Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 261 of 343
Found at i:86191610 original size:45 final size:45
Alignment explanation
Indices: 86191540--86191629 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 45
86191530 ATATTCTTGG
* * *
86191540 AATTCAAATCCTTAGGGATCGAAATAATAAAATGATAGCACTATC
1 AATTCAAATCCTTAGGGAACAAAATAATAAAACGATAGCACTATC
* *
86191585 AATTCGAATCCTTTGGGAACAAAATAATAAAACGATAGCACTATC
1 AATTCAAATCCTTAGGGAACAAAATAATAAAACGATAGCACTATC
86191630 TCAAGCTTCA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.44, C:0.17, G:0.13, T:0.26
Consensus pattern (45 bp):
AATTCAAATCCTTAGGGAACAAAATAATAAAACGATAGCACTATC
Found at i:86193421 original size:24 final size:25
Alignment explanation
Indices: 86193394--86193443 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
86193384 GTTTATCTTG
*
86193394 AAGATACATAT-TCTATT-ATTTAAT
1 AAGATAAATATGT-TATTAATTTAAT
86193418 AAGATAAATATGTTATTAATTTAAT
1 AAGATAAATATGTTATTAATTTAAT
86193443 A
1 A
86193444 TTAAAATGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (25 bp):
AAGATAAATATGTTATTAATTTAAT
Found at i:86195411 original size:16 final size:16
Alignment explanation
Indices: 86195370--86195415 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
86195360 TCCCGAACTG
**
86195370 CCGAAAAGCCAAAATA
1 CCGAAAAGCTGAAATA
86195386 CCGAAAAGCTGAAATA
1 CCGAAAAGCTGAAATA
86195402 CCGAAAAGCTGAAA
1 CCGAAAAGCTGAAA
86195416 GTCTGGCTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.52, C:0.22, G:0.17, T:0.09
Consensus pattern (16 bp):
CCGAAAAGCTGAAATA
Found at i:86200432 original size:37 final size:37
Alignment explanation
Indices: 86200374--86200444 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
86200364 TCTCTCCCAA
*
86200374 TGCTTTTAACCATATCCATGCTTTTATCCACTTGTTT
1 TGCTTTTAACCATATCAATGCTTTTATCCACTTGTTT
* * *
86200411 TGCTTTTAACCCTCA-CAATGCTTTTGTTCACTTG
1 TGCTTTTAACCAT-ATCAATGCTTTTATCCACTTG
86200445 AGTATTTTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 28 0.97
38 1 0.03
ACGTcount: A:0.18, C:0.25, G:0.10, T:0.46
Consensus pattern (37 bp):
TGCTTTTAACCATATCAATGCTTTTATCCACTTGTTT
Found at i:86203784 original size:93 final size:93
Alignment explanation
Indices: 86203674--86203844 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
86203664 GCCCCTAAGT
* *
86203674 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
86203739 CGAGTTCAGATGCCTAGTTACATTTCAC
66 CGAGTTCAGATGCCTAGTTACATTTCAC
* *
86203767 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
86203832 CGAGTTCGGATGC
66 CGAGTTCAGATGC
86203845 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:86203841 original size:46 final size:46
Alignment explanation
Indices: 86203669--86203841 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
86203659 AACCCGCCCC
* * *
86203669 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * * *
86203715 TAAATGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTCGCATCCA
* *
86203763 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
86203808 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86203842 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:86209784 original size:124 final size:123
Alignment explanation
Indices: 86209566--86209817 Score: 409
Period size: 124 Copynumber: 2.0 Consensus size: 123
86209556 CGGTTGTTAC
**
86209566 AAGTTCCTTTTGCTTCGACAGTAAGAAGTCTCATGTATTTATTTTATACACATGCCAAAAAATCT
1 AAGTTCCTTTTGCTTCGACAGTAAGAAGTCTCATGTAGCTATTTTATACACATGCCAAAAAATCT
*
86209631 ATTTTGAAGTGGGGTTGGTAAGTCAATATTAGGC-AAATCTTGGACCAAGACACTGAT
66 ATTTTGAAGTGGGGTTGGTAAGTCAATATTAGGCAAAACCTTGGACCAAGACACTGAT
* *
86209688 AAGTTCCTTTTGCTTCGATTAGTAAGAAGTCTCATGTAGGCTATTTTATACACATGCCAAAATAT
1 AAGTTCCTTTTGCTTCGA-CAGTAAGAAGTCTCATGTA-GCTATTTTATACACATGCCAAAAAAT
*
86209753 CTATTTTGCAG-GGCGGTTGGTAAGTCAATATTAGGCAAAACCTTGGACCAAGACACTGAT
64 CTATTTTGAAGTGG-GGTTGGTAAGTCAATATTAGGCAAAACCTTGGACCAAGACACTGAT
86209813 AAGTT
1 AAGTT
86209818 GTTAAGCATA
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
122 18 0.15
123 20 0.17
124 55 0.46
125 27 0.22
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (123 bp):
AAGTTCCTTTTGCTTCGACAGTAAGAAGTCTCATGTAGCTATTTTATACACATGCCAAAAAATCT
ATTTTGAAGTGGGGTTGGTAAGTCAATATTAGGCAAAACCTTGGACCAAGACACTGAT
Found at i:86220546 original size:93 final size:93
Alignment explanation
Indices: 86220434--86220605 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
86220424 GCCCATAAGT
* *
86220434 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86220499 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
86220527 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
86220592 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
86220606 CAAATCCTAG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:86220601 original size:46 final size:46
Alignment explanation
Indices: 86220426--86220601 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
86220416 TGTAACCCGC
* *
86220426 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
86220472 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
86220518 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
86220565 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
86220602 TGCCCAAATC
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:86222960 original size:14 final size:14
Alignment explanation
Indices: 86222941--86223000 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
86222931 CAAAGATAAC
86222941 AAGAAAACCGAATA
1 AAGAAAACCGAATA
* *
86222955 AAGAAATCC-AAGA
1 AAGAAAACCGAATA
*
86222968 TAGAGAAACCGAATA
1 AAGA-AAACCGAATA
*
86222983 AA-AAATCCAGAATA
1 AAGAAAACC-GAATA
86222997 AAGA
1 AAGA
86223001 GATCCAGGAT
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
13 10 0.29
14 20 0.57
15 5 0.14
ACGTcount: A:0.62, C:0.13, G:0.15, T:0.10
Consensus pattern (14 bp):
AAGAAAACCGAATA
Found at i:86223007 original size:15 final size:15
Alignment explanation
Indices: 86222941--86223017 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
86222931 CAAAGATAAC
*
86222941 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
86222955 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
86222970 GAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
86222983 AA-AAATCCAGAATA
1 AAGAAATCCAGAATA
* *
86222997 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
86223012 AAGAAA
1 AAGAAA
86223018 CCCAAGATAC
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
12 3 0.06
13 6 0.12
14 19 0.37
15 23 0.45
ACGTcount: A:0.60, C:0.13, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:86223026 original size:15 final size:15
Alignment explanation
Indices: 86222952--86223026 Score: 68
Period size: 15 Copynumber: 5.2 Consensus size: 15
86222942 AGAAAACCGA
86222952 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
86222967 ATAGAGAAA-CCGA-
1 ATAAAGAAATCCAAG
86222980 ATAAA-AAATCC-AG
1 ATAAAGAAATCCAAG
* *
86222993 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
86223009 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
86223024 ATA
1 ATA
86223027 CGATACTATG
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
12 4 0.09
13 6 0.13
14 8 0.17
15 28 0.60
16 1 0.02
ACGTcount: A:0.57, C:0.15, G:0.16, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:86226031 original size:93 final size:93
Alignment explanation
Indices: 86225919--86226090 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
86225909 GCCCATAAGT
* *
86225919 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86225984 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
86226012 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
86226077 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
86226091 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:86226086 original size:46 final size:46
Alignment explanation
Indices: 86225911--86226086 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
86225901 TGTAACCCGC
* *
86225911 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
86225957 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
86226003 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
86226050 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
86226087 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:86229946 original size:123 final size:123
Alignment explanation
Indices: 86229727--86229977 Score: 466
Period size: 123 Copynumber: 2.0 Consensus size: 123
86229717 TATGCTTAAC
*
86229727 AACTTATCAGTGTCTTGGTCCAAGGTTTGCCTAATATTGACTTACCAACCCCACTGCAAAATAGA
1 AACTTATCAGTGTCTTGGTCCAAGATTTGCCTAATATTGACTTACCAACCCCACTGCAAAATAGA
*
86229792 TATTTTGGCATGTGTATAAAATAGCATACATGAGACTTCTTACTATCGAAGCAAAAGG
66 TATTTTGGCATGTGTATAAAATAACATACATGAGACTTCTTACTATCGAAGCAAAAGG
*
86229850 AACTTATCAGTGTCTTGGTCCAAGATTTGCCTAATATTGACTTACCAACCCCACTTCAAAATAGA
1 AACTTATCAGTGTCTTGGTCCAAGATTTGCCTAATATTGACTTACCAACCCCACTGCAAAATAGA
*
86229915 TATTTTGGCATGTGTATAAAATAACATACATGAGACTTCTTACTGTCGAAGCAAAAGG
66 TATTTTGGCATGTGTATAAAATAACATACATGAGACTTCTTACTATCGAAGCAAAAGG
86229973 AACTT
1 AACTT
86229978 GTAACAACCC
Statistics
Matches: 124, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
123 124 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (123 bp):
AACTTATCAGTGTCTTGGTCCAAGATTTGCCTAATATTGACTTACCAACCCCACTGCAAAATAGA
TATTTTGGCATGTGTATAAAATAACATACATGAGACTTCTTACTATCGAAGCAAAAGG
Found at i:86235775 original size:10 final size:10
Alignment explanation
Indices: 86235756--86235805 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
86235746 TGAAATTCTA
86235756 AAAGATAAAT
