATG-TCCA
* *
85846744 AACATGGTCTTACATTAGC
64 GACATGGTCTTACACTAGC
85846763 ACACATATCA
Statistics
Matches: 149, Mismatches: 25, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
95 5 0.03
96 135 0.91
97 7 0.05
98 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (95 bp):
ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCATGCCGATGCCATGTCCAGA
CATGGTCTTACACTAGCTCTCATTACATTG
Found at i:85846771 original size:48 final size:48
Alignment explanation
Indices: 85846488--85846772 Score: 260
Period size: 48 Copynumber: 5.9 Consensus size: 48
85846478 GGGTGAATTA
* * *
85846488 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGA-GG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACAT-ATCATGG
* * *
85846536 CCAATGCCAT-TTCCCAGACATGGTCTTACACTAGCTCTCATA--ATGTG
1 CCGATGCCATGTT-CCAAACATGGTCTTACACTAGCTCACATATCATG-G
* * * *
85846583 ACCGATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAAT-G
1 -CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATC-ATGG
* * * * *
85846632 CCGATGCCATG-TCCTAGACATGGTTTTACACTGGCTCTCAT-TACATTG
1 CCGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCACATAT-CATGG
* * * *
85846680 CTGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCATGG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCATGG
* * *
85846728 TCGATGCCATGTTCCAAACATGGTCTTACATTAGCACACATATCA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCA
85846773 CCCAAATGTC
Statistics
Matches: 199, Mismatches: 25, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
45 1 0.01
46 1 0.01
47 8 0.04
48 181 0.91
49 6 0.03
51 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (48 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCATGG
Found at i:85850315 original size:16 final size:17
Alignment explanation
Indices: 85850294--85850335 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
85850284 ATTATTATGT
85850294 ATTAATTTATAA-TATA
1 ATTAATTTATAATTATA
*
85850310 ATTAATTT-TAATTTTA
1 ATTAATTTATAATTATA
85850326 ATCTAATTTA
1 AT-TAATTTA
85850336 ATTTGGGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 3 0.14
16 13 0.59
17 6 0.27
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTAATTTATAATTATA
Found at i:85850320 original size:22 final size:22
Alignment explanation
Indices: 85850295--85850339 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
85850285 TTATTATGTA
85850295 TTAATTTATAATATAA-TTAATT
1 TTAATTT-TAATATAATTTAATT
*
85850317 TTAATTTTAATCTAATTTAATT
1 TTAATTTTAATATAATTTAATT
85850339 T
1 T
85850340 GGGTTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
TTAATTTTAATATAATTTAATT
Found at i:85860799 original size:9 final size:9
Alignment explanation
Indices: 85860785--85860815 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
85860775 CATGGCACCC
*
85860785 AAAGAATTG
1 AAAGAATTA
85860794 AAAGAATTA
1 AAAGAATTA
85860803 AAAGAATTA
1 AAAGAATTA
85860812 AAAG
1 AAAG
85860816 GGAAATTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.19
Consensus pattern (9 bp):
AAAGAATTA
Found at i:85861243 original size:16 final size:16
Alignment explanation
Indices: 85861218--85861257 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
85861208 TTGATGACAT
*
85861218 TTTGATTTATTCGAAA
1 TTTGAATTATTCGAAA
85861234 TTTGAATTATTCGAAA
1 TTTGAATTATTCGAAA
85861250 TTTGAATT
1 TTTGAATT
85861258 CGAGCATGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (16 bp):
TTTGAATTATTCGAAA
Found at i:85866753 original size:58 final size:57
Alignment explanation
Indices: 85866613--85866754 Score: 158
Period size: 57 Copynumber: 2.5 Consensus size: 57
85866603 TATCGTATTA
** * *
85866613 CAGGATTACCAGTCCAGGCTAAATCCTTTTTGTAACGTATGCTCAAAAGAGCTCAAT
1 CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAAAAGAGATCAAT
* * * * * *
85866670 TAGGATTACCAGTCCAAGCTAAATCCTAATTGTAACATATGTTCGAGAGAGATTATAT
1 CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAAAAGAGATCA-AT
* * *
85866728 CAGGATTACCTGTCCGGGCTGAATCCT
1 CAGGATTACCAGTCCAGGCTAAATCCT
85866755 TTCTATAATG
Statistics
Matches: 69, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
57 45 0.65
58 24 0.35
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (57 bp):
CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAAAAGAGATCAAT
Found at i:85875041 original size:21 final size:22
Alignment explanation
Indices: 85875017--85875069 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
85875007 AAATGAAACA
85875017 ATTAAATTAAAAACAAAAAAT-
1 ATTAAATTAAAAACAAAAAATG
* *
85875038 ATTAAAATAAAAATAAAAAATG
1 ATTAAATTAAAAACAAAAAATG
*
85875060 GTTAAATTAA
1 ATTAAATTAA
85875070 TAGAAATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 19 0.70
22 8 0.30
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (22 bp):
ATTAAATTAAAAACAAAAAATG
Found at i:85883316 original size:31 final size:31
Alignment explanation
Indices: 85883278--85883342 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
85883268 AGAAGAGAAC
85883278 TTGTATCTTGCTTCATTAAAATAGGATTCTT
1 TTGTATCTTGCTTCATTAAAATAGGATTCTT
85883309 TTGTATCTTGCTTCATTAAAATAGGATTCTT
1 TTGTATCTTGCTTCATTAAAATAGGATTCTT
85883340 TTG
1 TTG
85883343 GGCTATCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.25, C:0.12, G:0.14, T:0.49
Consensus pattern (31 bp):
TTGTATCTTGCTTCATTAAAATAGGATTCTT
Found at i:85883945 original size:82 final size:82
Alignment explanation
Indices: 85883794--85883989 Score: 270
Period size: 82 Copynumber: 2.4 Consensus size: 82
85883784 ATAGGTTTAA
* * * * * *
85883794 ACCATAAAATGGTACTTAAACTAT-T-TTTTTTTCAAGTTTCTATTTAAATTTTTTTTTTGGTCG
1 ACCACAAAATGGTACCTAAACTATATCTTTTTTTCAAGTTGCTATTTAAACTTTTTTTTTGGACA
85883857 ACTGATACCTAAACTAT
66 ACTGATACCTAAACTAT
* *
85883874 ACCACAAAATGGTACCTAAACTATATCTTTTTTTCAAGTTGGTATTTCAACTTTTTTTTTGGACA
1 ACCACAAAATGGTACCTAAACTATATCTTTTTTTCAAGTTGCTATTTAAACTTTTTTTTTGGACA
* *
85883939 AGTGATACCTAAATTAT
66 ACTGATACCTAAACTAT
85883956 ACCACAAAATGGTACCTAAACTATAAATCTTTTT
1 ACCACAAAATGGTACCTAAACTAT--ATCTTTTT
85883990 CCCAGGTTTA
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 22 0.22
81 1 0.01
82 71 0.70
84 8 0.08
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (82 bp):
ACCACAAAATGGTACCTAAACTATATCTTTTTTTCAAGTTGCTATTTAAACTTTTTTTTTGGACA
ACTGATACCTAAACTAT
Found at i:85884012 original size:82 final size:82
Alignment explanation
Indices: 85883843--85884043 Score: 226
Period size: 82 Copynumber: 2.4 Consensus size: 82
85883833 CTATTTAAAT
* * * **
85883843 TTTTTTTTTGGTCGACTGATACCTAAACTATACCACAAAATGGTACCTAAACTATATCTTTTTTT
1 TTTTTTTTTGGACAAGTGATACCTAAACTATACCACAAAATGGTACCTAAACTATATCTTTTTCC
** *
85883908 CAAGTTGGTATTTCAAC-
66 CAAGTT-GTAGCTAAACA
*
85883925 TTTTTTTTTGGACAAGTGATACCTAAATTATACCACAAAATGGTACCTAAACTATAAATCTTTTT
1 TTTTTTTTTGGACAAGTGATACCTAAACTATACCACAAAATGGTACCTAAACTAT--ATCTTTTT
*
85883990 CCCAGGTT-TAGCTAAACA
64 CCCAAGTTGTAGCTAAACA
* *
85884008 TTTTTTTTTTGGTTACAAGTGATACATAAAGTATAC
1 -TTTTTTTTTGG--ACAAGTGATACCTAAACTATAC
85884044 TCCAATACCC
Statistics
Matches: 101, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
82 57 0.56
84 24 0.24
86 20 0.20
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.40
Consensus pattern (82 bp):
TTTTTTTTTGGACAAGTGATACCTAAACTATACCACAAAATGGTACCTAAACTATATCTTTTTCC
CAAGTTGTAGCTAAACA
Found at i:85893285 original size:53 final size:54
Alignment explanation
Indices: 85893104--85893310 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
85893094 ATTAGGGTTT
* * * * *
85893104 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* ** ** * * * *
85893158 AAGGAAATTATGTAAGACCATATCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * *
85893213 AAAGAT-CCTATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACC-ATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* *
85893266 AAGGATACCATGTAAGACCATGTCAAGACATGACAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
85893311 AAAAAGGAAA
Statistics
Matches: 121, Mismatches: 29, Indels: 7
0.77 0.18 0.04
Matches are distributed among these distances:
53 44 0.36
54 37 0.31
55 40 0.33
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:85905462 original size:39 final size:39
Alignment explanation
Indices: 85905418--85905494 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 39
85905408 GATGTTTTCA
* *
85905418 AGTATTGTGACATATTCTTAAAGGTTATGTGATTATATG
1 AGTATTGTGACATATGCTTAAAGGTTAGGTGATTATATG
* ** *
85905457 AGTATTGTGATATATGCTTGTATGTTAGGTGATTATAT
1 AGTATTGTGACATATGCTTAAAGGTTAGGTGATTATAT
85905495 AGGTTGTATG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.29, C:0.04, G:0.22, T:0.45
Consensus pattern (39 bp):
AGTATTGTGACATATGCTTAAAGGTTAGGTGATTATATG
Found at i:85913763 original size:46 final size:44
Alignment explanation
Indices: 85913710--85913824 Score: 144
Period size: 46 Copynumber: 2.5 Consensus size: 44
85913700 ATTGTGAGCT
* *
85913710 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGAGACATGCACCGG-CTACGAGA--TAAGCC
*
85913756 AGTGTAAGACATGTCTGAGACATGCACCGGCTACGAGATAAGCT
1 AGTGTAAGACATGTCTGAGACATGCACCGGCTACGAGATAAGCC
85913800 AGTGTAAGACCATGTCT-AGAACATG
1 AGTGTAAGA-CATGTCTGAG-ACATG
85913825 GCATTGGCAT
