Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 269 of 343
Found at i:89141688 original size:17 final size:19
Alignment explanation
Indices: 89141666--89141703 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
89141656 CTGGGGAAAG
89141666 AAGAAAG-A-AAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
89141683 AAGAAAGAAGAAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
89141702 AA
1 AA
89141704 TTTAAGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAAAAGAGAA
Found at i:89141694 original size:12 final size:12
Alignment explanation
Indices: 89141661--89141698 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
89141651 CGAAACTGGG
89141661 GAAAGAAG-AAA
1 GAAAGAAGAAAA
*
89141672 GAAAAAGAGAAAA
1 GAAAGA-AGAAAA
89141685 GAAAGAAGAAAA
1 GAAAGAAGAAAA
89141697 GA
1 GA
89141699 GAAAATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 5 0.22
12 10 0.43
13 8 0.35
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
GAAAGAAGAAAA
Found at i:89158658 original size:22 final size:22
Alignment explanation
Indices: 89158633--89158674 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
89158623 CCATATGGTA
89158633 TTGGCTAATATTGGTTAAGTTG
1 TTGGCTAATATTGGTTAAGTTG
89158655 TTGGCTAATATTGGTTAAGT
1 TTGGCTAATATTGGTTAAGT
89158675 ATATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.05, G:0.26, T:0.45
Consensus pattern (22 bp):
TTGGCTAATATTGGTTAAGTTG
Found at i:89170856 original size:23 final size:24
Alignment explanation
Indices: 89170830--89170884 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
89170820 AATATAAAAA
*
89170830 AAATAAGAAAATA-AGAATTTTTT
1 AAATAAAAAAATACAGAATTTTTT
* **
89170853 AAATAAAAAAATACATAATTTTCA
1 AAATAAAAAAATACAGAATTTTTT
89170877 AAATAAAA
1 AAATAAAA
89170885 GTTTTACGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 12 0.44
24 15 0.56
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (24 bp):
AAATAAAAAAATACAGAATTTTTT
Found at i:89176203 original size:49 final size:48
Alignment explanation
Indices: 89176145--89176275 Score: 140
Period size: 49 Copynumber: 2.7 Consensus size: 48
89176135 TGTTGTGTGT
* *
89176145 CAATGTAAGACCTGTCTAGGACATGGCATCGACACT-GTTAGATGAGAGC
1 CAATGTAAGACCTGTCT-GGACATGGCATCGAC-CTCGATAGATGAAAGC
** * * *
89176194 CAATGTAAGACCTGTCTGGGACATGAAATCGGCCTCGATATATGAAAGT
1 CAATGTAAGACCTGTCT-GGACATGGCATCGACCTCGATAGATGAAAGC
89176243 CAGA-GTAAGACCTGTCTGGAACATGGCATCGAC
1 CA-ATGTAAGACCTGTCTGG-ACATGGCATCGAC
89176276 TTTAATGTGC
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
48 4 0.06
49 63 0.93
50 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (48 bp):
CAATGTAAGACCTGTCTGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:89177532 original size:21 final size:20
Alignment explanation
Indices: 89177500--89177539 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
89177490 GTCATAATGG
89177500 CCACAAGAACGTGTTGCCTTT
1 CCACAAGAACGTG-TGCCTTT
89177521 CCACACAG-ACGTGTGCCTT
1 CCACA-AGAACGTGTGCCTT
89177540 GCTTCAAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 10 0.56
22 2 0.11
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.25
Consensus pattern (20 bp):
CCACAAGAACGTGTGCCTTT
Found at i:89183970 original size:23 final size:21
Alignment explanation
Indices: 89183932--89183976 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 21
89183922 ATGTTTAAAA
89183932 ATAATATAAAAATAATAATAC
1 ATAATATAAAAATAATAATAC
89183953 ATAATATTAAAAACTAATAATAC
1 ATAATA-TAAAAA-TAATAATAC
89183976 A
1 A
89183977 ATTCATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 6 0.27
22 6 0.27
23 10 0.45
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (21 bp):
ATAATATAAAAATAATAATAC
Found at i:89184977 original size:10 final size:10
Alignment explanation
Indices: 89184962--89184987 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
89184952 ACCTGCAAGA
89184962 AAAGAAGCAG
1 AAAGAAGCAG
89184972 AAAGAAGCAG
1 AAAGAAGCAG
89184982 AAAGAA
