Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 264 of 343
Found at i:87214853 original size:20 final size:20
Alignment explanation
Indices: 87214830--87214867 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87214820 TATTCATAAC
* *
87214830 ATTTTAGAATTTTTCATTAA
1 ATTTTACAACTTTTCATTAA
87214850 ATTTTACAACTTTTCATT
1 ATTTTACAACTTTTCATT
87214868 TTAGTCCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.11, G:0.03, T:0.55
Consensus pattern (20 bp):
ATTTTACAACTTTTCATTAA
Found at i:87220690 original size:35 final size:35
Alignment explanation
Indices: 87220641--87220861 Score: 241
Period size: 35 Copynumber: 6.2 Consensus size: 35
87220631 AAAAAAATTA
* *
87220641 CCTTAGACGTGTCTATCCCAACTTTTTTAAGGTTG
1 CCTTAGAAGGGTCTATCCCAACTTTTTTAAGGTTG
87220676 CCTTAGAAGGGTCTATCCCAACCTTTTTTAAAGGTTG
1 CCTTAGAAGGGTCTATCCCAA-CTTTTTT-AAGGTTG
* * *
87220713 CCTTAGACAAGGTCTATCTCAACTTTTTTAATGTTG
1 CCTTAGA-AGGGTCTATCCCAACTTTTTTAAGGTTG
*
87220749 CCTTACG-A--GTCTATCTCAACTTTTTTTAAAGGTTG
1 CCTTA-GAAGGGTCTATCCCAAC-TTTTTT-AAGGTTG
* * *
87220784 CCTTAGACATGGTCTATCCCAACCTTTTTAAAGTTG
1 CCTTAGA-AGGGTCTATCCCAACTTTTTTAAGGTTG
* * * *
87220820 TCTTAGACGGGTCTTTCCCAACCTTTTTAAGGTTG
1 CCTTAGAAGGGTCTATCCCAACTTTTTTAAGGTTG
87220855 CCTTAGA
1 CCTTAGA
87220862 TGAGTTTAAA
Statistics
Matches: 161, Mismatches: 15, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
33 12 0.07
34 7 0.04
35 61 0.38
36 31 0.19
37 27 0.17
38 23 0.14
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (35 bp):
CCTTAGAAGGGTCTATCCCAACTTTTTTAAGGTTG
Found at i:87220790 original size:71 final size:70
Alignment explanation
Indices: 87220651--87220861 Score: 255
Period size: 71 Copynumber: 2.9 Consensus size: 70
87220641 CCTTAGACGT
*
87220651 GTCTATCCCAACTTTTTTAAGGTTGCCTTA-GAAGGGTCTATCCCAACCTTTTTTAAAGGTTGCC
1 GTCTATCCCAACTTTTTTAAAGTTGCCTTACG-A--GTCTATCCCAA-CTTTTTTAAAGGTTGCC
87220715 TTAGACAAG
62 TTAGACAAG
* * *
87220724 GTCTATCTCAACTTTTTTAATGTTGCCTTACGAGTCTATCTCAACTTTTTTTAAAGGTTGCCTTA
1 GTCTATCCCAACTTTTTTAAAGTTGCCTTACGAGTCTATCCCAAC-TTTTTTAAAGGTTGCCTTA
*
87220789 GACATG
65 GACAAG
* * * * *
87220795 GTCTATCCCAACCTTTTTAAAGTTGTCTTAGACGGGTCTTTCCCAACCTTTTT-AAGGTTGCCTT
1 GTCTATCCCAACTTTTTTAAAGTTGCCTT--ACGAGTCTATCCCAACTTTTTTAAAGGTTGCCTT
87220859 AGA
64 AGA
87220862 TGAGTTTAAA
Statistics
Matches: 122, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
70 1 0.01
71 73 0.60
72 5 0.04
73 42 0.34
74 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (70 bp):
GTCTATCCCAACTTTTTTAAAGTTGCCTTACGAGTCTATCCCAACTTTTTTAAAGGTTGCCTTAG
ACAAG
Found at i:87221588 original size:13 final size:13
Alignment explanation
Indices: 87221570--87221596 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
87221560 TATGTGAATC
87221570 TCTATGATACTTT
1 TCTATGATACTTT
87221583 TCTATGATACTTT
1 TCTATGATACTTT
87221596 T
1 T
87221597 ACGGAAGCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (13 bp):
TCTATGATACTTT
Found at i:87225826 original size:30 final size:30
Alignment explanation
Indices: 87225792--87225870 Score: 158
Period size: 30 Copynumber: 2.6 Consensus size: 30
87225782 TCTGAGCATT
87225792 GGGGCAAAATGGTCATTTTGTCAAGGTCTA
1 GGGGCAAAATGGTCATTTTGTCAAGGTCTA
87225822 GGGGCAAAATGGTCATTTTGTCAAGGTCTA
1 GGGGCAAAATGGTCATTTTGTCAAGGTCTA
87225852 GGGGCAAAATGGTCATTTT
1 GGGGCAAAATGGTCATTTT
87225871 ACCAAATGCG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.30
Consensus pattern (30 bp):
GGGGCAAAATGGTCATTTTGTCAAGGTCTA
Found at i:87226370 original size:46 final size:47
Alignment explanation
Indices: 87226220--87226580 Score: 205
Period size: 46 Copynumber: 7.7 Consensus size: 47
87226210 TGTGTGAGCT
* * * *
87226220 AGTGTAAGA-CATGTTTGGGACATGCATCGACCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AGCC
* * * * * *
87226266 AGTGTATGACCATGTTTGGGACATGGCATCGGCATTGAGACG--AGTTCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAG--CC
87226314 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
* * * *
87226360 AGAGTGAGA-CATGTTTGGGACATGCATCGG-CTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
* * * * *
87226404 AGTGTAAGACCATATCTGGGACATGGCATCGGCATGGACATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGT-A-AGCC
* * * **
87226454 AGTGTAAGACCATGTCTGGGACATGGCGTCGTCCTC-A-ATTTCGATAGTT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGT--A-AGCC
* * *
87226503 AGTGTAA-AACATGTCTGGGACATGGCATC-GACTTGATGAATG--AGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGA-G-ATGTAAGCC
*
87226549 AGTGTAAGACTATGTCTGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGG
87226581 TATTATACCC
Statistics
Matches: 248, Mismatches: 45, Indels: 42
0.74 0.13 0.13
Matches are distributed among these distances:
44 9 0.04
45 14 0.06
46 82 0.33
47 50 0.20
48 45 0.18
49 14 0.06
50 32 0.13
51 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:87227289 original size:25 final size:25
Alignment explanation
Indices: 87227261--87227309 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
87227251 TTATATTGTC
87227261 CACACGGGT-AGACACATGGGCGTGA
1 CACAC-GGTCAGACACATGGGCGTGA
* *
87227286 CACACGGTCAGCCCCATGGGCGTG
1 CACACGGTCAGACACATGGGCGTG
87227310 TAGTTCAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.22, C:0.31, G:0.35, T:0.12
Consensus pattern (25 bp):
CACACGGTCAGACACATGGGCGTGA
Found at i:87227572 original size:42 final size:42
Alignment explanation
Indices: 87227509--87227618 Score: 168
Period size: 42 Copynumber: 2.6 Consensus size: 42
87227499 ACAGGCTAGA
* * *
87227509 ACACGGGCATGTCG-TGGCCGTGTGAGGGACACGGGCCATTG
1 ACACGGGCGTGTGGATGGCCGTGTGAAGGACACGGGCCATTG
*
87227550 ACACGGGCGTGTGTATGGCCGTGTGAAGGACACGGGCCATTG
1 ACACGGGCGTGTGGATGGCCGTGTGAAGGACACGGGCCATTG
*
87227592 ACACGGGGGTGTGGATGGCCGTGTGAA
1 ACACGGGCGTGTGGATGGCCGTGTGAA
87227619 AACCCTTGTA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 11 0.18
42 51 0.82
ACGTcount: A:0.18, C:0.21, G:0.43, T:0.18
Consensus pattern (42 bp):
ACACGGGCGTGTGGATGGCCGTGTGAAGGACACGGGCCATTG
Found at i:87229370 original size:60 final size:59
Alignment explanation
Indices: 87229246--87229382 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 59
87229236 CAGTGTTAAC
* *
87229246 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCTTTACAGTATCAGAGTATTT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTTTACAG-ATCAGAGTATAT
* * *
87229307 TGGGCCTAGCCCATATCAGTATCAATCTGGGTCGTAGCCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCT-TTACAGA-TCAGAG-TATAT
* *
87229367 TGGGCCTTGGCCATAT
1 TGGGCCTAGCCCATAT
87229383 TAACACAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 51 0.77
61 11 0.17
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTTTACAGATCAGAGTATAT
Found at i:87229429 original size:19 final size:20
Alignment explanation
Indices: 87229387--87229429 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
87229377 CCATATTAAC
** *
87229387 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
87229407 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
87229426 ACAG
1 ACAG
87229430 CCTCATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:87231765 original size:3 final size:3
Alignment explanation
Indices: 87231757--87231782 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
87231747 CATATTTAAT
87231757 TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TA
87231783 ATAATAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
TAC
Found at i:87232371 original size:21 final size:21
Alignment explanation
Indices: 87232347--87232391 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
87232337 TCTCTCAACA
87232347 ACAC-AACTGTGTCTCTTAGAC
1 ACACGAAC-GTGTCTCTTAGAC
**
87232368 ACACGGGCGTGTCTCTTAGAC
1 ACACGAACGTGTCTCTTAGAC
87232389 ACA
1 ACA
87232392 TGGCCATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (21 bp):
ACACGAACGTGTCTCTTAGAC
Found at i:87232847 original size:22 final size:22
Alignment explanation
Indices: 87232819--87232864 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
87232809 AAACTAAATA
87232819 TGAACTTGTCTGATTCTATTTC
1 TGAACTTGTCTGATTCTATTTC
87232841 TGAACTTGTCTGATTCTATTTC
1 TGAACTTGTCTGATTCTATTTC
87232863 TG
1 TG
87232865 TTAAACTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.50
Consensus pattern (22 bp):
TGAACTTGTCTGATTCTATTTC
Found at i:87244651 original size:33 final size:33
Alignment explanation
Indices: 87244609--87244675 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
87244599 CATACCGAAA
*
87244609 TCACATATCGATGCCAACGTATTAAACGTGGTC
1 TCACATATCGACGCCAACGTATTAAACGTGGTC
87244642 TCACATATCGACGCCAACGTATTAAACGTGGTC
1 TCACATATCGACGCCAACGTATTAAACGTGGTC
87244675 T
1 T
87244676 TACTCACACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (33 bp):
TCACATATCGACGCCAACGTATTAAACGTGGTC
Found at i:87248014 original size:5 final size:5
Alignment explanation
Indices: 87248004--87248029 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
87247994 TCAAAATCAG
87248004 CTTTT CTTTT CTTTT CTTTT CTTTT C
1 CTTTT CTTTT CTTTT CTTTT CTTTT C
87248030 GTATAACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
CTTTT
Found at i:87248708 original size:26 final size:26
Alignment explanation
Indices: 87248679--87248734 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
87248669 TGATACAAAT
87248679 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87248705 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87248731 TGAT
1 TGAT
87248735 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87250301 original size:22 final size:22
Alignment explanation
Indices: 87250274--87250336 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
87250264 CATGTTTGAC
87250274 TGTTGTTATTTGCTGCATGCCA
1 TGTTGTTATTTGCTGCATGCCA
*
87250296 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATTTGCTGCATGCCA
* * *
87250318 TGTTATTATCTGATGCATG
1 TGTTGTTATTTGCTGCATG
87250337 TGATTGGGAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.17, C:0.16, G:0.21, T:0.46
Consensus pattern (22 bp):
TGTTGTTATTTGCTGCATGCCA
Found at i:87255771 original size:26 final size:26
Alignment explanation
Indices: 87255733--87255788 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
87255723 TGATACAAAT
*
87255733 TGATAATGTGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87255759 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87255785 TGAT
1 TGAT
87255789 GGGAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87257326 original size:26 final size:25
Alignment explanation
Indices: 87257274--87257326 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
87257264 TTTACAGTTT
87257274 TACCCCTAGTAGATAAATTACCGAAA
1 TACCCCTAG-AGATAAATTACCGAAA
*
87257300 TACCCCTAG-GATTAAATTGACCTAAA
