Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 262 of 343
Found at i:86498509 original size:47 final size:45
Alignment explanation
Indices: 86498448--86498614 Score: 160
Period size: 47 Copynumber: 3.6 Consensus size: 45
86498438 TATGAGAGCC
86498448 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCTAGACTAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCTAGACTAGGGCT
* * *
86498496 AGTGTAAGACATGTTTGGGACATGCATCGGC-CTCGAC-AGAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCTAGACTAG-G---GCT
* * * * * *
86498543 AGTGTAAGACGTGTCTGGGATATGCATCGGCT-AAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCTAGACTAGGGCT
*
86498587 AGTGTAAGACATGTCTAGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
86498615 AGCACGCATA
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 2 0.02
44 33 0.34
46 8 0.08
47 45 0.46
48 10 0.10
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCTAGACTAGGGCT
Found at i:86498608 original size:91 final size:95
Alignment explanation
Indices: 86498444--86498614 Score: 242
Period size: 91 Copynumber: 1.8 Consensus size: 95
86498434 ATATTATGAG
*
86498444 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCTAGACTAGGGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAGACTAGGGCTAGTGTAAGACATG
* *
86498509 TTTGGGACATGCATCGGCCTCGACAGAGAT
66 TCTAGGACATGCATCGGCCTCGACAGAGAT
* * * * *
86498539 AGCCAGTGTAAGA-CGTGTCTGGGATAT-GCATCGGC-T-AAGAGTTGTGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAGACTAGGGCTAGTGTAAGACATG
86498600 TCTAGGACATGCATC
66 TCTAGGACATGCATC
86498615 AGCACGCATA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
91 34 0.50
92 1 0.01
93 8 0.12
94 12 0.18
95 13 0.19
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (95 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAGACTAGGGCTAGTGTAAGACATG
TCTAGGACATGCATCGGCCTCGACAGAGAT
Found at i:86515546 original size:6 final size:6
Alignment explanation
Indices: 86515537--86515586 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
86515527 GATGATGATG
** * *
86515537 TTTAAT TTT-AT TTTAAT TTTAAT TTT-AT TTTCTT TTTTAT TTTTAT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT
86515583 TTTA
1 TTTA
86515587 TGTTTTTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 10 0.26
6 28 0.74
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTAAT
Found at i:86515559 original size:17 final size:17
Alignment explanation
Indices: 86515537--86515586 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
86515527 GATGATGATG
86515537 TTTAATTTTATTTTAAT
1 TTTAATTTTATTTTAAT
**
86515554 TTTAATTTTATTTTCTTT
1 TTTAATTTTATTTT-AAT
*
86515572 TTTATTTTTATTTTA
1 TTTAATTTTATTTTA
86515587 TGTTTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTAATTTTATTTTAAT
Found at i:86515573 original size:23 final size:23
Alignment explanation
Indices: 86515542--86515601 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
86515532 TGATGTTTAA
86515542 TTTTATTTTAATTTTAATTTTAT-
1 TTTT-TTTTAATTTTAATTTTATG
* *
86515565 TTTCTTTTTTATTTTTATTTTATG
1 TTT-TTTTTAATTTTAATTTTATG
*
86515589 TTTTTATTAATTT
1 TTTTTTTTAATTT
86515602 CACCTTTAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
23 27 0.87
24 4 0.13
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTTTTTTAATTTTAATTTTATG
Found at i:86515580 original size:18 final size:19
Alignment explanation
Indices: 86515553--86515596 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
86515543 TTTATTTTAA
* *
86515553 TTTTAATTTTATTTTCT-T
1 TTTTATTTTTATTTTATGT
86515571 TTTTATTTTTATTTTATGT
1 TTTTATTTTTATTTTATGT
86515590 TTTTATT
1 TTTTATT
86515597 AATTTCACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (19 bp):
TTTTATTTTTATTTTATGT
Found at i:86515592 original size:12 final size:11
Alignment explanation
Indices: 86515537--86515592 Score: 58
Period size: 12 Copynumber: 4.8 Consensus size: 11
86515527 GATGATGATG
*
86515537 TTTAATTTTAT
1 TTTATTTTTAT
*
86515548 TTTAATTTTAAT
1 TTT-ATTTTTAT
*
86515560 TTTATTTTCTTT
1 TTTATTTT-TAT
86515572 TTTATTTTTAT
1 TTTATTTTTAT
86515583 TTTATGTTTT
1 TTTAT-TTTT
86515593 TATTAATTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
11 15 0.41
12 22 0.59
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:86523288 original size:30 final size:32
Alignment explanation
Indices: 86523232--86523295 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 32
86523222 TAGTAATTAT
86523232 AAAATTGTACTTTAATTCTCTTAAAAATAATA
1 AAAATTGTACTTTAATTCTCTTAAAAATAATA
* * *
86523264 AAAATTTTA-TTTAA-TCTTTTAAAAATTATA
1 AAAATTGTACTTTAATTCTCTTAAAAATAATA
86523294 AA
1 AA
86523296 GAAATAGTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 16 0.55
31 5 0.17
32 8 0.28
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (32 bp):
AAAATTGTACTTTAATTCTCTTAAAAATAATA
Found at i:86529392 original size:24 final size:22
Alignment explanation
Indices: 86529365--86529417 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 22
86529355 AAAATTTAAA
86529365 AATTAAATAAAATATTAAAACCCT
1 AATTAAATAAAAT-TT-AAACCCT
*
86529389 AATTTAATAAAATTTAAACCCT
1 AATTAAATAAAATTTAAACCCT
86529411 AATTAAA
1 AATTAAA
86529418 CAATTAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 13 0.48
23 2 0.07
24 12 0.44
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (22 bp):
AATTAAATAAAATTTAAACCCT
Found at i:86529424 original size:42 final size:42
Alignment explanation
Indices: 86529337--86529432 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
86529327 TCCTAAAACC
* *
86529337 TTAAAACACTAATTAATAAAAATTTAAAAATTAAATAAAATA
1 TTAAAACCCTAATTAATAAAAATTTAAAAACTAAATAAAATA
** *
86529379 TTAAAACCCTAATTTAAT-AAAATTTAAACCCTAATTAAACA-A
1 TTAAAACCCTAA-TTAATAAAAATTTAAAAACTAAATAAA-ATA
86529421 TTAAAACCCTAA
1 TTAAAACCCTAA
86529433 AAAAATACAG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 41 0.87
43 6 0.13
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.30
Consensus pattern (42 bp):
TTAAAACCCTAATTAATAAAAATTTAAAAACTAAATAAAATA
Found at i:86529497 original size:28 final size:29
Alignment explanation
Indices: 86529466--86529525 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
86529456 CTAGATGCGC
*
86529466 TTTT-TTTAGTGCGCTGACCTGGACGCGT
1 TTTTCTTTAGCGCGCTGACCTGGACGCGT
* * *
86529494 TTTTCTTTAGCGTGCTGACTTGGATGCGT
1 TTTTCTTTAGCGCGCTGACCTGGACGCGT
86529523 TTT
1 TTT
86529526 ACTGGTCATG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 4 0.15
29 23 0.85
ACGTcount: A:0.10, C:0.18, G:0.27, T:0.45
Consensus pattern (29 bp):
TTTTCTTTAGCGCGCTGACCTGGACGCGT
Found at i:86532583 original size:15 final size:17
Alignment explanation
Indices: 86532545--86532584 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
86532535 CCATTATATG
86532545 TGATTAAATGATAAGTTA
1 TGATT-AATGATAAGTTA
86532563 TG-TTAATGA-AAG-TA
1 TGATTAATGATAAGTTA
86532577 TGATTAAT
1 TGATTAAT
86532585 TTAATTAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.19
15 8 0.38
16 5 0.24
17 2 0.10
18 2 0.10
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.40
Consensus pattern (17 bp):
TGATTAATGATAAGTTA
Found at i:86533755 original size:30 final size:30
Alignment explanation
Indices: 86533702--86533777 Score: 100
Period size: 30 Copynumber: 2.6 Consensus size: 30
86533692 AGATGGGTAA
* *
86533702 CCTAATATAA-GTAAGCTTCTGTGAGCAAC
1 CCTAATATAATGTCAGCTTCTGTGAGAAAC
* * *
86533731 CTTGATATAATGTCAGCTTGTGTGAGAAAC
1 CCTAATATAATGTCAGCTTCTGTGAGAAAC
86533761 CCTAATATAATGTCAGC
1 CCTAATATAATGTCAGC
86533778 CTGCATGAGC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 8 0.21
30 31 0.79
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (30 bp):
CCTAATATAATGTCAGCTTCTGTGAGAAAC
Found at i:86540642 original size:15 final size:16
Alignment explanation
Indices: 86540618--86540647 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
86540608 AAACTTCATA
86540618 AAAAGAAAAAAGAAGC
1 AAAAGAAAAAAGAAGC
86540634 AAAAG-AAAAAGAAG
1 AAAAGAAAAAAGAAG
86540648 AACGTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.77, C:0.03, G:0.20, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAGAAGC
Found at i:86541876 original size:20 final size:21
Alignment explanation
Indices: 86541837--86541876 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
86541827 ATAACACAGC
86541837 TCTGAAGCATATCTTCCAAAA
1 TCTGAAGCATATCTTCCAAAA
* *
86541858 TCTGAATCAT-TCTTTCAAA
1 TCTGAAGCATATCTTCCAAA
86541877 CTGACCATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.35
Consensus pattern (21 bp):
TCTGAAGCATATCTTCCAAAA
Found at i:86544983 original size:13 final size:13
Alignment explanation
Indices: 86544965--86544993 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
86544955 GGTTGTTTCT
86544965 TAAACTAATTAAC
1 TAAACTAATTAAC
86544978 TAAACTAATTAAC
1 TAAACTAATTAAC
86544991 TAA
1 TAA
86544994 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:86557087 original size:27 final size:26
Alignment explanation
Indices: 86557051--86557101 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
86557041 TCATATCAGA
*
86557051 ATTTTCATATTTTCAAAACGTATATC
1 ATTTTCATATTTTCAAAACATATATC
*
86557077 ATTTATCATATTTTCAGAACATATA
1 ATTT-TCATATTTTCAAAACATATA
86557102 ACATATTAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.37, C:0.14, G:0.04, T:0.45
Consensus pattern (26 bp):
ATTTTCATATTTTCAAAACATATATC
Found at i:86560570 original size:57 final size:57
Alignment explanation
Indices: 86560495--86560608 Score: 201
Period size: 57 Copynumber: 2.0 Consensus size: 57
86560485 AATATATGTT
* *