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
44 16 0.25
45 14 0.22
46 33 0.52
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGAGACATGCACCGGCTACGAGATAAGCC
Found at i:85917686 original size:31 final size:31
Alignment explanation
Indices: 85917648--85917710 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
85917638 AATCTCTCTA
*
85917648 TTTGAGGGATTAATTTGAAAAGTTATCAAGG
1 TTTGAGGGATTAATTTCAAAAGTTATCAAGG
*
85917679 TTTGAGGGATTAATTTCAAAATTTATCAAGG
1 TTTGAGGGATTAATTTCAAAAGTTATCAAGG
85917710 T
1 T
85917711 ATGAAAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (31 bp):
TTTGAGGGATTAATTTCAAAAGTTATCAAGG
Found at i:85925184 original size:20 final size:20
Alignment explanation
Indices: 85925159--85925203 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
85925149 AGGGACTAAA
* *
85925159 ATGAAAAGTTTTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
85925179 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
85925199 ATGAA
1 ATGAA
85925204 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:85929456 original size:25 final size:23
Alignment explanation
Indices: 85929428--85929494 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 23
85929418 AGGCCCTTCA
*
85929428 AATAACTCCCCACAAAGACTTTCTT
1 AATAACTCGCCACAAAG-CTTT-TT
85929453 AATAACAT-GCCACATAAGCTTTTT
1 AATAAC-TCGCCACA-AAGCTTTTT
85929477 AGATAACTCGCCACAAAG
1 A-ATAACTCGCCACAAAG
85929495 GCATTTCAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
24 7 0.19
25 26 0.70
26 4 0.11
ACGTcount: A:0.39, C:0.27, G:0.09, T:0.25
Consensus pattern (23 bp):
AATAACTCGCCACAAAGCTTTTT
Found at i:85929517 original size:50 final size:49
Alignment explanation
Indices: 85929403--85929517 Score: 115
Period size: 50 Copynumber: 2.3 Consensus size: 49
85929393 ACGAATCCTA
*
85929403 AATAATATGTCACATAGGCCCTTCAAATAACTCCCCACAAAGACTTTCTT
1 AATAATATGTCACATAAGCCCTTCAAATAACTCCCCACAAAGACTTTC-T
* * ** * * * *
85929453 AATAACATGCCACATAAGCTTTTTAGATAACTCGCCACAAAGGCATTTC-
1 AATAATATGTCACATAAGCCCTTCAAATAACTCCCCACAAAGAC-TTTCT
85929502 AGATAATATGTCACAT
1 A-ATAATATGTCACAT
85929518 GGGCCTTTCT
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
49 1 0.02
50 47 0.90
51 4 0.08
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.28
Consensus pattern (49 bp):
AATAATATGTCACATAAGCCCTTCAAATAACTCCCCACAAAGACTTTCT
Found at i:85929582 original size:76 final size:76
Alignment explanation
Indices: 85929459--85929602 Score: 202
Period size: 76 Copynumber: 1.9 Consensus size: 76
85929449 TCTTAATAAC
*
85929459 ATGCCACATAAGCTTTTTAGATAACTCGCCACAAAGGCATTTCAGATAATATGTCACATGGGCCT
1 ATGCCACATAAGCTTTTTAGATAACTCGCCACAAAGGCATTTCAGATAATATGTCACATAGGCCT
85929524 TTCTAAACAAT
66 TTCTAAACAAT
* * * *
85929535 ATGCCATATAAG-TTTTTCAGATAACTTGTCACAAA-GCCTTTCTAGATAATATGTCACATAGGC
1 ATGCCACATAAGCTTTTT-AGATAACTCGCCACAAAGGCATTTC-AGATAATATGTCACATAGGC
*
85929598 TTTTC
64 CTTTC
85929603 AGATAACTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
75 11 0.18
76 49 0.82
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.33
Consensus pattern (76 bp):
ATGCCACATAAGCTTTTTAGATAACTCGCCACAAAGGCATTTCAGATAATATGTCACATAGGCCT
TTCTAAACAAT
Found at i:85929602 original size:50 final size:50
Alignment explanation
Indices: 85929486--85929648 Score: 157
Period size: 50 Copynumber: 3.2 Consensus size: 50
85929476 TAGATAACTC
* * ** * *
85929486 GCCACAAAGGCATTTCAGATAA-TATGTCACATGGGCCTTTCTAAACAATAT
1 GCCACATAGGCTTTTCAGATAACT-TGTCACA-AAGCCTTTCTAGATAATAT
* * *
85929537 GCCATATAAGTTTTTCAGATAACTTGTCACAAAGCCTTTCTAGATAATAT
1 GCCACATAGGCTTTTCAGATAACTTGTCACAAAGCCTTTCTAGATAATAT
* * * * **
85929587 GTCACATAGGCTTTTCAGATAACTCGCCATAAAGGTTTTCTAGATAATAT
1 GCCACATAGGCTTTTCAGATAACTTGTCACAAAGCCTTTCTAGATAATAT
*
85929637 GCCACATTGGCT
1 GCCACATAGGCT
85929649 CTGTTTAGTT
Statistics
Matches: 91, Mismatches: 20, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
50 66 0.73
51 24 0.26
52 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (50 bp):
GCCACATAGGCTTTTCAGATAACTTGTCACAAAGCCTTTCTAGATAATAT
Found at i:85929640 original size:25 final size:25
Alignment explanation
Indices: 85929437--85929642 Score: 86
Period size: 25 Copynumber: 8.2 Consensus size: 25
85929427 AAATAACTCC
** *
85929437 CCACAAAGACTTTCTTA-ATAACATG
1 CCACAAAGGTTTTC-TAGATAATATG
* *
85929462 CCACATAAGCTTTT-TAGATAACT-CG
1 CCACA-AAGGTTTTCTAGATAA-TATG
*
85929487 CCACAAAGGCATTTC-AGATAATATG
1 CCACAAAGG-TTTTCTAGATAATATG
* ** * * *
85929512 TCACATGGGCCTTTCTAAACAATATG
1 CCACAAAGG-TTTTCTAGATAATATG
* *
85929538 CCATATAAGTTTTTC-AGATAACT-TG
1 CCACA-AAGGTTTTCTAGATAA-TATG
* **
85929563 TCACAAAGCCTTTCTAGATAATATG
1 CCACAAAGGTTTTCTAGATAATATG
* * *
85929588 TCACATAGGCTTTTC-AGATAACT-CG
1 CCACAAAGG-TTTTCTAGATAA-TATG
*
85929613 CCATAAAGGTTTTCTAGATAATATG
1 CCACAAAGGTTTTCTAGATAATATG
85929638 CCACA
1 CCACA
85929643 TTGGCTCTGT
Statistics
Matches: 132, Mismatches: 34, Indels: 30
0.67 0.17 0.15
Matches are distributed among these distances:
24 20 0.15
25 84 0.64
26 27 0.20
27 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.31
Consensus pattern (25 bp):
CCACAAAGGTTTTCTAGATAATATG
Found at i:85938427 original size:16 final size:16
Alignment explanation
Indices: 85938406--85938464 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
85938396 TTAATCACTT
85938406 TAATATTAAATTAATA
1 TAATATTAAATTAATA
** *
85938422 TAATATTTATCTTGATA
1 TAATA-TTAAATTAATA
* *
85938439 -AATATTATATTAATT
1 TAATATTAAATTAATA
85938454 TAATATTAAAT
1 TAATATTAAAT
85938465 CTTATTAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
15 8 0.24
16 18 0.53
17 8 0.24
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (16 bp):
TAATATTAAATTAATA
Found at i:85944324 original size:10 final size:10
Alignment explanation
Indices: 85944318--85944352 Score: 70
Period size: 10 Copynumber: 3.5 Consensus size: 10
85944308 TATTTAACCC
85944318 AAATTAATCA
1 AAATTAATCA
85944328 AAATTAATCA
1 AAATTAATCA
85944338 AAATTAATCA
1 AAATTAATCA
85944348 AAATT
1 AAATT
85944353 TGATATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (10 bp):
AAATTAATCA
Found at i:85945118 original size:31 final size:31
Alignment explanation
Indices: 85945083--85945145 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
85945073 TACCCCTATT
85945083 TAGCCAATTTTTCCTAACTTCATCGGATTAG
1 TAGCCAATTTTTCCTAACTTCATCGGATTAG
85945114 TAGCCAATTTTTCCTAACTTCATCGGATTAG
1 TAGCCAATTTTTCCTAACTTCATCGGATTAG
85945145 T
1 T
85945146 TTAGTCTCGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (31 bp):
TAGCCAATTTTTCCTAACTTCATCGGATTAG
Found at i:85950833 original size:16 final size:16
Alignment explanation
Indices: 85950794--85950826 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
85950784 GGAAGATTTC
85950794 CAATGGAATTTGAATT
1 CAATGGAATTTGAATT
85950810 CAATGGAATTTGAATT
1 CAATGGAATTTGAATT
85950826 C
1 C
85950827 TGAGGAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (16 bp):
CAATGGAATTTGAATT
Found at i:85952443 original size:18 final size:18
Alignment explanation
Indices: 85952420--85952459 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
85952410 GGTAAATTTG
*
85952420 TTTTATGAAAACGACGGT
1 TTTTATGAAAACAACGGT
* *
85952438 TTTTATGCAAACAATGGT
1 TTTTATGAAAACAACGGT
85952456 TTTT
1 TTTT
85952460 TCTAAAAACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (18 bp):
TTTTATGAAAACAACGGT
Found at i:85954913 original size:104 final size:104
Alignment explanation
Indices: 85954733--85954956 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
85954723 TGTATATAAA
** * *
85954733 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
85954798 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
85954837 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
85954901 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
85954941 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
85954957 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:85955008 original size:71 final size:72
Alignment explanation
Indices: 85954875--85955026 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
85954865 TCATTGGTGG
* *
85954875 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
85954940 GAGGGGT
66 GAGGGGT
***
85954947 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
85955011 GAGGGGT
66 GAGGGGT
85955018 TGCTAAGTG
1 TGCTAAGTG
85955027 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:85962468 original size:104 final size:104
Alignment explanation
Indices: 85962288--85962511 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
85962278 TGTATATAAA
** * *
85962288 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
85962353 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
85962392 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
85962456 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
85962496 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
85962512 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:85962563 original size:71 final size:72
Alignment explanation
Indices: 85962430--85962581 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
85962420 TCATTGGTGG