1 AAAGAA
89184988 CCAAACAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.08, G:0.27, T:0.00
Consensus pattern (10 bp):
AAAGAAGCAG
Found at i:89187401 original size:12 final size:11
Alignment explanation
Indices: 89187386--89187459 Score: 53
Period size: 12 Copynumber: 6.3 Consensus size: 11
89187376 AATGGAAAAC
89187386 TAAAAGTAATAA
1 TAAAA-TAATAA
89187398 TAAAATTAATGAAA
1 TAAAA-TAAT--AA
89187412 TAACAATAATAA
1 TAA-AATAATAA
89187424 TCAAAATAATAA
1 T-AAAATAATAA
* *
89187436 -AACA-CATAA
1 TAAAATAATAA
89187445 TAAGAATAATAA
1 TAA-AATAATAA
89187457 TAA
1 TAA
89187460 GCAGAAAATG
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
9 4 0.08
10 5 0.10
11 1 0.02
12 27 0.54
13 2 0.04
14 9 0.18
15 2 0.04
ACGTcount: A:0.66, C:0.05, G:0.04, T:0.24
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:89187460 original size:12 final size:12
Alignment explanation
Indices: 89187413--89187480 Score: 52
Period size: 12 Copynumber: 5.7 Consensus size: 12
89187403 TTAATGAAAT
*
89187413 AACAATAATAATC
1 AACAATAATAA-G
89187426 AA-AATAATAA-
1 AACAATAATAAG
89187436 AACACATAATAAG
1 AACA-ATAATAAG
*
89187449 AATAATAATAAG
1 AACAATAATAAG
* *
89187461 CAGAA-AATGAAG
1 AACAATAAT-AAG
89187473 AACAATAA
1 AACAATAA
89187481 AAATAACAGC
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
10 2 0.04
11 4 0.09
12 32 0.71
13 7 0.16
ACGTcount: A:0.66, C:0.09, G:0.07, T:0.18
Consensus pattern (12 bp):
AACAATAATAAG
Found at i:89187563 original size:31 final size:32
Alignment explanation
Indices: 89187523--89187657 Score: 102
Period size: 31 Copynumber: 4.2 Consensus size: 32
89187513 AAGCTAGTGC
*
89187523 AAAAAATAATAATAATAGGAAAA-ATAATAAG
1 AAAAAATAATAATAATAAGAAAATATAATAAG
* *
89187554 AAAATATAATAATATTAAGAAAATATAATAAAAG
1 AAAAAATAATAATAATAAGAAAATATAAT--AAG
* *
89187588 TAAAAATAA-AATAATAA-AAAATAAAATAGTAGG
1 AAAAAATAATAATAATAAGAAAATATAATA--A-G
*
89187621 AAAATAA-AATAAGGAATAA-AAAATA-AATAAAG
1 AAAA-AATAATAA-TAATAAGAAAATATAAT-AAG
89187653 AAAAA
1 AAAAA
89187658 GGGTAAATGG
Statistics
Matches: 85, Mismatches: 9, Indels: 20
0.75 0.08 0.18
Matches are distributed among these distances:
30 1 0.01
31 21 0.25
32 20 0.24
33 14 0.16
34 17 0.20
35 12 0.14
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (32 bp):
AAAAAATAATAATAATAAGAAAATATAATAAG
Found at i:89187566 original size:16 final size:16
Alignment explanation
Indices: 89187543--89187632 Score: 85
Period size: 15 Copynumber: 5.4 Consensus size: 16
89187533 AATAATAGGA
89187543 AAAATAATAAGAAAATAT
1 AAAATAATAAG-AAA-AT
*
89187561 AATAATATTAAGAAAAT
1 AA-AATAATAAGAAAAT
*
89187578 ATAATAA-AAGTAAAAAT
1 AAAATAATAAG--AAAAT
89187595 AAAATAATAA-AAAAT
1 AAAATAATAAGAAAAT
* *
89187610 AAAATAGTAGGAAAAT
1 AAAATAATAAGAAAAT
89187626 AAAATAA
1 AAAATAA
89187633 GGAATAAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
15 16 0.27
16 15 0.25
17 14 0.23
18 7 0.12
19 8 0.13
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (16 bp):
AAAATAATAAGAAAAT
Found at i:89187572 original size:19 final size:19
Alignment explanation
Indices: 89187545--89187604 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
89187535 TAATAGGAAA
89187545 AATAATAAGAAAATATAAT
1 AATAATAAGAAAATATAAT
*
89187564 AATATTAAGAAAATATAAT
1 AATAATAAGAAAATATAAT
*
89187583 AA-AAGT-A-AAAATAAAAT
1 AATAA-TAAGAAAATATAAT
89187600 AATAA
1 AATAA
89187605 AAAATAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 11 0.31
18 4 0.11
19 21 0.58
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (19 bp):
AATAATAAGAAAATATAAT
Found at i:89187577 original size:48 final size:48
Alignment explanation
Indices: 89187525--89187657 Score: 128
Period size: 48 Copynumber: 2.7 Consensus size: 48
89187515 GCTAGTGCAA
* * *
89187525 AAAATAATAATAATAGGAAAAAT-AATAAGAAAATATAATAATATTAAG
1 AAAATAATAATAAAAGGAAAAATAAATAAGAAAAAATAA-AATAGTAAG
* * *
89187573 AAAAT-ATAATAAAAGTAAAAATAAAATAATAAAAAATAAAATAGTAGG
1 AAAATAATAATAAAAGGAAAAAT-AAATAAGAAAAAATAAAATAGTAAG