1 TACCCCTAGAGA-TAAATT-ACCGAAA
87257326 T
1 T
87257327 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 6 0.25
26 16 0.67
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGATAAATTACCGAAA
Found at i:87258789 original size:9 final size:9
Alignment explanation
Indices: 87258773--87258805 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
87258763 ATTATTCCGT
87258773 AAATAAATC
1 AAATAAATC
*
87258782 ATATAAATC
1 AAATAAATC
87258791 AAATAAAT-
1 AAATAAATC
87258799 AAATAAA
1 AAATAAA
87258806 AAACATATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (9 bp):
AAATAAATC
Found at i:87260019 original size:29 final size:29
Alignment explanation
Indices: 87259977--87260036 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
87259967 ATACACACAC
87259977 AGTAAGCTATCACAGCTTAGTAAGTCATA
1 AGTAAGCTATCACAGCTTAGTAAGTCATA
87260006 AGTAAGCTATCACAGCTTAGTAAGTCATA
1 AGTAAGCTATCACAGCTTAGTAAGTCATA
87260035 AG
1 AG
87260037 CAAATAAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (29 bp):
AGTAAGCTATCACAGCTTAGTAAGTCATA
Found at i:87260647 original size:56 final size:56
Alignment explanation
Indices: 87260596--87260898 Score: 435
Period size: 56 Copynumber: 5.4 Consensus size: 56
87260586 CTACTCATAA
* * * *
87260596 ACACATAACGGAATTATATATCAATGCCAACGTATTAAACGTGGTCTTACTCGCAC
1 ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
* *
87260652 ACACATATCGAAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACAC
1 ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
*
87260708 ACACATATCGGAATCACATATCGATGCCAACGTATGAAACGTGGTCTTACTCGCAC
1 ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
** * * *
87260764 ACACATATTAGAATCACATATTGATGCCAACGTATTAAACGTGGCCTTACTCGCAA
1 ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
* * * * *
87260820 ACACATATCTGTATCACATGTCGATGCCAACTTATTAAATGTGGTCTTACTCGCAC
1 ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
**
87260876 ACACATATCAAAATCACATATCG
1 ACACATATCGGAATCACATATCG
87260899 GTGCTAAAAA
Statistics
Matches: 219, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 219 1.00
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (56 bp):
ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
Found at i:87262935 original size:24 final size:23
Alignment explanation
Indices: 87262871--87262939 Score: 63
Period size: 24 Copynumber: 3.0 Consensus size: 23
87262861 GAATTTAAAG
* *
87262871 GATATATAATGCTCTCCTTTAAAT
1 GATAAATAATGCTCT-CTTTAAGT
*
87262895 GATGTAA-AA-GCTC-CTTTAAGT
1 GAT-AAATAATGCTCTCTTTAAGT
87262916 GATAAATAATGCTCTTCTTTAAGT
1 GATAAATAATGCTC-TCTTTAAGT
87262940 AATGTAACAG
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
20 2 0.06
21 12 0.33
22 4 0.11
23 4 0.11
24 13 0.36
25 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.39
Consensus pattern (23 bp):
GATAAATAATGCTCTCTTTAAGT
Found at i:87263250 original size:40 final size:40
Alignment explanation
Indices: 87263206--87263305 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
87263196 ATGTAATAAA
* *
87263206 AATAAAGTCCAATAGATCAAAAATTAACTAAGATGAGTTT
1 AATAAAGTCCAACAAATCAAAAATTAACTAAGATGAGTTT
* * * * *
87263246 AATAAAATCTAGCAAATTAAGAATTAACTAAGATGAGTTT
1 AATAAAGTCCAACAAATCAAAAATTAACTAAGATGAGTTT
* *
87263286 AATAAAGTCCAGCAACTCAA
1 AATAAAGTCCAACAAATCAA
87263306 GTATTAAACT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (40 bp):
AATAAAGTCCAACAAATCAAAAATTAACTAAGATGAGTTT
Found at i:87263312 original size:40 final size:40
Alignment explanation
Indices: 87263221--87263317 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
87263211 AGTCCAATAG
* *
87263221 ATCAAAAATTAACTAAGATGAGTTTAATAAAATCTAGCAA
1 ATCAAGAATTAACTAAGATGAGTTTAATAAAATCCAGCAA
* *
87263261 ATTAAGAATTAACTAAGATGAGTTTAATAAAGTCCAGCAA
1 ATCAAGAATTAACTAAGATGAGTTTAATAAAATCCAGCAA
* *
87263301 CTCAAGTATTAAACTAA
1 ATCAAGAATT-AACTAA
87263318 AATTATAAGC
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 43 0.88
41 6 0.12
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.28
Consensus pattern (40 bp):
ATCAAGAATTAACTAAGATGAGTTTAATAAAATCCAGCAA
Found at i:87265057 original size:36 final size:36
Alignment explanation
Indices: 87265011--87265101 Score: 100
Period size: 36 Copynumber: 2.5 Consensus size: 36
87265001 TCAATCTCAC
87265011 TCTTCTTTTCAATTTTATTTTCTTTC-TCA-CAATCTTTT
1 TCTT-TTTTCAATTTTATTTTCTTTCAT-ATC--TCTTTT
87265049 T-TTTTTTC-ATTTTATTTTTCTTTCATATCTCTTTT
1 TCTTTTTTCAATTTTA-TTTTCTTTCATATCTCTTTT
*
87265084 TCTTCTTTCAATTTTATT
1 TCTTTTTTCAATTTTATT
87265102 ATAAGATGAA
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
35 13 0.28
36 23 0.49
37 10 0.21
38 1 0.02
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.68
Consensus pattern (36 bp):
TCTTTTTTCAATTTTATTTTCTTTCATATCTCTTTT
Found at i:87267292 original size:40 final size:40
Alignment explanation
Indices: 87267237--87267348 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 40
87267227 ATGTAATAAA
87267237 AATAAAGT-CATGCAAATCAATAATTAACTAAGATGAGTTT
1 AATAAAGTCCA-GCAAATCAATAATTAACTAAGATGAGTTT
* *
87267277 AATAAAGTCCAGCAAATCAAGAATTAACTAAGATTAGTTT
1 AATAAAGTCCAGCAAATCAATAATTAACTAAGATGAGTTT
* * * *
87267317 AATAAAATCCAACAACTCAATTATTAAACTAA
1 AATAAAGTCCAGCAAATCAATAATT-AACTAA
87267349 AATTATAAGC
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
40 55 0.87
41 8 0.13
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.28
Consensus pattern (40 bp):
AATAAAGTCCAGCAAATCAATAATTAACTAAGATGAGTTT
Found at i:87275234 original size:40 final size:40
Alignment explanation
Indices: 87275190--87275374 Score: 257
Period size: 40 Copynumber: 4.6 Consensus size: 40
87275180 TTTGATGTGT
* * *
87275190 GTATCCAGGCTTAAAGACCCGCAGGCT-TCGTGCTGGAATA
1 GTATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTGGAATA
87275230 GTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAA-A
1 GTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAATA
* * * *
87275269 TGTATCCGGGTTTAAAGACCTGCAGGCTATATGTTGGAGTT
1 -GTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAATA
* *
87275310 GTATCCGGGTTTAAAGACCCGCAGGCTATATGATGGAATT
1 GTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAATA
87275350 GTATCCGGGTTTAAAGACCCGCAGG
1 GTATCCGGGTTTAAAGACCCGCAGG
87275375 TTTCGTACTG
Statistics
Matches: 132, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 130 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
GTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAATA
Found at i:87275322 original size:80 final size:80
Alignment explanation
Indices: 87275189--87275415 Score: 278
Period size: 80 Copynumber: 2.9 Consensus size: 80
87275179 ATTTGATGTG
* * *
87275189 TGTATCCAGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATAGTATCCGGGTTTAAAGACCCGCAG
1 TGTATCCGGGTTTAAAGACCCGCAGGCTTCATGCTGGAATAGTATCCGGGTTTAAAGACCCGCAG
*
87275254 GCTATATGCTGGAAA
66 GCTATATGATGGAAA
* * * *
87275269 TGTATCCGGGTTTAAAGACCTGCAGGCTAT-ATGTTGGAGTTGTATCCGGGTTTAAAGACCCGCA
1 TGTATCCGGGTTTAAAGACCCGCAGGCT-TCATGCTGGAATAGTATCCGGGTTTAAAGACCCGCA
*
87275333 GGCTATATGATGGAAT
65 GGCTATATGATGGAAA
* * * * * * * *
87275349 TGTATCCGGGTTTAAAGACCCGCAGGTTTCGTACTGGAATGGAATCC-GGATTAAAGATCCGTAG
1 TGTATCCGGGTTTAAAGACCCGCAGGCTTCATGCTGGAATAGTATCCGGGTTTAAAGACCCGCAG
87275413 GCT
66 GCT
87275416 CATGTTAGAA
Statistics
Matches: 125, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
79 18 0.14
80 106 0.85
81 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (80 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTTCATGCTGGAATAGTATCCGGGTTTAAAGACCCGCAG
GCTATATGATGGAAA
Found at i:87275387 original size:40 final size:40
Alignment explanation
Indices: 87275189--87275415 Score: 223
Period size: 40 Copynumber: 5.7 Consensus size: 40
87275179 ATTTGATGTG
* * * *
87275189 TGTATCCAGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTTTGTACTGGAAT
* * * * *
87275229 AGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAA
1 TGTATCCGGGTTTAAAGACCCGCAGGCTTTGTACTGGAAT
* *
87275269 TGTATCCGGGTTTAAAGACCTGCAGGCTATATGT--TGGAGT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT-T-TGTACTGGAAT
87275309 TGTATCCGGGTTTAAAGACCCGCAGGCTATATG-A-TGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT-T-TGTACTGGAAT
87275349 TGTATCCGGGTTTAAAGACCCGCAGG-TTTCGTACTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTTT-GTACTGGAAT
* * * * *
87275389 GGAATCC-GGATTAAAGATCCGTAGGCT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT
87275416 CATGTTAGAA
Statistics
Matches: 160, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
37 1 0.01
38 2 0.01
39 17 0.11
40 138 0.86
42 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (40 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTTTGTACTGGAAT
Found at i:87276416 original size:27 final size:26
Alignment explanation
Indices: 87276393--87276465 Score: 101
Period size: 27 Copynumber: 2.8 Consensus size: 26
87276383 CTACAGGTGC
*
87276393 ATTTTGGTAATTTTACAAACCAGGGT
1 ATTTCGGTAATTTTACAAACCAGGGT
* *
87276419 ATTTCCGTAATTTTACAAATCAAGGGT
1 ATTTCGGTAATTTTACAAA-CCAGGGT
*
87276446 ATTTCGATAATTTTACAAAC
1 ATTTCGGTAATTTTACAAAC
87276466 TGAGGTCTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 18 0.44
27 23 0.56
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (26 bp):
ATTTCGGTAATTTTACAAACCAGGGT
Found at i:87279827 original size:27 final size:27
Alignment explanation
Indices: 87279797--87279858 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
87279787 CAAAACAATC
* * * *
87279797 ATTTTACCCCACAAGTGCATTTTGGTA
1 ATTTTACACCACAAGGGCAATTTGATA
* *
87279824 ATTTTACACTACAAGGGTAATTTGATA
1 ATTTTACACCACAAGGGCAATTTGATA
87279851 ATTTTACA
1 ATTTTACA
87279859 AACTAGGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (27 bp):
ATTTTACACCACAAGGGCAATTTGATA
Found at i:87279878 original size:26 final size:26
Alignment explanation
Indices: 87279815--87279920 Score: 124
Period size: 27 Copynumber: 4.0 Consensus size: 26
87279805 CCACAAGTGC
* *
87279815 ATTTTGGTAATTTTACACTACAAGGGT
1 ATTTTGGTAATTTTACA-AACTAGGGT
* *
87279842 AATTTGATAATTTTACAAACTAGGGT
1 ATTTTGGTAATTTTACAAACTAGGGT
*
87279868 ATTTTAGTAATTTTACAAA-TCAGGAGT
1 ATTTTGGTAATTTTACAAACT-AGG-GT
*
87279895 ATTTTGGTAATTTGACAAACTAGGGT
1 ATTTTGGTAATTTTACAAACTAGGGT
87279921 CTTAACGACC
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
25 1 0.01
26 28 0.42
27 37 0.55
28 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.40
Consensus pattern (26 bp):
ATTTTGGTAATTTTACAAACTAGGGT
Found at i:87279878 original size:53 final size:53
Alignment explanation
Indices: 87279815--87279920 Score: 135
Period size: 53 Copynumber: 2.0 Consensus size: 53
87279805 CCACAAGTGC
* * *
87279815 ATTTTGGTAATTTTAC-ACTACAAGG-GTAATTTGATAATTTTACAAACTAGGGT