86560495 GTACTCTTTTTCCCTTAACCGAGGTTTTGTTCGCTAGGTTTCTTAGTAAGATTTTTA
1 GTACACTTTTTCCCTTAACCGAGGTTTTGTCCGCTAGGTTTCTTAGTAAGATTTTTA
*
86560552 GTACACTTTTTCCCTTAACCGAGGTTTTGTCCTCTAGGTTTCTTAGTAAGATTTTTA
1 GTACACTTTTTCCCTTAACCGAGGTTTTGTCCGCTAGGTTTCTTAGTAAGATTTTTA
86560609 ACGAGGCAGT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.18, C:0.18, G:0.17, T:0.46
Consensus pattern (57 bp):
GTACACTTTTTCCCTTAACCGAGGTTTTGTCCGCTAGGTTTCTTAGTAAGATTTTTA
Found at i:86561929 original size:12 final size:12
Alignment explanation
Indices: 86561912--86561950 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
86561902 CGGCCAACTC
86561912 ATATTAATTTTT
1 ATATTAATTTTT
*
86561924 ATATTATTTTTT
1 ATATTAATTTTT
*
86561936 ATA-TAATTTTA
1 ATATTAATTTTT
86561947 ATAT
1 ATAT
86561951 ATATAATACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:86562101 original size:30 final size:30
Alignment explanation
Indices: 86562067--86562129 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
86562057 ACTTAACAAG
*
86562067 CAAATGCCTTTAGAATAATAACAAAATTAA
1 CAAATGCCTTTAAAATAATAACAAAATTAA
*
86562097 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTTTAAAATAATAACAAAATTAA
86562127 CAA
1 CAA
86562130 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.56, C:0.13, G:0.05, T:0.27
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAACAAAATTAA
Found at i:86565089 original size:18 final size:17
Alignment explanation
Indices: 86565049--86565089 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
86565039 ATAATGAATA
*
86565049 ATAAATTTTATAAAATT
1 ATAAATTTTATAAAAAT
86565066 ATTAAATTTTAATAAAAAT
1 A-TAAATTTT-ATAAAAAT
86565085 ATAAA
1 ATAAA
86565090 AATTTAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 12 0.57
19 8 0.38
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATAAATTTTATAAAAAT
Found at i:86565095 original size:19 final size:19
Alignment explanation
Indices: 86565046--86565095 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
86565036 ATTATAATGA
* *
86565046 ATAATAAATTTTATAAAATT
1 ATAA-AAATTTAATAAAAAT
* *
86565066 ATTAAATTTTAATAAAAAT
1 ATAAAAATTTAATAAAAAT
86565085 ATAAAAATTTA
1 ATAAAAATTTA
86565096 GAATTTTTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
19 21 0.88
20 3 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATAAAAATTTAATAAAAAT
Found at i:86565379 original size:29 final size:29
Alignment explanation
Indices: 86565340--86565411 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 29
86565330 ATTTCTTTAC
*
86565340 ATTTTGTATAATTTTCTTATGAGTTTATAA
1 ATTTT-TATAATTTTCTTATAAGTTTATAA
* * *
86565370 ATTTTTATAATATTTTTTATAATTTTATAT
1 ATTTTTATAAT-TTTCTTATAAGTTTATAA
86565400 A-TTTTATAATTT
1 ATTTTTATAATTT
86565412 GTTACAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 2 0.05
29 15 0.41
30 20 0.54
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (29 bp):
ATTTTTATAATTTTCTTATAAGTTTATAA
Found at i:86565388 original size:12 final size:11
Alignment explanation
Indices: 86565363--86565436 Score: 56
Period size: 10 Copynumber: 7.4 Consensus size: 11
86565353 TTCTTATGAG
86565363 TTTATAA-ATT
1 TTTATAATATT
86565373 TTTATAATATT
1 TTTATAATATT
*
86565384 TTT-T-ATAAT
1 TTTATAATATT
86565393 TTTAT-ATA-T
1 TTTATAATATT
86565402 TTTATAAT-TT
1 TTTATAATATT
* *
86565412 GTTACAAT-TT
1 TTTATAATATT
86565422 TTTAT-ATAGTT
1 TTTATAATA-TT
86565433 TTTA
1 TTTA
86565437 CGATTTTTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
9 15 0.28
10 26 0.49
11 12 0.23
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (11 bp):
TTTATAATATT
Found at i:86565404 original size:17 final size:17
Alignment explanation
Indices: 86565379--86565411 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
86565369 AATTTTTATA
*
86565379 ATATTTTTTATAATTTT
1 ATATATTTTATAATTTT
86565396 ATATATTTTATAATTT
1 ATATATTTTATAATTT
86565412 GTTACAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATATATTTTATAATTTT
Found at i:86565447 original size:69 final size:69
Alignment explanation
Indices: 86565300--86565426 Score: 163
Period size: 68 Copynumber: 1.9 Consensus size: 69
86565290 TTGGTATGAT
* * *
86565300 AATTTTTATAAATTTTTTTATGAAATTTATATTTCTTTACATTTTGTATAATTTTCTTATGAGTT
1 AATTTTTATAAATTTTTTTATGAAATTTATATATCTTTACAATTTGTACAATTTTCTTATGAGTT
86565365 TATA
66 TATA
* *
86565369 AATTTTTAT-AATATTTTTTAT-AATTTTATATAT-TTTATAATTTGTTACAATTTT-TTAT
1 AATTTTTATAAAT-TTTTTTATGAAATTTATATATCTTTACAATTTG-TACAATTTTCTTAT
86565427 ATAGTTTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
67 13 0.25
68 21 0.41
69 17 0.33
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.61
Consensus pattern (69 bp):
AATTTTTATAAATTTTTTTATGAAATTTATATATCTTTACAATTTGTACAATTTTCTTATGAGTT
TATA
Found at i:86565452 original size:18 final size:19
Alignment explanation
Indices: 86565401--86565462 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
86565391 ATTTTATATA
*
86565401 TTTTATAATTTGTTACAATT
1 TTTTAT-ATTTTTTACAATT
*
86565421 TTTTATATAGTTTTTACGA-T
1 TTTTATAT--TTTTTACAATT
86565441 TTTTATATTTTTT-CTAATT
1 TTTTATATTTTTTAC-AATT
86565460 TTT
1 TTT
86565463 AATACATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
17 1 0.03
18 6 0.17
19 6 0.17
20 15 0.43
21 7 0.20
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (19 bp):
TTTTATATTTTTTACAATT
Found at i:86573922 original size:7 final size:7
Alignment explanation
Indices: 86573910--86573940 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
86573900 ACTTTTCTAA
86573910 TCATCCC
1 TCATCCC
*
86573917 TCATCCA
1 TCATCCC
86573924 TCATCCC
1 TCATCCC
86573931 TCATCCC
1 TCATCCC
86573938 TCA
1 TCA
86573941 CTAATTCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.19, C:0.52, G:0.00, T:0.29
Consensus pattern (7 bp):
TCATCCC
Found at i:86574395 original size:34 final size:34
Alignment explanation
Indices: 86574351--86574418 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
86574341 TTATTGCGTT
*
86574351 AGTTTTGCTAAAATCTATTTCATTCATATAGTTG
1 AGTTCTGCTAAAATCTATTTCATTCATATAGTTG
86574385 AGTTCTGCTAAAATCTATTTCATTCATATAGTTG
1 AGTTCTGCTAAAATCTATTTCATTCATATAGTTG
86574419 CATGTTAGGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.46
Consensus pattern (34 bp):
AGTTCTGCTAAAATCTATTTCATTCATATAGTTG
Found at i:86578088 original size:46 final size:45
Alignment explanation
Indices: 86577928--86578144 Score: 158
Period size: 46 Copynumber: 4.7 Consensus size: 45
86577918 CTATCTGTGT
* * * *
86577928 CGATGCCATGTCCTAGACAGGTCTTACACTGACACATG--TCAA-GC
1 CGATG-CATGTCCCAGACATGTCTTACACTGGCTC-TGCCTCAATGC
* * *
86577972 CGATGTCATGTCCCAGACAGGTCTTACACTGGCT-TGCATATCTCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTGGCTCTGC----CTCAATGC
* *
86578021 CGATGTATGTCCCAGATATGTCTTACACTGGCTCTCGCCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-GCCTCAATGC
* ** * *
86578067 CGATGCATGTCCTAGACATGTCTTACGTTGGCTCT-CAT-AATGTGGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTGCCTCAA--T-GC
*
86578113 TGATGCATGTCCCAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
86578145 ACACATATCA
Statistics
Matches: 140, Mismatches: 21, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
42 2 0.01
43 2 0.01
44 32 0.23
45 1 0.01
46 65 0.46
48 28 0.20
49 8 0.06
50 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTGCCTCAATGC
Found at i:86578092 original size:94 final size:92
Alignment explanation
Indices: 86577928--86578144 Score: 219
Period size: 92 Copynumber: 2.3 Consensus size: 92
86577918 CTATCTGTGT
* * * *
86577928 CGATGCCATGTCCTAGACAGGTCTTACACTGACACAT-G--TCAAGCCGATGTCATGTCCCAGAC
1 CGATG-CATGTCCCAGACATGTCTTACACTGGCTC-TCGCCTCAAGCCGATGTCATGTCCCAGAC
*
86577990 AGGTCTTACACTGGCT-TGCATATCTCGAGGC
64 AGGTCTTACACTGGCTCT-CATA-AT-GAGGC
* * *
86578021 CGATGTATGTCCCAGATATGTCTTACACTGGCTCTCGCCTCAATGCCGATG-CATGTCCTAGACA
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGCCTCAA-GCCGATGTCATGTCCCAGACA
* ** * *
86578085 TGTCTTACGTTGGCTCTCATAATGTGGT
65 GGTCTTACACTGGCTCTCATAATGAGGC
*
86578113 TGATGCATGTCCCAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
86578145 ACACATATCA
Statistics
Matches: 103, Mismatches: 16, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
91 1 0.01
92 56 0.54
93 6 0.06
94 32 0.31
95 8 0.08
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGCCTCAAGCCGATGTCATGTCCCAGACAG
GTCTTACACTGGCTCTCATAATGAGGC
Found at i:86584620 original size:21 final size:22
Alignment explanation
Indices: 86584579--86584620 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
86584569 CTTCATTCTA
*
86584579 CTATTTTTTATATCCCTCAAAG
1 CTATTTTTTATAACCCTCAAAG
86584601 CTATTTTCTTA-AACCC-CAAA
1 CTATTTT-TTATAACCCTCAAA
86584621 AATCCTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 4 0.22
22 11 0.61
23 3 0.17
ACGTcount: A:0.31, C:0.26, G:0.02, T:0.40
Consensus pattern (22 bp):
CTATTTTTTATAACCCTCAAAG
Found at i:86588387 original size:7 final size:7
Alignment explanation
Indices: 86588375--86588405 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
86588365 ACTTTTCTAA
86588375 TCATCCC
1 TCATCCC
86588382 TCATCCC
1 TCATCCC
*
86588389 TCATCCT
1 TCATCCC
86588396 TCATCCC
1 TCATCCC
86588403 TCA
1 TCA
86588406 GTTATCCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.16, C:0.52, G:0.00, T:0.32
Consensus pattern (7 bp):
TCATCCC
Found at i:86591845 original size:39 final size:39
Alignment explanation
Indices: 86591797--86591874 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
86591787 AAGAAAAAAG
*
86591797 AAAAAGAGAAAGACATATGGCCTAAGGGCTTTTAAGTTT
1 AAAAAGAGAAAGACACATGGCCTAAGGGCTTTTAAGTTT
*