**
89187621 AAAATAA-AATAAGGAATAAAAAATAAATAAAGAAAAA
1 AAAATAATAATAA--AAGGAAAAATAAAT-AAGAAAAA
89187658 GGGTAAATGG
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
47 15 0.21
48 22 0.31
49 18 0.26
50 15 0.21
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.20
Consensus pattern (48 bp):
AAAATAATAATAAAAGGAAAAATAAATAAGAAAAAATAAAATAGTAAG
Found at i:89188734 original size:27 final size:26
Alignment explanation
Indices: 89188699--89188810 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 26
89188689 AACATGGCTG
* *
89188699 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
89188725 CCAGATACAGATACTCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
89188753 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
89188780 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
89188808 CCA
1 CCA
89188811 AGACGCTTCC
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.08
27 37 0.51
28 30 0.41
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:89190254 original size:24 final size:24
Alignment explanation
Indices: 89190227--89190297 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
89190217 CTAGATTTCC
**
89190227 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
89190251 TCCCTTATCAACTCCTAAATCTTA
1 TCCCTTATCAACTCCTAAATCCTA
89190275 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
89190298 CTCCTGACAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:89196619 original size:27 final size:26
Alignment explanation
Indices: 89196547--89196621 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
89196537 AGCATGGTTG
** **
89196547 CCAGAACAGATAATGTGAAAGAGTCA
1 CCAGAACAGATAATGTGGCAGAACCA
89196573 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAACCA
89196601 CCAGAACAGATATATGTGGCA
1 CCAGAACAGATA-ATGTGGCA
89196622 AAGCCATCAT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
26 5 0.12
27 22 0.52
28 15 0.36
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAACCA
Found at i:89207019 original size:29 final size:28
Alignment explanation
Indices: 89206936--89207040 Score: 90
Period size: 29 Copynumber: 3.7 Consensus size: 28
89206926 TGAGGCCTGA
* * *
89206936 ATAT-AATGTGACTTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCC-TAAGGGCC
*
89206964 ATATTAA--TGATATTGGGCCTAATGGGCC
1 ATATGAATGTGA-ATTGGGCCTAA-GGGCC
89206992 ATATGAATGTGAATTGGGCCTCAAGGGCC
1 ATATGAATGTGAATTGGGCCT-AAGGGCC
* **
89207021 ATTTGAACATGAATTGGGCC
1 ATATGAATGTGAATTGGGCC
89207041 GGATTGGCCA
Statistics
Matches: 64, Mismatches: 7, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
27 4 0.06
28 22 0.34
29 33 0.52
30 5 0.08
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGAATTGGGCCTAAGGGCC
Found at i:89207049 original size:29 final size:28
Alignment explanation
Indices: 89206948--89207059 Score: 86
Period size: 29 Copynumber: 4.0 Consensus size: 28
89206938 ATAATGTGAC
89206948 TTGGGCCGGATGGGCCATATT--AATGATA
1 TTGGGCCGGATGGGCCAT-TTGAAATGA-A
** * *
89206976 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCGGATGGGCCATTTGAA-ATGAA
** *
89207005 TTGGGCCTCAAGGGCCATTTGAACATGAA
1 TTGGGCCGGATGGGCCATTTGAA-ATGAA
* *
89207034 TTGGGCCGGATTGGCCATAT-AAATGA
1 TTGGGCCGGATGGGCCATTTGAAATGA
89207060 GACCGGGCCT
Statistics
Matches: 67, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
27 5 0.07
28 18 0.27
29 41 0.61
30 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (28 bp):
TTGGGCCGGATGGGCCATTTGAAATGAA
Found at i:89211026 original size:16 final size:16
Alignment explanation
Indices: 89210988--89211026 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
89210978 GTAGATCGGT
* *
89210988 AAAAGCCAAAATACCG
1 AAAAGCTAAAATACCA
*
89211004 AAAAGCTAAAATGCCA
1 AAAAGCTAAAATACCA
89211020 AAAAGCT
1 AAAAGCT
89211027 GAAAGTTTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.56, C:0.21, G:0.13, T:0.10
Consensus pattern (16 bp):
AAAAGCTAAAATACCA
Found at i:89211273 original size:28 final size:29