* *
85962430 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
85962495 GAGGGGT
66 GAGGGGT
***
85962502 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
85962566 GAGGGGT
66 GAGGGGT
85962573 TGCTAAGTG
1 TGCTAAGTG
85962582 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:85965702 original size:39 final size:39
Alignment explanation
Indices: 85965658--85965735 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
85965648 CTGTAGTTAG
* *
85965658 TACTTTTTGAGCCTATACTGAAATAGTTAGGGACTGAAA
1 TACTTTCTGAGCCTATACTAAAATAGTTAGGGACTGAAA
*
85965697 TACTTTCTGAGGCTATACTAAAATAGTTAGGGACTGAAA
1 TACTTTCTGAGCCTATACTAAAATAGTTAGGGACTGAAA
85965736 CCTCTGAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (39 bp):
TACTTTCTGAGCCTATACTAAAATAGTTAGGGACTGAAA
Found at i:85968319 original size:42 final size:42
Alignment explanation
Indices: 85968213--85968323 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
85968203 TCATTTCAAT
* * *
85968213 GCCATATCGCC-GATATGGTCTTACATGAAATATCATATCGAC
1 GCCATATC-CCAGATATGGTCTTATATGAAATAACATACCGAC
* * * * * *
85968255 GCTATGTCCCTGACATGATCTTATATGAAATAACATACCGAG
1 GCCATATCCCAGATATGGTCTTATATGAAATAACATACCGAC
*
85968297 GCCATATCTCAGATATGGTCTTATATG
1 GCCATATCCCAGATATGGTCTTATATG
85968324 GAATTTTAAT
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
41 2 0.04
42 52 0.96
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTATATGAAATAACATACCGAC
Found at i:85977626 original size:43 final size:43
Alignment explanation
Indices: 85977491--85977611 Score: 197
Period size: 43 Copynumber: 2.8 Consensus size: 43
85977481 ATTTCCGAGA
85977491 TGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATTCTAT
1 TGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATTCTAT
* *
85977534 TGTGATTACATGTAAGATCATGTCTGGGAAATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATTCTAT
* * *
85977577 TGTGATTACGTGTAAGACCATGTCTAGGACATTGG
1 TGTGATTACATGTAAGACCATGTCTGGGAAATTGG
85977612 TATCATTATT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATTCTAT
Found at i:85977679 original size:43 final size:43
Alignment explanation
Indices: 85977490--85977691 Score: 185
Period size: 43 Copynumber: 4.7 Consensus size: 43
85977480 GATTTCCGAG
*
85977490 ATGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATTCTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGAAATTGGCA-TCGAT
* *
85977534 -TGTGATTACATGTAAGATCATGTCTGGGAAATTGGCATTG-T
1 ATGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATCGAT
* * * *
85977575 ATTGTGATTACGTGTAAGACCATGTCTAGGACATTGGTATC-ATT
1 A-TGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATCGA-T
* *** * * * * *
85977619 ATTTGATTTTTTATAAGACCCTGTTTGGGACAGTGGCATCGAT
1 ATGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATCGAT
* * *
85977662 ATGTGATAACATGTAAGACTATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
85977692 TATGACATTG
Statistics
Matches: 124, Mismatches: 29, Indels: 11
0.76 0.18 0.07
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 119 0.96
44 3 0.02
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATCGAT
Found at i:85989520 original size:46 final size:46
Alignment explanation
Indices: 85989301--85989522 Score: 229
Period size: 46 Copynumber: 4.8 Consensus size: 46
85989291 TGTAACCCGC
** * * *
85989301 CCATAAGCAAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
85989347 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * * * *
85989397 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
85989440 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
85989486 CCATAAGTGAACTCGGACTAAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
85989523 TGCTCAAATA
Statistics
Matches: 145, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
42 2 0.01
43 3 0.02
44 1 0.01
45 4 0.03
46 100 0.69
47 27 0.19
48 2 0.01
49 1 0.01
50 3 0.02
51 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85998525 original size:42 final size:42
Alignment explanation
Indices: 85998463--85998582 Score: 118
Period size: 43 Copynumber: 2.8 Consensus size: 42
85998453 TATGTGTTTT
* * *
85998463 CATGTAAGACCACATATGGGACGTTGGCATTGTACTTGATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATTGTACTTGATTA
* ** *
85998505 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCAATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCAT-TGTACTTGATTA
* *
85998548 CATGTAAGACCACGTCTAGGAAGTTGGCATTGTAC
1 CATGTAAGACCACGTCTGGGACGTTGGCATTGTAC
85998583 GAGCTTTCTG
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
41 1 0.02
42 26 0.43
43 32 0.53
44 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (42 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATTGTACTTGATTA
Found at i:86010531 original size:48 final size:48
Alignment explanation
Indices: 86010464--86010678 Score: 224
Period size: 46 Copynumber: 4.6 Consensus size: 48
86010454 AAGCTGACGC
* * * *
86010464 CATGTCCTAGGCAAGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * ** * *
86010512 CATGTCCCAGACATATCTTACACTAGC-TCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* *
86010558 CATGTCCCAAACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * * * *
86010606 CCTGTCCCAGACATGTCTTACACTGGCTCT-CATA-AT-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAGGCCGATG
*
86010652 CATATCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
86010679 ACACATATCA
Statistics
Matches: 138, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
46 68 0.49
47 5 0.04
48 64 0.46
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
Found at i:86010587 original size:94 final size:93
Alignment explanation
Indices: 86010478--86010678 Score: 280
Period size: 94 Copynumber: 2.1 Consensus size: 93
86010468 TCCTAGGCAA
*
86010478 GTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATGTCCCAGACATATCTTACACTAGCTCTC
1 GTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATATCTTACACTAGCTCTC
* *
86010543 GTCTCAA-T-GCCGATGCATGTCCCAAACAT
66 --AT-AAGTGGCCGATGCATATCCCAAACAT
* * * *
86010572 GTCTTACACTGGCTTGTATATCTCGAGGCCGATGCCTGTCCCAGACATGTCTTACACTGGCTCTC
1 GTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATATCTTACACTAGCTCTC
*
86010637 ATAATGTGGCCGATGCATATCCCAGACAT
66 ATAA-GTGGCCGATGCATATCCCAAACAT
86010666 GTCTTACACTAGC
1 GTCTTACACTAGC
86010679 ACACATATCA
Statistics
Matches: 95, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 1 0.01
94 91 0.96
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (93 bp):
GTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATATCTTACACTAGCTCTC
ATAAGTGGCCGATGCATATCCCAAACAT
Found at i:86015340 original size:43 final size:42
Alignment explanation
Indices: 86015280--86015435 Score: 170
Period size: 43 Copynumber: 3.6 Consensus size: 42
86015270 GATTACCGAG
* * *
86015280 ATGTAATTACATGTAAGACCATGTCTGGGACATTGGAATCAT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT
* * *
86015322 ATTGTGATTACGTATAAGACCATGTCTAGGACATTGGCATCGT
1 A-TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT
* *
86015365 CATATGAGTT-CGTGTAAGACCATGTCTGGGACATTGCCATCGAT
1 -ATGTGA-TTACGTGTAAGACCATGTCTGGGACATTGGCATC-AT
* * *
86015409 ATGTGATAACATGTAAGACCATATCTG
1 ATGTGATTACGTGTAAGACCATGTCTG
86015436 AGATATGGCA
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
42 2 0.02
43 88 0.94
44 4 0.04
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (42 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT
Found at i:86016710 original size:14 final size:14
Alignment explanation
Indices: 86016682--86016761 Score: 76
Period size: 14 Copynumber: 5.6 Consensus size: 14
86016672 CCGTGTGAGG
86016682 CACAC-GGCCTGTT
1 CACACGGGCCTGTT
*
86016695 CACACGGGCGTGTT
1 CACACGGGCCTGTT
*
86016709 CACACGGCCCTGTT
1 CACACGGGCCTGTT
*
86016723 CACACGGGCGTGTGAGGT
1 CACACGGGCCTGT----T
86016741 -ACAC-GGCCTGTT
1 CACACGGGCCTGTT
86016753 CACACGGGC
1 CACACGGGC
86016762 GTGTGAACCC
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
12 1 0.02
13 9 0.17
14 33 0.61
16 6 0.11
17 4 0.07
18 1 0.02
ACGTcount: A:0.16, C:0.34, G:0.31, T:0.19
Consensus pattern (14 bp):
CACACGGGCCTGTT
Found at i:86016753 original size:30 final size:30
Alignment explanation
Indices: 86016673--86016767 Score: 135
Period size: 30 Copynumber: 3.2 Consensus size: 30
86016663 GTCTGGTGGC
*
86016673 CGTGTGAGGCACACGGCCTGTTCACACGGG
1 CGTGTGAGGTACACGGCCTGTTCACACGGG
86016703 CGTGT----TCACACGGCCCTGTTCACACGGG
1 CGTGTGAGGT-ACACGG-CCTGTTCACACGGG
86016731 CGTGTGAGGTACACGGCCTGTTCACACGGG
1 CGTGTGAGGTACACGGCCTGTTCACACGGG
86016761 CGTGTGA
1 CGTGTGA
86016768 ACCCTGTATG
Statistics
Matches: 58, Mismatches: 1, Indels: 12
0.82 0.01 0.17
Matches are distributed among these distances:
27 6 0.10
28 19 0.33
30 26 0.45
31 6 0.10
32 1 0.02
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.20
Consensus pattern (30 bp):
CGTGTGAGGTACACGGCCTGTTCACACGGG
Found at i:86021253 original size:17 final size:18
Alignment explanation
Indices: 86021221--86021255 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
86021211 AGAGGAAATT
86021221 GTTGCTAAAGAATAAGAA
1 GTTGCTAAAGAATAAGAA
86021239 GTTGCTAAA-AATAAGAA