86591836 AAAACGAGAAAGACACATGGCCTAAGGGCTTTTAAGTTT
1 AAAAAGAGAAAGACACATGGCCTAAGGGCTTTTAAGTTT
86591875 CAAATTTCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.24
Consensus pattern (39 bp):
AAAAAGAGAAAGACACATGGCCTAAGGGCTTTTAAGTTT
Found at i:86605556 original size:25 final size:25
Alignment explanation
Indices: 86605527--86605581 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
86605517 ATTAGTACAT
86605527 ATTTTTTGTAATTAATTTAATAGTC
1 ATTTTTTGTAATTAATTTAATAGTC
*
86605552 ATTTTTTGTAATTAATTTAATAGTG
1 ATTTTTTGTAATTAATTTAATAGTC
86605577 ATTTT
1 ATTTT
86605582 CTTCAATCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.31, C:0.02, G:0.09, T:0.58
Consensus pattern (25 bp):
ATTTTTTGTAATTAATTTAATAGTC
Found at i:86610735 original size:20 final size:20
Alignment explanation
Indices: 86610710--86610771 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
86610700 CAAAATGTTT
*
86610710 ATATATATTAACTACTTAAA
1 ATATATATTAACTATTTAAA
* *
86610730 ATATATTTTAA-AATTTAAA
1 ATATATATTAACTATTTAAA
*
86610749 TTAATATATTAACTATTTAAA
1 AT-ATATATTAACTATTTAAA
86610770 AT
1 AT
86610772 TTAGATTTAC
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
19 7 0.21
20 18 0.55
21 8 0.24
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATATATTAACTATTTAAA
Found at i:86614939 original size:31 final size:31
Alignment explanation
Indices: 86614882--86614940 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
86614872 TTCTTTAGGT
*
86614882 CCCTTAAAAGTTAAATAAAAAAAATTTTGGG
1 CCCTTAAAAGCTAAATAAAAAAAATTTTGGG
* *
86614913 CCCTTCAAAGCTAAA-AAATAATAATTTT
1 CCCTTAAAAGCTAAATAAA-AAAAATTTT
86614941 TTGAACCTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 3 0.12
31 21 0.88
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.31
Consensus pattern (31 bp):
CCCTTAAAAGCTAAATAAAAAAAATTTTGGG
Found at i:86615367 original size:19 final size:20
Alignment explanation
Indices: 86615343--86615381 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
86615333 GAAGTATGAC
*
86615343 ATTTTG-TATTAGTGTTTTT
1 ATTTTGATATAAGTGTTTTT
86615362 ATTTTGCATATAAGTGTTTT
1 ATTTTG-ATATAAGTGTTTT
86615382 AAAATTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.21, C:0.03, G:0.15, T:0.62
Consensus pattern (20 bp):
ATTTTGATATAAGTGTTTTT
Found at i:86615417 original size:24 final size:23
Alignment explanation
Indices: 86615378--86615425 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 23
86615368 CATATAAGTG
*
86615378 TTTTAAAATTTGAA-TTTTAAAT
1 TTTTAAAAATTGAATTTTTAAAT
86615400 TTTTAAATAATTGAAATTTTTAAAT
1 TTTTAAA-AATTG-AATTTTTAAAT
86615425 T
1 T
86615426 AATTAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 4 0.18
24 2 0.09
25 9 0.41
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (23 bp):
TTTTAAAAATTGAATTTTTAAAT
Found at i:86615420 original size:18 final size:17
Alignment explanation
Indices: 86615394--86615434 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
86615384 AATTTGAATT
86615394 TTAAATTTTTAAA-TAA
1 TTAAATTTTTAAATTAA
86615410 TTGAAATTTTTAAATTAA
1 TT-AAATTTTTAAATTAA
86615428 TTAAATT
1 TTAAATT
86615435 ATAGTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.09
17 16 0.70
18 5 0.22
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (17 bp):
TTAAATTTTTAAATTAA
Found at i:86618003 original size:14 final size:14
Alignment explanation
Indices: 86617984--86618010 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86617974 TATTTTTAAT
86617984 AAATATTTACGAAA
1 AAATATTTACGAAA
86617998 AAATATTTACGAA
1 AAATATTTACGAA
86618011 GTTAGTTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (14 bp):
AAATATTTACGAAA
Found at i:86619122 original size:16 final size:16
Alignment explanation
Indices: 86619103--86619136 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
86619093 AAATGAATAT
* *
86619103 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
86619119 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
86619135 AT
1 AT
86619137 TGGATATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:86625742 original size:11 final size:11
Alignment explanation
Indices: 86625726--86625750 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86625716 ATATCTAGAA
86625726 TTCTCTTCATT
1 TTCTCTTCATT
86625737 TTCTCTTCATT
1 TTCTCTTCATT
86625748 TTC
1 TTC
86625751 ATCAACTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:86627028 original size:25 final size:25
Alignment explanation
Indices: 86626999--86627050 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
86626989 AAGAATAATT
**
86626999 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
86627024 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
86627049 TG
1 TG
86627051 TCAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Found at i:86631201 original size:25 final size:24
Alignment explanation
Indices: 86631173--86631227 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
86631163 AAAATTCAAG
* * *
86631173 GTTATGACTTTTCTATTAATTTGAT
1 GTTATGACATTT-TATGAATTTGAC
*
86631198 GTTACTGTCATTTTATGAATTTGAC
1 GTTA-TGACATTTTATGAATTTGAC
86631223 GTTAT
1 GTTAT
86631228 TCTGGGAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 1 0.04
25 18 0.72
26 6 0.24
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.53
Consensus pattern (24 bp):
GTTATGACATTTTATGAATTTGAC
Found at i:86637021 original size:13 final size:13
Alignment explanation
Indices: 86637003--86637049 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
86636993 AATTTCATTT
86637003 TTTATTTTTCTCG
1 TTTATTTTTCTCG
**
86637016 TTTATTTTAT-TTT
1 TTTATTTT-TCTCG
86637029 TTTATTTTTCTCG
1 TTTATTTTTCTCG
86637042 TTTATTTT
1 TTTATTTT
86637050 ATTTATCATC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 1 0.04
13 26 0.93
14 1 0.04
ACGTcount: A:0.11, C:0.09, G:0.04, T:0.77
Consensus pattern (13 bp):
TTTATTTTTCTCG
Found at i:86637036 original size:26 final size:26
Alignment explanation
Indices: 86637000--86637053 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
86636990 TGCAATTTCA
86637000 TTTTTTATTTTTCTCGTTTATTTTAT
1 TTTTTTATTTTTCTCGTTTATTTTAT
86637026 TTTTTTATTTTTCTCGTTTATTTTAT
1 TTTTTTATTTTTCTCGTTTATTTTAT
86637052 TT
1 TT
86637054 ATCATCATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.11, C:0.07, G:0.04, T:0.78
Consensus pattern (26 bp):
TTTTTTATTTTTCTCGTTTATTTTAT
Found at i:86644415 original size:37 final size:37
Alignment explanation
Indices: 86644360--86644474 Score: 194
Period size: 37 Copynumber: 3.1 Consensus size: 37
86644350 AGAAAGTTAA
* *
86644360 AAGGAAATAAAAACGCATTAGTGAATGAAAAATATAC
1 AAGGTAATAAAAAGGCATTAGTGAATGAAAAATATAC
86644397 AAGGTAATAAAAAGGCATTAGTGAATGAAAAATATAC
1 AAGGTAATAAAAAGGCATTAGTGAATGAAAAATATAC
*
86644434 AAGGTAATAAAGAGGCATTAGTGAATGAAAAAGTATAC
1 AAGGTAATAAAAAGGCATTAGTGAATGAAAAA-TATAC
86644472 AAG
1 AAG
86644475 CTGCATGATG
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
37 66 0.89
38 8 0.11
ACGTcount: A:0.54, C:0.06, G:0.20, T:0.20
Consensus pattern (37 bp):
AAGGTAATAAAAAGGCATTAGTGAATGAAAAATATAC
Found at i:86645807 original size:25 final size:25
Alignment explanation
Indices: 86645778--86645826 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
86645768 AAAGAAGAAC
86645778 CGAATTTG-ACACTCACCAAAACAAA
1 CGAATTTGCA-ACTCACCAAAACAAA
*
86645803 CGAATTTGCAAGTCACCAAAACAA
1 CGAATTTGCAACTCACCAAAACAA
86645827 TGGAGACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.47, C:0.27, G:0.10, T:0.16
Consensus pattern (25 bp):
CGAATTTGCAACTCACCAAAACAAA
Found at i:86646298 original size:3 final size:3
Alignment explanation
Indices: 86646290--86646317 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
86646280 AATTTAGTAC
86646290 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
86646318 CAAGAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:86669782 original size:25 final size:25
Alignment explanation
Indices: 86669728--86669876 Score: 138
Period size: 25 Copynumber: 6.0 Consensus size: 25
86669718 ACTATCTATG
* ** *
86669728 AAGCCTTTGTAGCGAACTCACTGTG
1 AAGCCTTTGTGGCGAACTCTTTGTA
* *
86669753 CAGCCTTTATGGCGAACTCTTTGTA
1 AAGCCTTTGTGGCGAACTCTTTGTA
* * *
86669778 AAGCCTTTATGGTGAACTCTCTGTA
1 AAGCCTTTGTGGCGAACTCTTTGTA
* * * *
86669803 AAGCCTCTGTGGCAAACTCTATGTG
1 AAGCCTTTGTGGCGAACTCTTTGTA
*
86669828 AAGCCTTTGTGGCGAACT-TTCTCTA
1 AAGCCTTTGTGGCGAACTCTT-TGTA
* *
86669853 AAACTTTTGTGGCGAACTCTTTGT
1 AAGCCTTTGTGGCGAACTCTTTGT
86669877 GAAACCTGTG
Statistics
Matches: 99, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
24 1 0.01
25 96 0.97
26 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.34
Consensus pattern (25 bp):
AAGCCTTTGTGGCGAACTCTTTGTA
Found at i:86669782 original size:50 final size:50
Alignment explanation
Indices: 86669698--86669845 Score: 140
Period size: 50 Copynumber: 3.0 Consensus size: 50
86669688 ATGGCATATT
* *
86669698 CTGTGAAGCCT-TAATGGCAAACTATCTATG--AAGCCTTTGTAGCGAACTCA
1 CTGTAAAGCCTCT-ATGGCAAAC--TCTATGTAAAGCCTTTGTGGCGAACTCA
** * * * * * *
86669748 CTGTGCAGCCTTTATGGCGAACTCTTTGTAAAGCCTTTATGGTGAACTCT
1 CTGTAAAGCCTCTATGGCAAACTCTATGTAAAGCCTTTGTGGCGAACTCA
* *
86669798 CTGTAAAGCCTCTGTGGCAAACTCTATGTGAAGCCTTTGTGGCGAACT
1 CTGTAAAGCCTCTATGGCAAACTCTATGTAAAGCCTTTGTGGCGAACT
86669846 TTCTCTAAAA
Statistics
Matches: 79, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
48 5 0.06
50 73 0.92
51 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (50 bp):
CTGTAAAGCCTCTATGGCAAACTCTATGTAAAGCCTTTGTGGCGAACTCA
Found at i:86678711 original size:28 final size:28
Alignment explanation