Alignment explanation
Indices: 89211242--89211393 Score: 96
Period size: 29 Copynumber: 5.3 Consensus size: 29
89211232 GTGAGCATGA
*
89211242 ATAT-AATGTGATTTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCGGATGGGCC
* * ** * **
89211270 ATATAAATGAG-ATTGGGCCTAATAGGTT
1 ATATGAATGTGAATTGGGCCGGATGGGCC
* ** *
89211298 ATATGAATGTGAATTGGGTCTCAAGGGCC
1 ATATGAATGTGAATTGGGCCGGATGGGCC
* * *
89211327 ATATGAACGTGAATTAGGCCGGATGGGCT
1 ATATGAATGTGAATTGGGCCGGATGGGCC
* * *
89211356 ATATAAATGAGAA-TGGGCC-TAGTGGGCC
1 ATATGAATGTGAATTGGGCCGGA-TGGGCC
*
89211384 ATATGCATGT
1 ATATGAATGT
89211394 ATGTAGGGGT
Statistics
Matches: 90, Mismatches: 31, Indels: 6
0.71 0.24 0.05
Matches are distributed among these distances:
27 1 0.01
28 41 0.46
29 48 0.53
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCGGATGGGCC
Found at i:89216230 original size:31 final size:31
Alignment explanation
Indices: 89216164--89216230 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
89216154 ATGCGACCCT
* * **
89216164 TGGCTTACTAGTGTGGGTCCACATGCCTGTG
1 TGGCTTACCAGTGTGGGCCCACATGCCTGCA
89216195 TGGCTTACCAGTGTGGGCCCACACT-CCTGCA
1 TGGCTTACCAGTGTGGGCCCACA-TGCCTGCA
89216226 TGGCT
1 TGGCT
89216231 CACACACTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.13, C:0.28, G:0.30, T:0.28
Consensus pattern (31 bp):
TGGCTTACCAGTGTGGGCCCACATGCCTGCA
Found at i:89220403 original size:16 final size:18
Alignment explanation
Indices: 89220384--89220421 Score: 55
Period size: 15 Copynumber: 2.3 Consensus size: 18
89220374 ATATTCTCAT
89220384 TTTTTTCA-TTTCT-TCC
1 TTTTTTCATTTTCTCTCC
89220400 -TTTTTCATTTTCTCTCC
1 TTTTTTCATTTTCTCTCC
89220417 TTTTT
1 TTTTT
89220422 GACAAACAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.37
16 5 0.26
17 3 0.16
18 4 0.21
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTTCATTTTCTCTCC
Found at i:89220405 original size:15 final size:17
Alignment explanation
Indices: 89220385--89220421 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
89220375 TATTCTCATT
89220385 TTTTTCA-TTTCT-TCC
1 TTTTTCATTTTCTCTCC
89220400 TTTTTCATTTTCTCTCC
1 TTTTTCATTTTCTCTCC
89220417 TTTTT
1 TTTTT
89220422 GACAAACAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 7 0.35
16 5 0.25
17 8 0.40
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTCATTTTCTCTCC
Found at i:89224208 original size:24 final size:24
Alignment explanation
Indices: 89224178--89224226 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
89224168 TGATTGCCAG
89224178 TGAATTTATTTCC-GATGATTGTTA
1 TGAATTTATTTCCAG-TGATTGTTA
89224202 TGAATTTATTTCCAGTGATTGTTA
1 TGAATTTATTTCCAGTGATTGTTA
89224226 T
1 T
89224227 AAAAATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.51
Consensus pattern (24 bp):
TGAATTTATTTCCAGTGATTGTTA
Found at i:89233506 original size:18 final size:19
Alignment explanation
Indices: 89233473--89233509 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
89233463 ACTGTTGCAC
89233473 ATGAATGGATTAGTTACAT
1 ATGAATGGATTAGTTACAT
89233492 ATGAATGGA-TAGTTACAT
1 ATGAATGGATTAGTTACAT
89233510 GTTAAGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35
Consensus pattern (19 bp):
ATGAATGGATTAGTTACAT
Found at i:89234044 original size:32 final size:32
Alignment explanation
Indices: 89234003--89234065 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
89233993 TGTTAAATGA
* *
89234003 ACAAATTTGACGAGGAAGATTCGACAACTTTG
1 ACAAATTTGACAAGGAAGATTCAACAACTTTG
*
89234035 ACAAATTTGACAAGGAAGATTCAACATCTTT
1 ACAAATTTGACAAGGAAGATTCAACAACTTT
89234066 AAAATGTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (32 bp):
ACAAATTTGACAAGGAAGATTCAACAACTTTG
Found at i:89234172 original size:69 final size:69
Alignment explanation
Indices: 89234061--89234658 Score: 860
Period size: 69 Copynumber: 8.7 Consensus size: 69
89234051 AGATTCAACA
*
89234061 TCTTTAAAATGTGTTCATTTACGTTCTATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
89234126 GTAG