1 ATTTTAGTAATTTTACAAAT-C-AGGAGTAATTTGATAATTTGACAAACTAGGGT
* *
87279868 ATTTTAGTAATTTTACAAATCAGGAGTATTTTGGTAATTTGACAAACTAGGGT
1 ATTTTAGTAATTTTACAAATCAGGAGTAATTTGATAATTTGACAAACTAGGGT
87279921 CTTAACGACC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
52 3 0.07
53 41 0.89
54 2 0.04
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.40
Consensus pattern (53 bp):
ATTTTAGTAATTTTACAAATCAGGAGTAATTTGATAATTTGACAAACTAGGGT
Found at i:87291845 original size:220 final size:215
Alignment explanation
Indices: 87291426--87291862 Score: 666
Period size: 212 Copynumber: 2.0 Consensus size: 215
87291416 AAGTGTTGAA
* *
87291426 ATTTGATTGGATGATGGAATAAATGGACTAAAATGAAAAAAAAAGAAAGGAAAAGTGTAGATTTT
1 ATTTGATTGGATGATGGAATAAATGGACTAAAAT--AAAAAAAAGAAAGGAAAAGCGTAGAATTT
*
87291491 TCTAAATAATTGGAAGTTTGAAGGCATCAGCTTGGGGCAACAAAAATAAAAGGGAAATAAAGGAA
64 TCTAAATAATTGGAAGGTTGAAGGCATCAGCTTGGGGCAACAAAAATAAAAGGGAAATAAAGGAA
* * *
87291556 AGAAAAAAGAAAAAGGTAATGACTAGGAGTGTAATTATACCAAGAAAATGTCATGAATCAAGAAT
129 AGAAAAAAGAAAAAGGGAAGGACTAGGAGTGTAATTATACCAAGAAAATGTCATGAATCAAAAAT
87291621 GACA-TGTAAAGAAAGTCAAGG
194 GACATTGTAAAGAAAGTCAAGG
*
87291642 ATTTGATTGGATGATGGAATAAATGGACTAAAAT-TAAAAAA-AAAGGAAAAGCGTAGAATTTTC
1 ATTTGATTGGATGATGGAATAAATGGACTAAAATAAAAAAAAGAAAGGAAAAGCGTAGAATTTTC
*
87291705 TAAATAATTGGAAGGTTGAAGGCATCAGCTTTGGGCAAC-AAAATAAAAGGGAAATAAAGGAAAG
66 TAAATAATTGGAAGGTTGAAGGCATCAGCTTGGGGCAACAAAAATAAAAGGGAAATAAA-G---G
87291769 AAAAAAGAAAAAAAGAAAAAAGGGAAGGACTAGGAGTGTAATTATACCAAGAAAATGTCATGAAT
127 ---AAAG-AAAAAAG-AAAAAGGGAAGGACTAGGAGTGTAATTATACCAAGAAAATGTCATGAAT
*
87291834 CAAAAATGACATTGTAGAGAAAGTCAAGG
187 CAAAAATGACATTGTAAAGAAAGTCAAGG
87291863 GCAAAATAGT
Statistics
Matches: 202, Mismatches: 9, Indels: 15
0.89 0.04 0.07
Matches are distributed among these distances:
211 19 0.09
212 58 0.29
213 6 0.03
215 1 0.00
216 34 0.17
218 4 0.02
219 7 0.03
220 57 0.28
221 16 0.08
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.21
Consensus pattern (215 bp):
ATTTGATTGGATGATGGAATAAATGGACTAAAATAAAAAAAAGAAAGGAAAAGCGTAGAATTTTC
TAAATAATTGGAAGGTTGAAGGCATCAGCTTGGGGCAACAAAAATAAAAGGGAAATAAAGGAAAG
AAAAAAGAAAAAGGGAAGGACTAGGAGTGTAATTATACCAAGAAAATGTCATGAATCAAAAATGA
CATTGTAAAGAAAGTCAAGG
Found at i:87292574 original size:12 final size:12
Alignment explanation
Indices: 87292554--87292585 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
87292544 AATATTTTTG
*
87292554 TTATGTACATTT
1 TTATATACATTT
87292566 TTATATACATTT
1 TTATATACATTT
87292578 TTATATAC
1 TTATATAC
87292586 TTTCTGGTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.56
Consensus pattern (12 bp):
TTATATACATTT
Found at i:87292777 original size:62 final size:61
Alignment explanation
Indices: 87292699--87292862 Score: 211
Period size: 62 Copynumber: 2.6 Consensus size: 61
87292689 AGGCACATAG
* *
87292699 GCTAGGGACAGAGGCGTGTGTCTAGGTCGTTTAACTCATTGTTTGTATTTCTGGCCACACGA
1 GCTAGGGACAG-GGCGTGTGTCTAGGTCGTGTAACTCACTGTTTGTATTTCTGGCCACACGA
** * * *
87292761 GCTAGGGACACGGGCGTGTGTCTAGAACGTGTAACTCACTGTTTGTATTTCTGGTCACATGG
1 GCTAGGGACA-GGGCGTGTGTCTAGGTCGTGTAACTCACTGTTTGTATTTCTGGCCACACGA
* * *
87292823 GCTAGGGACATGGACGTGTGTCCAGGTTGTGTAACTCACT
1 GCTAGGGACA-GGGCGTGTGTCTAGGTCGTGTAACTCACT
87292863 ATTTTGGATT
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
62 87 0.99
63 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (61 bp):
GCTAGGGACAGGGCGTGTGTCTAGGTCGTGTAACTCACTGTTTGTATTTCTGGCCACACGA
Found at i:87311337 original size:35 final size:35
Alignment explanation
Indices: 87311274--87311373 Score: 98
Period size: 35 Copynumber: 2.8 Consensus size: 35
87311264 TACTTATAAA
* **
87311274 TTTAGTATAAATATAATTTAATGTATATTTT-AT-T
1 TTTATTATAAATATAATTTAA-AAATATTTTGATAT
*
87311308 GTTTGATT-TAAATATAATTTGTAAAATATTTTGATAT
1 -TTT-ATTATAAATATAATTT-AAAAATATTTTGATAT
*
87311345 TTTATTATGAATATAATTTAAAAATATTT
1 TTTATTATAAATATAATTTAAAAATATTT
87311374 AAATTTTATT
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
35 34 0.63
36 19 0.35
37 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (35 bp):
TTTATTATAAATATAATTTAAAAATATTTTGATAT
Found at i:87311594 original size:21 final size:21
Alignment explanation
Indices: 87311570--87311622 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
87311560 CATTGTTTCT
* *
87311570 AATCTCACCGCTATAATATCC
1 AATCTCACCGCTACAATAACC
* *
87311591 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
87311612 AATCTCACCGC
1 AATCTCACCGC
87311623 CACTGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.08, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:87315973 original size:48 final size:48
Alignment explanation
Indices: 87315901--87316072 Score: 240
Period size: 48 Copynumber: 3.6 Consensus size: 48
87315891 TTACGAGTTA
* * *
87315901 CATTGATTTGGCTTCGGACGATGATATTAGCACTTTGGGTGCGAG-TT
1 CATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGCTT
* * * *
87315948 ACATTGATTTGGATTTGGGCCATGATATTAGCACTTCAGGTACGAGCTT
1 -CATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGCTT
*
87315997 CATTGATTTGGCTTCGAGCCATGATATTAGCACTTCGGGTGCGAGCTT
1 CATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGCTT
87316045 CATTGATTTGGCGTT-GGGCCATGATATT
1 CATTGATTTGGC-TTCGGGCCATGATATT
87316073 GGAAATTAGG
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
48 105 0.96
49 4 0.04
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.35
Consensus pattern (48 bp):
CATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGCTT
Found at i:87316062 original size:96 final size:96
Alignment explanation
Indices: 87315892--87316072 Score: 278
Period size: 96 Copynumber: 1.9 Consensus size: 96
87315882 AACATGTCAT
* *
87315892 TACGAGTTACATTGATTTGGCTTCGGACGATGATATTAGCACTTTGGGTGCGAGTTACATTGATT
1 TACGAGTTACATTGATTTGGCTTCGGACCATGATATTAGCACTTCGGGTGCGAGTTACATTGATT
*
87315957 TGGATTTGGGCCATGATATTAGCACTTCAGG
66 TGGAGTTGGGCCATGATATTAGCACTTCAGG
87315988 TACGAGCTT-CATTGATTTGGCTTC-GAGCCATGATATTAGCACTTCGGGTGCGAGCTT-CATTG
1 TACGAG-TTACATTGATTTGGCTTCGGA-CCATGATATTAGCACTTCGGGTGCGAG-TTACATTG
*
87316050 ATTTGGCGTTGGGCCATGATATT
63 ATTTGGAGTTGGGCCATGATATT
87316073 GGAAATTAGG
Statistics
Matches: 78, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
95 2 0.03
96 72 0.92
97 4 0.05
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (96 bp):
TACGAGTTACATTGATTTGGCTTCGGACCATGATATTAGCACTTCGGGTGCGAGTTACATTGATT
TGGAGTTGGGCCATGATATTAGCACTTCAGG
Found at i:87320687 original size:37 final size:37
Alignment explanation
Indices: 87320637--87320715 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
87320627 TTATTACGAA
* * *
87320637 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
87320674 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
87320711 GTCTT
1 GTCTT
87320716 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:87320993 original size:47 final size:48
Alignment explanation
Indices: 87320833--87321057 Score: 400
Period size: 47 Copynumber: 4.7 Consensus size: 48
87320823 GCCTTTCGGG
87320833 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
87320883 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
87320932 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
*
87320979 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
87321026 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
87321058 ATACTATCAT
Statistics
Matches: 174, Mismatches: 1, Indels: 3
0.98 0.01 0.02
Matches are distributed among these distances:
47 86 0.49
49 84 0.48
50 4 0.02
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
Found at i:87321016 original size:96 final size:95
Alignment explanation
Indices: 87320833--87321057 Score: 398
Period size: 96 Copynumber: 2.3 Consensus size: 95
87320823 GCCTTTCGGG
87320833 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATACACTTTCACATTCATC
87320898 ACATCGGCCATTAGGCCCTATCACATATATATAC
64 ACATCGGCCATTAGGCCCTATCAC--ATATATAC
87320932 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC-ATATATACACTTTCACATTCATCAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCAC
*
87320996 ATCGGCCATTAGGCCTTATCACATATATAC
66 ATCGGCCATTAGGCCCTATCACATATATAC
87321026 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
87321058 ATACTATCAT
Statistics
Matches: 125, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
94 40 0.32
96 46 0.37
98 35 0.28
99 4 0.03
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (95 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCCTATCACATATATAC
Found at i:87324159 original size:41 final size:41
Alignment explanation
Indices: 87324103--87324194 Score: 184
Period size: 41 Copynumber: 2.2 Consensus size: 41
87324093 CGTGCAGGGG
87324103 ACACACGGCCGGACAACATGCCCATGGGGCTAGCGTGTGTC
1 ACACACGGCCGGACAACATGCCCATGGGGCTAGCGTGTGTC
87324144 ACACACGGCCGGACAACATGCCCATGGGGCTAGCGTGTGTC
1 ACACACGGCCGGACAACATGCCCATGGGGCTAGCGTGTGTC
87324185 ACACACGGCC
1 ACACACGGCC
87324195 TAGACACACG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.23, C:0.34, G:0.30, T:0.13
Consensus pattern (41 bp):
ACACACGGCCGGACAACATGCCCATGGGGCTAGCGTGTGTC
Found at i:87325013 original size:47 final size:48
Alignment explanation
Indices: 87324944--87325069 Score: 132
Period size: 47 Copynumber: 2.6 Consensus size: 48
87324934 TATAGTGCTG
* * *
87324944 ATGCCATGCCCTAAACATGGTCTTACACTGTCTCATC-CAT-CAAGT-CA
1 ATGCCATGTCCTAGACATGGTCTTACACTGACTC-TCACATAC-AGTCCA
* * *
87324991 ATGCCATGTCCTAGACATGGTCTTACATTGACTCTCACATATCCGTGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGACTCTCACATA-CAGT-CCA
*
87325041 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCTAGACATGGTCTTACACT
87325070 AACACATTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
46 2 0.03
47 33 0.50
48 2 0.03
49 1 0.02
50 28 0.42
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCTAGACATGGTCTTACACTGACTCTCACATACAGTCCA
Found at i:87325151 original size:47 final size:46
Alignment explanation
Indices: 87325083--87325210 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 46
87325073 ACATTTTGTA
** * * * **
87325083 GCCAATGCATGTAACAAACATGTCTCACACTAGCTCTCGTCTTAAT-
1 GCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAT-ATG
* * *
87325129 GCCGATGCCATGTCCCAGACATGGTATTACACTAGCTCTCATAATGTG
1 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATATG
87325177 GCCAATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCAATGCATGTCCCAGACATGTCTTACACTAGC
87325211 ACACAAATGA
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 18 0.27
47 26 0.39
48 23 0.34
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (46 bp):
GCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATG
Found at i:87336708 original size:46 final size:45
Alignment explanation
Indices: 87336634--87336840 Score: 174