Indices: 86678658--86678711 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
86678648 GAGAAAATAA
* *
86678658 TTTAATTAAGTAAATTAATTAAATTTAT
1 TTTAAATAAGTAAATTAAATAAATTTAT
86678686 TTTAAATAAGTAAA-TAAATAATATTT
1 TTTAAATAAGTAAATTAAATAA-ATTT
86678712 TTGGAATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 6 0.26
28 17 0.74
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (28 bp):
TTTAAATAAGTAAATTAAATAAATTTAT
Found at i:86680388 original size:19 final size:19
Alignment explanation
Indices: 86680331--86680389 Score: 50
Period size: 19 Copynumber: 3.1 Consensus size: 19
86680321 GAAAAAAATG
*
86680331 ATAAAAAATAATAAAATTT-
1 ATAAAAAATTAT-AAATTTA
* *
86680350 A-GAAAAATTATTAACTTTTA
1 ATAAAAAATTA-TAA-ATTTA
86680370 ATAAAAAATTATAAATTTA
1 ATAAAAAATTATAAATTTA
86680389 A
1 A
86680390 AAATTATTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
18 9 0.29
19 10 0.32
20 4 0.13
21 8 0.26
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
ATAAAAAATTATAAATTTA
Found at i:86680620 original size:20 final size:20
Alignment explanation
Indices: 86680595--86680651 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
86680585 TACGAAAATT
86680595 TTTATAATTTTTTTACGAAA
1 TTTATAATTTTTTTACGAAA
* **
86680615 TTTAT-ATTTATTTAC-ATT
1 TTTATAATTTTTTTACGAAA
*
86680633 TTGTATAATTTTCTTACGA
1 TT-TATAATTTTTTTACGA
86680652 CTTTATAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 3 0.10
19 12 0.41
20 13 0.45
21 1 0.03
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (20 bp):
TTTATAATTTTTTTACGAAA
Found at i:86682845 original size:2 final size:2
Alignment explanation
Indices: 86682838--86682868 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
86682828 TATCATCTGA
*
86682838 AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
86682869 GACGAAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:86682909 original size:18 final size:20
Alignment explanation
Indices: 86682888--86682924 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
86682878 GAAATAAAGG
86682888 ACATA-ATAGAAA-AAATAT
1 ACATATATAGAAATAAATAT
*
86682906 ACATATATATAAATAAATA
1 ACATATATAGAAATAAATA
86682925 AAAGAAACCC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 6 0.38
20 5 0.31
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (20 bp):
ACATATATAGAAATAAATAT
Found at i:86694202 original size:2 final size:2
Alignment explanation
Indices: 86694195--86694220 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
86694185 GGTGAAATGG
86694195 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
86694221 GAGATAAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86694324 original size:54 final size:54
Alignment explanation
Indices: 86694242--86694345 Score: 208
Period size: 54 Copynumber: 1.9 Consensus size: 54
86694232 TTCTAGTGTG
86694242 GACTAATTAAAATTATTGAATTTGTTATAATCTTGTAATGTTTTCGGAAATTTT
1 GACTAATTAAAATTATTGAATTTGTTATAATCTTGTAATGTTTTCGGAAATTTT
86694296 GACTAATTAAAATTATTGAATTTGTTATAATCTTGTAATGTTTTCGGAAA
1 GACTAATTAAAATTATTGAATTTGTTATAATCTTGTAATGTTTTCGGAAA
86694346 ATTATTAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.46
Consensus pattern (54 bp):
GACTAATTAAAATTATTGAATTTGTTATAATCTTGTAATGTTTTCGGAAATTTT
Found at i:86704354 original size:14 final size:14
Alignment explanation
Indices: 86704321--86704354 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
86704311 CAAGATGGGA
*
86704321 ATTATCTTGAAAAC
1 ATTATCTTCAAAAC
86704335 -TTATCTTCAAAAC
1 ATTATCTTCAAAAC
86704348 ATTATCT
1 ATTATCT
86704355 ATTATGGACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (14 bp):
ATTATCTTCAAAAC
Found at i:86707683 original size:26 final size:26
Alignment explanation
Indices: 86707627--86707684 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
86707617 TTTTAATTAA
* *
86707627 GAAAATTACTTAAAAATAATATAGTT
1 GAAAATTAATTAAAAACAATATAGTT
* *
86707653 TAAAATTAATTAATAAACATTATA-TT
1 GAAAATTAATTAA-AAACAATATAGTT
86707679 GAAAAT
1 GAAAAT
86707685 AGGGGTGCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.36
Consensus pattern (26 bp):
GAAAATTAATTAAAAACAATATAGTT
Found at i:86711385 original size:28 final size:28
Alignment explanation
Indices: 86711349--86711590 Score: 149
Period size: 28 Copynumber: 8.6 Consensus size: 28
86711339 CTCAAGATTT
* *
86711349 GCCATAAAGGCTTTCCTTTTTTTAATTC
1 GCCACAAAGGCTTTCCTTTTTATAATTC
*
86711377 GCCACAAAGGCTATT-CTTTTTATGATTC
1 GCCACAAAGGCT-TTCCTTTTTATAATTC
* * *
86711405 ACCATAAAGGCTTTCCTTTCTATGAA-TC
1 GCCACAAAGGCTTTCCTTTTTAT-AATTC
** *
86711433 ATCACAAAGGCTTTCCTTTTTATGATTC
1 GCCACAAAGGCTTTCCTTTTTATAATTC
86711461 GCCACAAAGGCTATT-CTTTTTATGAA-TC
1 GCCACAAAGGCT-TTCCTTTTTAT-AATTC
* * *
86711489 ACCATAAAGG-TTTATCTTTTTATGAA-TC
1 GCCACAAAGGCTTT-CCTTTTTAT-AATTC
* ** * *
86711517 ACTTCAATGAC-TTCCTTTTTTATGAATT-
1 GCCACAAAGGCTTTCC-TTTTTAT-AATTC
* * * *
86711545 GCCACAAAGTCTTTTCTTTTTATGACTC
1 GCCACAAAGGCTTTCCTTTTTATAATTC
* *
86711573 ACAACAAAGGCTTTCCTT
1 GCCACAAAGGCTTTCCTT
86711591 ATCTATAGTG
Statistics
Matches: 167, Mismatches: 34, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
26 2 0.01
27 7 0.04
28 148 0.89
29 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.41
Consensus pattern (28 bp):
GCCACAAAGGCTTTCCTTTTTATAATTC
Found at i:86711411 original size:56 final size:55
Alignment explanation
Indices: 86711350--86711590 Score: 211
Period size: 56 Copynumber: 4.3 Consensus size: 55
86711340 TCAAGATTTG
* * *
86711350 CCATAAAGGCTTTCCTTTTTTTAATTCGCCACAAAGGCTATTCTTTTTATGATTCA
1 CCATAAAGGCTTTCCTTTTTTGAA-TCACCACAAAGGCTTTTCTTTTTATGATTCA
* * * *
86711406 CCATAAAGGCTTTCCTTTCTATGAATCATCACAAAGGCTTTCCTTTTTATGATTCG
1 CCATAAAGGCTTTCCTTT-TTTGAATCACCACAAAGGCTTTTCTTTTTATGATTCA
* * *
86711462 CCACAAAGGCTATT-CTTTTTATGAATCACCATAAAGG-TTTATCTTTTTATGAATCA
1 CCATAAAGGCT-TTCCTTTTT-TGAATCACCACAAAGGCTTT-TCTTTTTATGATTCA
* * * ** * *
86711518 -CTTCAATGAC-TTCCTTTTTTATGAATTGCCACAAAGTCTTTTCTTTTTATGACTCA
1 CCAT-AAAGGCTTTCC-TTTTT-TGAATCACCACAAAGGCTTTTCTTTTTATGATTCA
* *
86711574 CAACAAAGGCTTTCCTT
1 CCATAAAGGCTTTCCTT
86711591 ATCTATAGTG
Statistics
Matches: 147, Mismatches: 28, Indels: 20
0.75 0.14 0.10
Matches are distributed among these distances:
54 2 0.01
55 6 0.04
56 126 0.86
57 13 0.09
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.41
Consensus pattern (55 bp):
CCATAAAGGCTTTCCTTTTTTGAATCACCACAAAGGCTTTTCTTTTTATGATTCA
Found at i:86711453 original size:84 final size:84
Alignment explanation
Indices: 86711354--86711596 Score: 296
Period size: 84 Copynumber: 2.9 Consensus size: 84
86711344 GATTTGCCAT
*
86711354 AAAGGCTTTCCTTTTTTTAATTCGCCACAAAGGCTATTCTTTTTATGATTCACCATAAAGGCTTT
1 AAAGGCTTTCCTTTTTTTAATTCGCCACAAAGGCTATTCTTTTTATGAATCACCATAAAGGCTTT
86711419 CCTTTCTATGAATCA-TCAC
66 CCTTTCTATGAATCACT-AC
* *
86711438 AAAGGCTTTCCTTTTTATGATTCGCCACAAAGGCTATTCTTTTTATGAATCACCATAAAGG-TTT
1 AAAGGCTTTCCTTTTTTTAATTCGCCACAAAGGCTATTCTTTTTATGAATCACCATAAAGGCTTT
* * *
86711502 ATCTTTTTATGAATCACTTC
66 -CCTTTCTATGAATCACTAC
* * * * * * *
86711522 AATGAC-TTCCTTTTTTATGAATT-GCCACAAAGTCTTTTCTTTTTATGACTCACAACAAAGGCT
1 AAAGGCTTTCCTTTTTT-T-AATTCGCCACAAAGGCTATTCTTTTTATGAATCACCATAAAGGCT
86711585 TTCCTTATCTAT
64 TTCCTT-TCTAT
86711597 AGTGTTTTTC
Statistics
Matches: 136, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
83 12 0.09
84 113 0.83
85 11 0.08
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.42
Consensus pattern (84 bp):
AAAGGCTTTCCTTTTTTTAATTCGCCACAAAGGCTATTCTTTTTATGAATCACCATAAAGGCTTT
CCTTTCTATGAATCACTAC
Found at i:86717762 original size:18 final size:18
Alignment explanation
Indices: 86717735--86717771 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
86717725 CGGTTTTCTT
*
86717735 TAGCCGAACCACTCTTGC
1 TAGCCAAACCACTCTTGC
86717753 TAGCCAAACCACTCTTGC
1 TAGCCAAACCACTCTTGC
86717771 T
1 T
86717772 TTCTTCTCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.38, G:0.14, T:0.24
Consensus pattern (18 bp):
TAGCCAAACCACTCTTGC
Found at i:86725644 original size:18 final size:18
Alignment explanation
Indices: 86725621--86725657 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
86725611 CAGTTTTCTT
86725621 TAGCCGAACCACTCTTGC
1 TAGCCGAACCACTCTTGC
86725639 TAGCCGAACCACTCTTGC
1 TAGCCGAACCACTCTTGC
86725657 T
1 T
86725658 TTCTTCTCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.38, G:0.16, T:0.24
Consensus pattern (18 bp):
TAGCCGAACCACTCTTGC
Found at i:86734196 original size:23 final size:23
Alignment explanation
Indices: 86734166--86734213 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
86734156 GGTCGCTTAC
*
86734166 TCATCTTTGAAATAATTCTATAT
1 TCATCTTTGAAATAATTCTACAT
86734189 TCATCTTTGAAATAATTCTACAT
1 TCATCTTTGAAATAATTCTACAT
86734212 TC
1 TC
86734214 TTTTAAGCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.04, T:0.46
Consensus pattern (23 bp):
TCATCTTTGAAATAATTCTACAT
Found at i:86737582 original size:16 final size:18
Alignment explanation
Indices: 86737555--86737588 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
86737545 ACATTCTTTT
86737555 TTAAATTAATTTT-TCAA
1 TTAAATTAATTTTCTCAA
86737572 TTAAA-TAATTTTCTCAA
1 TTAAATTAATTTTCTCAA
86737589 CCCAATTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TTAAATTAATTTTCTCAA
Found at i:86746005 original size:27 final size:27
Alignment explanation
Indices: 86745974--86746151 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86745964 TAAATTGTAC