1 GTTGCTAAAGAATAAGAA
86021256 AGAAAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.51, C:0.06, G:0.20, T:0.23
Consensus pattern (18 bp):
GTTGCTAAAGAATAAGAA
Found at i:86036172 original size:21 final size:21
Alignment explanation
Indices: 86036147--86036194 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
86036137 GTGACCACAT
*
86036147 GGCGTGCCCCATACCCACACG
1 GGCGTGCCCCATAACCACACG
86036168 GGCGTGCCCCATAACCACACG
1 GGCGTGCCCCATAACCACACG
*
86036189 TGCGTG
1 GGCGTG
86036195 TGAACCCTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.19, C:0.42, G:0.27, T:0.12
Consensus pattern (21 bp):
GGCGTGCCCCATAACCACACG
Found at i:86036925 original size:63 final size:63
Alignment explanation
Indices: 86036827--86037098 Score: 280
Period size: 63 Copynumber: 4.3 Consensus size: 63
86036817 CTGGCACACA
* * * * * * * *
86036827 CCGTGTGCCTTACCCGTTTGTCTCAAATATAAACTCAGTGAGTCACACAGCCTAGACACACGC
1 CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTCAGTGAGTTACACGGCCTAGACACACGC
** * * * * *
86036890 ATGTATATCTCACCTGTGTGACTCTAATATGAACTCAGTAAGTT--ACGGCCTGGACACACGC
1 CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTCAGTGAGTTACACGGCCTAGACACACGC
* * * * *
86036951 CCGTGTGTCTCACCCATGTGACTCTAATATGAAC-CTGGTGAGTTACACGGCTTGGACAGACGC
1 CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTC-AGTGAGTTACACGGCCTAGACACACGC
* * *
86037014 CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTCAGTGAGTTACATGACCTAGACACATGC
1 CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTCAGTGAGTTACACGGCCTAGACACACGC
* * *
86037077 TCGTGTGTCTCATCTGTGTGAC
1 CCGTGTGTCTCACCCGTGTGAC
86037099 CCTTATATCT
Statistics
Matches: 169, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
60 1 0.01
61 49 0.29
63 118 0.70
64 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (63 bp):
CCGTGTGTCTCACCCGTGTGACTCTAATATGAACTCAGTGAGTTACACGGCCTAGACACACGC
Found at i:86042231 original size:33 final size:33
Alignment explanation
Indices: 86042189--86042255 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
86042179 CCACAAGAAG
86042189 TATAATTGTATCACCAGGTACTGACTTGTTTCA
1 TATAATTGTATCACCAGGTACTGACTTGTTTCA
86042222 TATAATTGTATCACCAGGTACTGACTTGTTTCA
1 TATAATTGTATCACCAGGTACTGACTTGTTTCA
86042255 T
1 T
86042256 CATATAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (33 bp):
TATAATTGTATCACCAGGTACTGACTTGTTTCA
Found at i:86044119 original size:37 final size:36
Alignment explanation
Indices: 86044060--86044134 Score: 96
Period size: 37 Copynumber: 2.1 Consensus size: 36
86044050 TCAATTTCAC
* *
86044060 AATTCTATTGTTCTTAAATATCACAGATTCAACTGAT
1 AATTCTATGGTTCTTAAATATCACAAATTCAA-TGAT
* * *
86044097 AATTTTATGGTTCTTCAGTATCACAAATTCAATGAT
1 AATTCTATGGTTCTTAAATATCACAAATTCAATGAT
86044133 AA
1 AA
86044135 GTAAGGAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
36 6 0.18
37 27 0.82
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (36 bp):
AATTCTATGGTTCTTAAATATCACAAATTCAATGAT
Found at i:86048859 original size:7 final size:7
Alignment explanation
Indices: 86048844--86048875 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
86048834 AATAAAAAGC
86048844 TTTCAGCT
1 TTTC-GCT
86048852 TTTCGCT
1 TTTCGCT
86048859 TTTCGCT
1 TTTCGCT
86048866 TTTCGCT
1 TTTCGCT
86048873 TTT
1 TTT
86048876 GGTATAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.03, C:0.25, G:0.12, T:0.59
Consensus pattern (7 bp):
TTTCGCT
Found at i:86050285 original size:20 final size:21
Alignment explanation
Indices: 86050238--86050287 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
86050228 TAGATTTAAC
*
86050238 ATTCATCCTTATTTATCTTTA
1 ATTCATCTTTATTTATCTTTA
86050259 ATT-ATCTTTATTTAT-TTGT-
1 ATTCATCTTTATTTATCTT-TA
86050278 ATTCATCTTT
1 ATTCATCTTT
86050288 TCGAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 18 0.69
21 3 0.12
ACGTcount: A:0.22, C:0.14, G:0.02, T:0.62
Consensus pattern (21 bp):
ATTCATCTTTATTTATCTTTA
Found at i:86051845 original size:42 final size:41
Alignment explanation
Indices: 86051728--86051868 Score: 124
Period size: 43 Copynumber: 3.3 Consensus size: 41
86051718 GTCTGAGACA
* * *
86051728 TCGTGTAAGACCGTGTGTGGGACACAGGCCTCG-ATTGATATT
1 TCGTGTAAGACCATGTTTGGGACACAGGCATCGTATTG--ATT
* *
86051770 TACGTATAAGACCATGTTTGGGACATC-GACATCGTATCTGATT
1 T-CGTGTAAGACCATGTTTGGGACA-CAGGCATCGTAT-TGATT
* *
86051813 TCGTGTAAGACCCTGTTTGGGACAGAGGCATCGATATTTGATT
1 TCGTGTAAGACCATGTTTGGGACACAGGCATCG-TA-TTGATT
* *
86051856 ACATGTAAGACCA
1 TCGTGTAAGACCA
86051869 CGTCCGGGAC
Statistics
Matches: 80, Mismatches: 12, Indels: 13
0.76 0.11 0.12
Matches are distributed among these distances:
42 28 0.35
43 46 0.57
44 4 0.05
45 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (41 bp):
TCGTGTAAGACCATGTTTGGGACACAGGCATCGTATTGATT
Found at i:86060985 original size:29 final size:29
Alignment explanation
Indices: 86060949--86061006 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
86060939 CAAAATTTCA
86060949 ATCAAAACTTTTAATTCTATATTTATTTT
1 ATCAAAACTTTTAATTCTATATTTATTTT
*
86060978 ATCAAAACTTTTAATTCTATTTTTATTTT
1 ATCAAAACTTTTAATTCTATATTTATTTT
86061007 TTCTTTTCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (29 bp):
ATCAAAACTTTTAATTCTATATTTATTTT
Found at i:86062568 original size:33 final size:33
Alignment explanation
Indices: 86062531--86062607 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
86062521 GCTAATATGT
* * * * *
86062531 TTGATTTCCAATAGCAGATACAACAAGAAATTG
1 TTGATTTCCAACAGCAAATACAACAACAAACTC
*
86062564 TTGATTTCCAACAGCAAATACTACAACAAACTC
1 TTGATTTCCAACAGCAAATACAACAACAAACTC
86062597 TTGATTTCCAA
1 TTGATTTCCAA
86062608 AAGGAAACAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (33 bp):
TTGATTTCCAACAGCAAATACAACAACAAACTC
Found at i:86063994 original size:12 final size:12
Alignment explanation
Indices: 86063962--86064035 Score: 75
Period size: 11 Copynumber: 6.2 Consensus size: 12
86063952 AGGCAACCCA
86063962 ATTTTTA-TTTT
1 ATTTTTATTTTT
86063973 A-TTTTATTTTT
1 ATTTTTATTTTT
*
86063984 -TTCTTATTTTT
1 ATTTTTATTTTT
86063995 ATTTTTA-TTTT
1 ATTTTTATTTTT
*
86064006 ATTATTTATTATT
1 ATT-TTTATTTTT
86064019 ATTTATTATTATTT
1 ATTT-TTATT-TTT
86064033 ATT
1 ATT
86064036 ACTTTATCTT
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
10 5 0.10
11 21 0.40
12 10 0.19
13 11 0.21
14 5 0.10
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.77
Consensus pattern (12 bp):
ATTTTTATTTTT
Found at i:86063994 original size:17 final size:16
Alignment explanation
Indices: 86063962--86064032 Score: 72
Period size: 17 Copynumber: 4.2 Consensus size: 16
86063952 AGGCAACCCA
86063962 ATTTTTATTTTA-TTTT
1 ATTTTT-TTTTATTTTT
86063978 ATTTTTTTCTTATTTTT
1 ATTTTTTT-TTATTTTT
86063995 ATTTTTATTTTATTATTT
1 ATTTTT-TTTTATT-TTT
* * *
86064013 ATTATTATTTATTATT
1 ATTTTTTTTTATTTTT
86064029 ATTT
1 ATTT
86064033 ATTACTTTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
15 2 0.04
16 14 0.30
17 21 0.45
18 10 0.21
ACGTcount: A:0.21, C:0.01, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTTTTTTATTTTT
Found at i:86064003 original size:28 final size:30
Alignment explanation
Indices: 86063962--86064035 Score: 100
Period size: 28 Copynumber: 2.5 Consensus size: 30
86063952 AGGCAACCCA
*
86063962 ATTTTTA-TTTTATTTTATT-TTT-TTCTT
1 ATTTTTATTTTTATTTTATTATTTATTATT
86063989 ATTTTTATTTTTATTTTATTATTTATTATT
1 ATTTTTATTTTTATTTTATTATTTATTATT
86064019 ATTTATTATTATTTATT
1 ATTT-TTATT-TTTATT
86064036 ACTTTATCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 7 0.17
28 12 0.29
29 3 0.07
30 8 0.20
31 5 0.12
32 6 0.15
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.77
Consensus pattern (30 bp):
ATTTTTATTTTTATTTTATTATTTATTATT
Found at i:86064026 original size:7 final size:7
Alignment explanation
Indices: 86063987--86064042 Score: 57
Period size: 7 Copynumber: 8.1 Consensus size: 7
86063977 TATTTTTTTC
86063987 TTATTT-
1 TTATTTA
86063993 TTATTT-
1 TTATTTA
86063999 TTATTTTA
1 TTA-TTTA
86064007 TTATTTA
1 TTATTTA
86064014 TTA-TTA
1 TTATTTA
86064020 TT-TATTA
1 TTAT-TTA
86064027 TTATTTA
1 TTATTTA
86064034 TTACTTTA
1 TTA-TTTA
86064042 T
1 T
86064043 CTTATTTGGA
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
6 14 0.32
7 21 0.48
8 9 0.20
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (7 bp):
TTATTTA
Found at i:86064033 original size:10 final size:10
Alignment explanation
Indices: 86063965--86064036 Score: 75
Period size: 10 Copynumber: 7.7 Consensus size: 10
86063955 CAACCCAATT
86063965 TTTATT-TTA
1 TTTATTATTA
86063974 TTTTATT-TT-
1 -TTTATTATTA
*
86063983 TTTCTTATT-
1 TTTATTATTA
*
86063992 TTTATTTTTA
1 TTTATTATTA
86064002 -TT-TTATTA
1 TTTATTATTA
86064010 TTTATTATTA
1 TTTATTATTA
86064020 TTTATTATTA
1 TTTATTATTA
86064030 TTTATTA
1 TTTATTA
86064037 CTTTATCTTA
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
8 10 0.19
9 13 0.24
10 31 0.57
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTATTATTA
Found at i:86064034 original size:17 final size:17
Alignment explanation
Indices: 86063962--86064042 Score: 69
Period size: 17 Copynumber: 4.8 Consensus size: 17
86063952 AGGCAACCCA
*
86063962 ATTTTTATTTTATT-TT
1 ATTTTTACTTTATTATT