Period size: 46 Copynumber: 4.6 Consensus size: 45
87336624 GTCGATGCAG
* * *
87336634 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT--CCGTAGCCGACGCA
*
87336680 TGTCCCAGACATGTCTTACACTAGCACATCTCC-TAGCCGACACA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCCGTAGCCGACGCA
* * *
87336724 TGTCCCAGACATGTCTGACACTGGCTAACATCT-CG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC--ACATCTCCGTA-GCCGACGCA
* * * * * *
87336770 TGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTAGCACATC-T-CCGTAGCCGACGCA
*
87336816 TGTCCTAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
87336841 CCTCGTCTCA
Statistics
Matches: 136, Mismatches: 15, Indels: 20
0.80 0.09 0.12
Matches are distributed among these distances:
43 3 0.02
44 34 0.25
45 2 0.01
46 96 0.71
47 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCCGTAGCCGACGCA
Found at i:87336860 original size:46 final size:44
Alignment explanation
Indices: 87336677--87336885 Score: 122
Period size: 46 Copynumber: 4.5 Consensus size: 44
87336667 CCGTGCTGAC
* * * *
87336677 GCATGTCCCAGACATGTCTTACACTAGCACATC-TCCTA-GCCGAC
1 GCATGT-CCAGACATGTCTTACACTAGC-CCTCATACTATGGCGAT
* * * ***
87336721 ACATGTCCCAGACATGTCTGACACTGGCTAACAT-CTCGA-GGCCGAT
1 GCATGT-CCAGACATGTCTTACACTAGCCCTCATACT--ATGG-CGAT
* * *
87336767 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACTGTGGCTGAT
1 GCATGT-CCAGACATGTCTTACACTAGCCCTCATACTATGGC-GAT
* *
87336813 GCATGTCCTAGACATGTCTTACACTAGCCCTCGT-CTCAATGTCGAT
1 GCATGTCC-AGACATGTCTTACACTAGCCCTCATACT--ATGGCGAT
87336859 GCCATGTTCCAGACATGGTCTTACACT
1 G-CATG-TCCAGACAT-GTCTTACACT
87336886 GGCACATAAA
Statistics
Matches: 135, Mismatches: 17, Indels: 22
0.78 0.10 0.13
Matches are distributed among these distances:
43 4 0.03
44 26 0.19
45 7 0.05
46 70 0.52
47 15 0.11
48 13 0.10
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (44 bp):
GCATGTCCAGACATGTCTTACACTAGCCCTCATACTATGGCGAT
Found at i:87342434 original size:46 final size:46
Alignment explanation
Indices: 87342376--87342545 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
87342366 CATTTTGTAA
* *
87342376 CCGATGCATGTCTCAGGCATGTCTTACACTGGCT-TACATCTCGATG
1 CCGATGCATGTCTCAGACATGTCTTACACTGGCTCT-CATCTCAATG
* * *
87342422 CTGATGCATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCATGTCTCAGACATGTCTTACACTGGCTCTCATCTCAATG
* *
87342468 CCGATGCCATGTCCCAGACATGGTCTTACACTGGGTCTCA--T-AATGTGG
1 CCGATG-CATGTCTCAGACAT-GTCTTACACTGGCTCTCATCTCAA--T-G
* *
87342516 CCGATGCATGTCCCAAACATGTCTTACACT
1 CCGATGCATGTCTCAGACATGTCTTACACT
87342546 AGCACACAAA
Statistics
Matches: 107, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
45 2 0.02
46 55 0.51
47 28 0.26
48 22 0.21
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
CCGATGCATGTCTCAGACATGTCTTACACTGGCTCTCATCTCAATG
Found at i:87342526 original size:47 final size:45
Alignment explanation
Indices: 87342280--87342545 Score: 172
Period size: 46 Copynumber: 5.7 Consensus size: 45
87342270 ACGGGGTATA
87342280 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA-
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-T-CAT-AAT
* * * * **
87342329 GT--CGATCCCAAGTCCCAGACATGGTCTTACACT-G-ACACATTTT
1 GTGCCGAT-GCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAAT
* * * *
87342372 GTAACCGATGCATGTCTCAGGCATGTCTTACACTGGCT-TACAT-CT
1 GT-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT
* * * *
87342417 CGATGCTGATGCATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAA-
1 -G-TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTC--AT-AAT
*
87342466 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGGTCTCATAAT
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAAT
*
87342512 GTGGCCGATGCATGTCCCAAACATGTCTTACACT
1 GT-GCCGATGCATGTCCCAGACATGTCTTACACT
87342546 AGCACACAAA
Statistics
Matches: 172, Mismatches: 25, Indels: 43
0.72 0.10 0.18
Matches are distributed among these distances:
43 5 0.03
44 10 0.06
45 16 0.09
46 59 0.34
47 57 0.33
48 23 0.13
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GTGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAAT
Found at i:87342778 original size:62 final size:63
Alignment explanation
Indices: 87342678--87342802 Score: 216
Period size: 62 Copynumber: 2.0 Consensus size: 63
87342668 CATATCAAAC
*
87342678 TAAACACATATAATAACAATGTTGTCGTATTTTTTACATAAAATTAACCTCGGTATACAAAAT
1 TAAACACATATAATAACAATGTTGTCGTATTTTTTACATAAAACTAACCTCGGTATACAAAAT
* *
87342741 TAAACACATATAATAA-AATGTTGTTGTATTTTTTACATACAACTAACCTCGGTATACAAAAT
1 TAAACACATATAATAACAATGTTGTCGTATTTTTTACATAAAACTAACCTCGGTATACAAAAT
87342803 GTAGACTACT
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
62 43 0.73
63 16 0.27
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.35
Consensus pattern (63 bp):
TAAACACATATAATAACAATGTTGTCGTATTTTTTACATAAAACTAACCTCGGTATACAAAAT
Found at i:87353458 original size:74 final size:74
Alignment explanation
Indices: 87353365--87353507 Score: 234
Period size: 74 Copynumber: 1.9 Consensus size: 74
87353355 TCAGACGAAA
*
87353365 TCTCCACACGAAATAATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 TCTCCACACGAAATAATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTCACC
87353430 CGGACATAC
66 CGGACATAC
* * *
87353439 TCTCCACAC-ATAATCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTCAC
1 TCTCCACACGA-AATAATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTCAC
87353503 CCGGA
65 CCGGA
87353508 ATATATTTCC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
73 1 0.02
74 63 0.98
ACGTcount: A:0.27, C:0.34, G:0.17, T:0.22
Consensus pattern (74 bp):
TCTCCACACGAAATAATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTCACC
CGGACATAC
Found at i:87353505 original size:37 final size:37
Alignment explanation
Indices: 87353363--87353507 Score: 209
Period size: 37 Copynumber: 3.9 Consensus size: 37
87353353 GCTCAGACGA
* * * *
87353363 AATCTCCACACGAAATAATCGGGTCTTACCCAGACAA
1 AATCTCCACACGTAATCATCGGGTCTTACCCGGACAT
*
87353400 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAATCATCGGGTCTTACCCGGACAT
* *
87353437 ACTCTCCACACATAATCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAATCATCGGGTCTTACCCGGACAT
* *
87353474 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAATCATCGGGTCTTACCCGGA
87353508 ATATATTTCC
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (37 bp):
AATCTCCACACGTAATCATCGGGTCTTACCCGGACAT
Found at i:87353745 original size:47 final size:47
Alignment explanation
Indices: 87353669--87354062 Score: 500
Period size: 47 Copynumber: 8.1 Consensus size: 47
87353659 CATACATATC
* * * * * **
87353669 TCACATTAGCCATTTGGCTTTACCACATATATACATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
* * *
87353716 TCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
*
87353763 TCACATTGGCCATTCGGCCTTATCACCCATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
87353810 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
* ** *
87353857 TCACATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCA
87353910 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
* * ** *
87353957 TCACATTGGCCGTTCGGCCTTATCACGCATATATATATACAGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCA
87354010 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
87354057 TCACAT
1 TCACAT
87354063 AAAATCCTAA
Statistics
Matches: 306, Mismatches: 29, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
47 219 0.72
49 2 0.01
51 2 0.01
53 83 0.27
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
Found at i:87353775 original size:94 final size:99
Alignment explanation
Indices: 87353693--87354062 Score: 597
Period size: 100 Copynumber: 3.8 Consensus size: 99
87353683 TGGCTTTACC
* * * *
87353693 ACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCAC
1 ACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC
87353758 ATTCATCACATTGGCCATTCGGCCTTATCAC-C-
66 ATTCATCACATTGGCCATTCGGCCTTATCACGCA
** *
87353790 -C--ATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC
1 ACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC
87353852 ATTCATCACATTGGCCATTCGGCCTTATCACGCA
66 ATTCATCACATTGGCCATTCGGCCTTATCACGCA
*
87353886 TATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCA
1 -ACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCA
*
87353951 CATTCATCACATTGGCCGTTCGGCCTTATCACGCA
65 CATTCATCACATTGGCCATTCGGCCTTATCACGCA
*
87353986 TATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCA
1 -ACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCA
87354051 CATTCATCACAT
65 CATTCATCACAT
87354063 AAAATCCTAA
Statistics
Matches: 257, Mismatches: 10, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
94 87 0.34
95 1 0.00
96 1 0.00
100 168 0.65
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (99 bp):
ACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC
ATTCATCACATTGGCCATTCGGCCTTATCACGCA
Found at i:87353907 original size:53 final size:53
Alignment explanation
Indices: 87353846--87354040 Score: 294
Period size: 53 Copynumber: 3.8 Consensus size: 53
87353836 ACATACGCAT
87353846 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATACAG
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATACAG
* ** *
87353899 GTTCACATTCATCACATTGGCCATTCGGCCTTATCA--C----ACATACGCAT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATACAG
*
87353946 GTTCACATTCATCACATTGGCCGTTCGGCCTTATCACGCATATATATATACAG
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATACAG
*
87353999 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATA
87354041 CGCATGTTCA
Statistics
Matches: 125, Mismatches: 11, Indels: 12
0.84 0.07 0.08
Matches are distributed among these distances:
47 41 0.33
49 1 0.01
51 1 0.01
53 82 0.66
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (53 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATACAG
Found at i:87354050 original size:147 final size:141
Alignment explanation
Indices: 87353669--87354062 Score: 545
Period size: 147 Copynumber: 2.7 Consensus size: 141
87353659 CATACATATC
* * * *
87353669 TCACATTAGCCATTTGGCTTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
87353734 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACCCATACGCAT
66 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
87353799 GTTCACATTCA
131 GTTCACATTCA
* **
87353810 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
87353875 CTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
66 CTTATCA--C----ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
87353940 ACGCATGTTCACATTCA
125 ACGCATGTTCACATTCA
* *
87353957 TCACATTGGCCGTTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCA
1 TCACATTGGCCATTCGGCCTTATCA--C----ATATATACATGTTCACATTCATCACATTGGCCA
* *
87354022 TTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