86745974 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86746001 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86746027 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86746055 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86746083 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86746110 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86746137 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86746152 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86746088 original size:82 final size:81
Alignment explanation
Indices: 86745975--86746130 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86745965 AAATTGTACA
* *
86745975 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86746039 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
86746056 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86746121 TGCGAGTTGA
65 TGCGAATTGA
86746131 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86746142 original size:82 final size:81
Alignment explanation
Indices: 86745971--86746151 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
86745961 GATTAAATTG
* *
86745971 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86746036 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86746052 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86746116 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86746134 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86746152 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86754049 original size:27 final size:27
Alignment explanation
Indices: 86754018--86754195 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86754008 TAAATTGTAC
86754018 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86754045 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86754071 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86754099 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86754127 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86754154 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86754181 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86754196 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86754132 original size:82 final size:81
Alignment explanation
Indices: 86754019--86754174 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86754009 AAATTGTACA
* *
86754019 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86754083 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
86754100 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86754165 TGCGAGTTGA
65 TGCGAATTGA
86754175 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86754186 original size:82 final size:81
Alignment explanation
Indices: 86754015--86754195 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
86754005 GATTAAATTG
* *
86754015 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86754080 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86754096 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86754160 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86754178 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86754196 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86762085 original size:27 final size:27
Alignment explanation
Indices: 86762054--86762231 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86762044 TAAATTGTAC
86762054 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86762081 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86762107 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86762135 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86762163 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86762190 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86762217 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86762232 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86762168 original size:82 final size:81
Alignment explanation
Indices: 86762055--86762210 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86762045 AAATTGTACA
* *
86762055 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86762119 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
86762136 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86762201 TGCGAGTTGA
65 TGCGAATTGA
86762211 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86762222 original size:82 final size:81
Alignment explanation
Indices: 86762051--86762231 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
86762041 GATTAAATTG
* *
86762051 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86762116 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86762132 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86762196 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86762214 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86762232 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86763766 original size:34 final size:34
Alignment explanation
Indices: 86763727--86763814 Score: 101
Period size: 33 Copynumber: 2.6 Consensus size: 34
86763717 TGTGGCCTGC
* *
86763727 CCGTGTGGGCCCACACGGTCC-AAATTAGCCTTGG
1 CCGTGTGGGACCACAAGG-CCTAAATTAGCCTTGG
*
86763761 CCGTGT-GGATCACAAGGCCTAAATTAGCCTTGG
1 CCGTGTGGGACCACAAGGCCTAAATTAGCCTTGG
* *
86763794 CCGTGT-GGATCACACGGCCTA
1 CCGTGTGGGACCACAAGGCCTA
86763815 GCTCAGAATT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
32 2 0.04
33 41 0.84
34 6 0.12
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (34 bp):
CCGTGTGGGACCACAAGGCCTAAATTAGCCTTGG
Found at i:86763788 original size:33 final size:33
Alignment explanation
Indices: 86763748--86763814 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
86763738 CACACGGTCC
86763748 AAATTAGCCTTGGCCGTGTGGATCACAAGGCCT
1 AAATTAGCCTTGGCCGTGTGGATCACAAGGCCT
*
86763781 AAATTAGCCTTGGCCGTGTGGATCACACGGCCT
1 AAATTAGCCTTGGCCGTGTGGATCACAAGGCCT
86763814 A
1 A
86763815 GCTCAGAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (33 bp):
AAATTAGCCTTGGCCGTGTGGATCACAAGGCCT
Found at i:86770938 original size:11 final size:11
Alignment explanation
Indices: 86770922--86770981 Score: 86
Period size: 11 Copynumber: 5.5 Consensus size: 11
86770912 TTGTTTGACT
86770922 ATGATTCGACA
1 ATGATTCGACA
86770933 ATGATTCGACA
1 ATGATTCGACA
86770944 ATGATTCGACA
1 ATGATTCGACA
* *
86770955 GTGATTTGA-A
1 ATGATTCGACA
*
86770965 ATGATTCGACT
1 ATGATTCGACA
86770976 ATGATT
1 ATGATT
86770982 TGTATTGGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
10 8 0.19
11 35 0.81
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (11 bp):
ATGATTCGACA
Found at i:86770969 original size:21 final size:21
Alignment explanation
Indices: 86770915--86770983 Score: 86
Period size: 22 Copynumber: 3.2 Consensus size: 21
86770905 CACAAACTTG
*
86770915 TTTGACTATGATTCGACAATGA
1 TTTGACAATGATTCGAC-ATGA
*
86770937 TTCGACAATGATTCGACAGTGA
1 TTTGACAATGATTCGACA-TGA
86770959 TTTGA-AATGATTCGACTATGA
1 TTTGACAATGATTCGAC-ATGA
86770980 TTTG
1 TTTG
86770984 TATTGGAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
21 19 0.45
22 23 0.55
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.36
Consensus pattern (21 bp):
TTTGACAATGATTCGACATGA
Found at i:86773513 original size:43 final size:42
Alignment explanation
Indices: 86773452--86773562 Score: 105
Period size: 43 Copynumber: 2.6 Consensus size: 42
86773442 TGCTTAAGTG
* * * * ** *
86773452 TAAGACCATGTTTTGGATATTGGCATCGTTATATGATTTCGTA
1 TAAGACCATATCTGGGATA-TGGCATCGATATATGATAACATA
* * * *
86773495 TAAGACCCTTTCTGGGATAATGGCATCGATATGTGATAACATG
1 TAAGACCATATCTGGGAT-ATGGCATCGATATATGATAACATA
86773538 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
86773563 TGTGCGAGCT
Statistics
Matches: 55, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 7 0.13
43 47 0.85
44 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATATATGATAACATA
Found at i:86775698 original size:21 final size:21
Alignment explanation
Indices: 86775674--86775728 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
86775664 AAAGTTGAGC
86775674 TCAAGCTCGAGCTTGATAATA
1 TCAAGCTCGAGCTTGATAATA
86775695 TCAAGCTCGAGCTTGATAATA
1 TCAAGCTCGAGCTTGATAATA
86775716 TCAAGCTC-AGCTT
1 TCAAGCTCGAGCTT
86775729 CGCTCGATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (21 bp):
TCAAGCTCGAGCTTGATAATA
Found at i:86779316 original size:20 final size:22
Alignment explanation
Indices: 86779289--86779355 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 22
86779279 AAAAGACTGT
**
86779289 ATAAAATTATATGAA-TATATA
1 ATAAAATTATAAAAATTATATA
86779310 A-AAAATT-TAAAAATTATATA
1 ATAAAATTATAAAAATTATATA
* **
86779330 ATAAAATTATTAAAACAATATA
1 ATAAAATTATAAAAATTATATA
86779352 ATAA
1 ATAA
86779356 TTTAGGATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
19 4 0.11
20 13 0.34
21 7 0.18
22 14 0.37
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (22 bp):
ATAAAATTATAAAAATTATATA
Found at i:86784648 original size:35 final size:35
Alignment explanation
Indices: 86784609--86784675 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
86784599 GTTTTTGCTT
*
86784609 CTCTTTTAGTCTTGAAGGGAACAATATTTTTGTAA
1 CTCTTCTAGTCTTGAAGGGAACAATATTTTTGTAA
*
86784644 CTCTTCTAGTTTTGAAGGGAACAATATTTTTG
1 CTCTTCTAGTCTTGAAGGGAACAATATTTTTG
86784676 CAGCGATAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (35 bp):
CTCTTCTAGTCTTGAAGGGAACAATATTTTTGTAA
Found at i:86788368 original size:54 final size:54
Alignment explanation
Indices: 86788187--86788381 Score: 259
Period size: 55 Copynumber: 3.6 Consensus size: 54
86788177 CTTACCATTA
* * * *
86788187 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATG
* *