1 AAAGATAAAT
86235766 ACAA-ATAAAT
1 A-AAGATAAAT
*
86235776 AAAGATAATT
1 AAAGATAAAT
86235786 AAAGATAAAT
1 AAAGATAAAT
86235796 GAAA-ATAAAT
1 -AAAGATAAAT
86235806 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:86236460 original size:16 final size:17
Alignment explanation
Indices: 86236434--86236472 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
86236424 CTTTTTTTTC
*
86236434 TATTTATTTTATTAATT
1 TATTTAATTTATTAATT
*
86236451 T-TTTAATTTATTTATT
1 TATTTAATTTATTAATT
86236467 TATTTA
1 TATTTA
86236473 TTGTTGCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TATTTAATTTATTAATT
Found at i:86237951 original size:26 final size:26
Alignment explanation
Indices: 86237872--86237952 Score: 110
Period size: 26 Copynumber: 3.1 Consensus size: 26
86237862 AACACACCAA
*
86237872 TATCGCAACAAAGCTGCCAGTATCAG
1 TATCGCAACAAAGCTGCCAGTATAAG
*
86237898 TAACGCAACAAAGCTGCCAGTA-ATAG
1 TATCGCAACAAAGCTGCCAGTATA-AG
* *
86237924 TATCGCAGCAAAGCTGCCTGTATAAG
1 TATCGCAACAAAGCTGCCAGTATAAG
86237950 TAT
1 TAT
86237953 ATGTGGCCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (26 bp):
TATCGCAACAAAGCTGCCAGTATAAG
Found at i:86238947 original size:21 final size:21
Alignment explanation
Indices: 86238921--86238962 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
86238911 CCATTCGGCC
86238921 AAAAACCCATGCCAGCATAAT
1 AAAAACCCATGCCAGCATAAT
86238942 AAAAACCCATGCCAGCATAAT
1 AAAAACCCATGCCAGCATAAT
86238963 CTAGTTTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.29, G:0.10, T:0.14
Consensus pattern (21 bp):
AAAAACCCATGCCAGCATAAT
Found at i:86240763 original size:13 final size:12
Alignment explanation
Indices: 86240741--86240772 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
86240731 TATCCAAAAT
86240741 ATAAAATAATAA
1 ATAAAATAATAA
86240753 ATAATAATAATAA
1 ATAA-AATAATAA
86240766 ATAAAAT
1 ATAAAAT
86240773 TGGGTTGCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
ATAAAATAATAA
Found at i:86244248 original size:20 final size:19
Alignment explanation
Indices: 86244225--86244284 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 19
86244215 TTAAATTCTA
86244225 AAAGATAAATACAAATAAAT
1 AAAGATAAATA-AAATAAAT
* *
86244245 AAAGATAATTAAAGATAATT
1 AAAGATAAATAAA-ATAAAT
*
86244265 ACAGATAAATGAAAATAAAT
1 AAAGATAAAT-AAAATAAAT
86244285 CCTAAAATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 2 0.06
20 28 0.85
21 3 0.09
ACGTcount: A:0.65, C:0.03, G:0.08, T:0.23
Consensus pattern (19 bp):
AAAGATAAATAAAATAAAT
Found at i:86244259 original size:30 final size:30
Alignment explanation
Indices: 86244225--86244282 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
86244215 TTAAATTCTA
86244225 AAAGATAAATACAAATAAAT-AAAGATAATT
1 AAAGATAAATACAAATAAATGAAA-ATAATT
* *
86244255 AAAGATAATTACAGATAAATGAAAATAA
1 AAAGATAAATACAAATAAATGAAAATAA
86244283 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.66, C:0.03, G:0.09, T:0.22
Consensus pattern (30 bp):
AAAGATAAATACAAATAAATGAAAATAATT
Found at i:86248559 original size:28 final size:27
Alignment explanation
Indices: 86248491--86248578 Score: 133
Period size: 27 Copynumber: 3.2 Consensus size: 27
86248481 GGAGGAAGCG
86248491 TTCTGGTGGCTCTGCCAAAAATATCTG-
1 TTCTGGTGGCTCTGCC-AAAATATCTGT
*
86248518 ATCTGGTGGCTCTGCCATAAATATCTGT
1 TTCTGGTGGCTCTGCCA-AAATATCTGT
*
86248546 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTCTGCCAAAATATCTGT
86248573 TTCTGG
1 TTCTGG
86248579 CAGCCATGCT
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
26 1 0.02
27 39 0.70
28 16 0.29
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCAAAATATCTGT
Found at i:86252642 original size:38 final size:38
Alignment explanation
Indices: 86252598--86252751 Score: 184
Period size: 38 Copynumber: 4.0 Consensus size: 38
86252588 ATATGCTAGA
*
86252598 ATTATATACGGGTTAAATCCCGCAAGCTTCGTGCTGGT
1 ATTATATACGGGTTAAATCCCGCAGGCTTCGTGCTGGT
* *
86252636 AATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
1 ATTATATACGGGTTAAATCCCGCAGGCTTCGTGCTGGT
* * * *
86252674 ATTATATATGGGTTAAATCCTGCAGGCCTAGTGCTGGT
1 ATTATATACGGGTTAAATCCCGCAGGCTTCGTGCTGGT
* * *
86252712 ATTATAT-CTGAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 ATTATATAC-G-GGTTAAA-TCCCGCAGGCTTCGTGCTGGT
86252752 GACTGGATTC
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 75 0.77
39 6 0.06
40 17 0.17
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (38 bp):
ATTATATACGGGTTAAATCCCGCAGGCTTCGTGCTGGT
Found at i:86252661 original size:76 final size:77
Alignment explanation
Indices: 86252562--86252739 Score: 207
Period size: 76 Copynumber: 2.3 Consensus size: 77
86252552 ATTTGATGTG
* *
86252562 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTAGAATTATATACGGGTTAAATCCCGCAAGCT
1 TATCCGGG-TTAAAGTCCCGCAGGCT-TCATGCTAGAATTATATACGGGTTAAATCCCGCAAGCC
*
86252626 TCGTGCTGGTAATA
64 TAGTGCTGGTAATA
* * * * * *
86252640 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATATGGGTTAAATCCTGCAGGCCTA
1 TATCCGGGTTAAAGTCCCGCAGGCTTCATGCTAGAATTATATACGGGTTAAATCCCGCAAGCCTA
*
86252704 GTGCTGGTATTA
66 GTGCTGGTAATA
* *
86252716 TATCTGAGCTTAAAGTCCCGCAGG
1 TATCCG-GGTTAAAGTCCCGCAGG
86252740 TTTTGTGCTG
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
75 1 0.01
76 56 0.66
77 11 0.13
78 17 0.20
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (77 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTCATGCTAGAATTATATACGGGTTAAATCCCGCAAGCCTA
GTGCTGGTAATA
Found at i:86258786 original size:5 final size:5
Alignment explanation
Indices: 86258778--86258838 Score: 56
Period size: 5 Copynumber: 12.4 Consensus size: 5
86258768 TTTATTTATA
* *
86258778 ATAAT ATAAT ATAAT ATAAT -TAAT ATAAT TTAAA AT-AT GAT-AT AATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT -ATAAT
*
86258827 ATAAT TTAAT AT
1 ATAAT ATAAT AT
86258839 TTAACCAACA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
4 5 0.11
5 39 0.85
6 2 0.04
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (5 bp):
ATAAT
Found at i:86260467 original size:101 final size:101
Alignment explanation
Indices: 86260287--86260490 Score: 345
Period size: 101 Copynumber: 2.0 Consensus size: 101
86260277 ACTGACAAGT
* * *
86260287 CAGGCATTTACTAACAAATTCAACTATATCTTTCTTCATCCCTGGCCACTAATACAATTCTCGTA
1 CAGGCATTTACTAACAAATTCAACTATATCTTTCTGCATCCCTAGCCACTAATACAATTCTCGCA
* *
86260352 GGTCACAATACATCTTTATTTCACCAAGGTGCAAAG
66 AGTCACAATACATCTTTATTTCACCAAGGTACAAAG
* *
86260388 CAGGGATTTACTAACACATTCAACTATATCTTTCTGCATCCCTAGCCACTAATACAATTCTCGCA
1 CAGGCATTTACTAACAAATTCAACTATATCTTTCTGCATCCCTAGCCACTAATACAATTCTCGCA
86260453 AGTCACAATACATCTTTATTTCACCAAGGTACAAAG
66 AGTCACAATACATCTTTATTTCACCAAGGTACAAAG
86260489 CA
1 CA
86260491 AAAGCGTTAT
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 96 1.00
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.30
Consensus pattern (101 bp):
CAGGCATTTACTAACAAATTCAACTATATCTTTCTGCATCCCTAGCCACTAATACAATTCTCGCA
AGTCACAATACATCTTTATTTCACCAAGGTACAAAG
Found at i:86264728 original size:5 final size:5
Alignment explanation
Indices: 86264720--86264748 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
86264710 TTTATTTATA
86264720 ATAAT ATAAT ATAAT ATAAT -TAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
86264749 TTAAAATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:86264762 original size:26 final size:25
Alignment explanation
Indices: 86264727--86264777 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
86264717 ATAATAATAT
86264727 AATATAATATAATTAATATAATTTAA
1 AATATAATATAA-TAATATAATTTAA
* *
86264753 AATATGATATAATAATATTATTTAA
1 AATATAATATAATAATATAATTTAA
86264778 TATTTAACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (25 bp):
AATATAATATAATAATATAATTTAA
Found at i:86268282 original size:27 final size:27
Alignment explanation
Indices: 86268263--86268554 Score: 359
Period size: 27 Copynumber: 10.8 Consensus size: 27
86268253 ATTACCAAAG
86268263 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
86268290 TACCCTCGATTTACAGAGTTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
86268317 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
86268344 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
86268371 TACTCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
86268398 TACCCTCAATTCACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
86268425 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
** * *
86268452 TACCCTTAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* ** *
86268479 TACCTTTAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
86268506 TACCCTCGATTTAAAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
86268533 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
86268555 TGAAATACCC
Statistics
Matches: 234, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 234 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:86268354 original size:81 final size:81
Alignment explanation
Indices: 86268263--86268554 Score: 422
Period size: 81 Copynumber: 3.6 Consensus size: 81
86268253 ATTACCAAAG
* * * * *
86268263 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAGTTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCAATT
* *
86268328 TATAGAATTACCATTT
66 TACAGAATTACCGTTT
*
86268344 TACCCTCGATTTATAGAATTACCGTTTTACTCTCAATTTACAGAATTACCATTTTACCCTCAATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCAATT
* *
86268409 CACAAAATTACCGTTT
66 TACAGAATTACCGTTT
* * * * * *
86268425 TACCCTCGATTTATAGAATTATCGTTTTACCCTTAATTTACAAAATTACCGTTTTACCTTTAATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCAATT
86268490 TACAGAATTACCGTTT
66 TACAGAATTACCGTTT
* *
86268506 TACCCTCGATTTAAAGAATTACCGTTTTACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTAC
86268555 TGAAATACCC
Statistics
Matches: 189, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 189 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCAATT
TACAGAATTACCGTTT
Found at i:86268596 original size:81 final size:80
Alignment explanation
Indices: 86268238--86268583 Score: 368
Period size: 81 Copynumber: 4.3 Consensus size: 80
86268228 TACTGAAATG
* * *** * * *
86268238 CCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA
1 CCCTTAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTA
* * *
86268303 CAGAGTTACCATTTTA
66 CAAAATTACGA-TTTA
** * *
86268319 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACTCTCAATTTA
1 CCCTTAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTA
* *
86268384 CAGAATTACCATTTTA
66 CAAAATTACGA-TTTA
* * * * * *
86268400 CCCTCAATTCACAAAATTACCGTTTTACCCTCGATTTATAGAATTATCGTTTTACCCTTAATTTA
1 CCCTTAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTA
*
86268465 CAAAATTACCGTTTTA
66 CAAAATTA-CGATTTA
* * * * *
86268481 CCTTTAATTTACAGAATTACCGTTTTACCCTCGATTTAAAGAATTACCGTTTTACCCTCAATTTA
1 CCCTTAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTA
**
86268546 CAAAATTACTGAAATA
66 CAAAATTAC-GATTTA
*
86268562 CCCTTAGTTTATAAAATTACCA
1 CCCTTAATTTATAAAATTACCA
86268584 AAATACCCTC
Statistics
Matches: 226, Mismatches: 37, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
80 1 0.00
81 224 0.99
82 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (80 bp):
CCCTTAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTA
CAAAATTACGATTTA
Found at i:86268674 original size:27 final size:27
Alignment explanation
Indices: 86268547--86268781 Score: 190
Period size: 27 Copynumber: 8.7 Consensus size: 27
86268537 CTCAATTTAC
** * * *
86268547 AAAATTACTGAAATACCCTTAGTTTAT
1 AAAATTACCAAAATACCCCTGGTTTGT
* **
86268574 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
*
86268601 AAAATTACCAAAATACCCATGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * *
86268628 AAAATTACTAAAATATCCCTCGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
86268655 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
86268682 AAAATTACTAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * * * *
86268709 GAAATTATCGAAATA-CTCTGGATTTGC
1 AAAATTACCAAAATACCCCTGG-TTTGT
* **
86268736 AAAA-TATCAAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTGGT-TTGT
* *
86268762 AGAATTACCGAAATACCCCT
1 AAAATTACCAAAATACCCCT
86268782 ATAGGGTAGA
Statistics
Matches: 163, Mismatches: 39, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
25 1 0.01
26 21 0.13
27 138 0.85
28 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:86268723 original size:81 final size:81
Alignment explanation
Indices: 86268547--86268755 Score: 219
Period size: 81 Copynumber: 2.6 Consensus size: 81
86268537 CTCAATTTAC
* * * *
86268547 AAAATTACTGAAATACCCTTAGTTTATAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCC-TCGTTTGTAAAATTACCAAAATACCCCTGGATCAGTAAAATTACCA
*
86268611 AAATACCCATGGTTTGT
65 AAATACCCATGATTTGT
* * *
86268628 AAAATTACTAAAATATCCCTCGTTTGTAAAATTACCAAAATACCCCTGGCT-TGTAAAATTACTA
1 AAAATTACTAAAATA-CCCTCGTTTGTAAAATTACCAAAATACCCCTGGATCAGTAAAATTACCA
*
86268692 AAATACCCCTGATTTGT
65 AAATACCCATGATTTGT
* * * * * *
86268709 GAAATTA-TCGAAATACTCTGGATTTGCAAAA-TATCAAAATACCCCTG
1 AAAATTACT-AAAATACCCTCG-TTTGTAAAATTACCAAAATACCCCTG
86268756 TAGGGTAGAA
Statistics
Matches: 109, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
80 20 0.18
81 80 0.73
82 9 0.08
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTCGTTTGTAAAATTACCAAAATACCCCTGGATCAGTAAAATTACCAA
AATACCCATGATTTGT
Found at i:86268740 original size:54 final size:54
Alignment explanation
Indices: 86268547--86268754 Score: 210
Period size: 54 Copynumber: 3.9 Consensus size: 54
86268537 CTCAATTTAC
** * * * **
86268547 AAAATTACTGAAATACCCTTAGTTTATAAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCC-TGGTTTGTAAAATTACTAAAATACCCCTCGATTTGT
*
86268601 AAAATTACCAAAATACCCATGGTTTGTAAAATTACTAAAATATCCCTCG-TTTGT
1 AAAATTACCAAAATACCC-TGGTTTGTAAAATTACTAAAATACCCCTCGATTTGT
*
86268655 AAAATTACCAAAATACCCCTGGCTTGTAAAATTACTAAAATACCCCT-GATTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGTAAAATTACTAAAATACCCCTCGATTTGT
* * * * *
86268709 GAAATTATCGAAATACTCTGGATTTGCAAAA-TA-TCAAAATACCCCT
1 AAAATTACCAAAATACCCTGG-TTTGTAAAATTACT-AAAATACCCCT
86268755 GTAGGGTAGA
Statistics
Matches: 133, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
52 1 0.01
53 19 0.14
54 104 0.78
55 9 0.07
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTGGTTTGTAAAATTACTAAAATACCCCTCGATTTGT
Found at i:86268786 original size:27 final size:27
Alignment explanation
Indices: 86268745--86268878 Score: 196
Period size: 27 Copynumber: 5.0 Consensus size: 27
86268735 CAAAATATCA
86268745 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
86268772 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
86268799 AAATACCCTTGTAAGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
86268826 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
86268853 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
86268879 ATTTTTCCCC
Statistics
Matches: 95, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:86269117 original size:25 final size:24
Alignment explanation
Indices: 86269083--86269152 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
86269073 AGGAAGTGCT
*
86269083 AAAAGGGCTTTGCCCCAGTTTACC
1 AAAAAGGCTTTGCCCCAGTTTACC
* *
86269107 GAAAAAGGCTTTGCCCCAATTTATC
1 -AAAAAGGCTTTGCCCCAGTTTACC
86269132 AAAAAGGGCTTTGCCCCAGTT
1 AAAAA-GGCTTTGCCCCAGTT
86269153 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 5 0.12
25 35 0.88
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTACC
Found at i:86269165 original size:24 final size:23
Alignment explanation
Indices: 86269082--86269179 Score: 79
Period size: 25 Copynumber: 4.0 Consensus size: 23
86269072 GAGGAAGTGC
* *
86269082 TAAAAGGGCTTTGCCCCAGTTTACC
1 TAAAAAGGCTTTGCCCCAG-TTA-T
* *
86269107 GAAAAAGGCTTTGCCCCAATTTAT
1 TAAAAAGGCTTTGCCCC-AGTTAT
*
86269131 CAAAAAGGGCTTTGCCCCAGTTAT
1 TAAAAA-GGCTTTGCCCCAGTTAT
**
86269155 TAAAAGAGGCTAGGCCTCCAGTTAT
1 TAAAA-AGGCTTTGCC-CCAGTTAT
86269180 ATGATAAAGC
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
24 21 0.35
25 38 0.63
26 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (23 bp):
TAAAAAGGCTTTGCCCCAGTTAT
Found at i:86271364 original size:21 final size:21
Alignment explanation
Indices: 86271338--86271380 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
86271328 TCTCATACCT
86271338 TACCTCCAGATCTTGAACTGC
1 TACCTCCAGATCTTGAACTGC
86271359 TACCTCCAGATCTTGAACTGC
1 TACCTCCAGATCTTGAACTGC
86271380 T
1 T
86271381 TGTTCCCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.30
Consensus pattern (21 bp):
TACCTCCAGATCTTGAACTGC
Found at i:86276176 original size:15 final size:14
Alignment explanation
Indices: 86276158--86276199 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 14
86276148 AATATTAAAA
86276158 TTTTAAGTTTTTAAGT
1 TTTTAA-TTTTTAA-T
86276174 TTTTAATTTTTAAT
1 TTTTAATTTTTAAT
86276188 TTTTCAATTTTT
1 TTTT-AATTTTT
86276200 TTGAAGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.20
15 14 0.56
16 6 0.24
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (14 bp):
TTTTAATTTTTAAT
Found at i:86276198 original size:7 final size:7
Alignment explanation
Indices: 86276158--86276199 Score: 57
Period size: 8 Copynumber: 5.6 Consensus size: 7
86276148 AATATTAAAA
86276158 TTTTAAGT
1 TTTTAA-T
86276166 TTTTAAGT
1 TTTTAA-T
86276174 TTTTAAT
1 TTTTAAT
86276181 TTTTAAT
1 TTTTAAT
86276188 TTTTCAAT
1 TTTT-AAT
86276196 TTTT
1 TTTT
86276200 TTGAAGATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 12 0.36
8 21 0.64
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (7 bp):
TTTTAAT
Found at i:86277455 original size:41 final size:41
Alignment explanation
Indices: 86277341--86277583 Score: 217
Period size: 40 Copynumber: 6.0 Consensus size: 41
86277331 TCTAAACCCT
* * * *
86277341 AAACCTCAATCTATAGTGGCATTTTTCCAAAAGCGTCGCTA
1 AAACCTCGATCTATAGCGGCGTTTTTCCAAAAGCGCCGCTA
* * *
86277382 AAAACT-GAGT-AATAGCGGTGTTTTTCCAAAAGCGCCGCTA
1 AAACCTCGA-TCTATAGCGGCGTTTTTCCAAAAGCGCCGCTA
* * * *
86277422 AAACCTCGATCTATAGTGGTGTTTTTCCAAAAGCCCCGATA
1 AAACCTCGATCTATAGCGGCGTTTTTCCAAAAGCGCCGCTA
* * * * *
86277463 AAA-ATTGAGCAATAGCGGCGTTTTTCTAAAAGCGCCGCTA
1 AAACCTCGATCTATAGCGGCGTTTTTCCAAAAGCGCCGCTA
* *
86277503 AAACCTCGATCTATAACGGCGGTTTTT-CAAAAGCACCGCTA
1 AAACCTCGATCTATAGCGGC-GTTTTTCCAAAAGCGCCGCTA
* * * * * *
86277544 AAAACT-GAGCAATAGCGGCGTTTCTCCAAAAACACCGCTA
1 AAACCTCGATCTATAGCGGCGTTTTTCCAAAAGCGCCGCTA
86277584 TTGTTCAGTT
Statistics
Matches: 162, Mismatches: 34, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
39 5 0.03
40 86 0.53
41 65 0.40
42 6 0.04
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (41 bp):
AAACCTCGATCTATAGCGGCGTTTTTCCAAAAGCGCCGCTA
Found at i:86277477 original size:81 final size:81
Alignment explanation
Indices: 86277341--86277583 Score: 326
Period size: 81 Copynumber: 3.0 Consensus size: 81
86277331 TCTAAACCCT
* * ** * *
86277341 AAACCTCAATCTATAGTGGCATTTTTCCAAAAGCGTCGCTAAAAACTGAGTAATAGCGGTGTTTT
1 AAACCTCGATCTATAGTGGCGTTTTTCCAAAAGCACCGCTAAAAACTGAGCAATAGCGGCGTTTT
86277406 TCCAAAAGCGCCGCTA
66 TCCAAAAGCGCCGCTA
* * * *
86277422 AAACCTCGATCTATAGTGGTGTTTTTCCAAAAGCCCCGATAAAAATTGAGCAATAGCGGCGTTTT