66 GTAG
* *
89234130 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGTTGTAAAGGGCTGATAT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
89234195 GTAG
66 GTAG
* * * * *
89234199 TCTTTAAAATGTGTTCATTTACATTCGTTTTAAATGCTTAAGGTGCTACTATAAAGGGCTGA-TT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
89234263 GTAG
66 GTAG
* * * *
89234267 TCTTTAAAATGTGTTAATCTACATTCGATTTAAATGCTTAATGTGCTACTGTAAAGGGCTGATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
89234332 GTAG
66 GTAG
* * * * *
89234336 TCTTTAAAATGAGTTCGTTTACGGTCGATTCAAGTGCTTAATGTGCTGCTGTAAAGGGCTGATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
89234401 GTAG
66 GTAG
* *
89234405 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGTTTAATGTGCTACTGTAAAGGGCTGATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
89234470 GTAG
66 GTAG
* ** *
89234474 TCTTTAAAATGTGTTAATTTAAATTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTAATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
*
89234539 GTAT
66 GTAG
* * * * * * *
89234543 TCTTTAAAATGTGTTCATTTACATTCGATTTAAGTTCTTAATGAGTTGTTGTATAGGGCTGATTT
1 TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
*
89234608 GTTG
66 GTAG
*
89234612 TC-TTAAAACTGTGTTCATTAACGTTC-ATTTTAAATGCTTAATGTGCT
1 TCTTTAAAA-TGTGTTCATTTACGTTCGA-TTTAAATGCTTAATGTGCT
89234659 TTTCAAAAAT
Statistics
Matches: 471, Mismatches: 55, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
68 69 0.15
69 402 0.85
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (69 bp):
TCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
GTAG
Found at i:89234415 original size:206 final size:207
Alignment explanation
Indices: 89234061--89234658 Score: 921
Period size: 206 Copynumber: 2.9 Consensus size: 207
89234051 AGATTCAACA
* * *
89234061 TCTTTAAAATGTGTTCATTTACGTTCTATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
1 TCTTTAAAATGTGTTAATTTACATTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
*
89234126 GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGTTGTAAAGGGCTG
66 GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAGTGCTTAATGTGCTGTTGTAAAGGGCTG
* * *
89234191 ATATGTAGTCTTTAAAATGTGTTCATTTACATTCGTTTTAAATGCTTAAGGTGCTACTATAAAGG
131 ATTTGTAGTCTTTAAAATGTGTTCATTTACGTTCGTTTTAAATGCTTAATGTGCTACTATAAAGG
89234256 GCTGA-TTGTAG
196 GCTGATTTGTAG
* *
89234267 TCTTTAAAATGTGTTAATCTACATTCGATTTAAATGCTTAATGTGCTACTGTAAAGGGCTGATTT
1 TCTTTAAAATGTGTTAATTTACATTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
* * * * *
89234332 GTAGTCTTTAAAATGAGTTCGTTTACGGTCGATTCAAGTGCTTAATGTGCTGCTGTAAAGGGCTG
66 GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAGTGCTTAATGTGCTGTTGTAAAGGGCTG
* * *
89234397 ATTTGTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGTTTAATGTGCTACTGTAAAGG
131 ATTTGTAGTCTTTAAAATGTGTTCATTTACGTTCGTTTTAAATGCTTAATGTGCTACTATAAAGG
89234462 GCTGATTTGTAG
196 GCTGATTTGTAG
* *
89234474 TCTTTAAAATGTGTTAATTTAAATTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTAATTT
1 TCTTTAAAATGTGTTAATTTACATTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
* * * * * *
89234539 GTATTCTTTAAAATGTGTTCATTTACATTCGATTTAAGTTCTTAATGAGTTGTTGTATAGGGCTG
66 GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAGTGCTTAATGTGCTGTTGTAAAGGGCTG
* * *
89234604 ATTTGTTGTC-TTAAAACTGTGTTCATTAACGTTCATTTTAAATGCTTAATGTGCT
131 ATTTGTAGTCTTTAAAA-TGTGTTCATTTACGTTCGTTTTAAATGCTTAATGTGCT
89234659 TTTCAAAAAT
Statistics
Matches: 353, Mismatches: 37, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
206 189 0.54
207 164 0.46
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (207 bp):
TCTTTAAAATGTGTTAATTTACATTCGATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAGTGCTTAATGTGCTGTTGTAAAGGGCTG
ATTTGTAGTCTTTAAAATGTGTTCATTTACGTTCGTTTTAAATGCTTAATGTGCTACTATAAAGG
GCTGATTTGTAG
Found at i:89234439 original size:275 final size:276
Alignment explanation
Indices: 89234061--89234658 Score: 869
Period size: 275 Copynumber: 2.2 Consensus size: 276