86788240 CCATGCCTTGGCATGGTCTTACATGAGA-CCTTTGCCTTATAGTAACTCATCAATG
1 CCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATG
* * * *
86788295 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTCATAGAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATG
*
86788349 CCATGCCTTGGCATGGTCTTACATGATATCCTT
1 CCATGCCTTGACATGGTCTTACATGATATCCTT
86788382 ATCTTACCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 2 0.02
53 32 0.26
54 42 0.34
55 45 0.37
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (54 bp):
CCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATG
Found at i:86788418 original size:47 final size:47
Alignment explanation
Indices: 86788360--86788481 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
86788350 CATGCCTTGG
* *
86788360 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* * *
86788407 GATGGTTTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
86788454 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
86788482 GTGCCAATGT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:86788555 original size:47 final size:45
Alignment explanation
Indices: 86788344--86788612 Score: 157
Period size: 47 Copynumber: 5.8 Consensus size: 45
86788334 TAGAACTTAT
* * * * *
86788344 CAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-TTAC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT-GCAATAC
*** * * *
86788389 CAAATGCCATGTTCCAAAGATGGTTTTACATGGTATCCTTGTC-TTAC
1 C-AATGCCATG-TCTTGACATGGTCTTACATGGTATCCTTG-CAATAC
* *** * *
86788436 CAAATGTCATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTAGTGC
1 C-AATGCCATG-TCTTGACATGGTCTTACATGGTATCCTTG-C--AATAC
* ** ** * *
86788486 CAATGTCACATCTTGATGTGGTCTTACATGG-AGTCCTTAATCAATGC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTA-TCCTT--GCAATAC
* * **
86788533 CAATGCCATGTTTTGACATGGTCTTACACGGTATCCTTGCCTTAC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCAATAC
86788578 CAATGCCATGTCTTGACATGGTCTTACATGGTATC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATC
86788613 TTTAACCGTC
Statistics
Matches: 178, Mismatches: 36, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
45 37 0.21
46 9 0.05
47 99 0.56
48 22 0.12
49 8 0.04
50 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (45 bp):
CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCAATAC
Found at i:86796507 original size:45 final size:45
Alignment explanation
Indices: 86796447--86796537 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
86796437 GACATGTTGG
86796447 TGTGTTGGAGAGTGTTTAGCTTTATGCTACACTTATGGGATATGT
1 TGTGTTGGAGAGTGTTTAGCTTTATGCTACACTTATGGGATATGT
86796492 TGTGTTGGAGAGTGTTTAGCTTTATGCTACACTTATGGGATATGT
1 TGTGTTGGAGAGTGTTTAGCTTTATGCTACACTTATGGGATATGT
86796537 T
1 T
86796538 AGACTCTTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.20, C:0.09, G:0.29, T:0.43
Consensus pattern (45 bp):
TGTGTTGGAGAGTGTTTAGCTTTATGCTACACTTATGGGATATGT
Found at i:86807339 original size:19 final size:19
Alignment explanation
Indices: 86807304--86807341 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
86807294 TTCCAACTTA
*
86807304 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
86807323 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
86807342 TCTGATAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:86822944 original size:40 final size:40
Alignment explanation
Indices: 86822898--86823005 Score: 146
Period size: 40 Copynumber: 2.6 Consensus size: 40
86822888 TTGACGATAA
*
86822898 TTCGGCTATGTATGGCATTTAGTGTGC-GATTCAAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCAGATTCAA-ATAGC
*
86822938 TTCGGCTATGTATGGCACTTAGTGTGCGAGATTGAAATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGC-AGATTCAAATAGC
* *
86822979 TTCGGATATGTTTTGGCACTTAGTGTG
1 TTCGGCTATG-TATGGCACTTAGTGTG
86823006 TGAAAATTCA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
40 26 0.43
41 14 0.23
42 21 0.34
ACGTcount: A:0.21, C:0.14, G:0.29, T:0.36
Consensus pattern (40 bp):
TTCGGCTATGTATGGCACTTAGTGTGCAGATTCAAATAGC
Found at i:86824534 original size:26 final size:26
Alignment explanation
Indices: 86824502--86824553 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
86824492 TACATAAGAA
86824502 AAAGAAAAAGAAACCATTCCAATATC
1 AAAGAAAAAGAAACCATTCCAATATC
86824528 AAAGAAAAAGAAACCATTCCAATATC
1 AAAGAAAAAGAAACCATTCCAATATC
86824554 CCCTTTTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.58, C:0.19, G:0.08, T:0.15
Consensus pattern (26 bp):
AAAGAAAAAGAAACCATTCCAATATC
Found at i:86834390 original size:72 final size:72
Alignment explanation
Indices: 86834293--86834518 Score: 249
Period size: 72 Copynumber: 3.1 Consensus size: 72
86834283 TGTGATCAGG
* * *
86834293 CCCGTGAGTAACTCACTGAGTGAGCATATCATGTTAATGTTTTGGGGTCCAGGTACTGACTTTGT
1 CCCGTGAGTAACTCAATGAGCGAGCATATCATGTTAATGTTTTAGGGTCCAGGTACTGACTTTGT
86834358 GTATAAA
66 GTATAAA
* ** * * *
86834365 CTCGTGAGTAACTCGTTGAGCGAGCATATCATGTTAATGTTTTAAGGTCTAGGTATTGACTTTGT
1 CCCGTGAGTAACTCAATGAGCGAGCATATCATGTTAATGTTTTAGGGTCCAGGTACTGACTTTGT
*
86834430 GTATAAG
66 GTATAAA
* * * * * *
86834437 CCCGTGAGTAGCTCAATGAGC-AGGCAT-TACATGATAATGCTTTCGGGTCCGGGTGCTGACTTT
1 CCCGTGAGTAACTCAATGAGCGA-GCATAT-CATGTTAATGTTTTAGGGTCCAGGTACTGACTTT
* *
86834500 GTGTACAGA
64 GTGTATAAA
*
86834509 CCCATGAGTA
1 CCCGTGAGTA
86834519 GCTGAAATGC
Statistics
Matches: 127, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
71 2 0.02
72 125 0.98
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (72 bp):
CCCGTGAGTAACTCAATGAGCGAGCATATCATGTTAATGTTTTAGGGTCCAGGTACTGACTTTGT
GTATAAA
Found at i:86843089 original size:20 final size:20
Alignment explanation
Indices: 86843060--86843098 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86843050 TGATTGATTG
* *
86843060 TGATTGAATTGTATTTGAAT
1 TGATTAAATTGTATGTGAAT
86843080 TGATTAAATTGTATGTGAA
1 TGATTAAATTGTATGTGAA
86843099 ATGTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
TGATTAAATTGTATGTGAAT
Found at i:86846277 original size:102 final size:102
Alignment explanation
Indices: 86846128--86846338 Score: 289
Period size: 102 Copynumber: 2.1 Consensus size: 102
86846118 AGGGACACAA
* * * *
86846128 GCGTGTGCTTGGCCGTGTAAAAACCCTTGTAGGTTCGAAATGGAAAATAAATCCAGATATTTCAA
1 GCGTGTGCTTGGCCGTGTAAAAACCCCTGTAGGTTAGAAACGGAAAATAAATCCAGATAATTCAA
* * *
86846193 CACTGGTGAGGGACACAGCTGTATCCTCAAGCACATGG
66 CACGGGTGAGGGA-ACAGCTGTATCCCCAAGCACACGG
** *
86846231 GCGTGTGCTTGGTTGTGT-AAAACCCCTGTAGGTTAGAAACGTAAAATAAATCCAGATAATTCAA
1 GCGTGTGCTTGGCCGTGTAAAAACCCCTGTAGGTTAGAAACGGAAAATAAATCCAGATAATTCAA
* * *
86846295 CACGGGTGAGGGAACGGGTGTGTCCCCAAGCACACGG
66 CACGGGTGAGGGAACAGCTGTATCCCCAAGCACACGG
86846332 GCGTGTG
1 GCGTGTG
86846339 AGGCATAACC
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
101 26 0.27
102 53 0.56
103 16 0.17
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (102 bp):
GCGTGTGCTTGGCCGTGTAAAAACCCCTGTAGGTTAGAAACGGAAAATAAATCCAGATAATTCAA
CACGGGTGAGGGAACAGCTGTATCCCCAAGCACACGG
Found at i:86849412 original size:15 final size:15
Alignment explanation
Indices: 86849389--86849442 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
86849379 GTAAAACAAC
* *
86849389 TTAAGAATAATAATA
1 TTAATAATAATGATA
86849404 TTAATAATAATGGTGATA
1 TTAATAATAA---TGATA
86849422 TTAATAATAATGATA
1 TTAATAATAATGATA
86849437 -TAATAA
1 TTAATAA
86849443 AAATCTAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
14 6 0.18
15 14 0.41
18 14 0.41
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (15 bp):
TTAATAATAATGATA
Found at i:86849619 original size:33 final size:34
Alignment explanation
Indices: 86849579--86849670 Score: 93
Period size: 33 Copynumber: 2.7 Consensus size: 34
86849569 TTAAGGATAC
86849579 AATAATATAATAATATGT-A-AATAAGCATAAAAAG
1 AATAATATAATAATA-GTAATAATAA-CATAAAAAG
* **
86849613 AA-AATATAATTATAGTAATAATAACATAAAATT
1 AATAATATAATAATAGTAATAATAACATAAAAAG
*
86849646 AATTAATATAATAATAG-AATGATAA
1 AA-TAATATAATAATAGTAATAATAA
86849671 TGATAAATTA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
32 2 0.04
33 21 0.43
34 14 0.29
35 12 0.24
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (34 bp):
AATAATATAATAATAGTAATAATAACATAAAAAG
Found at i:86849677 original size:35 final size:34
Alignment explanation
Indices: 86849615--86849682 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
86849605 ATAAAAAGAA
*
86849615 AATATAATTATAGTAATAATAACATAAAATTAATT
1 AATATAATAATAGTAATAATAACAT-AAATTAATT
* *
86849650 AATATAATAATAG-AATGATAATGATAAATTAAT
1 AATATAATAATAGTAATAATAA-CATAAATTAAT
86849683 AAAAAATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
34 15 0.52
35 14 0.48
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.35
Consensus pattern (34 bp):
AATATAATAATAGTAATAATAACATAAATTAATT
Found at i:86849698 original size:28 final size:30
Alignment explanation
Indices: 86849646--86849703 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 30
86849636 ACATAAAATT
* *
86849646 AATTAATATAATAATAGAATGATAATGATA
1 AATTAATATAAAAATAAAATGATAATGATA
86849676 AATTAATA-AAAAATAAAAT-ATAATGATA
1 AATTAATATAAAAATAAAATGATAATGATA
86849704 GTAGTAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 9 0.35
29 9 0.35
30 8 0.31
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (30 bp):
AATTAATATAAAAATAAAATGATAATGATA
Found at i:86854074 original size:44 final size:45
Alignment explanation
Indices: 86854006--86854174 Score: 175
Period size: 44 Copynumber: 3.8 Consensus size: 45
86853996 ACCGGCTATG
* * *
86854006 GTAGATTTAATCTGATCCACTGCAACTTCAGAGGTG-TAGGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * *
86854050 GTCGCTTTAATCTGTTCCACTGCAACTTTAG-GGAGATAGGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * * *
86854094 GTTGCTTCAATATGCTCTACTGCAACTTCA-AGGAGATAAGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
* * * *
86854138 ATAACTTTAATCTGCTCTACTGTAACTTCAGA-GAGAT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGAT
86854175 GAGTTTTGCT
Statistics
Matches: 104, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
43 3 0.03
44 100 0.96
45 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (45 bp):
GTAGCTTTAATCTGCTCCACTGCAACTTCAGAGGAGATAGGATTT
Found at i:86854495 original size:44 final size:44
Alignment explanation
Indices: 86854446--86855128 Score: 348
Period size: 44 Copynumber: 15.3 Consensus size: 44
86854436 CTATTGTAAT
* * * *
86854446 TTCAGGGAGATAAAACTTGTCATTTCAACCTGCTCCACTACAAC
1 TTCAGGGAGATAAGACTTATCATTTCAATCTGCTCCACTGCAAC
* *
86854490 TTCAGGGAGATAAGGCTTAT-AGCTTT-AATCTGCTCTACTGCAAC
1 TTCAGGGAGATAAGACTTATCA--TTTCAATCTGCTCCACTGCAAC
** * * * * *
86854534 TTCAAAGAGATAAGATTTACCATCTTCGATATACTCCACTGCAAC
1 TTCAGGGAGATAAGACTTATCAT-TTCAATCTGCTCCACTGCAAC
* * * * * **
86854579 TTTAGGGAGATAAGA-TCTATAACTTCAACCTGCTCTACTATAAC
1 TTCAGGGAGATAAGACT-TATCATTTCAATCTGCTCCACTGCAAC
* * * * *
86854623 TTTAGAGAGATAAGGCTTAT-AGCTTT-AATTTGCTCTACTGCAAC
1 TTCAGGGAGATAAGACTTATCA--TTTCAATCTGCTCCACTGCAAC
* * * *
86854667 TTCAGAGAGTTAAGA-TT-TGCTATCTT-AGATCTACTCCACTACAAC
1 TTCAGGGAGATAAGACTTAT-C-AT-TTCA-ATCTGCTCCACTGCAAC
* * *
86854712 TTCAGGGAGATAAGA-TCTATAACTTCAATTTGCTCCACTGCAAC
1 TTCAGGGAGATAAGACT-TATCATTTCAATCTGCTCCACTGCAAC
* * *
86854756 TTCAGGGAGATAAGACTTAT-AGCTTT-AATCTGCTCTACCGTAAC
1 TTCAGGGAGATAAGACTTATCA--TTTCAATCTGCTCCACTGCAAC
* * *
86854800 TTCAGAGAGATAAGA-TT-TGCTATCTTCAATCTACTCCACTACAAC
1 TTCAGGGAGATAAGACTTAT-C-AT-TTCAATCTGCTCCACTGCAAC
* * *
86854845 TTC-GGAGAGATAAGACTTATAACTTCAACCTGCTCCACTGCAAC
1 TTCAGG-GAGATAAGACTTATCATTTCAATCTGCTCCACTGCAAC
* * * * * * * *
86854889 TTTAGAGAGATAAG-GTT-TGC-TAT-GATCTACTCTACTACAAC
1 TTCAGGGAGATAAGACTTAT-CATTTCAATCTGCTCCACTGCAAC
* * * *
86854930 TTCAGAGAGATAAGATCTATAATTTATAGCTTCAATTTGTTCCACTGCAAC
1 TTCAGGGAGATAAGA-CT-T-A-TCAT---TTCAATCTGCTCCACTGCAAC
* *
86854981 TTCAGGGAAATAAGA-TTTTCTATCTTCAATCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGACTTATC-AT-TTCAATCTGCTCCACTGCAAC
* * * * * * *
86855026 TTCTGGGAGACAAAACTTGTAACTTCAACCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGACTTATCATTTCAATCTGCTCCACTGCAAC
* * * *
86855070 TTTAGGGAGATAAG-GTTCGTGGC-TTT-AATCTGCTCCACTGTAAC
1 TTCAGGGAGATAAGACTT-AT--CATTTCAATCTGCTCCACTGCAAC
86855114 TTCAGGGAGATAAGA
1 TTCAGGGAGATAAGA
86855129 TTCGCCATAA
Statistics
Matches: 481, Mismatches: 111, Indels: 93
0.70 0.16 0.14
Matches are distributed among these distances:
41 26 0.05
42 4 0.01
43 15 0.03
44 264 0.55
45 131 0.27
46 7 0.01
47 6 0.01
48 1 0.00
49 1 0.00
50 1 0.00
51 25 0.05
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (44 bp):
TTCAGGGAGATAAGACTTATCATTTCAATCTGCTCCACTGCAAC
Found at i:86854559 original size:133 final size:134
Alignment explanation
Indices: 86854373--86854945 Score: 655
Period size: 133 Copynumber: 4.3 Consensus size: 134
86854363 GATCTCTAAT
* * * * * * * *
86854373 TTATAGCTTTAATCTGTTCCACTGTAATTTCAGGGA-AGCAAGATTCGCTATCTTCAG-TCTGCT
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGA-TAAGATTTGCTATCTTCAGATCTACT
* * ** * * * * * *
86854436 CTATTGTAATTTCAGGGAGATAA-AACTTGTCATTTCAACCTGCTCCACTACAACTTCAGGGAGA
65 CCACTACAACTTCAGGGAGATAAGATC-TATAACTTCAACCTGCTCCACTACAACTTCAGAGAGA
86854500 TAAGGC
129 TAAGGC
* * * *
86854506 TTATAGCTTTAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTTACCATCTTC-GATATACTC
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGATCTACTC
* * * * *
86854570 CACTGCAACTTTAGGGAGATAAGATCTATAACTTCAACCTGCTCTACTATAACTTTAGAGAGATA
66 CACTACAACTTCAGGGAGATAAGATCTATAACTTCAACCTGCTCCACTACAACTTCAGAGAGATA
86854635 AGGC
131 AGGC
* *
86854639 TTATAGCTTTAATTTGCTCTACTGCAACTTCAGAGAGTTAAGATTTGCTATCTT-AGATCTACTC
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGATCTACTC
** * *
86854703 CACTACAACTTCAGGGAGATAAGATCTATAACTTCAATTTGCTCCACTGCAACTTCAGGGAGATA
66 CACTACAACTTCAGGGAGATAAGATCTATAACTTCAACCTGCTCCACTACAACTTCAGAGAGATA
*
86854768 AGAC
131 AGGC
* *
86854772 TTATAGCTTTAATCTGCTCTACCGTAACTTCAGAGAGATAAGATTTGCTATCTTCA-ATCTACTC
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGATCTACTC
* *
86854836 CACTACAACTTC-GGAGAGATAAGA-CTTATAACTTCAACCTGCTCCACTGCAACTTTAGAGAGA
66 CACTACAACTTCAGG-GAGATAAGATC-TATAACTTCAACCTGCTCCACTACAACTTCAGAGAGA
86854899 TAAGG-
129 TAAGGC
* * * *
86854904 TT-T-GCTATGATCTACTCTACTACAACTTCAGAGAGATAAGAT
1 TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
86854946 CTATAATTTA
Statistics
Matches: 377, Mismatches: 56, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
130 33 0.09
131 1 0.00
132 6 0.02
133 333 0.88
134 4 0.01
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (134 bp):
TTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGATCTACTC
CACTACAACTTCAGGGAGATAAGATCTATAACTTCAACCTGCTCCACTACAACTTCAGAGAGATA
AGGC
Found at i:86854571 original size:89 final size:88
Alignment explanation
Indices: 86854469--86855128 Score: 443
Period size: 89 Copynumber: 7.4 Consensus size: 88
86854459 AACTTGTCAT
* * * *
86854469 TTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGCTTATAGCTTTAATCTGCTCTACTGCAAC
1 TTCAATCTACTCCACTACAACTTCAGGGAGATAAGACTTATAACTTTAATCTGCTCTACTGCAAC
* *
86854534 TTCAAAGAGATAAGATTTACCATC
66 TTCAGAGAGATAAGATTTA-TATC
* * * * * * **
86854558 TTCGATATACTCCACTGCAACTTTAGGGAGATAAGA-TCTATAACTTCAACCTGCTCTACTATAA
1 TTCAATCTACTCCACTACAACTTCAGGGAGATAAGACT-TATAACTTTAATCTGCTCTACTGCAA
* ** *
86854622 CTTTAGAGAGATAAGGCTTATAGC
65 CTTCAGAGAGATAAGATTTATATC
* * * * * * * * * * * * *
86854646 TTTAATTTGCTCTACTGCAACTTCAGAGAGTTAAGATTTGCTATC-TTAGATCTACTCCACTACA
1 TTCAATCTACTCCACTACAACTTCAGGGAGATAAGACTT-ATAACTTTA-ATCTGCTCTACTGCA
* * *
86854710 ACTTCAGGGAGATAAGATCTATAAC
64 ACTTCAGAGAGATAAGATTTATATC
* * * * * *
86854735 TTCAATTTGCTCCACTGCAACTTCAGGGAGATAAGACTTATAGCTTTAATCTGCTCTACCGTAAC
1 TTCAATCTACTCCACTACAACTTCAGGGAGATAAGACTTATAACTTTAATCTGCTCTACTGCAAC
*
86854800 TTCAGAGAGATAAGATTTGCTATC
66 TTCAGAGAGATAAGATTT-ATATC
* * *
86854824 TTCAATCTACTCCACTACAACTTC-GGAGAGATAAGACTTATAACTTCAACCTGCTCCACTGCAA
1 TTCAATCTACTCCACTACAACTTCAGG-GAGATAAGACTTATAACTTTAATCTGCTCTACTGCAA
* * *
86854888 CTTTAGAGAGATAAG-GTT-T-GC
65 CTTCAGAGAGATAAGATTTATATC
* * * * * * *
86854909 TAT-GATCTACTCTACTACAACTTCAGAGAGATAAGATCTATAATTTATAGCTTCAATTTGTTCC
1 T-TCAATCTACTCCACTACAACTTCAGGGAGATAAGA-CT-T-A--TA-A-CTTTAATCTGCTCT
* * *
86854973 ACTGCAACTTCAGGGAAATAAGATTTTCTATC
58 ACTGCAACTTCAGAGAGATAAGA-TTTATATC
* * * * * * * * *
86855005 TTCAATCTGCTCCACTGCAACTTCTGGGAGACAAAACTTGTAACTTCAACCTGCTCCACTGCAAC
1 TTCAATCTACTCCACTACAACTTCAGGGAGATAAGACTTATAACTTTAATCTGCTCTACTGCAAC
* * * ** **
86855070 TTTAGGGAGATAAGGTTCGTGGC
66 TTCAGAGAGATAAGATTTATATC
* * **
86855093 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGA
1 TTCAATCTACTCCACTACAACTTCAGGGAGATAAGA
86855129 TTCGCCATAA
Statistics
Matches: 448, Mismatches: 102, Indels: 43
0.76 0.17 0.07
Matches are distributed among these distances:
85 30 0.07
86 5 0.01
87 1 0.00
88 105 0.23
89 237 0.53
90 3 0.01
91 3 0.01
92 30 0.07
94 3 0.01
95 4 0.01
96 27 0.06
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (88 bp):
TTCAATCTACTCCACTACAACTTCAGGGAGATAAGACTTATAACTTTAATCTGCTCTACTGCAAC
TTCAGAGAGATAAGATTTATATC
Found at i:86858170 original size:27 final size:27
Alignment explanation
Indices: 86858140--86858224 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
86858130 TTGTAAAGTT
86858140 TGTTAAATATATGGTAATTGTGTGAAA
1 TGTTAAATATATGGTAATTGTGTGAAA
* **
86858167 TGTTTGAA-AT-TGAG-AGA-TGCTAAGAAA
1 TG-TTAAATATATG-GTA-ATTG-TGTGAAA
*
86858194 TGTTAAATAGATGGTAATTGTGTGAAA
1 TGTTAAATATATGGTAATTGTGTGAAA
86858221 TGTT
1 TGTT
86858225 TGAAATTGAG
Statistics
Matches: 43, Mismatches: 7, Indels: 16
0.65 0.11 0.24
Matches are distributed among these distances:
26 9 0.21
27 25 0.58
28 9 0.21
ACGTcount: A:0.36, C:0.01, G:0.25, T:0.38
Consensus pattern (27 bp):
TGTTAAATATATGGTAATTGTGTGAAA
Found at i:86858208 original size:54 final size:54
Alignment explanation
Indices: 86858140--86858247 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
86858130 TTGTAAAGTT
*
86858140 TGTTAAATATATGGTAATTGTGTGAAATGTTTGAAATTGAGAGATGCTAAGAAA
1 TGTTAAATAGATGGTAATTGTGTGAAATGTTTGAAATTGAGAGATGCTAAGAAA
86858194 TGTTAAATAGATGGTAATTGTGTGAAATGTTTGAAATTGAGAGATGCTAAGAAA
1 TGTTAAATAGATGGTAATTGTGTGAAATGTTTGAAATTGAGAGATGCTAAGAAA
86858248 ATTTGATTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.39, C:0.02, G:0.25, T:0.34
Consensus pattern (54 bp):
TGTTAAATAGATGGTAATTGTGTGAAATGTTTGAAATTGAGAGATGCTAAGAAA
Found at i:86858247 original size:27 final size:27
Alignment explanation
Indices: 86858163--86858247 Score: 79
Period size: 27 Copynumber: 3.1 Consensus size: 27
86858153 GTAATTGTGT
86858163 GAAATGTTTGAAATTGAGAGATGCTAA
1 GAAATGTTTGAAATTGAGAGATGCTAA
* **
86858190 GAAATG-TT-AAATAGATG-GTAATTG-TGT
1 GAAATGTTTGAAATTGA-GAG--A-TGCTAA
86858217 GAAATGTTTGAAATTGAGAGATGCTAA
1 GAAATGTTTGAAATTGAGAGATGCTAA
86858244 GAAA
1 GAAA
86858248 ATTTGATTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 16
0.67 0.09 0.24
Matches are distributed among these distances:
25 7 0.16
26 5 0.11
27 20 0.45
28 5 0.11
29 7 0.16
ACGTcount: A:0.41, C:0.02, G:0.26, T:0.31
Consensus pattern (27 bp):
GAAATGTTTGAAATTGAGAGATGCTAA