1 AAACCTCGATCTATAGTGGCGTTTTTCCAAAAGCACCGCTAAAAACTGAGCAATAGCGGCGTTTT
*
86277487 TCTAAAAGCGCCGCTA
66 TCCAAAAGCGCCGCTA
**
86277503 AAACCTCGATCTATAACGGCGGTTTTT-CAAAAGCACCGCTAAAAACTGAGCAATAGCGGCGTTT
1 AAACCTCGATCTATAGTGGC-GTTTTTCCAAAAGCACCGCTAAAAACTGAGCAATAGCGGCGTTT
* * *
86277567 CTCCAAAAACACCGCTA
65 TTCCAAAAGCGCCGCTA
86277584 TTGTTCAGTT
Statistics
Matches: 141, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
81 135 0.96
82 6 0.04
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (81 bp):
AAACCTCGATCTATAGTGGCGTTTTTCCAAAAGCACCGCTAAAAACTGAGCAATAGCGGCGTTTT
TCCAAAAGCGCCGCTA
Found at i:86277602 original size:40 final size:41
Alignment explanation
Indices: 86277558--86277647 Score: 119
Period size: 41 Copynumber: 2.2 Consensus size: 41
86277548 CTGAGCAATA
* *
86277558 GCGGCGTTT-CTCCAAAAACACCGCTATTGTTCAGTTTTTC
1 GCGGCGTTTGCACCAAAAACACCGCTATTGCTCAGTTTTTC
* * *
86277598 GCGGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTT
1 GCGGCGTTTGCACCAAAAACACCGCTATTGCTCAGTTTTTC
*
86277639 GTGGCGTTT
1 GCGGCGTTT
86277648 TCAATAAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 9 0.21
41 34 0.79
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.34
Consensus pattern (41 bp):
GCGGCGTTTGCACCAAAAACACCGCTATTGCTCAGTTTTTC
Found at i:86277623 original size:41 final size:41
Alignment explanation
Indices: 86277569--86277647 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
86277559 CGGCGTTTCT
*
86277569 CCAAAAACACCGCTATTGTTCAGTTTTTCGCGGCGTTTGGA
1 CCAAAAACACCGCTATTGCTCAGTTTTTCGCGGCGTTTGGA
* * *
86277610 CCAAAAACGCCGCTATTGCTCAGTTTTTTGTGGCGTTT
1 CCAAAAACACCGCTATTGCTCAGTTTTTCGCGGCGTTT
86277648 TCAATAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (41 bp):
CCAAAAACACCGCTATTGCTCAGTTTTTCGCGGCGTTTGGA
Found at i:86280314 original size:19 final size:19
Alignment explanation
Indices: 86280287--86280325 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
86280277 TTCTAGAAAA
*
86280287 AGAATTATGAGTAAGTCAC
1 AGAACTATGAGTAAGTCAC
86280306 AGAACTATGAGTAAGTCAC
1 AGAACTATGAGTAAGTCAC
86280325 A
1 A
86280326 ATCATTTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.23
Consensus pattern (19 bp):
AGAACTATGAGTAAGTCAC
Found at i:86284705 original size:17 final size:18
Alignment explanation
Indices: 86284679--86284712 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
86284669 GGTAAATTTA
86284679 GGACGCGTGGG-CCACAC
1 GGACGCGTGGGTCCACAC
*
86284696 GGACGTGTGGGTCCACA
1 GGACGCGTGGGTCCACA
86284713 TGGGCGTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.18, C:0.29, G:0.41, T:0.12
Consensus pattern (18 bp):
GGACGCGTGGGTCCACAC
Found at i:86291571 original size:27 final size:26
Alignment explanation
Indices: 86291532--86291636 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 26
86291522 GGAAGCGTCC
*
86291532 TGGTGGCTATGCCACAATTATCTGATT
1 TGGTGGCTCTGCCAC-ATTATCTGATT
*
86291559 TGGTGGCTCTGCCACATATAACTG-TT
1 TGGTGGCTCTGCCACAT-TATCTGATT
*
86291585 CTGGTGGCTCTGCCACGATTATCTGTATC
1 -TGGTGGCTCTGCCAC-ATTATCTG-ATT
* *
86291614 TGGTGACTCTGTCACATTATCTG
1 TGGTGGCTCTGCCACATTATCTG
86291637 TTCTGGCAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
26 4 0.06
27 47 0.70
28 15 0.22
29 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTGATT
Found at i:86291638 original size:54 final size:54
Alignment explanation
Indices: 86291531--86291642 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
86291521 AGGAAGCGTC
* *
86291531 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATAACTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATAACTGTT
* * * *
86291585 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATAACTGTT
86291639 CTGG
1 CTGG
86291643 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATAACTGTT
Found at i:86297682 original size:7 final size:7
Alignment explanation
Indices: 86297670--86297724 Score: 83
Period size: 7 Copynumber: 7.9 Consensus size: 7
86297660 AGTTAACACT
86297670 CTAAACC
1 CTAAACC
86297677 CTAAACC
1 CTAAACC
* *
86297684 CTAGATC
1 CTAAACC
*
86297691 CTAAATC
1 CTAAACC
86297698 CTAAACC
1 CTAAACC
86297705 CTAAACC
1 CTAAACC
86297712 CTAAACC
1 CTAAACC
86297719 CTAAAC
1 CTAAAC
86297725 TGGGATTTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 44 1.00
ACGTcount: A:0.42, C:0.38, G:0.02, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:86298515 original size:31 final size:31
Alignment explanation
Indices: 86298479--86298568 Score: 108
Period size: 31 Copynumber: 2.9 Consensus size: 31
86298469 ATTAGAACTA
* * *
86298479 GAATCAGAATTAGGTGACAGAATCAGAATCG
1 GAATCAGAATCAGGTAACAGAATCAAAATCG
* *
86298510 GAATCAGCATCAGGTAACAGAATCAAAATCA
1 GAATCAGAATCAGGTAACAGAATCAAAATCG
* * *
86298541 AAATCAGTATCAGGTAATAGAATCAAAA
1 GAATCAGAATCAGGTAACAGAATCAAAA
86298569 ATCAGAATGT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
GAATCAGAATCAGGTAACAGAATCAAAATCG
Found at i:86298750 original size:27 final size:26
Alignment explanation
Indices: 86298711--86298814 Score: 109
Period size: 27 Copynumber: 3.9 Consensus size: 26
86298701 CTGCTCAGTT
* * *
86298711 ATCAGATACTGTGACAGAGTCACCAG
1 ATCAGATATTGTGGCAGAGCCACCAG
86298737 ATTCAGATATTGTGGCAGAGCCACCAG
1 A-TCAGATATTGTGGCAGAGCCACCAG
* *
86298764 AACAGATATTTGTGGCATAGCCACCAG
1 ATCAGATA-TTGTGGCAGAGCCACCAG
* * *
86298791 AAACAGATAATGTGGCAAAGCCAC
1 -ATCAGATATTGTGGCAGAGCCAC
86298815 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
ATCAGATATTGTGGCAGAGCCACCAG
Found at i:86299007 original size:22 final size:22
Alignment explanation
Indices: 86298973--86299037 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
86298963 GCAAATACGT
* *
86298973 TTGGCAGACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
86298995 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
86299017 TTGACACAAAGCTATAATCAG
1 TTGGCACAAAGCCATAATCAG
86299038 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:86299502 original size:27 final size:27
Alignment explanation
Indices: 86299468--86299845 Score: 483
Period size: 27 Copynumber: 14.0 Consensus size: 27
86299458 CAAAATGATA
* * *
86299468 ATTT-TACCCCACGAGGGTATCTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
** * *
86299494 AACTCTACCCTACAGGGGTATTTCGAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
86299521 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * **
86299548 ATTTCTATCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
86299575 AATTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
86299602 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
86299629 ATTTC-ATCCCTACAAGGGTATTTCGGT
1 ATTTCTA-CCCTACAAGGGTATTTCGGT
* *
86299656 AATTCTACCCTAC-TGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGG-TATTTCGGT
86299683 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
86299710 ATTTCAACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
86299737 AATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * **
86299764 AATTCTACCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
86299791 AATTCTATCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
86299818 ATTTCTACCCTGCAAGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
86299845 A
1 A
86299846 ATTTTACAAA
Statistics
Matches: 308, Mismatches: 39, Indels: 9
0.87 0.11 0.03
Matches are distributed among these distances:
26 6 0.02
27 298 0.97
28 4 0.01
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.36
Consensus pattern (27 bp):
ATTTCTACCCTACAAGGGTATTTCGGT
Found at i:86299864 original size:27 final size:27
Alignment explanation
Indices: 86299834--86299903 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
86299824 ACCCTGCAAG
86299834 GGTATTTTGGTAATTTTACAAACTAGA
1 GGTATTTTGGTAATTTTACAAACTAGA
* *
86299861 GGTATTTGGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGA
*
86299888 GGCATTTTGGTAATTT
1 GGTATTTTGGTAATTT
86299904 GGTAAACTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGA
Found at i:86308164 original size:48 final size:48
Alignment explanation
Indices: 86308048--86308280 Score: 286
Period size: 48 Copynumber: 4.8 Consensus size: 48
86308038 TAAGATACCA
* * * **
86308048 ATGCCATGTCCCAGACATGGTTTTACATTAGCTCTCATATATAGGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA-G-GCCG
* * * * *
86308098 ATGCCATGTTCCAAACATGGTCTTGCACTAGCCCACATGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCCG
* * * *
86308146 ATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCCG
*
86308194 ATGTCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCCG
* * *
86308242 ATACCATGTCCCAGACATTGTCTTACACTAGCTCTCATA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
86308281 ACCCTAGTAT
Statistics
Matches: 155, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
48 121 0.78
49 1 0.01
50 33 0.21
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCCG
Found at i:86308237 original size:96 final size:97
Alignment explanation
Indices: 86308048--86308280 Score: 335
Period size: 96 Copynumber: 2.4 Consensus size: 97
86308038 TAAGATACCA
* * *
86308048 ATGCCATGTCCCAGACATGGTTTTACATTAGCTCTCATATATAGGTGCCGATGCCATGTTCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATA-GTGCCGATGCCATGTCCCAAA
* *
86308113 CATGGTCTTGCACTAGCCCACATGTCGAGGCCG
65 CATGGTCTTACACTAGCCCACATATCGAGGCCG
* * *
86308146 ATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATATCA-A-TGCCGATGTCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-ATAGTGCCGATGCCATGTCCCAAA
*
86308209 CATGGTCTTACACTAGCTCACATATCGAGGCCG
65 CATGGTCTTACACTAGCCCACATATCGAGGCCG
* *