* *
86063978 ATTTTT-TTCTTATTTTT
1 ATTTTTACT-TTATTATT
*
86063995 ATTTTTATTTTATTATTT
1 ATTTTTACTTTATTA-TT
*
86064013 ATTATTA-TTTATTATT
1 ATTTTTACTTTATTATT
86064029 ATTTATTACTTTAT
1 ATTT-TTACTTTAT
86064043 CTTATTTGGA
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
15 2 0.04
16 16 0.29
17 23 0.41
18 15 0.27
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.75
Consensus pattern (17 bp):
ATTTTTACTTTATTATT
Found at i:86064041 original size:28 final size:26
Alignment explanation
Indices: 86063962--86064042 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 26
86063952 AGGCAACCCA
* *
86063962 ATTTTTATTTTATTTTATTTTTTTCTT
1 ATTTTTATTTTATTTTA-TTATTTATT
86063989 ATTTTTATTTTTATTTTATTATTTATT
1 ATTTTTA-TTTTATTTTATTATTTATT
86064016 ATTATTTATTATTA-TTTATTACTTTAT
1 ATT-TTTATT-TTATTTTATTA-TTTAT
86064043 CTTATTTGGA
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
27 26 0.54
28 22 0.46
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.75
Consensus pattern (26 bp):
ATTTTTATTTTATTTTATTATTTATT
Found at i:86064047 original size:20 final size:19
Alignment explanation
Indices: 86063975--86064048 Score: 73
Period size: 20 Copynumber: 3.9 Consensus size: 19
86063965 TTTATTTTAT
*
86063975 TTTATT-TTTTTCTTATT-
1 TTTATTATTTATCTTATTA
*
86063992 TTTATT-TTTATTTTATTA
1 TTTATTATTTATCTTATTA
* *
86064010 TTTATTATTATTTATTATTA
1 TTTATTATT-TATCTTATTA
86064030 TTTATTACTTTATCTTATT
1 TTTATTA-TTTATCTTATT
86064049 TGGATATTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
17 15 0.32
18 6 0.13
19 2 0.04
20 22 0.47
21 2 0.04
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTATTATTTATCTTATTA
Found at i:86064049 original size:17 final size:17
Alignment explanation
Indices: 86063965--86064042 Score: 64
Period size: 15 Copynumber: 4.9 Consensus size: 17
86063955 CAACCCAATT
86063965 TTTATT-TTATTTTATT-
1 TTTATTATTA-TTTATTA
*
86063981 TTT-TTCTTATTT-TTA
1 TTTATTATTATTTATTA
86063996 TTT-TTA-T-TTTATTA
1 TTTATTATTATTTATTA
86064010 TTTATTATTATTTATTA
1 TTTATTATTATTTATTA
86064027 -TTATTTATTACTTTAT
1 TTTA-TTATTA-TTTAT
86064043 CTTATTTGGA
Statistics
Matches: 53, Mismatches: 1, Indels: 14
0.78 0.01 0.21
Matches are distributed among these distances:
13 3 0.06
14 9 0.17
15 13 0.25
16 10 0.19
17 13 0.25
18 5 0.09
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTATTATTTATTA
Found at i:86065367 original size:99 final size:99
Alignment explanation
Indices: 86065187--86065375 Score: 265
Period size: 99 Copynumber: 1.9 Consensus size: 99
86065177 AATAATTTTT
*
86065187 TTAGGAATATATTGGGCTAAGTAACCGAGATAGGGTGTTTGGCTGTCATCTCTTTTAACGTCAAA
1 TTAGGAATATATTGGGCTAAGTAACCGAGATAGGGTGCTTGGCTGTCATCTCTTTTAACGTCAAA
* *
86065252 AGGTTCGATATGTTCTTAAGAAAAATATAATAAG
66 AGGTTCAATATATTCTTAAGAAAAATATAATAAG
* * * * * *
86065286 TTAGGAGTATGTTGGGCTGAGTAACC-AGGGTGGGGTGCTTGGCTGTCATCTCTCTTT-GCGTCA
1 TTAGGAATATATTGGGCTAAGTAACCGA-GATAGGGTGCTTGGCTGTCATCTCT-TTTAACGTCA
86065349 AAAGGTTCAATATATTCTTAAGAAAAA
64 AAAGGTTCAATATATTCTTAAGAAAAA
86065376 AAAAACAAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
98 1 0.01
99 75 0.95
100 3 0.04
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.33
Consensus pattern (99 bp):
TTAGGAATATATTGGGCTAAGTAACCGAGATAGGGTGCTTGGCTGTCATCTCTTTTAACGTCAAA
AGGTTCAATATATTCTTAAGAAAAATATAATAAG
Found at i:86066047 original size:10 final size:10
Alignment explanation
Indices: 86066032--86066081 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
86066022 TGGATTTAAC
86066032 ATTTATCTTT
1 ATTTATCTTT
86066042 ATTTATCTTT
1 ATTTATCTTT
*
86066052 AATTATCTTT
1 ATTTATCTTT
86066062 ATTTAT-TTGT
1 ATTTATCTT-T
*
86066072 ATTCATCTTT
1 ATTTATCTTT
86066082 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:86067087 original size:13 final size:11
Alignment explanation
Indices: 86067051--86067080 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
86067041 ATCCAAATTA
86067051 ATTTATATGAT
1 ATTTATATGAT
*
86067062 ATTTATATAAT
1 ATTTATATGAT
86067073 ATTTATAT
1 ATTTATAT
86067081 TGGATATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (11 bp):
ATTTATATGAT
Found at i:86073747 original size:50 final size:50
Alignment explanation
Indices: 86073623--86073871 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
86073613 GATAATAACA
* * ** * *
86073623 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
86073674 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
86073724 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
86073774 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
86073829 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
86073872 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:86073801 original size:100 final size:104
Alignment explanation
Indices: 86073622--86073871 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
86073612 TGATAATAAC
**
86073622 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
86073687 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
86073724 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
86073787 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
86073829 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
86073872 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:86073986 original size:13 final size:13
Alignment explanation
Indices: 86073965--86073996 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
86073955 GCTTGGATCA
*
86073965 TCATCAAATAAAT
1 TCATAAAATAAAT
86073978 TCATAAAATAAAT
1 TCATAAAATAAAT
86073991 TCATAA
1 TCATAA
86073997 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:86074243 original size:30 final size:30
Alignment explanation
Indices: 86074208--86074265 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
86074198 CCTCGACTCT
*
86074208 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
86074238 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
86074266 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:86080693 original size:155 final size:155
Alignment explanation
Indices: 86080480--86080792 Score: 626
Period size: 155 Copynumber: 2.0 Consensus size: 155
86080470 AATTCCATAT
86080480 ATCATTCACCCTCTAATTCATTTTATACTATCTTGGGTGATTTTTCAAATTCACGTCACTGTGCT
1 ATCATTCACCCTCTAATTCATTTTATACTATCTTGGGTGATTTTTCAAATTCACGTCACTGTGCT
86080545 GCCTGAATTCTGTTTCTTTGCAAAATTTTATCCTTTCATGATTTCCATGCATAATTTATCACCTA
66 GCCTGAATTCTGTTTCTTTGCAAAATTTTATCCTTTCATGATTTCCATGCATAATTTATCACCTA
86080610 ATCTTTCATAACAACAAACACCTTC
131 ATCTTTCATAACAACAAACACCTTC
86080635 ATCATTCACCCTCTAATTCATTTTATACTATCTTGGGTGATTTTTCAAATTCACGTCACTGTGCT
1 ATCATTCACCCTCTAATTCATTTTATACTATCTTGGGTGATTTTTCAAATTCACGTCACTGTGCT
86080700 GCCTGAATTCTGTTTCTTTGCAAAATTTTATCCTTTCATGATTTCCATGCATAATTTATCACCTA
66 GCCTGAATTCTGTTTCTTTGCAAAATTTTATCCTTTCATGATTTCCATGCATAATTTATCACCTA
86080765 ATCTTTCATAACAACAAACACCTTC
131 ATCTTTCATAACAACAAACACCTTC
86080790 ATC
1 ATC
86080793 CTTAATTTTA
Statistics
Matches: 158, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 158 1.00
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (155 bp):
ATCATTCACCCTCTAATTCATTTTATACTATCTTGGGTGATTTTTCAAATTCACGTCACTGTGCT
GCCTGAATTCTGTTTCTTTGCAAAATTTTATCCTTTCATGATTTCCATGCATAATTTATCACCTA
ATCTTTCATAACAACAAACACCTTC
Found at i:86081473 original size:50 final size:50
Alignment explanation
Indices: 86081349--86081596 Score: 282
Period size: 50 Copynumber: 4.8 Consensus size: 50
86081339 GATAATAACA
* * ** * *
86081349 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
86081400 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
86081450 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
86081500 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGAC-CTC-TCATC-T-CGG
* *
86081554 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
86081597 TTACCCAAAT
Statistics
Matches: 169, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 87 0.51
51 36 0.21
52 3 0.02
53 2 0.01
54 5 0.03
55 35 0.21
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:86081527 original size:100 final size:105
Alignment explanation
Indices: 86081348--86081596 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 105
86081338 TGATAATAAC
**
86081348 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
86081413 TCCCAGACATGGTCTTATAGGGGAC-CTC-TCATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACTCTCATCATCTTAAGG
* *
86081450 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
*
86081513 TCCCAGACATGGTCTTACAGGGGACTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACTCTCATCATCTTAAGG
* *
86081554 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
86081597 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
99 1 0.01
100 45 0.34
101 39 0.30
102 4 0.03
103 1 0.01
104 2 0.02
105 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (105 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACTCTCATCATCTTAAGG
Found at i:86081712 original size:13 final size:13
Alignment explanation
Indices: 86081691--86081722 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
86081681 GCTTGGATCA
*
86081691 TCATCAAATAAAT
1 TCATAAAATAAAT