60 TTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
87354063 AAAATCCTAA
Statistics
Matches: 221, Mismatches: 20, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
141 64 0.29
143 1 0.00
147 112 0.51
149 1 0.00
151 1 0.00
153 42 0.19
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (141 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
GTTCACATTCA
Found at i:87356657 original size:47 final size:47
Alignment explanation
Indices: 87356534--87356659 Score: 207
Period size: 47 Copynumber: 2.7 Consensus size: 47
87356524 CATACATGTT
* * *
87356534 TCACATTAGCCATTCGGCCTTGTCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
87356581 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
87356628 TCACATTGGCCATTCGGCCTTATCTCATATAT
1 TCACATTGGCCATTCGGCCTTATCACATATAT
87356660 ACACATAAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:87363432 original size:58 final size:58
Alignment explanation
Indices: 87363294--87363437 Score: 168
Period size: 57 Copynumber: 2.5 Consensus size: 58
87363284 CCTCATAACA
* * ** * *
87363294 TATAACAGGATTA-TAGTCCAGGATAAATCCTTTTTGTAATATATGCTCAGAAGAGCT
1 TATATCAGGATTACTAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAGAAGAGAT
* * * *
87363351 CA-ATTAGGATTACCAGTCTAGGCTAAATCCTAATTGTAACATATGCTCGAGAAG-GAT
1 TATATCAGGATTACTAGTCCAGGCTAAATCCTAATTGTAACATATGCTC-AGAAGAGAT
87363408 TATATCAGGATTACTAGTCCAGGCTAAATC
1 TATATCAGGATTACTAGTCCAGGCTAAATC
87363438 TCGTCAGTAA
Statistics
Matches: 70, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
56 8 0.11
57 33 0.47
58 29 0.41
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (58 bp):
TATATCAGGATTACTAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAGAAGAGAT
Found at i:87365309 original size:43 final size:43
Alignment explanation
Indices: 87365248--87365329 Score: 164
Period size: 43 Copynumber: 1.9 Consensus size: 43
87365238 CAGCTTCAAC
87365248 TGTCTTGAAGCATAAGAAATGACTTTGCCTTCTTGCATCCAAT
1 TGTCTTGAAGCATAAGAAATGACTTTGCCTTCTTGCATCCAAT
87365291 TGTCTTGAAGCATAAGAAATGACTTTGCCTTCTTGCATC
1 TGTCTTGAAGCATAAGAAATGACTTTGCCTTCTTGCATC
87365330 AAAACACATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (43 bp):
TGTCTTGAAGCATAAGAAATGACTTTGCCTTCTTGCATCCAAT
Found at i:87378943 original size:38 final size:38
Alignment explanation
Indices: 87378901--87379115 Score: 328
Period size: 38 Copynumber: 5.7 Consensus size: 38
87378891 GCTTAAAGGT
87378901 CCGCAGGCTTCGTGCTGGTATTATATCCAGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTATTATATCCAGGTTAAATC
*
87378939 CCGCAGGCTTCGTGCTGGTACTATATCCAGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTATTATATCCAGGTTAAATC
* *
87378977 CCG-ATGGCTTCGAGCTGGTATTATATCCGGGTTAAATC
1 CCGCA-GGCTTCGTGCTGGTATTATATCCAGGTTAAATC
*
87379015 CCGCAGGCTTCGTGATGGTATTATATCC-GAGTTAAATC
1 CCGCAGGCTTCGTGCTGGTATTATATCCAG-GTTAAATC
* *
87379053 TCGCA-GCTTCGTGCTGGTATTATATCCGGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTATTATATCCAGGTTAAATC
*
87379090 CCGCAGGCTTAGTGCTGGTATTATAT
1 CCGCAGGCTTCGTGCTGGTATTATAT
87379116 TCGAGCTTAA
Statistics
Matches: 162, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
37 35 0.22
38 126 0.78
39 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32
Consensus pattern (38 bp):
CCGCAGGCTTCGTGCTGGTATTATATCCAGGTTAAATC
Found at i:87386734 original size:38 final size:38
Alignment explanation
Indices: 87386689--87386862 Score: 269
Period size: 38 Copynumber: 4.6 Consensus size: 38
87386679 TAAAGGTCCA
87386689 CAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCG
1 CAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCG
* * *
87386727 CAGGCTTCGTGCTGGTACTATATCTGAGTTAAATCCCG
1 CAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCG
* * *
87386765 CAGGCTTCGTGCTGGTACTATATCCGGGTAAAATCCTG
1 CAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCG
87386803 CAGGCTTCGTGCTGGTATTA-ATCCGGGTTAAATCCCG
1 CAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCG
* *
87386840 CAGGCTTAGTGCAGGTATTATAT
1 CAGGCTTCGTGCTGGTATTATAT
87386863 TCGAGCTTAA
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
37 33 0.27
38 90 0.73
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCG
Found at i:87389390 original size:23 final size:23
Alignment explanation
Indices: 87389364--87389408 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
87389354 TTCCTCCATT
87389364 CTTTTTTTATTATT-TTTTCTCTC
1 CTTTTTTTATT-TTCTTTTCTCTC
*
87389387 CTTTTTTTCTTTTCTTTTCTCT
1 CTTTTTTTATTTTCTTTTCTCT
87389409 TTTTTATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (23 bp):
CTTTTTTTATTTTCTTTTCTCTC
Found at i:87394457 original size:27 final size:27
Alignment explanation
Indices: 87394419--87394475 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
87394409 GTTGGATGGG
87394419 GTTATCATGCATTAATCATATGAGACT
1 GTTATCATGCATTAATCATATGAGACT
87394446 GTTATCATGCATTAATCATATGAGACT
1 GTTATCATGCATTAATCATATGAGACT
87394473 GTT
1 GTT
87394476 TTGTTATGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39
Consensus pattern (27 bp):
GTTATCATGCATTAATCATATGAGACT
Found at i:87396354 original size:30 final size:30
Alignment explanation
Indices: 87396298--87396354 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
87396288 TTTCGAGACA
* **
87396298 AGGGGTAAAATGGTCATTTTGTCAAAGTCT
1 AGGGGCAAAATGGTCATTTTACCAAAGTCT
87396328 AGGGGCAAAATGGTCATTTTACCAAAG
1 AGGGGCAAAATGGTCATTTTACCAAAG
87396355 ATATGAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.28
Consensus pattern (30 bp):
AGGGGCAAAATGGTCATTTTACCAAAGTCT
Found at i:87396837 original size:46 final size:45
Alignment explanation
Indices: 87396743--87396911 Score: 146
Period size: 46 Copynumber: 3.6 Consensus size: 45
87396733 GAGAGCCAGC
** *
87396743 GTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGTGCTAGT
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCATCAAGATAAGT-CTAGT
*
87396791 GTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGTAAGT-TAGT
1 GTAAGACATGTCTGGGACATGCATCGGCATCAAGA--TAAGTCTAGT
* * * * **
87396837 GTAAGACATGTTTGGGACATGCATTGG-TTACGAGATGTGTC-AGT
1 GTAAGACATGTCTGGGACATGCATCGGCAT-CAAGATAAGTCTAGT
*
87396881 GTAAGACCATGTCTGGGACACAGCATCGGCA
1 GTAAGA-CATGTCTGGGACA-TGCATCGGCA
87396912 CAGATATGCT
Statistics
Matches: 100, Mismatches: 14, Indels: 15
0.78 0.11 0.12
Matches are distributed among these distances:
44 12 0.12
45 13 0.13
46 51 0.51
47 14 0.14
48 10 0.10
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (45 bp):
GTAAGACATGTCTGGGACATGCATCGGCATCAAGATAAGTCTAGT
Found at i:87404082 original size:15 final size:15
Alignment explanation
Indices: 87404062--87404104 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
87404052 TATTAGAAAT
87404062 AAATAGATATTATAA
1 AAATAGATATTATAA
87404077 AAATAGA-A--AT--
1 AAATAGATATTATAA
87404087 AAATAGATATTATAA
1 AAATAGATATTATAA
87404102 AAA
1 AAA
87404105 GAAACTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 7 0.30
11 1 0.04
12 2 0.09
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATAGATATTATAA
Found at i:87404083 original size:25 final size:25
Alignment explanation
Indices: 87404055--87404104 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
87404045 AAATATTTAT
87404055 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
87404080 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
87404105 GAAACTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (25 bp):
TAGAAATAAATAGATATTATAAAAA
Found at i:87405414 original size:30 final size:30
Alignment explanation
Indices: 87405358--87405414 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
87405348 TTTCGGGACA
* **
87405358 AGGGGTAAAATGGTCATTTTGTCAAAGTCT
1 AGGGGCAAAATGGTCATTTTACCAAAGTCT
87405388 AGGGGCAAAATGGTCATTTTACCAAAG
1 AGGGGCAAAATGGTCATTTTACCAAAG
87405415 ATATGAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.28
Consensus pattern (30 bp):
AGGGGCAAAATGGTCATTTTACCAAAGTCT
Found at i:87405902 original size:46 final size:44
Alignment explanation
Indices: 87405799--87405960 Score: 166
Period size: 46 Copynumber: 3.5 Consensus size: 44
87405789 TTATGAGAGC
* *
87405799 CAGTGTAAGACAATGTCTGGGACATAGCATCGGTATTGAGAC-TAGT
1 CAGTGTAAGAC-ATGTCTGGGACAT-GCATCGG-CTCGAGACGTAGT
* * *
87405845 GATAATATAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGT
1 --CAGTGTAAGACATGTCTGGGACATGCATCGG-CTCGAGACGT-AGT
*
87405893 CAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT-GT
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGACGTAGT
*
87405937 CAGTGTAAGACCATGTTTGGGACA
1 CAGTGTAAGA-CATGTCTGGGACA
87405961 CAACATCGGC
Statistics
Matches: 99, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
44 12 0.12
45 14 0.14
46 48 0.48
47 14 0.14
48 11 0.11
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (44 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGACGTAGT
Found at i:87405969 original size:92 final size:94
Alignment explanation
Indices: 87405799--87405970 Score: 212
Period size: 92 Copynumber: 1.9 Consensus size: 94
87405789 TTATGAGAGC
*
87405799 CAGTGTAAGACAATGTCTGGGACATAGCATCGGTATTGAGACTAGTGATAATATAAGACATGTCT
1 CAGTGTAAGACAATGTCTGGGACATAGCATCGGTATCGAGACTAGTGATAATATAAGACATGTCT
**
87405864 GGGACATGCATCGGCCTCGAGACGTAAGT
66 GGGACAAACATCGGCCTCGAGACGTAAGT
* *
87405893 CAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCTA-CGAGA-T-GTG-TCAGTGTAAGACCATG
1 CAGTGTAAGACAATGTCTGGGACATAGCATCGG-TATCGAGACTAGTGAT-AATATAAGA-CATG
*
87405952 TTTGGGACACAACATCGGC
63 TCTGGGACA-AACATCGGC
87405971 ACAGATATGC
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
89 1 0.01
90 10 0.15
91 13 0.19
92 18 0.26
93 15 0.22
94 11 0.16
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (94 bp):
CAGTGTAAGACAATGTCTGGGACATAGCATCGGTATCGAGACTAGTGATAATATAAGACATGTCT
GGGACAAACATCGGCCTCGAGACGTAAGT
Found at i:87408208 original size:27 final size:27
Alignment explanation
Indices: 87408134--87408208 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 27
87408124 TCTTAACCTT
* *
87408134 ATTTTACCCCCAATGAAA-TTTTGACG
1 ATTTTACCCCTAATAAAATTTTTGACG
**
87408160 ATTTTA-CCCTAGA-AACTTTTTTTGACG
1 ATTTTACCCCTA-ATAA-AATTTTTGACG
87408187 ATTTTACCCCTAATAAAATTTT
1 ATTTTACCCCTAATAAAATTTT
87408209 GATAAAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
25 5 0.13
26 7 0.18
27 19 0.50
28 7 0.18
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (27 bp):
ATTTTACCCCTAATAAAATTTTTGACG
Found at i:87410098 original size:31 final size:31
Alignment explanation
Indices: 87410060--87410130 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
87410050 AAACAAATGG
*
87410060 GTGACCAAAATAATAAATTATTGC-AACAGTA
1 GTGACCAAAACAATAAATTATT-CTAACAGTA
*
87410091 GTGACCAAAACAATAAATTATTCTAATAGTA