86308242 ATACCATGTCCCAGACATTGTCTTACACTAGCTCTCATA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
86308281 ACCCTAGTAT
Statistics
Matches: 122, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
96 83 0.68
98 38 0.31
99 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (97 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATAGTGCCGATGCCATGTCCCAAAC
ATGGTCTTACACTAGCCCACATATCGAGGCCG
Found at i:86313428 original size:25 final size:25
Alignment explanation
Indices: 86313400--86313447 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86313390 ATAATTAAAC
* * *
86313400 CCTAGGGGTATAACGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
86313425 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
86313448 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:86328486 original size:16 final size:17
Alignment explanation
Indices: 86328457--86328493 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
86328447 CGGTATTTTT
*
86328457 GGGCTTAATGGGCCAAC
1 GGGCTTAATAGGCCAAC
86328474 GGGC-TAATAGGCCAAC
1 GGGCTTAATAGGCCAAC
86328490 GGGC
1 GGGC
86328494 CCACTTTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.24, C:0.24, G:0.38, T:0.14
Consensus pattern (17 bp):
GGGCTTAATAGGCCAAC
Found at i:86334674 original size:23 final size:23
Alignment explanation
Indices: 86334648--86334721 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
86334638 GAGTAAGCAT
86334648 AAATGCTTAGTAAGTTCACATGC
1 AAATGCTTAGTAAGTTCACATGC
* ** * *
86334671 AAATAGC-AAGTAACAT-AAAAGC
1 AAAT-GCTTAGTAAGTTCACATGC
86334693 ATAAATGCTTAGTAAGTTCACATGC
1 --AAATGCTTAGTAAGTTCACATGC
86334718 AAAT
1 AAAT
86334722 AGCAAGTAAC
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 4 0.11
23 16 0.44
24 12 0.33
25 4 0.11
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.26
Consensus pattern (23 bp):
AAATGCTTAGTAAGTTCACATGC
Found at i:86334711 original size:47 final size:47
Alignment explanation
Indices: 86334642--86334735 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
86334632 AGGAGGGAGT
86334642 AAGCATAAATGCTTAGTAAGTTCACATGCAAATAGCAAGTAACATAA
1 AAGCATAAATGCTTAGTAAGTTCACATGCAAATAGCAAGTAACATAA
86334689 AAGCATAAATGCTTAGTAAGTTCACATGCAAATAGCAAGTAACATAA
1 AAGCATAAATGCTTAGTAAGTTCACATGCAAATAGCAAGTAACATAA
86334736 CTATATAAGC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.23
Consensus pattern (47 bp):
AAGCATAAATGCTTAGTAAGTTCACATGCAAATAGCAAGTAACATAA
Found at i:86334729 original size:23 final size:23
Alignment explanation
Indices: 86334656--86334730 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
86334646 ATAAATGCTT
86334656 AGTAAGTTCACATGCAAATAGCA
1 AGTAAGTTCACATGCAAATAGCA
** * * *
86334679 AGTAACAT-AAAAGCATAA-ATGCTT
1 AGTAAGTTCACATGCA-AATA-GC-A
86334703 AGTAAGTTCACATGCAAATAGCA
1 AGTAAGTTCACATGCAAATAGCA
86334726 AGTAA
1 AGTAA
86334731 CATAACTATA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
22 6 0.16
23 15 0.41
24 10 0.27
25 6 0.16
ACGTcount: A:0.47, C:0.15, G:0.16, T:0.23
Consensus pattern (23 bp):
AGTAAGTTCACATGCAAATAGCA
Found at i:86335204 original size:46 final size:46
Alignment explanation
Indices: 86335029--86335204 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
86335019 TGTAACCTGC
** * * *
86335029 CCATAAGCAAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
86335075 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
86335121 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
86335168 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
86335205 TAACCAAACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.62
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:86335223 original size:46 final size:45
Alignment explanation
Indices: 86335080--86335223 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 45
86335070 CGCATCCATA
* *
86335080 AGTGAACTCGGACTCAACTCAACGAGCTCGGAT-GCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATAACC-A---ACATC-CT
* * ** *
86335129 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATAACCAACATCC-T
86335172 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATAACCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATAACC-AACATCCT
86335219 AGTGA
1 AGTGA
86335224 CATGTCACTT
Statistics
Matches: 77, Mismatches: 11, Indels: 17
0.73 0.10 0.16
Matches are distributed among these distances:
42 1 0.01
43 5 0.06
46 36 0.47
47 29 0.38
48 6 0.08
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATAACCAACATCCT
Found at i:86338451 original size:46 final size:46
Alignment explanation
Indices: 86338404--86338575 Score: 292
Period size: 46 Copynumber: 3.7 Consensus size: 46
86338394 TTGAGCATCC
*
86338404 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCT
86338450 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
*
86338496 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
* *
86338542 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86338576 GCGGGTTACA
Statistics
Matches: 122, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
45 2 0.02
46 120 0.98
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
Found at i:86338916 original size:13 final size:13
Alignment explanation
Indices: 86338898--86338924 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86338888 TGAATTTCTA
86338898 AGCATTTATGCTT
1 AGCATTTATGCTT
86338911 AGCATTTATGCTT
1 AGCATTTATGCTT
86338924 A
1 A
86338925 CTCCCTCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (13 bp):
AGCATTTATGCTT
Found at i:86346009 original size:46 final size:49
Alignment explanation
Indices: 86345958--86346096 Score: 184
Period size: 46 Copynumber: 2.9 Consensus size: 49
86345948 ATGGTTGAGC
86345958 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTAG
* * *
86346005 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTA-G
86346050 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
86346097 GCGAGCGAGT
Statistics
Matches: 77, Mismatches: 6, Indels: 14
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.03
43 5 0.06
45 3 0.04
46 29 0.38
47 29 0.38
48 2 0.03
50 4 0.05
51 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (49 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTAG
Found at i:86355646 original size:28 final size:28
Alignment explanation
Indices: 86355583--86355680 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
86355573 ATATTAAGTC
*
86355583 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
86355610 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
86355638 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
86355667 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86355681 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86356143 original size:12 final size:12
Alignment explanation
Indices: 86356126--86356151 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86356116 TGGGCATACT
86356126 TATGTATATATA
1 TATGTATATATA
86356138 TATGTATATATA
1 TATGTATATATA
86356150 TA
1 TA
86356152 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:86364922 original size:23 final size:23
Alignment explanation
Indices: 86364879--86364923 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
86364869 CTAATAACTC
**
86364879 TAATAATTATTAAGTTTTCTTTA
1 TAATAATTATTAAGTCATCTTTA
86364902 TAATAATTATTAAGTCATCTTT
1 TAATAATTATTAAGTCATCTTT
86364924 TAAAAGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (23 bp):
TAATAATTATTAAGTCATCTTTA
Found at i:86371970 original size:40 final size:40
Alignment explanation
Indices: 86371921--86372061 Score: 169
Period size: 40 Copynumber: 3.5 Consensus size: 40
86371911 TCGATGTAAC
86371921 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
86371961 AACCCGCACGAATGCCTTCGGGACTTAACCCGATTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* ** * *
86372001 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGT
1 AACCAGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAAT
* *
86372041 AACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATGCCTTCGG
86372062 ATCTTAGTCC
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
39 5 0.06
40 80 0.91
41 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:86372062 original size:40 final size:40
Alignment explanation
Indices: 86371925--86372077 Score: 159
Period size: 40 Copynumber: 3.8 Consensus size: 40
86371915 TGTAACAACC
* ** * *
86371925 AGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACC
1 AGCACAAATGCCTTCGGGACTTAGTCCGGATATAATAACT
* * * *
86371965 CGCACGAATGCCTTCGGGACTTA-ACCCGATTATAATAACT
1 AGCACAAATGCCTTCGGGACTTAGTCCGGA-TATAATAACT
* *
86372005 AGCACAATTGCCTTC-GGATCTTAGTCCGGATATAGTAACT
1 AGCACAAATGCCTTCGGGA-CTTAGTCCGGATATAATAACT
86372045 AGCACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 AGCACAAATGCCTTCGGGA-CTTAGTCCGGATAT
86372078 CATCTGAATA
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 6 0.06
40 88 0.90
41 4 0.04
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGACTTAGTCCGGATATAATAACT
Found at i:86388702 original size:27 final size:27
Alignment explanation
Indices: 86388666--86388724 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
86388656 TACAATCATA
*
86388666 TATCACATAGGGGCAAAATAGTCATTT
1 TATCACATAGGGGCAAAACAGTCATTT
* *
86388693 TATCATATAGGGGCATAACAGTCATTT
1 TATCACATAGGGGCAAAACAGTCATTT
86388720 TATCA
1 TATCA
86388725 ATTAGATAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (27 bp):
TATCACATAGGGGCAAAACAGTCATTT
Found at i:86389442 original size:18 final size:18
Alignment explanation
Indices: 86389400--86389442 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
86389390 GATTGCTCAT
86389400 ACACATAGCTTGAATCAA