86081704 TCATAAAATAAAT
1 TCATAAAATAAAT
86081717 TCATAA
1 TCATAA
86081723 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:86081969 original size:30 final size:29
Alignment explanation
Indices: 86081934--86081990 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
86081924 CCTCGACTCT
*
86081934 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTAC-ATTTTGCCCCTA
* *
86081964 AACTTTTACATAATTACATTTTTCCCC
1 AACTTTTACAAAATTACATTTTGCCCC
86081991 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.32, C:0.25, G:0.02, T:0.42
Consensus pattern (29 bp):
AACTTTTACAAAATTACATTTTGCCCCTA
Found at i:86087341 original size:50 final size:50
Alignment explanation
Indices: 86087167--86087411 Score: 266
Period size: 50 Copynumber: 4.8 Consensus size: 50
86087157 GATAATAACA
* ** *
86087167 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGT-CTCGG
* * * *
86087218 TGCCCATGCCATGTCCCAGACATGGTCTTATA-GGGGCCTCTCATCTC-G
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
*
86087266 TGCCAACGCC-TGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
* * *
86087315 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--G-TC-T-CGG
*
86087370 ATGCCAATG-CATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
86087412 TTACCCAAAT
Statistics
Matches: 164, Mismatches: 20, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
47 20 0.12
48 23 0.14
49 14 0.09
50 34 0.21
51 29 0.18
52 1 0.01
53 2 0.01
54 1 0.01
55 33 0.20
56 7 0.04
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
Found at i:86087350 original size:97 final size:102
Alignment explanation
Indices: 86087166--86087411 Score: 315
Period size: 97 Copynumber: 2.4 Consensus size: 102
86087156 TGATAATAAC
**
86087166 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCC-TGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
*
86087231 TCCCAGACATGGTCTTATAGGGG-CCTCTC-ATC-T-CG
64 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTACG
* *
86087266 -TGCCAACGCCTGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATGT
1 ATGCCAAAGCCTGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATGT
*
86087329 CCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 CCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTT-ACG
* * *
86087370 ATGCCAATGCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCTGTCCCAGACATGGTCTTACATGGGACCTCT
86087412 TTACCCAAAT
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
96 1 0.01
97 43 0.34
98 32 0.25
99 9 0.07
101 3 0.02
102 1 0.01
104 1 0.01
105 38 0.30
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (102 bp):
ATGCCAAAGCCTGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGTC
CCAGACATGGTCTTACAGGGGACCTCTCAATCTTACG
Found at i:86087777 original size:29 final size:29
Alignment explanation
Indices: 86087744--86087799 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
86087734 CCTCGACTCT
*
86087744 AACTTTTTCAAAATTACAATTTTGCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCTA
* *
86087773 AACTTTTACATAATTACATTTTTGCCC
1 AACTTTTACAAAATTACAATTTTGCCC
86087800 CAAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.43
Consensus pattern (29 bp):
AACTTTTACAAAATTACAATTTTGCCCTA
Found at i:86094866 original size:50 final size:50
Alignment explanation
Indices: 86094742--86094990 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
86094732 GATAATAACA
* * ** * *
86094742 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
86094793 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
86094843 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
86094893 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
86094948 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
86094991 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:86094920 original size:100 final size:104
Alignment explanation
Indices: 86094741--86094990 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
86094731 TGATAATAAC
**
86094741 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
86094806 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
86094843 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
86094906 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
86094948 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
86094991 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:86095106 original size:13 final size:13
Alignment explanation
Indices: 86095085--86095116 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
86095075 GCTTGGATCA
*
86095085 TCATCAAATAAAT
1 TCATAAAATAAAT
86095098 TCATAAAATAAAT
1 TCATAAAATAAAT
86095111 TCATAA
1 TCATAA
86095117 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:86095362 original size:30 final size:30
Alignment explanation
Indices: 86095328--86095385 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
86095318 CCTCGACTCT
*
86095328 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
86095358 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
86095386 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:86098684 original size:17 final size:17
Alignment explanation
Indices: 86098662--86098696 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
86098652 ATCATAATTT
*
86098662 TAATATTTAAATTCAAG
1 TAATATTCAAATTCAAG
*
86098679 TAATATTCAAATTTAAG
1 TAATATTCAAATTCAAG
86098696 T
1 T
86098697 TTTTTCTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (17 bp):
TAATATTCAAATTCAAG
Found at i:86106110 original size:16 final size:16
Alignment explanation
Indices: 86106091--86106121 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86106081 ATGTTAATGT
*
86106091 TATTTAATTTTAAAAA
1 TATTTAATATTAAAAA
86106107 TATTTAATATTAAAA
1 TATTTAATATTAAAA
86106122 TAATACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:86106261 original size:14 final size:15
Alignment explanation
Indices: 86106217--86106263 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
86106207 ATATGTATTG
*
86106217 TTAA-ATTAATTTGTT
1 TTAATATTAAATT-TT
*
86106232 TTAATGTTAAATTTT
1 TTAATATTAAATTTT
*
86106247 TTAATATTCAATTTT
1 TTAATATTAAATTTT
86106262 TT
1 TT
86106264 TTTTTTGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 21 0.78
16 6 0.22
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (15 bp):
TTAATATTAAATTTT
Found at i:86106264 original size:16 final size:15
Alignment explanation
Indices: 86106217--86106264 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
86106207 ATATGTATTG
86106217 TTAA-ATTAATTTGTT
1 TTAATATTAATTT-TT
* *
86106232 TTAATGTTAAATTTT
1 TTAATATTAATTTTT
86106247 TTAATATTCAATTTTT
1 TTAATATT-AATTTTT
86106263 TT
1 TT
86106265 TTTTTGTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (15 bp):
TTAATATTAATTTTT
Found at i:86109128 original size:50 final size:50
Alignment explanation
Indices: 86109052--86109293 Score: 225
Period size: 50 Copynumber: 4.8 Consensus size: 50
86109042 ACCGAAGCTC
* * *
86109052 TCTGGTACGCATAGTAGCCTGCACTTAGTATTACACATACGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
* ** * * * * * *
86109102 TCTGGTACACGTAGTAGCCTAAACTTAGTATTACACACGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAA
* * * *
86109153 TCGGGCACGCATAGTATCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
* * *
86109203 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
*** * *
86109252 CCGTCTTAAACACATAGTAGCCTACACATAGTACTACACATG
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATG
86109294 TGCTCTCACA
Statistics
Matches: 151, Mismatches: 37, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
49 2 0.01
50 80 0.53
51 37 0.25
52 32 0.21
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
Found at i:86109196 original size:101 final size:101
Alignment explanation
Indices: 86109044--86109244 Score: 321
Period size: 101 Copynumber: 2.0 Consensus size: 101
86109034 CCCTTGTAAC
* * * *
86109044 CGAAGCTCTCTGGTACGCATAGTAGCCTGCACTTAGTATTACACATACGACCTAACAATCTGGTA
1 CGAAGCTATCGGGCACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCTGGTA
*
86109109 CACGTAGTAGCCTAAACTTAGTATTACACACGTGAT
66 CACGTAGTAGCCTAAACTTAGTACTACACACGTGAT
* *
86109145 CGAAGCTATCGGGCACGCATAGTATCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
1 CGAAGCTATCGGGCACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCTGGTA
**
86109210 CACGTAGTAGCCTGCACTTAGTACTACACACGTGA
66 CACGTAGTAGCCTAAACTTAGTACTACACACGTGA
86109245 CCTAAAACCG
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 91 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (101 bp):
CGAAGCTATCGGGCACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCTGGTA
CACGTAGTAGCCTAAACTTAGTACTACACACGTGAT
Found at i:86111873 original size:29 final size:32
Alignment explanation
Indices: 86111796--86111873 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 32
86111786 TTTTTTTTTA
*
86111796 TTTTTTAATTAATAAAT-ATATTATTTTCAAT
1 TTTTTTAATTAATAAATCATACTATTTTCAAT
* *
86111827 TTTTTT-ATT-TTAATTCAT-CT-TTTT-AAT
1 TTTTTTAATTAATAAATCATACTATTTTCAAT
*
86111854 TTTTTTAATTAATAACTCAT
1 TTTTTTAATTAATAAATCAT
86111874 TTATATATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
27 9 0.23