89234051 AGATTCAACA
* * * *
89234061 TCTTTAAAATGTGTTCATTTACGTTCTATTTAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
1 TCTTTAAAATGAGTTCATTTACGGTCGATTCAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
**
89234126 GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTGTTGTAAAGGGCTG
66 GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTACTGTAAAGGGCTG
* * *
89234191 ATATGTAGTCTTTAAAATGTGTTCATTTACATTCGTTTTAAATGCTTAAGGTGCTACTATAAAGG
131 ATATGTAGTCTTTAAAATGTGTTAATTTAAATTCGATTTAAATGCTTAAGGTGCTACTATAAAGG
* *
89234256 GCTGA-TTGTAGTCTTTAAAATGTGTTAATCTACATTCGATTTAAATGCTTAATGTGCTACTGTA
196 GCTAATTTGTAGTCTTTAAAATGTGTTAATCTACATTCGATTTAAATGCTTAATGAGCTACTGTA
89234320 AAGGGCTGATTTGTAG
261 AAGGGCTGATTTGTAG
* *
89234336 TCTTTAAAATGAGTTCGTTTACGGTCGATTCAAGTGCTTAATGTGCTGCTGTAAAGGGCTGATTT
1 TCTTTAAAATGAGTTCATTTACGGTCGATTCAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
*
89234401 GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGTTTAATGTGCTACTGTAAAGGGCTG
66 GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTACTGTAAAGGGCTG
* * * *
89234466 ATTTGTAGTCTTTAAAATGTGTTAATTTAAATTCGATTTAAATGCTTAATGTGCTGCTGTAAAGG
131 ATATGTAGTCTTTAAAATGTGTTAATTTAAATTCGATTTAAATGCTTAAGGTGCTACTATAAAGG
* * * * * * **
89234531 GCTAATTTGTATTCTTTAAAATGTGTTCATTTACATTCGATTTAAGTTCTTAATGAGTTGTTGTA
196 GCTAATTTGTAGTCTTTAAAATGTGTTAATCTACATTCGATTTAAATGCTTAATGAGCTACTGTA
* *
89234596 TAGGGCTGATTTGTTG
261 AAGGGCTGATTTGTAG
* * * *
89234612 TC-TTAAAACTGTGTTCATTAACGTTC-ATTTTAAATGCTTAATGTGCT
1 TCTTTAAAA-TGAGTTCATTTACGGTCGA-TTCAAATGCTTAATGTGCT
89234659 TTTCAAAAAT
Statistics
Matches: 286, Mismatches: 34, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
275 190 0.66
276 96 0.34
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (276 bp):
TCTTTAAAATGAGTTCATTTACGGTCGATTCAAATGCTTAATGTGCTGCTGTAAAGGGCTGATTT
GTAGTCTTTAAAATGTGTTCATTTACGTTCGATTTAAATGCTTAATGTGCTACTGTAAAGGGCTG
ATATGTAGTCTTTAAAATGTGTTAATTTAAATTCGATTTAAATGCTTAAGGTGCTACTATAAAGG
GCTAATTTGTAGTCTTTAAAATGTGTTAATCTACATTCGATTTAAATGCTTAATGAGCTACTGTA
AAGGGCTGATTTGTAG
Found at i:89234504 original size:35 final size:35
Alignment explanation
Indices: 89234396--89234504 Score: 80
Period size: 35 Copynumber: 3.1 Consensus size: 35
89234386 GTAAAGGGCT
* **
89234396 GATTTGTAGTCTTTAAAATGTGTTCATTTACGTTC
1 GATTTGTAGTCTTTAAAATGTGTTAATTTAAATTC
* * * * * * **
89234431 GATTT-AAATGTTT--AATGTGCTACTGTAAAGGGC
1 GATTTGTAGTCTTTAAAATGTGTTAATTTAAA-TTC
89234464 TGATTTGTAGTCTTTAAAATGTGTTAATTTAAATTC
1 -GATTTGTAGTCTTTAAAATGTGTTAATTTAAATTC
89234500 GATTT
1 GATTT
89234505 AAATGCTTAA
Statistics
Matches: 50, Mismatches: 19, Indels: 10
0.63 0.24 0.13
Matches are distributed among these distances:
32 10 0.20
33 1 0.02
34 10 0.20
35 15 0.30
36 1 0.02
37 13 0.26
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (35 bp):
GATTTGTAGTCTTTAAAATGTGTTAATTTAAATTC
Found at i:89242852 original size:6 final size:6
Alignment explanation
Indices: 89242833--89242865 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
89242823 GGATAGCAAT
*
89242833 TTTCCA TTTTCA TTTCCA TTTCCA TTTCCA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTT
89242866 TTATAAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (6 bp):
TTTCCA
Found at i:89262044 original size:16 final size:16
Alignment explanation
Indices: 89262023--89262060 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
89262013 GAAAAAAATC
*
89262023 TTATTTTATTCTT-ATT
1 TTATTTCATT-TTGATT
89262039 TTATTTCATTTTGATT
1 TTATTTCATTTTGATT
89262055 TTATTT
1 TTATTT
89262061 AAATTAGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (16 bp):
TTATTTCATTTTGATT
Found at i:89265048 original size:41 final size:40
Alignment explanation
Indices: 89264945--89265123 Score: 204
Period size: 40 Copynumber: 4.5 Consensus size: 40
89264935 AAACCAAGTA
* * *
89264945 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