1 GTGACCAAAACAATAAATTATTCTAACAGTA
*
87410122 GTGATCAAA
1 GTGACCAAA
87410131 TTTAAAGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 1 0.03
31 35 0.97
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.27
Consensus pattern (31 bp):
GTGACCAAAACAATAAATTATTCTAACAGTA
Found at i:87413332 original size:16 final size:16
Alignment explanation
Indices: 87413311--87413365 Score: 74
Period size: 17 Copynumber: 3.3 Consensus size: 16
87413301 GTAGTAGGGG
*
87413311 TTTTTTGAGGAGTTTT
1 TTTTTTGAGAAGTTTT
87413327 TTTTTTGAGAAGTTTTT
1 TTTTTTGAGAAG-TTTT
*
87413344 TTTTTTGAATAAGTTTT
1 TTTTTTG-AGAAGTTTT
87413361 TTTTT
1 TTTTT
87413366 GGGGGGGGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
16 11 0.31
17 20 0.57
18 4 0.11
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.67
Consensus pattern (16 bp):
TTTTTTGAGAAGTTTT
Found at i:87413344 original size:18 final size:17
Alignment explanation
Indices: 87413311--87413365 Score: 76
Period size: 18 Copynumber: 3.2 Consensus size: 17
87413301 GTAGTAGGGG
*
87413311 TTTTTTGAGGAG-TTTT
1 TTTTTTGAGAAGTTTTT
87413327 TTTTTTGAGAAGTTTTT
1 TTTTTTGAGAAGTTTTT
*
87413344 TTTTTTGAATAAGTTTTT
1 TTTTTTG-AGAAGTTTTT
87413362 TTTT
1 TTTT
87413366 GGGGGGGGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.31
17 11 0.31
18 13 0.37
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.67
Consensus pattern (17 bp):
TTTTTTGAGAAGTTTTT
Found at i:87413767 original size:23 final size:25
Alignment explanation
Indices: 87413741--87413786 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
87413731 TTTTTTTTGT
87413741 TATTAT-TATATT-TCTTAATATCA
1 TATTATATATATTCTCTTAATATCA
*
87413764 TATTATATATATTCTTTTAATAT
1 TATTATATATATTCTCTTAATAT
87413787 ATTAGGTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59
Consensus pattern (25 bp):
TATTATATATATTCTCTTAATATCA
Found at i:87413848 original size:25 final size:25
Alignment explanation
Indices: 87413818--87413944 Score: 84
Period size: 25 Copynumber: 5.2 Consensus size: 25
87413808 ATATTACGTG
*
87413818 TGTATATATA-TT-ATACTATTTTA
1 TGTATATATATTTAATACTATATTA
*
87413841 TGTATATATCTTTAATACTATATTA
1 TGTATATATATTTAATACTATATTA
* * * ** *
87413866 TTTATATTTTTTTCTACATGTTATCTTA
1 TGTATA-TATATT-TA-ATACTATATTA
87413894 TGTATATAT-TTTAAT--TATATTA
1 TGTATATATATTTAATACTATATTA
* * * *
87413916 TGTATGTATTTTTTACACTATATTA
1 TGTATATATATTTAATACTATATTA
87413941 TGTA
1 TGTA
87413945 CATTTTTTTA
Statistics
Matches: 82, Mismatches: 14, Indels: 14
0.75 0.13 0.13
Matches are distributed among these distances:
22 14 0.17
23 13 0.16
24 4 0.05
25 28 0.34
26 6 0.07
27 4 0.05
28 13 0.16
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (25 bp):
TGTATATATATTTAATACTATATTA
Found at i:87413911 original size:22 final size:22
Alignment explanation
Indices: 87413818--87413993 Score: 72
Period size: 25 Copynumber: 7.5 Consensus size: 22
87413808 ATATTACGTG
* * *
87413818 TGTATATATATTATACTATTTTA
1 TGTATATATTTTA-ATTATATTA
87413841 TGTATATATCTTTAATACTATATTA
1 TGTATATAT-TTTAAT--TATATTA
* * *
87413866 TTTATATTTTTTTCTACATGTTATCTTA
1 TGTATA--TATTT-TA-A--TTATATTA
87413894 TGTATATATTTTAATTATATTA
1 TGTATATATTTTAATTATATTA
* *
87413916 TGTATGTATTTTTTACACTATATTA
1 TGTA--TATATTTTA-ATTATATTA
* * *
87413941 TGTACATTTTTTTAA-TATTATCA
1 TGTATA-TATTTTAATTA-TATTA
*
87413964 CGTATATATTTT--TTATA-TA
1 TGTATATATTTTAATTATATTA
*
87413983 TGTAGATATTT
1 TGTATATATTT
87413994 ATGTAGTATT
Statistics
Matches: 119, Mismatches: 19, Indels: 34
0.69 0.11 0.20
Matches are distributed among these distances:
19 10 0.08
20 2 0.02
21 2 0.02
22 18 0.15
23 20 0.17
24 19 0.16
25 25 0.21
26 6 0.05
27 4 0.03
28 12 0.10
30 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (22 bp):
TGTATATATTTTAATTATATTA
Found at i:87429665 original size:10 final size:10
Alignment explanation
Indices: 87429649--87429680 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
87429639 AGGGCATCTT
87429649 AAAAAAAAGAG
1 AAAAAAAA-AG
87429660 AAAAAAAAAG
1 AAAAAAAAAG
87429670 AAAAAAAAAG
1 AAAAAAAAAG
87429680 A
1 A
87429681 GAGAGGGATC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 13 0.62
11 8 0.38
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:87429666 original size:12 final size:12
Alignment explanation
Indices: 87429649--87429684 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
87429639 AGGGCATCTT
87429649 AAAAAAAAGAGA
1 AAAAAAAAGAGA
87429661 AAAAAAAAGA-A
1 AAAAAAAAGAGA
87429672 AAAAAAAGAGAGA
1 AAAAAAA-AGAGA
87429685 GGGATCAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 8 0.36
12 13 0.59
13 1 0.05
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAGA
Found at i:87430768 original size:73 final size:73
Alignment explanation
Indices: 87430624--87430790 Score: 226
Period size: 73 Copynumber: 2.3 Consensus size: 73
87430614 ATTTCCATTT
* *
87430624 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTAGGACACA
1 TTTCAATTTATGCTTTTC-AAAAATCAACTCATATTACGAGAGGTGAGCTGAGCCTCAGGACACA
*
87430689 CTGAGGTAA
65 CCGAGGTAA
* * * *
87430698 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGC
1 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGCTGAGCCTCAGGACACAC
*
87430763 CGAGGTAT
66 CGAGGTAA
* * *
87430771 TTTTAATTTCTGTTTTTCAA
1 TTTCAATTTATGCTTTTCAA
87430791 TTTCTGCTTT
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
73 64 0.78
74 18 0.22
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (73 bp):
TTTCAATTTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGCTGAGCCTCAGGACACAC
CGAGGTAA
Found at i:87430792 original size:14 final size:13
Alignment explanation
Indices: 87430770--87430814 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
87430760 CGCCGAGGTA
87430770 TTTTTAATTTCTG
1 TTTTTAATTTCTG
87430783 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
* *
87430797 CTTTTAATTTCTA
1 TTTTTAATTTCTG
87430810 TTTTT
1 TTTTT
87430815 CAAAAATCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.16, C:0.11, G:0.04, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:87430805 original size:13 final size:13
Alignment explanation
Indices: 87430771--87430808 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
87430761 GCCGAGGTAT
*
87430771 TTTTAATTTCTGT
1 TTTTAATTTCTGC
87430784 TTTTCAATTTCTGC
1 TTTT-AATTTCTGC
87430798 TTTTAATTTCT
1 TTTTAATTTCT
87430809 ATTTTTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.16, C:0.13, G:0.05, T:0.66
Consensus pattern (13 bp):
TTTTAATTTCTGC
Found at i:87430837 original size:100 final size:101
Alignment explanation
Indices: 87430710--87431078 Score: 403
Period size: 100 Copynumber: 3.8 Consensus size: 101
87430700 TCAATTTATG
* * * *
87430710 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTTTT
1 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
** *
87430775 AATTTCTGTTTTTCAATTTCTG-CTTTTAATTTCTA
66 AATTTCTGTTTTTCAATTTCTGCCTTACAAATTCTA
* * *
87430810 TTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGGCACGCTAAGGTATTTTC
1 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
* *
87430875 AATTTCTGTTTTTCAATTTTTGCCTTACAAATTCTG
66 AATTTCTGTTTTTCAATTTCTGCCTTACAAATTCTA
*
87430911 CTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
* **
87430974 AATTTTCAT-TTTTT-AATTTATG--TTTTAAA----A
66 AA-TTTC-TGTTTTTCAATTTCTGCCTTACAAATTCTA
* * * *
87431004 ------AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
* *
87431063 AGTTTCTGTCTTTCAA
66 AATTTCTGTTTTTCAA
87431079 AAAAATCAGC
Statistics
Matches: 237, Mismatches: 25, Indels: 25
0.83 0.09 0.09
Matches are distributed among these distances:
87 1 0.00
88 8 0.03
89 57 0.24
97 5 0.02
99 63 0.27
100 88 0.37
101 15 0.06
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (101 bp):
CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
AATTTCTGTTTTTCAATTTCTGCCTTACAAATTCTA
Found at i:87431178 original size:146 final size:145
Alignment explanation
Indices: 87431003--87431797 Score: 956
Period size: 146 Copynumber: 5.3 Consensus size: 145
87430993 ATGTTTTAAA
* * *
87431003 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAGTTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
* * * *
87431068 CTGTCTT-TCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG-ACGCTGAGGTA
66 TTGT-TTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAACGTTGAGGTA
* *
87431131 ATTTCAATTTTTGTTTGTC
128 TTTTCAATTTCTGTTT-TC
* *
87431150 -AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
** * *
87431214 TTGTCTT-TCAAAAAAATCAGGTCATATTGCGAGAGGTGAGTTGAACCTCAAG-ACGCTGAGGTG
66 TTGT-TTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAACGTTGA-G-G
87431277 TTTTCCATTTCTGTTCTTCAATTTCTGTTTTTC
126 ---T--A------TT-TTCAATTTCTG-TTTTC
* * * * *
87431310 AAAAACATCAAGTCATATTGCAAGAGGTGAGTTGAGCTTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
*
87431375 TTTGTTTGTCAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
65 TTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA-ACGTTGAGGTAT
87431440 TTTCAATTTCTGTTTTTC
129 TTTCAATTTCTG-TTTTC
* *
87431458 AAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAAT
1 --AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAAT
87431523 TTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
64 TTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA-ACGTTGAGGTA
87431588 TTTTCAATTTCTGTCTTTC
128 TTTTCAATTTCTGT-TTTC
* * *
87431607 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
* * * *
87431670 TTTATTTGTCAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCACAAGACACGTTGAGGTAT
65 TTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA-ACGTTGAGGTAT
87431735 TTTCAATTTCTGTCTTTC
129 TTTCAATTTCTGT-TTTC
* *
87431753 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
87431798 GCTAAGGTGT
Statistics
Matches: 591, Mismatches: 32, Indels: 49
0.88 0.05 0.07
Matches are distributed among these distances:
146 259 0.44
147 1 0.00
148 58 0.10
149 136 0.23
150 5 0.01
151 1 0.00
153 1 0.00
155 1 0.00
157 1 0.00
159 1 0.00
160 50 0.08
161 10 0.02
162 67 0.11
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (145 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
TTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAACGTTGAGGTATTT
TCAATTTCTGTTTTC
Found at i:87431202 original size:73 final size:74
Alignment explanation
Indices: 87431003--87431267 Score: 376
Period size: 75 Copynumber: 3.6 Consensus size: 74
87430993 ATGTTTTAAA
* * *
87431003 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAGTTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTT
*
87431068 CTGTCTTTC
66 TTGTCTTTC
* * *
87431077 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATT
87431140 TTTGT-TTGTC
65 TTTGTCTT-TC
* *