1 ACACATAGCTTGAATCAA
**
86389418 ATGCATAGCTTGAATCAA
1 ACACATAGCTTGAATCAA
86389436 ACACATA
1 ACACATA
86389443 CTAACTTACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.21, G:0.12, T:0.23
Consensus pattern (18 bp):
ACACATAGCTTGAATCAA
Found at i:86391691 original size:42 final size:42
Alignment explanation
Indices: 86391573--86391727 Score: 152
Period size: 42 Copynumber: 3.7 Consensus size: 42
86391563 TACCATACCA
* * * * *
86391573 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATATCCCACATATGGACTTACACGAAATCTCATATTG
* * * *
86391615 ATGCCAATAGCTCAGC-TATGGTA-TTACACAAAATCTAATATTG
1 ATGCC-ATATCCCA-CATATGG-ACTTACACGAAATCTCATATTG
**
86391658 ATGCCATATCCCACATATGGACTTACACGAAATCTCATGCTG
1 ATGCCATATCCCACATATGGACTTACACGAAATCTCATATTG
* *
86391700 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCACATATGGACTTACAC
86391728 ATAAACTTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
41 2 0.02
42 58 0.64
43 31 0.34
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCACATATGGACTTACACGAAATCTCATATTG
Found at i:86391739 original size:85 final size:85
Alignment explanation
Indices: 86391573--86391728 Score: 208
Period size: 85 Copynumber: 1.8 Consensus size: 85
86391563 TACCATACCA
* * * * * *
86391573 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGCCAATAGCTCAGCTATGGTA
1 ATGCCATATCCCACATATGGACTTACACGAAATCTCATATCGATGCCAATAGCCCAGATATGGTA
86391638 TTACACAAAATCTAATATTG
66 TTACACAAAATCTAATATTG
* *
86391658 ATGCCATATCCCACATATGGACTTACACGAAATCTCAT-GCTGATGCC-ATATCCCAGATATGGT
1 ATGCCATATCCCACATATGGACTTACACGAAATCTCATATC-GATGCCAATAGCCCAGATATGGT
*
86391721 CTTACACA
65 ATTACACA
86391729 TAAACTTAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 21 0.34
85 40 0.66
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.29
Consensus pattern (85 bp):
ATGCCATATCCCACATATGGACTTACACGAAATCTCATATCGATGCCAATAGCCCAGATATGGTA
TTACACAAAATCTAATATTG
Found at i:86394602 original size:26 final size:25
Alignment explanation
Indices: 86394560--86394776 Score: 121
Period size: 26 Copynumber: 8.4 Consensus size: 25
86394550 GTACTTAGCA
** * *
86394560 CCTGCTAAATATTCATCCACTCTAAG
1 CCTGCTAAATAAACA-CGACTCAAAG
*
86394586 CCTGCTAAATAAACATCGGCTCAAAG
1 CCTGCTAAATAAACA-CGACTCAAAG
* * * *
86394612 CTTGCTAAACAATCACTGGCTCAAAG
1 CCTGCTAAATAAACAC-GACTCAAAG
* *
86394638 CCTGCTATATAAACACTAGCTCAAAG
1 CCTGCTAAATAAACACGA-CTCAAAG
* * * *
86394664 CCTGCTAAATAATCACTGGCACAAAT
1 CCTGCTAAATAAACAC-GACTCAAAG
** * *
86394690 TTTACTAAATAAACACTGGCAT-AAAG
1 CCTGCTAAATAAACAC-GAC-TCAAAG
* *
86394716 CTTGCTAAATAAACACCGGCTCAAAG
1 CCTGCTAAATAAACA-CGACTCAAAG
* * *
86394742 CCTGCTAACTAATCACTGGCTCAAAG
1 CCTGCTAAATAAACAC-GACTCAAAG
*
86394768 CCTACTAAA
1 CCTGCTAAA
86394777 ATCAAGTACA
Statistics
Matches: 151, Mismatches: 33, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
25 3 0.02
26 147 0.97
27 1 0.01
ACGTcount: A:0.37, C:0.27, G:0.12, T:0.24
Consensus pattern (25 bp):
CCTGCTAAATAAACACGACTCAAAG
Found at i:86394643 original size:52 final size:52
Alignment explanation
Indices: 86394583--86394768 Score: 223
Period size: 52 Copynumber: 3.6 Consensus size: 52
86394573 CATCCACTCT
*
86394583 AAGCCTGCTAAATAAACA-TCGGCTCAAAGCTTGCTAAACAATCACTGGCTCA
1 AAGCCTGCTAAATAAACACT-GGCTCAAAGCTTGCTAAATAATCACTGGCTCA
* * * *
86394635 AAGCCTGCTATATAAACACTAGCTCAAAGCCTGCTAAATAATCACTGGCACA
1 AAGCCTGCTAAATAAACACTGGCTCAAAGCTTGCTAAATAATCACTGGCTCA
*** * * *
86394687 AATTTTACTAAATAAACACTGGCAT-AAAGCTTGCTAAATAAACACCGGCTCA
1 AAGCCTGCTAAATAAACACTGGC-TCAAAGCTTGCTAAATAATCACTGGCTCA
* *
86394739 AAGCCTGCTAACTAATCACTGGCTCAAAGC
1 AAGCCTGCTAAATAAACACTGGCTCAAAGC
86394769 CTACTAAAAT
Statistics
Matches: 110, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
51 1 0.01
52 107 0.97
53 2 0.02
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.22
Consensus pattern (52 bp):
AAGCCTGCTAAATAAACACTGGCTCAAAGCTTGCTAAATAATCACTGGCTCA
Found at i:86394698 original size:78 final size:78
Alignment explanation
Indices: 86394560--86394776 Score: 242
Period size: 78 Copynumber: 2.8 Consensus size: 78
86394550 GTACTTAGCA
** * * *
86394560 CCTGCTAAATATTCATCCA-CTCTAAGCCTGCTAAATAAACA-TCGGCTCAAAGCTTGCTAAACA
1 CCTGCTAAATAAACA-CCAGCTCAAAGCCTGCTAAATAATCACT-GGCTCAAAGCTTACTAAACA
*
86394623 ATCACTGGC-TCAAAG
64 AACACTGGCAT-AAAG
* * * ** *
86394638 CCTGCTATATAAACACTAGCTCAAAGCCTGCTAAATAATCACTGGCACAAATTTTACTAAATAAA
1 CCTGCTAAATAAACACCAGCTCAAAGCCTGCTAAATAATCACTGGCTCAAAGCTTACTAAACAAA
86394703 CACTGGCATAAAG
66 CACTGGCATAAAG
* * * *
86394716 CTTGCTAAATAAACACCGGCTCAAAGCCTGCTAACTAATCACTGGCTCAAAGCCTACTAAA
1 CCTGCTAAATAAACACCAGCTCAAAGCCTGCTAAATAATCACTGGCTCAAAGCTTACTAAA
86394777 ATCAAGTACA
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
77 2 0.02
78 111 0.97
79 2 0.02
ACGTcount: A:0.37, C:0.27, G:0.12, T:0.24
Consensus pattern (78 bp):
CCTGCTAAATAAACACCAGCTCAAAGCCTGCTAAATAATCACTGGCTCAAAGCTTACTAAACAAA
CACTGGCATAAAG
Found at i:86405904 original size:15 final size:15
Alignment explanation
Indices: 86405884--86405916 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
86405874 ATAACTAGTA
86405884 TATAAT-TATATTTAT
1 TATAATGTATA-TTAT
86405899 TATAATGTATATTAT
1 TATAATGTATATTAT
86405914 TAT
1 TAT
86405917 CAACTTTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
TATAATGTATATTAT
Found at i:86409695 original size:39 final size:39
Alignment explanation
Indices: 86409605--86409861 Score: 363
Period size: 39 Copynumber: 6.5 Consensus size: 39
86409595 ACAAAGCATG
* * * *
86409605 CGGGACTTTAAGCCCGAATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
86409645 CGGGACTTTAGCCCGGATTTAACACCACCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
86409685 CGGGGCTTAGCCTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
86409724 CGGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
86409763 TGGGGCTTAGCCCGGATATAACACTAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
86409802 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
86409841 CGGGACTTAGCCCGAATATAA
1 CGGGACTTAGCCCGGATATAA
86409862 TTCTCCATTA
Statistics
Matches: 195, Mismatches: 21, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
39 175 0.90
40 20 0.10
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:86413665 original size:16 final size:17
Alignment explanation
Indices: 86413633--86413670 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
86413623 CAGTTTTATT
*
86413633 TTTTTCTTCTTTCTTAC
1 TTTTTCTTCTCTCTTAC
86413650 TTTTTCTTCTCT-TTAC
1 TTTTTCTTCTCTCTTAC
86413666 TTTTT
1 TTTTT
86413671 TTTGGGGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCTTCTCTCTTAC
Found at i:86413671 original size:17 final size:17
Alignment explanation
Indices: 86413627--86413671 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
86413617 TCATATCAGT
* *
86413627 TTTATTTTTTTCTTCTT
1 TTTACTTTTTTCTTCTC
86413644 TCTTAC-TTTTTCTTCTC
1 T-TTACTTTTTTCTTCTC
86413661 TTTACTTTTTT
1 TTTACTTTTTT
86413672 TTGGGGATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 4 0.17
17 17 0.71
18 3 0.12
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTACTTTTTTCTTCTC
Found at i:86421118 original size:5 final size:5
Alignment explanation
Indices: 86421108--86421132 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
86421098 ACACCTATTA
86421108 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
86421133 CCCTATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:86429314 original size:37 final size:37
Alignment explanation
Indices: 86429255--86429400 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
86429245 AGCTCAGACG
* * *
86429255 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
86429292 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86429329 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86429366 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
86429401 ATATATTTCC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:86429673 original size:47 final size:47
Alignment explanation
Indices: 86429614--86429994 Score: 573
Period size: 47 Copynumber: 8.0 Consensus size: 47
86429604 TTTCGAATTA
* * **
86429614 GCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
* * * *
86429661 GCCATTCAGCCTTATCTCATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
*
86429708 GCCATTCGGCCTTATCACACATACGTATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
*
86429755 GCCATTTGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
86429802 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
* * ***
86429849 GCCATTGGGCCTTATCACGCATATATATATACAGATTCACATTCATCACATTG
1 GCCATTCGGCCTTATCA--CACATACGCAT---G-TTCACATTCATCACATTG
86429902 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
86429949 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
86429995 AAAATCCTAA
Statistics
Matches: 306, Mismatches: 22, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
47 256 0.84
48 1 0.00
49 7 0.02
51 7 0.02
52 1 0.00
53 34 0.11
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
Found at i:86429845 original size:25 final size:25
Alignment explanation
Indices: 86429721--86429798 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 25
86429711 ATTCGGCCTT
*
86429721 ATCACACATACGTATGTTCACATTC
1 ATCACACATACGCATGTTCACATTC
** ** *
86429746 AT--CACATTGGCCAT-TTGGCCTT-
1 ATCACACATACG-CATGTTCACATTC
86429768 ATCACACATACGCATGTTCACATTC
1 ATCACACATACGCATGTTCACATTC
86429793 ATCACA
1 ATCACA
86429799 TTGGCCATTC
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 2 0.05
23 14 0.38
24 13 0.35
25 8 0.22