** *
89264984 CCTTCGAAACTTAGCTCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
89265024 CCTTCGGGACTTTAGCCCGGATATAGTAACGCGCACAAATG
1 CCTTCGGGAC-TTAGCCCGGATATAGTAACTCACACAAATG
* *
89265065 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
89265105 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
89265124 TTATCATCCG
Statistics
Matches: 119, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 13 0.11
40 70 0.59
41 36 0.30
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:89265078 original size:81 final size:81
Alignment explanation
Indices: 89264945--89265123 Score: 226
Period size: 81 Copynumber: 2.2 Consensus size: 81
89264935 AAACCAAGTA
* * *
89264945 CCTTCGGGA-TTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGAAACTTAGCTCGG-ATAT
1 CCTTCGGGACTTTAGCCCGGATATAGCTACGCGCACAAATGCCTTCGAAACTTAGCCCGGAAT-T
89265007 AGTAACTCA-CACAAATG
65 AGTAACT-AGCACAAATG
***
89265024 CCTTCGGGACTTTAGCCCGGATATAG-TAACGCGCACAAATGCCTTCGGGGCTTAGCCCGGAATT
1 CCTTCGGGACTTTAGCCCGGATATAGCT-ACGCGCACAAATGCCTTCGAAACTTAGCCCGGAATT
*
89265088 AGTCACTAGCACAAATG
65 AGTAACTAGCACAAATG
89265105 CCTTCGGGAC-TTAGCCCGG
1 CCTTCGGGACTTTAGCCCGG
89265124 TTATCATCCG
Statistics
Matches: 88, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
79 9 0.10
80 16 0.18
81 61 0.69
82 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
CCTTCGGGACTTTAGCCCGGATATAGCTACGCGCACAAATGCCTTCGAAACTTAGCCCGGAATTA
GTAACTAGCACAAATG
Found at i:89272914 original size:40 final size:40
Alignment explanation
Indices: 89272844--89273021 Score: 247
Period size: 40 Copynumber: 4.5 Consensus size: 40
89272834 AAACCAAGTA
*
89272844 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGC-CGAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCAC-AAATG
*
89272883 CCTTCGGGACTTAGCCCGGATATGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
89272923 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
89272963 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
89273003 CCTTCGGGAGTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
89273022 TTATCATCTG
Statistics
Matches: 127, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
39 15 0.12
40 111 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:89295336 original size:12 final size:12
Alignment explanation
Indices: 89295319--89295351 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
89295309 GTAGAAGACA
89295319 TTATGGATGTAT
1 TTATGGATGTAT
89295331 TTATGGATGTAT
1 TTATGGATGTAT
89295343 TTATGGATG
1 TTATGGATG
89295352 ACTTCTCGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.48
Consensus pattern (12 bp):
TTATGGATGTAT
Found at i:89298061 original size:8 final size:9
Alignment explanation
Indices: 89298040--89298072 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
89298030 TCTTCCTCCC
*
89298040 TTATTAATT
1 TTATTTATT
89298049 TTATTTA-T
1 TTATTTATT
89298057 TTATTTATT
1 TTATTTATT
89298066 TTATTTA
1 TTATTTA
89298073 CTTCTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (9 bp):
TTATTTATT
Found at i:89298066 original size:17 final size:17
Alignment explanation
Indices: 89298040--89298072 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
89298030 TCTTCCTCCC
89298040 TTATTAATTTTATTTAT
1 TTATTAATTTTATTTAT
*
89298057 TTATTTATTTTATTTA
1 TTATTAATTTTATTTA
89298073 CTTCTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTATTAATTTTATTTAT
Found at i:89298089 original size:9 final size:9
Alignment explanation
Indices: 89298077--89298179 Score: 50
Period size: 9 Copynumber: 11.1 Consensus size: 9
89298067 TATTTACTTC
89298077 TTTTATTAT
1 TTTTATTAT
89298086 TTTTATTAT
1 TTTTATTAT
89298095 TTTTAATATCAT
1 TTTT-AT-T-AT
* *
89298107 TATTATGAT
1 TTTTATTAT
* **
89298116 TTACCTAGCAT
1 TT--TTATTAT
*
89298127 TTCTATTAT
1 TTTTATTAT
*
89298136 TATTATTA-
1 TTTTATTAT
*
89298144 TTTTACT-T
1 TTTTATTAT
89298152 TTTTATTAT
1 TTTTATTAT
*
89298161 TTTAATT-T
1 TTTTATTAT
89298169 TTCTTATTAT
1 TT-TTATTAT
89298179 T
1 T