87431150 -AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTT
87431214 TTGTCTTTC
66 TTGTCTTTC
**
87431223 AAAAAAATCAGGTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
87431268 GCTGAGGTGT
Statistics
Matches: 168, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
71 38 0.23
72 2 0.01
73 48 0.29
74 2 0.01
75 78 0.46
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (74 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTT
TTGTCTTTC
Found at i:87431274 original size:73 final size:72
Alignment explanation
Indices: 87430983--87431827 Score: 647
Period size: 73 Copynumber: 11.3 Consensus size: 72
87430973 CAATTTTCAT
* * * *
87430983 TTTTTAATTTATGTTTTAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--A
87431048 CGTTGAGGTA
63 CGTTGAGGTA
* * *
87431058 TTTTCAGTTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACG
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG
*
87431123 CTGAGGTA
65 TTGAGGTA
* * *
87431131 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--A
87431194 CGTTGAGGTA
63 CGTTGAGGTA
* ** *
87431204 TTTTCAATTTTTGTCTTTCAAAAAAATCAGGTCATATTGCGAGAGGTGAGTTGAACCTCAAGACG
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG
* *
87431269 CTGAGGTG
65 TTGAGGTA
* ***** * * ** *
87431277 TTTTCCATTTCTGTTCTTCAATTTCTGTTTTTCAAAAACATCA-AGT-C-ATATTGCAAGAGGTG
1 TTTTCAATTTCTGTT-TTCAA-----AAAAATC---AAC-TCATATTGCGAGA--G-GTGAGTTG
** * *
87431339 AG--TTGAG-C-TTCAGGACA
53 AGCCTCAAGACGTTGAGG-TA
** * *** *
87431356 CGCTGAGGT-AATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 ---T--TTTCAATTTC----TGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
87431420 CTCAAGACACGTTGAGGTA
56 CTCAAG--ACGTTGAGGTA
* *
87431439 TTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTCTG-TTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--AG
87431504 ACGTTGAGGTA
62 ACGTTGAGGTA
* *
87431515 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--A
87431578 CGTTGAGGTA
63 CGTTGAGGTA
* *
87431588 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACG
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG
*
87431653 CTGAGGTA
65 TTGAGGTA
* * * * * *
87431661 ATTTCAATTTTTATTTGTC--AAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCACAAGACA
1 TTTTCAATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--A
87431724 CGTTGAGGTA
63 CGTTGAGGTA
* *
87431734 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACG
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG
* * *
87431799 CTAAGGTG
65 TTGAGGTA
*
87431807 TTTTCCATTTCTGTTCTTCAA
1 TTTTCAATTTCTGTT-TTCAA
87431828 TTTCTGTGTT
Statistics
Matches: 609, Mismatches: 103, Indels: 118
0.73 0.12 0.14
Matches are distributed among these distances:
71 75 0.12
72 6 0.01
73 209 0.34
74 6 0.01
75 170 0.28
76 65 0.11
78 18 0.03
79 15 0.02
80 9 0.01
81 6 0.01
82 12 0.02
83 7 0.01
84 6 0.01
87 4 0.01
88 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (72 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGT
TGAGGTA
Found at i:87431935 original size:15 final size:14
Alignment explanation
Indices: 87431899--87431931 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
87431889 CGCTGAGGTA
87431899 TTTTCAAATTTTGT
1 TTTTCAAATTTTGT
87431913 TTTTCAAATTTTGT
1 TTTTCAAATTTTGT
87431927 TTTTC
1 TTTTC
87431932 CAAAAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.06, T:0.67
Consensus pattern (14 bp):
TTTTCAAATTTTGT
Found at i:87432050 original size:91 final size:90
Alignment explanation
Indices: 87431734--87432273 Score: 421
Period size: 93 Copynumber: 6.0 Consensus size: 90
87431724 CGTTGAGGTA
* * * * *
87431734 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AGA
1 TTTTCAATTTATGT-TTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACA
* * *
87431797 CGCTAAGGTGTTTTCCATTTC--TGT
65 CGCTGAGGTATTTTCAATTTCTTTGT
* * * * * * **
87431821 TCTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTC
1 TTTTCAATTTATGT-TTTC-AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCC-TCA-GG
*
87431886 ACACGCTGAGGTATTTTCAA-AT-TTTGT
62 ACACGCTGAGGTATTTTCAATTTCTTTGT
*
87431913 TTTTCAAATTT-TGTTTTTCCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTCAGCCTCAGGA
1 TTTTC-AATTTATG-TTTT-CAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGA
* *
87431977 CACACTGAGGTATTTTCAATTTCTTTTT
63 CACGCTGAGGTATTTTCAATTTCTTTGT
*
87432005 TTTTCAATTTATGTTTGTCAAAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCA
1 TTTTCAATTTATGTTT-TCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG--A
* *
87432070 CACGCCGAGGTATTTTCAATTGATGTTT-T
63 CACGCTGAGGTATTTTCAATT--TCTTTGT
* * * *
87432099 TTTTCCAATTTATGCTTTGC--AAAAATCAACTCATATTATGAGAGGTGAGTCGAGCCTCGGGTC
1 TTTT-CAATTTATG-TTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG--
** * * **
87432162 ACATACCGAAGTATTTTCAAAATC--TGT
62 ACACGCTGAGGTATTTTCAATTTCTTTGT
* * * * *
87432189 TTTACAAATTT-TGTTTT---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTC
1 TTTTC-AATTTATGTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG-AC
*
87432249 ACGTGCTGAGCTATTTTCAATTTCT
64 AC--GCTGAGGTATTTTCAATTTCT
87432274 ATTTTTAATG
Statistics
Matches: 376, Mismatches: 52, Indels: 49
0.79 0.11 0.10
Matches are distributed among these distances:
85 3 0.01
86 2 0.01
87 64 0.17
88 39 0.10
89 6 0.02
90 28 0.07
91 55 0.15
92 74 0.20
93 83 0.22
94 5 0.01
95 14 0.04
96 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (90 bp):
TTTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTATTTTCAATTTCTTTGT
Found at i:87433088 original size:16 final size:16
Alignment explanation
Indices: 87433067--87433115 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
87433057 TAGTAGGGGG
*
87433067 TTTTTGAGGAGTTTTT
1 TTTTTGAGAAGTTTTT
87433083 TTTTTGAGAAG--TTT
1 TTTTTGAGAAGTTTTT
*
87433097 TTTTTAAGAAGTTTTT
1 TTTTTGAGAAGTTTTT
87433113 TTT
1 TTT
87433116 GGGGGGGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 13 0.45
16 16 0.55
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.63
Consensus pattern (16 bp):
TTTTTGAGAAGTTTTT
Found at i:87433097 original size:14 final size:14
Alignment explanation
Indices: 87433080--87433116 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
87433070 TTGAGGAGTT
87433080 TTTTTTTTGAGAAG
1 TTTTTTTTGAGAAG
*
87433094 TTTTTTTTAAGAAG
1 TTTTTTTTGAGAAG
87433108 TTTTTTTTG
1 TTTTTTTTG
87433117 GGGGGGAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.65
Consensus pattern (14 bp):
TTTTTTTTGAGAAG
Found at i:87433525 original size:23 final size:23
Alignment explanation
Indices: 87433488--87433569 Score: 62
Period size: 23 Copynumber: 3.5 Consensus size: 23
87433478 CTTTTTTTGT
87433488 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
87433511 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
** *
87433533 TATTAGGTATATTCTAAAT-TCTA
1 TATTATATATATTCTTAATAT-TA
87433556 TATTACGTATATAT
1 TATTA--TATATAT
87433570 ATATTATACT
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
22 17 0.38
23 19 0.42
24 4 0.09
25 5 0.11
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:87433581 original size:25 final size:25
Alignment explanation
Indices: 87433553--87433706 Score: 82
Period size: 25 Copynumber: 6.0 Consensus size: 25
87433543 ATTCTAAATT
*
87433553 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATAT-TTAATA
* * *
87433578 CTATTTTATGTACATATCTTTAATA
1 CTATATTATGTATATATATTTAATA
* *
87433603 CTATATTATTTATATATATTTTTTTCTACATG
1 CTATATTATGTATATATA-----TT-TA-ATA
* *
87433635 TTATCTTATGTATATAT-TTTAAT-
1 CTATATTATGTATATATATTTAATA
* * * *
87433658 -TATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATATTTAATA
* *
87433682 CTATATTATGTACATATTTTTAATA
1 CTATATTATGTATATATATTTAATA
87433707 TTATCACGTA
Statistics
Matches: 98, Mismatches: 20, Indels: 22
0.70 0.14 0.16
Matches are distributed among these distances:
22 14 0.14
23 4 0.04
24 4 0.04
25 54 0.55
26 2 0.02
30 2 0.02
31 2 0.02
32 16 0.16
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.55
Consensus pattern (25 bp):
CTATATTATGTATATATATTTAATA
Found at i:87433660 original size:22 final size:22
Alignment explanation
Indices: 87433635--87433742 Score: 71
Period size: 22 Copynumber: 4.9 Consensus size: 22
87433625 TTTCTACATG
*
87433635 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
87433657 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
87433682 CTATATTATGTACATATTTTTAA
1 TTATATTATGTATATA-TTTTAA
* * *
87433705 -TATTATCACGTATTTATTTT--
1 TTA-TATTATGTATATATTTTAA
*
87433725 TTATA-TATGTACATATTT
1 TTATATTATGTATATATTT
87433743 ATGTAGTATT
Statistics
Matches: 67, Mismatches: 13, Indels: 15
0.71 0.14 0.16
Matches are distributed among these distances:
19 9 0.13
20 2 0.03
21 2 0.03
22 17 0.25
23 12 0.18
24 13 0.19
25 12 0.18
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:87433709 original size:20 final size:20
Alignment explanation
Indices: 87433684--87433742 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
87433674 TTTTTACACT
87433684 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
87433704 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
87433727 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
87433743 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:87433878 original size:16 final size:15
Alignment explanation
Indices: 87433854--87433901 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
87433844 TAATTATTAT
*
87433854 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
87433870 TATTTTAATATTTTA
1 TATTTTAATATTTTA
*
87433885 TATTTTATATACTTTA
1 TATTTTA-ATATTTTA
87433901 T
1 T
87433902 TATTCACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:87433889 original size:7 final size:8
Alignment explanation
Indices: 87433854--87433905 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
87433844 TAATTATTAT
*
87433854 TATTCTAA
1 TATTTTAA
*
87433862 TATTTTGA
1 TATTTTAA
87433870 TATTTTAA
1 TATTTTAA
87433878 TATTTT-A
1 TATTTTAA
87433885 TATTTTATA
1 TATTTTA-A
* *
87433894 TACTTTAT
1 TATTTTAA
87433902 TATT
1 TATT
87433906 CACATCACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 22 0.61
9 7 0.19
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:87437186 original size:38 final size:39
Alignment explanation
Indices: 87437144--87437227 Score: 98
Period size: 38 Copynumber: 2.2 Consensus size: 39
87437134 AAAAAATTAG
* * * * *
87437144 TATGTATATCATGTACGTTATGTATATTACTATTTATA-
1 TATGTATATCAGGTACGTTATGCAAATTACAATTTACAT
* *
87437182 TATGTATATTAGGTATGTTATGCAAATTACAATTTACAT
1 TATGTATATCAGGTACGTTATGCAAATTACAATTTACAT
87437221 TATGTAT
1 TATGTAT
87437228 GTGTAGTGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
38 31 0.82
39 7 0.18
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (39 bp):