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATACGCATGTTCACATTC
Found at i:86429926 original size:100 final size:100
Alignment explanation
Indices: 86429784--86429971 Score: 358
Period size: 100 Copynumber: 1.9 Consensus size: 100
86429774 CATACGCATG
86429784 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
* *
86429849 GCCATTGGGCCTTATCACGCATATATATATACAGA
66 GCCATTCGGCCTTATCACACATATATATATACAGA
86429884 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
86429949 GCCATTCGGCCTTATCACACATA
66 GCCATTCGGCCTTATCACACATA
86429972 CGCATGTTCA
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 86 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (100 bp):
TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
GCCATTCGGCCTTATCACACATATATATATACAGA
Found at i:86429934 original size:194 final size:188
Alignment explanation
Indices: 86429614--86429994 Score: 609
Period size: 194 Copynumber: 2.0 Consensus size: 188
86429604 TTTCGAATTA
* ** *
86429614 GCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCTC
1 GCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCGC
* *
86429679 ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGTATGTTCACAT
66 ATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
*
86429744 TCATCACATTGGCCATTTGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
131 TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
* **
86429802 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTGGGCCTTATCAC
1 GCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCCTTAT--C
*
86429867 GCATATATATATACAGATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
64 GCATATATACAT---G-TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
86429932 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
125 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
86429995 AAAATCCTAA
Statistics
Matches: 176, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
188 56 0.32
190 10 0.06
193 1 0.01
194 109 0.62
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (188 bp):
GCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCGC
ATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
Found at i:86432324 original size:85 final size:85
Alignment explanation
Indices: 86432181--86432359 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
86432171 TATTTTATTG
*
86432181 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
86432246 TAGCCATAACATCTTGTCTA
66 TAGCCATAACATCTTGTCCA
86432266 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
86432331 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
86432351 CCCATGCTC
1 CCCATGCTC
86432360 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:86435268 original size:42 final size:42
Alignment explanation
Indices: 86435207--86435350 Score: 172
Period size: 41 Copynumber: 3.5 Consensus size: 42
86435197 TGTACAGTGA
*
86435207 TATATCAGGCTTATTGCCTAGCAGGATTTGATGCCGGTGTAT
1 TATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTAT
*
86435249 GT-TATCAAGCTTATTGCCTAGCAGGCTTT-ATGCCGGTGTAT
1 -TATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTAT
* * * *
86435290 TAAATCAGGTTTATTACCTAGCAGGCTCTG-TGCCGGTGTAT
1 TATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTAT
86435331 TATA-CTAGGCTT-TATGCCTA
1 TATATC-AGGCTTAT-TGCCTA
86435351 ACAAATTTTA
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
40 3 0.03
41 58 0.67
42 25 0.29
43 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.36
Consensus pattern (42 bp):
TATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTAT
Found at i:86435956 original size:37 final size:37
Alignment explanation
Indices: 86435915--86435998 Score: 141
Period size: 37 Copynumber: 2.3 Consensus size: 37
86435905 TTATGGCATA
* *
86435915 TATAGACTAATATGTATTTTGTCCTATCTTGGATATG
1 TATAGGCTAATATGTATTTTGTCCGATCTTGGATATG
*
86435952 TATAGGCTAATATGTATTTTTTCCGATCTTGGATATG
1 TATAGGCTAATATGTATTTTGTCCGATCTTGGATATG
86435989 TATAGGCTAA
1 TATAGGCTAA
86435999 CTTATGTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.44
Consensus pattern (37 bp):
TATAGGCTAATATGTATTTTGTCCGATCTTGGATATG
Found at i:86438474 original size:11 final size:11
Alignment explanation
Indices: 86438458--86438490 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
86438448 GTGCATTGGA
86438458 ATTTTTATTTT
1 ATTTTTATTTT
86438469 ATTTTTATTTT
1 ATTTTTATTTT
*
86438480 -TATTTATTTT
1 ATTTTTATTTT
86438490 A
1 A
86438491 CTTAGTTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:86438480 original size:17 final size:16
Alignment explanation
Indices: 86438458--86438489 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
86438448 GTGCATTGGA
86438458 ATTTTTATTTTATTTTT
1 ATTTTTA-TTTATTTTT
86438475 ATTTTTATTTATTTT
1 ATTTTTATTTATTTT
86438490 ACTTAGTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
ATTTTTATTTATTTTT
Found at i:86439349 original size:20 final size:20
Alignment explanation
Indices: 86439324--86439370 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
86439314 GGTCACACGG
86439324 CCAAGCCACACGCCCATGTA
1 CCAAGCCACACGCCCATGTA
** **
86439344 CCAAGCCGTACGCTTATGTA
1 CCAAGCCACACGCCCATGTA
86439364 CCAAGCC
1 CCAAGCC
86439371 GTGTACCCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.40, G:0.17, T:0.15
Consensus pattern (20 bp):
CCAAGCCACACGCCCATGTA
Found at i:86439987 original size:22 final size:22
Alignment explanation
Indices: 86439962--86440006 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
86439952 CTTCAATCAT
*
86439962 TCAAGCATTATAAG-CCAAGATA
1 TCAACCATTATAAGACCAA-ATA
*
86439984 TCAACCATTTTAAGACCAAATA
1 TCAACCATTATAAGACCAAATA
86440006 T
1 T
86440007 ATACATGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (22 bp):
TCAACCATTATAAGACCAAATA
Found at i:86443743 original size:43 final size:44
Alignment explanation
Indices: 86443676--86443803 Score: 190
Period size: 43 Copynumber: 3.0 Consensus size: 44
86443666 ATATAGCTTG
* * *
86443676 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATA
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATA
*
86443719 T-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATA
*
86443761 TACAATGCCAATGTCTCAGACATGGTCTTACATGTAATCACAT
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
86443804 CTCGGTAATC
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
42 9 0.12
43 67 0.88
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (44 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATA
Found at i:86451915 original size:20 final size:19
Alignment explanation
Indices: 86451887--86451983 Score: 74
Period size: 20 Copynumber: 4.8 Consensus size: 19
86451877 GAATTTTATT
*
86451887 AATATAATAAAATAATTTAA
1 AATAAAATAAAATAA-TTAA
*
86451907 AATAAAATAAAATAA--GA
1 AATAAAATAAAATAATTAA
86451924 AATAAAATAATAATAATAATAA
1 AATAAAATAA-AATAAT--TAA
86451946 TAATAATAATAAAATAA-TAA
1 -AATAA-AATAAAATAATTAA
86451966 TAATAATAATAGAAATAA
1 -AATAA-AATA-AAATAA
86451984 AATTTAAAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
17 11 0.17
18 5 0.08
20 28 0.42
21 6 0.09
22 1 0.02
23 10 0.15
24 5 0.08
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (19 bp):
AATAAAATAAAATAATTAA
Found at i:86451937 original size:3 final size:3
Alignment explanation
Indices: 86451886--86451976 Score: 99
Period size: 3 Copynumber: 32.7 Consensus size: 3
86451876 AGAATTTTAT
* *
86451886 TAA T-A TAA TAA -AA TAA T-T TAA -AA TAA -AA TAA -AA TAA GAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
86451926 TAA -AA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
86451972 TAA TA
1 TAA TA
86451977 GAAATAAAAT
Statistics
Matches: 75, Mismatches: 4, Indels: 18
0.77 0.04 0.19
Matches are distributed among these distances:
2 15 0.20
3 58 0.77
4 2 0.03
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:86452283 original size:28 final size:28
Alignment explanation
Indices: 86452243--86452299 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
86452233 AAGCTTACCT
86452243 GGGAATAGCTTTAATACGGAGTTATAAA
1 GGGAATAGCTTTAATACGGAGTTATAAA
86452271 GGGAATAGCTTTAATACGGAGTTATAAA
1 GGGAATAGCTTTAATACGGAGTTATAAA
86452299 G
1 G
86452300 TAAAAATCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.07, G:0.26, T:0.28
Consensus pattern (28 bp):
GGGAATAGCTTTAATACGGAGTTATAAA
Found at i:86452310 original size:28 final size:28
Alignment explanation
Indices: 86452249--86452310 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
86452239 ACCTGGGAAT
* *
86452249 AGCTTTAATACGGAGTTATAAAGGGAAT
1 AGCTTTAATACGGAGTTATAAAGGAAAA
*
86452277 AGCTTTAATACGGAGTTATAAAGTAAAA
1 AGCTTTAATACGGAGTTATAAAGGAAAA
*
86452305 ATCTTT
1 AGCTTT
86452311 GTCCTACCGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.32
Consensus pattern (28 bp):
AGCTTTAATACGGAGTTATAAAGGAAAA
Found at i:86458384 original size:10 final size:10
Alignment explanation
Indices: 86458369--86458395 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
86458359 AAATACATTC
86458369 AATTAAAGAT
1 AATTAAAGAT
86458379 AATTAAAGAT
1 AATTAAAGAT
86458389 AATTAAA
1 AATTAAA
86458396 ATTAAATCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (10 bp):
AATTAAAGAT
Found at i:86458444 original size:15 final size:15
Alignment explanation
Indices: 86458424--86458453 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86458414 ATAATCCTAA
*
86458424 TAATTATCTTAATAT
1 TAATTATCCTAATAT
86458439 TAATTATCCTAATAT
1 TAATTATCCTAATAT
86458454 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:86459083 original size:140 final size:140
Alignment explanation