28 7 0.18
29 12 0.31
30 5 0.13
31 6 0.15
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (32 bp):
TTTTTTAATTAATAAATCATACTATTTTCAAT
Found at i:86114422 original size:11 final size:11
Alignment explanation
Indices: 86114402--86114435 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
86114392 CTGTAATTTA
*
86114402 TTTCTATTTTT
1 TTTCTTTTTTT
86114413 TTTCTTTTTTT
1 TTTCTTTTTTT
86114424 TTTCCTTTTTTT
1 TTT-CTTTTTTT
86114436 GGATCCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 13 0.62
12 8 0.38
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:86115329 original size:7 final size:7
Alignment explanation
Indices: 86115298--86115331 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
86115288 TGTATTATTA
*
86115298 TATTATT
1 TATTTTT
86115305 TA-TTTT
1 TATTTTT
86115311 TATTTTT
1 TATTTTT
86115318 TATTTTT
1 TATTTTT
86115325 TATTTTT
1 TATTTTT
86115332 GATACATCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (7 bp):
TATTTTT
Found at i:86122016 original size:44 final size:43
Alignment explanation
Indices: 86121834--86122046 Score: 125
Period size: 44 Copynumber: 4.8 Consensus size: 43
86121824 TTAGCCACCG
* *
86121834 GTCTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTGAAGATACAA
1 GTCTTATCTCTCTGAGGTAGCAAG-GAGCAGATTGAAGATACAA
* * *
86121878 GTCTTATCT-TCCTGAGGTAGCAAGGAAGTAGACTGAA-ATTGC-A
1 GTCTTATCTCT-CTGAGGTAGCAAGG-AGCAGATTGAAGA-TACAA
* * ** ** *
86121921 GATCTTATCTC-CATGTA--TCGGCTATGGAGCAGATTTTAGCCACCA
1 G-TCTTATCTCTC-TG-AGGT-AGC-AAGGAGCAGATTGAAGATACAA
* *
86121966 GCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAA
1 GTCTTATCTCTCTGAGGTAGCAAG-GAGCAGATTGAAGATACAA
* *
86122010 GTCTTATCT-TCCTAAGGTAGCAAGGAAGCAGACTGAA
1 GTCTTATCTCT-CTGAGGTAGCAAGG-AGCAGATTGAA
86122047 ATTGCAGATC
Statistics
Matches: 125, Mismatches: 27, Indels: 34
0.67 0.15 0.18
Matches are distributed among these distances:
43 12 0.10
44 105 0.84
45 8 0.06
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (43 bp):
GTCTTATCTCTCTGAGGTAGCAAGGAGCAGATTGAAGATACAA
Found at i:86122028 original size:132 final size:132
Alignment explanation
Indices: 86121791--86122086 Score: 547
Period size: 132 Copynumber: 2.2 Consensus size: 132
86121781 AAATGGTGAG
* * *
86121791 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGTCTTATCTCTCTGAGGTAGTA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* *
86121856 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAATTGCA
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAATTGCA
86121921 GA
131 GA
86121923 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
86121988 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAATTGCA
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAATTGCA
86122053 GA
131 GA
86122055 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
86122087 CCAAGATGGC
Statistics
Matches: 159, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 159 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (132 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAATTGCA
GA
Found at i:86122105 original size:177 final size:178
Alignment explanation
Indices: 86121922--86122319 Score: 636
Period size: 177 Copynumber: 2.2 Consensus size: 178
86121912 GAAATTGCAG
86121922 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGC
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGC
* * *
86121987 AAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTG-AAATTG
66 AAGAGAGCAGGTTGAAGATACAAATCTTATCTTCCTAAGGTAACAAGGAAGCAGACTGAAAATTA
* * *
86122051 CAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCCAAGATGGCGA
131 CAGACCTTATCTCCATGTATCGGCTATGAAACAGATCCAAGATGGCGA
* * *
86122099 ATCTTATCTTCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTTTGAGGTAGC
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGC
* * * *
86122164 AAGAGGGCAGGTTGAAGGTACAAATCTTATCTTCTTGAGGTAACAAGGAAGCAGACTGAAAATTA
66 AAGAGAGCAGGTTGAAGATACAAATCTTATCTTCCTAAGGTAACAAGGAAGCAGACTGAAAATTA
* *
86122229 CAGACCTTATCTCCATGTATCGGCTATGAAACAGATCGAAGATGGCTA
131 CAGACCTTATCTCCATGTATCGGCTATGAAACAGATCCAAGATGGCGA
* *
86122277 GTCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACC
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACC
86122320 GGCTTTGTCT
Statistics
Matches: 202, Mismatches: 18, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
177 114 0.56
178 88 0.44
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (178 bp):
ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGC
AAGAGAGCAGGTTGAAGATACAAATCTTATCTTCCTAAGGTAACAAGGAAGCAGACTGAAAATTA
CAGACCTTATCTCCATGTATCGGCTATGAAACAGATCCAAGATGGCGA
Found at i:86122354 original size:178 final size:177
Alignment explanation
Indices: 86121922--86122377 Score: 614
Period size: 178 Copynumber: 2.6 Consensus size: 177
86121912 GAAATTGCAG
*
86121922 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCT-CTCTGAGGTAG
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCTTTATCTCCT-TGAGGTAG
* * * *
86121986 CAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAATTG
65 CAAGGGAGCAGGTTGAAGATACAAATCTTATCTTCCTAAGGTAACAAGGAAGCAGACTGAAATTA
* * *
86122051 CAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCCAAGATGGCGA
130 CAGACCTTATCTCCATGTATCGGCTATGAAACAGATCCAAGATGGCGA
* *
86122099 ATCTTATCTTCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG-TCTTATCTCTTTGAGGTAG
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCT-TTATCTCCTTGAGGTAG
* * *
86122163 CAAGAGG-GCAGGTTGAAGGTACAAATCTTATCTTCTTGAGGTAACAAGGAAGCAGACTGAAAAT
65 CAAG-GGAGCAGGTTGAAGATACAAATCTTATCTTCCTAAGGTAACAAGGAAGCAGACTG-AAAT
* *
86122227 TACAGACCTTATCTCCATGTATCGGCTATGAAACAGATCGAAGATGGCTA
128 TACAGACCTTATCTCCATGTATCGGCTATGAAACAGATCCAAGATGGCGA
* * * * ** *
86122277 GTCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCGGCTTTGTCTCCTTGAAATTG-
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCTTTATCTCCTTGAGGTAGC
* * *
86122341 TAGTGGAGCAGGTTGAAGTTACAAACCTTATCTTCCT
66 AAG-GGAGCAGGTTGAAGATACAAATCTTATCTTCCT
86122378 GAAGTTACTA
Statistics
Matches: 244, Mismatches: 29, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
177 113 0.46
178 130 0.53
179 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (177 bp):
ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCTTTATCTCCTTGAGGTAGC
AAGGGAGCAGGTTGAAGATACAAATCTTATCTTCCTAAGGTAACAAGGAAGCAGACTGAAATTAC
AGACCTTATCTCCATGTATCGGCTATGAAACAGATCCAAGATGGCGA
Found at i:86125365 original size:15 final size:16
Alignment explanation
Indices: 86125343--86125383 Score: 59
Period size: 14 Copynumber: 2.7 Consensus size: 16
86125333 ATTCTGTTCA
86125343 TATTTTATTTTATAAT
1 TATTTTATTTTATAAT
86125359 T-TTTTA-TTTATAAT
1 TATTTTATTTTATAAT
*
86125373 TAATTTATTTT
1 TATTTTATTTT
86125384 GTTCGCTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 9 0.41
15 9 0.41
16 4 0.18
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTTATTTTATAAT
Found at i:86127400 original size:23 final size:23
Alignment explanation
Indices: 86127318--86127404 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
86127308 CCTGATCAGT
*
86127318 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
86127340 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
86127360 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
* *
86127383 ATATGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
86127405 TCGGTAAAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.63
22 1 0.02
23 18 0.33
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:86127800 original size:15 final size:15
Alignment explanation
Indices: 86127775--86127832 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
86127765 TCATATATAT
86127775 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
86127791 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
86127806 AATAATTTCAATCAA
1 TATAAATTCAATCAA
86127821 TATAAATTCAAT
1 TATAAATTCAAT
86127833 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:86132050 original size:15 final size:15
Alignment explanation
Indices: 86132030--86132086 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
86132020 CGATGAATTT
*
86132030 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
86132045 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
86132060 ATTGAAATTATATTG
1 ATTGAAATTATATTG
86132075 ATTG-AATTATAT
1 ATTGAAATTATAT
86132087 AATATATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:86132301 original size:18 final size:17
Alignment explanation
Indices: 86132265--86132299 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
86132255 ATTGAAATAT
86132265 ATTGTTGAATTGATGAA
1 ATTGTTGAATTGATGAA
86132282 ATTGTATGAATTG-TGAA
1 ATTGT-TGAATTGATGAA
86132299 A
1 A
86132300 ATGGGTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (17 bp):
ATTGTTGAATTGATGAA
Found at i:86132494 original size:23 final size:21
Alignment explanation
Indices: 86132468--86132517 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
86132458 AGGCACTTTA
86132468 TGTGTCATATTTCAGGCACCTCG
1 TGTGTCATA--TCAGGCACCTCG
*
86132491 TGTGTCGTATCAGGCACCTCG
1 TGTGTCATATCAGGCACCTCG
86132512 TGTGTC
1 TGTGTC