TATGTATATCAGGTACGTTATGCAAATTACAATTTACAT
Found at i:87443949 original size:3 final size:3
Alignment explanation
Indices: 87443941--87443974 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
87443931 GATATCAGTT
87443941 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
87443975 TTATTGAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:87447238 original size:62 final size:62
Alignment explanation
Indices: 87447160--87447284 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
87447150 AGAGGAATTA
*
87447160 AATCAATTTGATAGAAGCAATGTATGGACCCTTGTAGAAAGACCATGTGAAAAATTTACTAT
1 AATCAATTTGAAAGAAGCAATGTATGGACCCTTGTAGAAAGACCATGTGAAAAATTTACTAT
*
87447222 AATCAATTTGAAAGAAGCAATGTATGGACCTTTGTAGAAAGACCATGTGAAAAATTTACTAT
1 AATCAATTTGAAAGAAGCAATGTATGGACCCTTGTAGAAAGACCATGTGAAAAATTTACTAT
87447284 A
1 A
87447285 GCTACTAAGT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.29
Consensus pattern (62 bp):
AATCAATTTGAAAGAAGCAATGTATGGACCCTTGTAGAAAGACCATGTGAAAAATTTACTAT
Found at i:87449933 original size:37 final size:37
Alignment explanation
Indices: 87449848--87449954 Score: 105
Period size: 37 Copynumber: 2.9 Consensus size: 37
87449838 CAAGATAAAC
**
87449848 ATTAAATTAA-ATTTAA-TATTAAAATAATCACTTTAAT
1 ATTAAATTAATATAAAACTATTAAAATAAT-A-TTTAAT
*
87449885 ATTAAATTAATA-AAATACTATTAAGATAAGTATTTAAT
1 ATTAAATTAATATAAA-ACTATTAAAATAA-TATTTAAT
* *
87449923 -TTAATTTAATATTAAACTATTAAAATAATATT
1 ATTAAATTAATATAAAACTATTAAAATAATATT
87449955 ATTTTTGAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
36 4 0.07
37 33 0.56
38 10 0.17
39 11 0.19
40 1 0.02
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (37 bp):
ATTAAATTAATATAAAACTATTAAAATAATATTTAAT
Found at i:87458327 original size:22 final size:22
Alignment explanation
Indices: 87458302--87458348 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
87458292 TCAGCTCTAT
87458302 CTTCCTTTCCATATCTCTTAAC
1 CTTCCTTTCCATATCTCTTAAC
*
87458324 CTTCCTTTCTATATCTCTTAAC
1 CTTCCTTTCCATATCTCTTAAC
87458346 CTT
1 CTT
87458349 GGCTCTTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.34, G:0.00, T:0.49
Consensus pattern (22 bp):
CTTCCTTTCCATATCTCTTAAC
Found at i:87459061 original size:33 final size:33
Alignment explanation
Indices: 87459019--87459086 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
87459009 CAATTGTTGA
87459019 AGTAACCATAGAGTAGAAATGAAATAGAAATAG
1 AGTAACCATAGAGTAGAAATGAAATAGAAATAG
*
87459052 AGTAACCATAGAGTAGAAATGGAATAGAAATAG
1 AGTAACCATAGAGTAGAAATGAAATAGAAATAG
87459085 AG
1 AG
87459087 AACAAATTGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.53, C:0.06, G:0.24, T:0.18
Consensus pattern (33 bp):
AGTAACCATAGAGTAGAAATGAAATAGAAATAG
Found at i:87463595 original size:11 final size:12
Alignment explanation
Indices: 87463577--87463603 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
87463567 AATGAAATTG
87463577 GAAAAAAAAAGT
1 GAAAAAAAAAGT
87463589 GAAAAAAAAAGT
1 GAAAAAAAAAGT
87463601 GAA
1 GAA
87463604 TGATACAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (12 bp):
GAAAAAAAAAGT
Found at i:87465129 original size:16 final size:17
Alignment explanation
Indices: 87465094--87465131 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
87465084 TACTCAACAA
*
87465094 ATTTCCACATTGACTCAT
1 ATTTCCACAATGA-TCAT
87465112 ATTTCCACAATG-TCAT
1 ATTTCCACAATGATCAT
87465128 ATTT
1 ATTT
87465132 GCCAAAGCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.42
Consensus pattern (17 bp):
ATTTCCACAATGATCAT
Found at i:87470403 original size:20 final size:19
Alignment explanation
Indices: 87470359--87470396 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
87470349 GTTGTGTGTT
87470359 TAATTAAGCTTTAATTAAG
1 TAATTAAGCTTTAATTAAG
*
87470378 TGAATTTAGC-TTAATTAAG
1 T-AATTAAGCTTTAATTAAG
87470397 AATAATTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.42
Consensus pattern (19 bp):
TAATTAAGCTTTAATTAAG
Found at i:87470885 original size:17 final size:18
Alignment explanation
Indices: 87470853--87470887 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
87470843 ATTCATAAAT
*
87470853 TAAATAAACATAAAAGAA
1 TAAAGAAACATAAAAGAA
87470871 TAAAGAAAC-TAAAAGAA
1 TAAAGAAACATAAAAGAA
87470888 GAGAAGAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.14
Consensus pattern (18 bp):
TAAAGAAACATAAAAGAA
Found at i:87470894 original size:18 final size:18
Alignment explanation
Indices: 87470858--87470896 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
87470848 TAAATTAAAT
*
87470858 AAACATAAAAGAATAAAG
1 AAACATAAAAGAAGAAAG
87470876 AAAC-TAAAAGAAGAGAAG
1 AAACATAAAAGAAGA-AAG
87470894 AAA
1 AAA
87470897 GAAATGAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.72, C:0.05, G:0.15, T:0.08
Consensus pattern (18 bp):
AAACATAAAAGAAGAAAG
Found at i:87471347 original size:17 final size:18
Alignment explanation
Indices: 87471325--87471358 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
87471315 TAAATGAGTT
87471325 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
87471342 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
87471359 AAAAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:87471728 original size:36 final size:37
Alignment explanation
Indices: 87471637--87471733 Score: 117
Period size: 37 Copynumber: 2.6 Consensus size: 37
87471627 ATATGTGCAG
*
87471637 AATTGAATTGAATAT-TGATTTGAAAATGGAAAAGTGA
1 AATTGAATTGAA-ATGTGATTTGAAAATGAAAAAGTGA
* * *
87471674 ATTTTGAATTGAATTGTGA-TTGAAAGTGAAAAAGTGA
1 A-ATTGAATTGAAATGTGATTTGAAAATGAAAAAGTGA
87471711 AATTGAATTGAAATGTGAATTTG
1 AATTGAATTGAAATGTG-ATTTG
87471734 GAGACCCTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
36 14 0.28
37 20 0.40
38 16 0.32
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (37 bp):
AATTGAATTGAAATGTGATTTGAAAATGAAAAAGTGA
Found at i:87473748 original size:93 final size:93
Alignment explanation
Indices: 87473636--87473806 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
87473626 GCCCATAAGT
* *
87473636 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
87473701 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
87473729 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
87473794 CGAGTTCGGATGC
66 CGAGTTCGGATGC
87473807 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:87473803 original size:46 final size:46
Alignment explanation
Indices: 87473628--87473803 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
87473618 TGTAACCCGC
* * *
87473628 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
87473674 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
87473724 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
87473767 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
87473804 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:87476224 original size:30 final size:30
Alignment explanation
Indices: 87476180--87476268 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
87476170 CAAAGATAAC
87476180 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
87476209 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
87476239 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
87476269 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:87476228 original size:15 final size:15
Alignment explanation
Indices: 87476180--87476259 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
87476170 CAAAGATAAC
*
87476180 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
87476194 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
87476209 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
87476224 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
87476239 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
87476254 AAGAAA
1 AAGAAA
87476260 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:87476268 original size:15 final size:15
Alignment explanation
Indices: 87476191--87476268 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
87476181 AGAAAACCGA
87476191 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
87476206 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
87476220 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
87476235 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
87476251 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
87476266 ATA
1 ATA
87476269 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:87479237 original size:47 final size:47
Alignment explanation
Indices: 87479168--87479344 Score: 220
Period size: 47 Copynumber: 3.8 Consensus size: 47
87479158 TGTAACCCGC
*
87479168 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCCGTTCGCAT
*
87479215 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCC--GTTCGCAT
* * * *
87479265 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCCGTTCGCAT
87479308 CCATAAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAA-GTGAACTCGGACTCAACTCAACGAGTTCGG
87479345 ATGCTCAACC
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 1 0.01
47 87 0.78
48 3 0.03
49 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCCGTTCGCAT
Found at i:87479290 original size:94 final size:94
Alignment explanation
Indices: 87479176--87479348 Score: 303
Period size: 94 Copynumber: 1.8 Consensus size: 94
87479166 GCCCATAAGT
* *
87479176 GAACTCGGACTCAACTCAACGAGCTCGGGCCGTTCGCATCCATAA-GTGAACTCGGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGGTGAACTCGGACTCAACTC
87479240 AACGAGTTCGGATGCCTAGTTACATCTCAC
65 AACGAGTTCGGATGCCTAGTTACATCTCAC
*
87479270 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGTGAACTCGGACTCAACTCA
87479335 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
87479349 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 16 0.21
94 59 0.79
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (94 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:87480940 original size:12 final size:12
Alignment explanation
Indices: 87480899--87480940 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
87480889 TTAAATAGAA
87480899 ATGAATGAAATT
1 ATGAATGAAATT
*
87480911 ATCAAT-AAATT
1 ATGAATGAAATT
* *
87480922 TTGAATGATATT
1 ATGAATGAAATT
87480934 ATGAATG
1 ATGAATG
87480941 TTTATTTAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.45, C:0.02, G:0.14, T:0.38
Consensus pattern (12 bp):
ATGAATGAAATT
Found at i:87482298 original size:24 final size:24
Alignment explanation
Indices: 87482283--87482334 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
87482273 AATCAAAGTC
87482283 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
87482307 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
87482331 AAAT
1 AAAT
87482335 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Done.