Indices: 86458829--86459088 Score: 312
Period size: 140 Copynumber: 1.9 Consensus size: 140
86458819 CATGGCAACC
* * * *
86458829 ACATTTTATGATTGTTAGAATAAATATTTGACGATGACATAAAATCATTGTGCAAATGTTATACA
1 ACATTTCATGATAGTTAGAATAAATATTTGACAATGACATAAAATCATTGTGCAAATGTAATACA
* * * * * *
86458894 TATCCGATTAAAATATCTTTGCAAAATAATATTTGCAATCAATGGTATTATTGTTATATAAATGA
66 CAACCAATTAAAATATCTTTACAAAATAATATTTGCAACCAATAGTATTATTGTTATATAAATGA
86458959 TTCGGTAACT
131 TTCGGTAACT
* * **
86458969 ACATTTCATGATAGTTCA-AATAAATTTTTGACAATGGCATATTATCGA-TGTGC-AATGTAATA
1 ACATTTCATGATAGTT-AGAATAAATATTTGACAATGACATAAAATC-ATTGTGCAAATGTAATA
* *
86459031 CACAACCAATTAAAATA-CTATTACAAAATGATATTTGGCAACCAATATTATTATTGTT
64 CACAACCAATTAAAATATCT-TTACAAAATAATATTT-GCAACCAATAGTATTATTGTT
86459089 GCATAAAAGA
Statistics
Matches: 100, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
138 2 0.02
139 36 0.36
140 60 0.60
141 2 0.02
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (140 bp):
ACATTTCATGATAGTTAGAATAAATATTTGACAATGACATAAAATCATTGTGCAAATGTAATACA
CAACCAATTAAAATATCTTTACAAAATAATATTTGCAACCAATAGTATTATTGTTATATAAATGA
TTCGGTAACT
Found at i:86463472 original size:3 final size:3
Alignment explanation
Indices: 86463464--86463492 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
86463454 ACCTAAGGCA
86463464 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
86463493 ATGGCATTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:86464894 original size:12 final size:13
Alignment explanation
Indices: 86464875--86464904 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
86464865 TTACATATTT
*
86464875 TTATTTTTTAAAA
1 TTATTTTTAAAAA
86464888 TTATTTTTAAAAA
1 TTATTTTTAAAAA
86464901 TTAT
1 TTAT
86464905 AACCAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTATTTTTAAAAA
Found at i:86465467 original size:3 final size:3
Alignment explanation
Indices: 86465459--86465495 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
86465449 AGCTTAGATG
86465459 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
86465496 ATACTTCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:86466603 original size:117 final size:116
Alignment explanation
Indices: 86466455--86466687 Score: 369
Period size: 117 Copynumber: 2.0 Consensus size: 116
86466445 TATATACTAC
* * *
86466455 TATAATGTAAACATTAAAAATGTTAAAGATGACTAAATATAATTTTTTTATAAATAAAAATATAA
1 TATAATGTAAACATTAAAAATGTTAAAGATGACTAAATAAAACTTTTTTATAAATAAAAAAAT-A
86466520 AAATAGTTAGATATTAAATTAAAATTAATATAAATATTTTAAAAATAATATG
65 AAATAGTTAGATATTAAATTAAAATTAATATAAATATTTTAAAAATAATATG
86466572 TATAATGTAAACATTAAAAAATGTT-AAGATGACTAAATAAAACTTTTTTATAAATAAAAAAATA
1 TATAATGTAAACATT-AAAAATGTTAAAGATGACTAAATAAAACTTTTTTATAAATAAAAAAATA
* * * * *
86466636 AAATATTTAGATTTTAATTTAAAATTAATATATATATTTTTAAAATAATATG
65 AAATAGTTAGATATTAAATTAAAATTAATATAAATATTTTAAAAATAATATG
86466688 GGTAGACCTA
Statistics
Matches: 107, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
116 48 0.45
117 50 0.47
118 9 0.08
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.39
Consensus pattern (116 bp):
TATAATGTAAACATTAAAAATGTTAAAGATGACTAAATAAAACTTTTTTATAAATAAAAAAATAA
AATAGTTAGATATTAAATTAAAATTAATATAAATATTTTAAAAATAATATG
Found at i:86470074 original size:28 final size:28
Alignment explanation
Indices: 86470043--86470099 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
86470033 CATTTTTCCT
86470043 TCCTAAA-TTCTCAACTTCCAATCCTCAA
1 TCCTAAATTTC-CAACTTCCAATCCTCAA
* * *
86470071 TCCTCAATTTCCAATTTTCAATCCTCAA
1 TCCTAAATTTCCAACTTCCAATCCTCAA
86470099 T
1 T
86470100 TATTTTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 22 0.88
29 3 0.12
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (28 bp):
TCCTAAATTTCCAACTTCCAATCCTCAA
Found at i:86470091 original size:21 final size:21
Alignment explanation
Indices: 86470043--86470100 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
86470033 CATTTTTCCT
* * *
86470043 TCCTAAATTCTCAACTTCCAA
1 TCCTCAATCCTCAATTTCCAA
86470064 TCCTCAATCCTCAATTTCCAA
1 TCCTCAATCCTCAATTTCCAA
**
86470085 TTTTCAATCCTCAATT
1 TCCTCAATCCTCAATT
86470101 ATTTTTTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.38
Consensus pattern (21 bp):
TCCTCAATCCTCAATTTCCAA
Found at i:86471982 original size:13 final size:13
Alignment explanation
Indices: 86471964--86471989 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86471954 ATTCAGCACC
86471964 AGTTTATTTTACA
1 AGTTTATTTTACA
86471977 AGTTTATTTTACA
1 AGTTTATTTTACA
86471990 CAAGCACCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (13 bp):
AGTTTATTTTACA
Found at i:86474952 original size:14 final size:14
Alignment explanation
Indices: 86474933--86474961 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86474923 TATTGGGAAT
86474933 TTATATTAATTTAA
1 TTATATTAATTTAA
86474947 TTATATTAATTTAA
1 TTATATTAATTTAA
86474961 T
1 T
86474962 ATTAAAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATATTAATTTAA
Found at i:86475818 original size:15 final size:15
Alignment explanation
Indices: 86475798--86475827 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86475788 CATTTTATTT
86475798 ATATTAGGATAATTA
1 ATATTAGGATAATTA
*
86475813 ATATTATGATAATTA
1 ATATTAGGATAATTA
86475828 TTAAGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (15 bp):
ATATTAGGATAATTA
Found at i:86476631 original size:18 final size:18
Alignment explanation
Indices: 86476608--86476649 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
86476598 TCTCCATCTC
*
86476608 AATTTCCGTCATTT-ATTT
1 AATTT-CGTAATTTAATTT
86476626 AATTTCGTAATTTCAATTT
1 AATTTCGTAATTT-AATTT
86476645 AATTT
1 AATTT
86476650 AAATACTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 7 0.33
18 5 0.24
19 9 0.43
ACGTcount: A:0.29, C:0.12, G:0.05, T:0.55
Consensus pattern (18 bp):
AATTTCGTAATTTAATTT
Found at i:86477531 original size:35 final size:35
Alignment explanation
Indices: 86477485--86477557 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
86477475 ATTCTTGTGA
*
86477485 ATGAATGAATGTGAATGTTATAAAATTTCCATAGC
1 ATGAATGAATGTGAATGTTATAAAATTGCCATAGC
86477520 ATGAATGAATGTGAATGTTATAAAATTGCCATAGC
1 ATGAATGAATGTGAATGTTATAAAATTGCCATAGC
86477555 ATG
1 ATG
86477558 TCATGTATTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (35 bp):
ATGAATGAATGTGAATGTTATAAAATTGCCATAGC
Found at i:86479404 original size:15 final size:17
Alignment explanation
Indices: 86479373--86479406 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
86479363 ATTATGTGGA
86479373 TATTATTATATCGAGTT
1 TATTATTATATCGAGTT
86479390 TATT-TTATA-CGAGTT
1 TATTATTATATCGAGTT
86479405 TA
1 TA
86479407 CTAAGCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 5 0.29
17 4 0.24
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53
Consensus pattern (17 bp):
TATTATTATATCGAGTT
Found at i:86489538 original size:25 final size:25
Alignment explanation
Indices: 86489522--86489615 Score: 64
Period size: 25 Copynumber: 4.0 Consensus size: 25
86489512 AATAGTATTT
86489522 TATTAAT-TTAATATTAAAGTGATTA
1 TATTAATATTAA-ATTAAAGTGATTA
*
86489547 TCTTAATATTAAATTAAA-T--TTA
1 TATTAATATTAAATTAAAGTGATTA
*
86489569 -A-T-AT-TTAACTTCATAAGT-ATTA
1 TATTAATATTAAATT-A-AAGTGATTA
86489591 TATTAAT-TTAATATTAAAGTGATTA
1 TATTAATATTAA-ATTAAAGTGATTA
86489616 AGTTTAATCA
Statistics
Matches: 55, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
18 6 0.11
19 3 0.05
20 3 0.05
21 1 0.02
22 6 0.11
23 1 0.02
24 6 0.11
25 23 0.42
26 6 0.11
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (25 bp):
TATTAATATTAAATTAAAGTGATTA
Found at i:86489568 original size:68 final size:69
Alignment explanation
Indices: 86489481--86489615 Score: 209
Period size: 69 Copynumber: 2.0 Consensus size: 69
86489471 TTTAATAGAT
* * * *
86489481 TTAATATTAAATTTAATTTAGTACTTATCTTAAT-AGTATTTTATTAATTTAATATTAAAGTGAT
1 TTAATATTAAATTAAATTTAATACTTAACTTAATAAGTATTATATTAATTTAATATTAAAGTGAT
86489545 TATC
66 TATC
* *
86489549 TTAATATTAAATTAAATTTAATATTTAACTTCATAAGTATTATATTAATTTAATATTAAAGTGAT
1 TTAATATTAAATTAAATTTAATACTTAACTTAATAAGTATTATATTAATTTAATATTAAAGTGAT
86489614 TA
66 TA
86489616 AGTTTAATCA
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
68 29 0.48
69 31 0.52
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (69 bp):
TTAATATTAAATTAAATTTAATACTTAACTTAATAAGTATTATATTAATTTAATATTAAAGTGAT
TATC
Found at i:86489618 original size:32 final size:32
Alignment explanation
Indices: 86489515--86489618 Score: 93
Period size: 32 Copynumber: 3.1 Consensus size: 32
86489505 TTATCTTAAT
*
86489515 AGTATTTTATTAATTTAATATTAAAGTGATTA
1 AGTATTATATTAATTTAATATTAAAGTGATTA
* * ** *
86489547 TCTTAATATTAAATTAAATTTAATATTTAACTTCA-TA
1 ----AGTATTATATT-AATTTAATA-TTAAAGTGATTA
86489584 AGTATTATATTAATTTAATATTAAAGTGATTA
1 AGTATTATATTAATTTAATATTAAAGTGATTA
86489616 AGT
1 AGT
86489619 TTAATCATAG
Statistics
Matches: 54, Mismatches: 11, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
31 6 0.11
32 14 0.26
33 9 0.17
36 8 0.15
37 11 0.20
38 6 0.11
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.48
Consensus pattern (32 bp):
AGTATTATATTAATTTAATATTAAAGTGATTA
Found at i:86491037 original size:26 final size:26
Alignment explanation
Indices: 86491008--86491089 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
86490998 TGATACAAAT
86491008 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86491034 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86491060 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86491086 TGAT
1 TGAT
86491090 GGGAATTTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Done.