86132518 GTTTTAGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 18 0.69
23 8 0.31
ACGTcount: A:0.14, C:0.26, G:0.26, T:0.34
Consensus pattern (21 bp):
TGTGTCATATCAGGCACCTCG
Found at i:86132503 original size:21 final size:21
Alignment explanation
Indices: 86132479--86132542 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
86132469 GTGTCATATT
86132479 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
*
86132500 TCAGGCACCTCGTGTGTCGTT
1 TCAGGCACCTCGTGTGTCGTA
* * **
86132521 TTAGGCACTTTATGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
86132542 T
1 T
86132543 ACTGATCAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCGTA
Found at i:86134156 original size:19 final size:19
Alignment explanation
Indices: 86134105--86134156 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 19
86134095 TTATAAAAAT
* *
86134105 AAAAATT-TCAAATTTAAA
1 AAAAATTATAAAAATTAAA
* **
86134123 AAAAATAATGGAAATTAAA
1 AAAAATTATAAAAATTAAA
86134142 AAAAATTATAAAAAT
1 AAAAATTATAAAAAT
86134157 AAGTAAAAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (19 bp):
AAAAATTATAAAAATTAAA
Found at i:86139969 original size:21 final size:21
Alignment explanation
Indices: 86139943--86139983 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
86139933 ATCTGCTCAA
* *
86139943 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
86139964 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
86139984 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:86143662 original size:18 final size:18
Alignment explanation
Indices: 86143639--86143678 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
86143629 CATTCAAATC
86143639 ACAGTAAAAATTATCCAT
1 ACAGTAAAAATTATCCAT
86143657 ACAGTAAAAATTATCCAT
1 ACAGTAAAAATTATCCAT
86143675 ACAG
1 ACAG
86143679 CTGTGTGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.17, G:0.07, T:0.25
Consensus pattern (18 bp):
ACAGTAAAAATTATCCAT
Found at i:86160194 original size:22 final size:22
Alignment explanation
Indices: 86160154--86160195 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
86160144 ATATTTGAGC
**
86160154 ATTGGTATTGAATTTAAATTGA
1 ATTGGTATTGAATCCAAATTGA
*
86160176 ATTGGTATTTAATCCAAATT
1 ATTGGTATTGAATCCAAATT
86160196 TTAATTATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (22 bp):
ATTGGTATTGAATCCAAATTGA
Found at i:86164462 original size:30 final size:30
Alignment explanation
Indices: 86164423--86164479 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
86164413 TTTTATAAGT
86164423 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
86164453 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
86164480 AACAACAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:86167170 original size:3 final size:3
Alignment explanation
Indices: 86167162--86167201 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
86167152 GCTCTACATT
86167162 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
86167202 CCTAGAACTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:86167311 original size:18 final size:18
Alignment explanation
Indices: 86167288--86167324 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
86167278 TATGGAGAAC
86167288 ATTTTATTCTTTTATTTA
1 ATTTTATTCTTTTATTTA
*
86167306 ATTTTATTTTTTTATTTA
1 ATTTTATTCTTTTATTTA
86167324 A
1 A
86167325 AAATAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (18 bp):
ATTTTATTCTTTTATTTA
Found at i:86172775 original size:29 final size:31
Alignment explanation
Indices: 86172725--86172786 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 31
86172715 TGAGAAATTT
86172725 TGGTTGGCCATGTGCCCAACAT-G-GGTGTG
1 TGGTTGGCCATGTGCCCAACATGGAGGTGTG
**
86172754 TGGTTGGCCATGTGGGGC-ACATGGAGGTGTG
1 TGGTTGGCCATGT-GCCCAACATGGAGGTGTG
86172785 TG
1 TG
86172787 ATTACACGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 17 0.61
30 3 0.11
31 8 0.29
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (31 bp):
TGGTTGGCCATGTGCCCAACATGGAGGTGTG
Found at i:86173502 original size:34 final size:34
Alignment explanation
Indices: 86173412--86173503 Score: 116
Period size: 34 Copynumber: 2.7 Consensus size: 34
86173402 TGTTCTAATT
86173412 TAATATGACATTTTGATATGATATATGTTTCTGG
1 TAATATGACATTTTGATATGATATATGTTTCTGG
* * * *
86173446 -AATTAAGATATTCTGATGTGATATATGATTT-TGG
1 TAA-TATGACATTTTGATATGATATATG-TTTCTGG
86173480 TAATATGACATTTTGATATGATAT
1 TAATATGACATTTTGATATGATAT
86173504 TTGTATAAGT
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
33 2 0.04
34 40 0.85
35 5 0.11
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (34 bp):
TAATATGACATTTTGATATGATATATGTTTCTGG
Found at i:86174089 original size:20 final size:19
Alignment explanation
Indices: 86174064--86174102 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
86174054 AGAAATTGTA
86174064 ATTCTTAGAAAATAGAATTT
1 ATTCTTAGAAAATA-AATTT
86174084 ATTCTTAGAAAATAAATTT
1 ATTCTTAGAAAATAAATTT
86174103 TCATTACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (19 bp):
ATTCTTAGAAAATAAATTT
Found at i:86174463 original size:18 final size:17
Alignment explanation
Indices: 86174440--86174473 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
86174430 ATGTTTCCAA
*
86174440 AATAAATATTATTTATTT
1 AATAAAT-TTAATTATTT
86174458 AATAAATTTAATTATT
1 AATAAATTTAATTATT
86174474 ACTATTAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AATAAATTTAATTATTT
Found at i:86178845 original size:39 final size:39
Alignment explanation
Indices: 86178777--86178993 Score: 245
Period size: 39 Copynumber: 5.6 Consensus size: 39
86178767 GTAACCACGA
* * *
86178777 CACAAAAGTGCGATCAAGGATACCGAAGTACAATAGGGG
1 CACAAAAGTGCGATCAGGGGTACCGAAGTACAACAGGGG
* * *
86178816 CACAAAATTGCGATTAGGGGTACCAAAGTACAACAGGGG
1 CACAAAAGTGCGATCAGGGGTACCGAAGTACAACAGGGG
* * *
86178855 CACATAAGTGCGATCAGGGGTATCGAAGTACAATAGGGG
1 CACAAAAGTGCGATCAGGGGTACCGAAGTACAACAGGGG
** * * *
86178894 CACCTATGTGCAATCAGGGGTGCCGAAGTACAACAGGGG
1 CACAAAAGTGCGATCAGGGGTACCGAAGTACAACAGGGG
* ** *
86178933 AACGTAAGTGTGATCAGGGGTACCGAAGTACAACAGGGG
1 CACAAAAGTGCGATCAGGGGTACCGAAGTACAACAGGGG
** *
86178972 CACGTAAGTACGATCAGGGGTA
1 CACAAAAGTGCGATCAGGGGTA
86178994 TCATTATATA
Statistics
Matches: 151, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 151 1.00
ACGTcount: A:0.35, C:0.18, G:0.32, T:0.16
Consensus pattern (39 bp):
CACAAAAGTGCGATCAGGGGTACCGAAGTACAACAGGGG
Found at i:86178863 original size:19 final size:19
Alignment explanation
Indices: 86178831--86178982 Score: 79
Period size: 19 Copynumber: 7.8 Consensus size: 19
86178821 AATTGCGATT
* *
86178831 AGGGGTACCAAAGTACAAC
1 AGGGGCACCTAAGTACAAC
* * *
86178850 AGGGGCACATAAGTGCGATC
1 AGGGGCACCTAAGTAC-AAC
* * * *
86178870 AGGGGTATCGAAGTACAAT
1 AGGGGCACCTAAGTACAAC
* *
86178889 AGGGGCACCTATGTGCAATC
1 AGGGGCACCTAAGTACAA-C
** *
86178909 AGGGGTGCCGAAGTACAAC
1 AGGGGCACCTAAGTACAAC
* * ** *
86178928 AGGGGAACGTAAGTGTGATC
1 AGGGGCACCTAAGT-ACAAC
* *
86178948 AGGGGTACCGAAGTACAAC
1 AGGGGCACCTAAGTACAAC
*
86178967 AGGGGCACGTAAGTAC
1 AGGGGCACCTAAGTAC
86178983 GATCAGGGGT
Statistics
Matches: 91, Mismatches: 39, Indels: 6
0.67 0.29 0.04
Matches are distributed among these distances:
19 52 0.57
20 39 0.43
ACGTcount: A:0.33, C:0.18, G:0.34, T:0.15
Consensus pattern (19 bp):
AGGGGCACCTAAGTACAAC
Found at i:86178988 original size:78 final size:78
Alignment explanation
Indices: 86178782--86178993 Score: 271
Period size: 78 Copynumber: 2.7 Consensus size: 78
86178772 CACGACACAA
* * * * *
86178782 AAGTGCGATCAAGGATACCGAAGTACAATAGGGGCACAAAATTGCGATTAGGGGTACCAAAGTAC
1 AAGTGCGATCAGGGGTACCGAAGTACAATAGGGGCACATAAGTGCGATCAGGGGTACCAAAGTAC
*
86178847 AACAGGGGCACAT
66 AACAGGGGAACAT
* * * * * *
86178860 AAGTGCGATCAGGGGTATCGAAGTACAATAGGGGCACCTATGTGCAATCAGGGGTGCCGAAGTAC
1 AAGTGCGATCAGGGGTACCGAAGTACAATAGGGGCACATAAGTGCGATCAGGGGTACCAAAGTAC
*
86178925 AACAGGGGAACGT
66 AACAGGGGAACAT
* * * *
86178938 AAGTGTGATCAGGGGTACCGAAGTACAACAGGGGCACGTAAGTACGATCAGGGGTA
1 AAGTGCGATCAGGGGTACCGAAGTACAATAGGGGCACATAAGTGCGATCAGGGGTA
86178994 TCATTATATA
Statistics
Matches: 113, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
78 113 1.00
ACGTcount: A:0.34, C:0.17, G:0.33, T:0.16
Consensus pattern (78 bp):
AAGTGCGATCAGGGGTACCGAAGTACAATAGGGGCACATAAGTGCGATCAGGGGTACCAAAGTAC
AACAGGGGAACAT
Found at i:86185391 original size:25 final size:26
Alignment explanation
Indices: 86185341--86185392 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
86185331 AGTTGTAGAG
86185341 AGAAAATTCTCTAAAGAGATTATTCT
1 AGAAAATTCTCTAAAGAGATTATTCT
* * *
86185367 AGAAAATT-TCTAGAGATATTTTTCT
1 AGAAAATTCTCTAAAGAGATTATTCT
86185392 A
1 A
86185393 ATTTACAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (26 bp):
AGAAAATTCTCTAAAGAGATTATTCT
Found at i:86188521 original size:12 final size:13
Alignment explanation
Indices: 86188485--86188522 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
86188475 AAATATTTTA
86188485 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
86188498 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
86188512 CTTG-TCTTAAT
1 CTTGTTCTTAAT
86188523 ATTCTAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Done.