Found at i:86865784 original size:40 final size:40
Alignment explanation
Indices: 86865501--86865772 Score: 463
Period size: 40 Copynumber: 6.8 Consensus size: 40
86865491 GAGAATTGAG
86865501 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
86865541 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
86865581 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
86865621 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
86865661 AGTGATATATCCGGGCTACGTCCTGAAGATCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
86865701 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
86865741 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
86865773 ATCATGCTGG
Statistics
Matches: 217, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:86875646 original size:7 final size:7
Alignment explanation
Indices: 86875628--86875660 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
86875618 AACTATCTGT
86875628 TTCTTT-
1 TTCTTTG
86875634 TTCTTTG
1 TTCTTTG
86875641 TTCTTTG
1 TTCTTTG
86875648 TTCTTTG
1 TTCTTTG
86875655 TTCTTT
1 TTCTTT
86875661 TCTTTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.00, C:0.15, G:0.09, T:0.76
Consensus pattern (7 bp):
TTCTTTG
Found at i:86875651 original size:14 final size:13
Alignment explanation
Indices: 86875628--86875665 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 13
86875618 AACTATCTGT
86875628 TTCTTTTTCTTTG
1 TTCTTTTTCTTTG
86875641 TTCTTTGTTCTTTG
1 TTCTTT-TTCTTTG
86875655 TTC-TTTTCTTT
1 TTCTTTTTCTTT
86875666 TATTTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 6 0.25
13 8 0.33
14 10 0.42
ACGTcount: A:0.00, C:0.16, G:0.08, T:0.76
Consensus pattern (13 bp):
TTCTTTTTCTTTG
Found at i:86875730 original size:16 final size:16
Alignment explanation
Indices: 86875696--86875748 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
86875686 TTAATTAATT
86875696 AATA-ATTA-ATATAA
1 AATATATTATATATAA
*
86875710 TAATATATTATGTATAA
1 -AATATATTATATATAA
* *
86875727 AATATCTTATACATAA
1 AATATATTATATATAA
86875743 AATATA
1 AATATA
86875749 AGTAAATACA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 4 0.13
16 22 0.71
17 5 0.16
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (16 bp):
AATATATTATATATAA
Found at i:86878868 original size:34 final size:34
Alignment explanation
Indices: 86878795--86878877 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 34
86878785 TAAGCCCTTA
** * **
86878795 ACAGTAGCAAAATCAGTGTGGGCCTTAGCCCGCT
1 ACAGTAGCAGTATCAGTATGGGCCTTAGCCCAAT
86878829 ACAGTAGCAGTATCAGTATGGGCCTTAGCCCAAT
1 ACAGTAGCAGTATCAGTATGGGCCTTAGCCCAAT
*
86878863 TCAGTA-CAGTATCAG
1 ACAGTAGCAGTATCAG
86878878 AAATGCATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 9 0.21
34 34 0.79
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (34 bp):
ACAGTAGCAGTATCAGTATGGGCCTTAGCCCAAT
Found at i:86889765 original size:38 final size:38
Alignment explanation
Indices: 86889649--86889828 Score: 164
Period size: 40 Copynumber: 4.6 Consensus size: 38
86889639 TACTCGTTTG
* *
86889649 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGG-CTTAGCCCGATT-TAGTAACTCGCACA
* * *
86889689 AATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCG-GGCTTAGCCC-GATTTAGTAACTCGCACA
* *
86889729 AATGCCTTCGGGCTTAGCCCGAATTAGTATCTCGCACA
1 AATGCCTTCGGGCTTAGCCCGATTTAGTAACTCGCACA
* * * * * *
86889767 AATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACA
1 AATGCCTTCGG-GCTTAG-CCCGATTTAGTAAC-TCGCACA
86889808 AA-GCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGG-CTTAGCCCG
86889829 GACATCATTC
Statistics
Matches: 114, Mismatches: 20, Indels: 13
0.78 0.14 0.09
Matches are distributed among these distances:
38 26 0.23
39 16 0.14
40 60 0.53
41 12 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (38 bp):
AATGCCTTCGGGCTTAGCCCGATTTAGTAACTCGCACA
Found at i:86889773 original size:78 final size:80
Alignment explanation
Indices: 86889649--86889828 Score: 215
Period size: 78 Copynumber: 2.3 Consensus size: 80
86889639 TACTCGTTTG
* **
86889649 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCG-GATCTTAACCCGGA
* *
86889713 TTTAGTAAC-TCGCACC
65 TATAGTAACTTAGCA-C
* **
86889729 AATGCCTTCGGG-CTTAGCCCGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
86889792 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
86889807 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
86889829 GACATCATTC
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
77 2 0.02
78 50 0.58
79 22 0.26
80 12 0.14
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:86897899 original size:38 final size:40
Alignment explanation
Indices: 86897785--86897964 Score: 208
Period size: 40 Copynumber: 4.5 Consensus size: 40
86897775 TACTCGTTCG
*
86897785 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACA
* *
86897825 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACA
* *
86897865 AATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACA
* * * * *
86897903 AATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACA
86897944 AA-GCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
86897965 AACATCATTC
Statistics
Matches: 120, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 34 0.28
39 2 0.02
40 71 0.59
41 13 0.11
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACA
Found at i:86897950 original size:78 final size:80
Alignment explanation
Indices: 86897788--86897964 Score: 202
Period size: 78 Copynumber: 2.2 Consensus size: 80
86897778 TCGTTCGAAT
* * *
86897788 GCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATAT
* *
86897852 AGTAACTCGCACCAAT
65 AGTAACTAGCACCAAA
* **
86897868 GCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATAT
* *
86897930 GGTCACTTAGCA-CAAA
65 AGTAAC-TAGCACCAAA
86897946 GCCTTCGGGACTTAGCCCG
1 GCCTTCGGGACTTAGCCCG
86897965 AACATCATTC
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
77 3 0.04
78 55 0.67
79 9 0.11
80 15 0.18
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
GTAACTAGCACCAAA
Found at i:86901845 original size:28 final size:27
Alignment explanation
Indices: 86901811--86901865 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 27
86901801 ATAAAATAAG
86901811 TTAATTTTGAATATAGTTAGATCAAGAA
1 TTAATTTTGAATATA-TTAGATCAAGAA
*
86901839 TTAATTTTGAATATATTTGATCAAGAA
1 TTAATTTTGAATATATTAGATCAAGAA
86901866 AGGAGAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 11 0.42
28 15 0.58
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.42
Consensus pattern (27 bp):
TTAATTTTGAATATATTAGATCAAGAA
Found at i:86902152 original size:42 final size:42
Alignment explanation
Indices: 86902040--86902152 Score: 142
Period size: 40 Copynumber: 2.7 Consensus size: 42
86902030 TTGACGACAA
* *
86902040 TTCGGCTATGTATGGCACTTAGTGTGC--GATTCGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGAGATTCAAAATAGC
* * *
86902080 TTTGGCTATTTATGGCACTTAGTGTACGAGATT-AAAATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGAGATTCAAAATAGC
*
86902121 TTCGGCTATGTATTGGCAGTTAGTGTGCGAGA
1 TTCGGCTATGTA-TGGCACTTAGTGTGCGAGA
86902153 ATTCGAGTAT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
40 24 0.39
41 16 0.26
42 21 0.34
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (42 bp):
TTCGGCTATGTATGGCACTTAGTGTGCGAGATTCAAAATAGC
Found at i:86905147 original size:27 final size:27
Alignment explanation
Indices: 86905117--86905208 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
86905107 ATTGCCAAAG
* *
86905117 TACCCTCGATTTATAGACTCACTGTTT
1 TACCCTCGATTTACAGAATCACTGTTT
* *
86905144 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATCACTGTTT
* * ** *
86905171 TACCCTCAATTTACAAAATTTCAGTTT
1 TACCCTCGATTTACAGAATCACTGTTT
86905198 TACCCTCGATT
1 TACCCTCGATT
86905209 GTGAAATTAC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATCACTGTTT
Found at i:86905230 original size:27 final size:27
Alignment explanation
Indices: 86905200--86905363 Score: 120
Period size: 27 Copynumber: 6.1 Consensus size: 27
86905190 TTCAGTTTTA
* * **
86905200 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* **
86905227 CCCTATAGGGTAAAATTACCAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
*
86905254 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* * * * * *
86905281 CACTGGTTTGTGAAATTATCGAAATA-
1 CCCTAGATTGTAAAATTACCAAAATAC
*
86905307 CCCTCA-ATTTATAAAATTACCAAAATAC
1 CCCT-AGA-TTGTAAAATTACCAAAATAC
*
86905335 CCCTA-ATT-TACAAAATTACAAAAATAC
1 CCCTAGATTGT--AAAATTACCAAAATAC
86905362 CC
1 CC
86905364 TTGACTTTCT
Statistics
Matches: 108, Mismatches: 24, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.01
26 5 0.05
27 98 0.91
28 4 0.04
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
CCCTAGATTGTAAAATTACCAAAATAC
Found at i:86905308 original size:81 final size:81
Alignment explanation
Indices: 86905207--86905362 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
86905197 TTACCCTCGA
* * * **
86905207 TTGTGAAATTACTGAAATACCC-CTATAGGGTAAAATTACCAAAATACCCCTAGTTTGTAAAATT
1 TTGTGAAATTACTGAAATACCCTCAAT-GGATAAAATTACCAAAATACCCCTAATTTACAAAATT
*
86905271 ACCAAAATACCACTGGT
65 ACAAAAATACCACTGGT
**
86905288 TTGTGAAATTA-TCGAAATACCCTCAATTTATAAAATTACCAAAATACCCCTAATTTACAAAATT
1 TTGTGAAATTACT-GAAATACCCTCAATGGATAAAATTACCAAAATACCCCTAATTTACAAAATT
86905352 ACAAAAATACC
65 ACAAAAATACC
86905363 CTTGACTTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
80 1 0.02
81 61 0.94
82 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (81 bp):
TTGTGAAATTACTGAAATACCCTCAATGGATAAAATTACCAAAATACCCCTAATTTACAAAATTA
CAAAAATACCACTGGT
Done.