89298180 ATTAGTAGTA
Statistics
Matches: 70, Mismatches: 15, Indels: 17
0.69 0.15 0.17
Matches are distributed among these distances:
8 14 0.20
9 38 0.54
10 4 0.06
11 9 0.13
12 5 0.07
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTTATTAT
Found at i:89298159 original size:16 final size:16
Alignment explanation
Indices: 89298138--89298170 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
89298128 TCTATTATTA
*
89298138 TTATTATTTTACTTTT
1 TTATTATTTTAATTTT
89298154 TTATTATTTTAATTTT
1 TTATTATTTTAATTTT
89298170 T
1 T
89298171 CTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTATTTTAATTTT
Found at i:89298175 original size:15 final size:16
Alignment explanation
Indices: 89298138--89298176 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
89298128 TCTATTATTA
*
89298138 TTATTATTTTACTTTT
1 TTATTATTTTACATTT
89298154 TTATTATTTTA-ATTT
1 TTATTATTTTACATTT
*
89298169 TTCTTATT
1 TTATTATT
89298177 ATTATTAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTATTTTACATTT
Found at i:89301120 original size:25 final size:25
Alignment explanation
Indices: 89301071--89301121 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
89301061 CCCTTATAAT
* * *
89301071 GTGAAAATGACCTTTTTGCCACTAG
1 GTGAAAATGACCATTATACCACTAG
*
89301096 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATGACCATTATACCACTAG
89301121 G
1 G
89301122 GTTATGTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCACTAG
Found at i:89308923 original size:25 final size:25
Alignment explanation
Indices: 89308895--89308945 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
89308885 CCCTTATAAT
* * *
89308895 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
89308920 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
89308945 G
1 G
89308946 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCCTAG
Found at i:89324822 original size:50 final size:50
Alignment explanation
Indices: 89324768--89325003 Score: 296
Period size: 50 Copynumber: 4.7 Consensus size: 50
89324758 ATGGTATGCA
* *
89324768 TAGTAGCCTGCAGTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
* * * *
89324818 TAGTAGCCTGCACTTAGTAATACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
* * * * * *
89324868 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATC-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CAATCTG-GTACACG
* *
89324919 TAGTAGCCTGCACTTAGTATTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
**
89324969 TAGTAGCCTG-ACTTAGTACTACACACATGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
89325004 AACTGTCTTA
Statistics
Matches: 158, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
49 21 0.13
50 97 0.61
51 40 0.25
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
Found at i:89324944 original size:101 final size:100
Alignment explanation
Indices: 89324768--89324994 Score: 305
Period size: 101 Copynumber: 2.3 Consensus size: 100
89324758 ATGGTATGCA
* * * *
89324768 TAGTAGCCTGCAGTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCGAACAATCTGGTACACATAGTAGCCTGCACTT
* *
89324833 AGTAATACACACGTGACCTAACCATCTGATACACG
66 AGTAATACACACGCGACCTAACAATCTGATACACG
* * * *
89324868 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATC-GAGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCGAA-CAATCTG-GTACACATAGTAGCCTGCAC
* * *
89324932 TTAGTATTACACATGCGACCTAACAATCTGGTACACG
64 TTAGTAATACACACGCGACCTAACAATCTGATACACG
89324969 TAGTAGCCTG-ACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
89324995 ATGACCTAAA
Statistics
Matches: 112, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
100 48 0.43
101 64 0.57
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCGAACAATCTGGTACACATAGTAGCCTGCACTT
AGTAATACACACGCGACCTAACAATCTGATACACG
Found at i:89325027 original size:51 final size:52
Alignment explanation
Indices: 89324768--89325044 Score: 259
Period size: 50 Copynumber: 5.5 Consensus size: 52
89324758 ATGGTATGCA
* * * * *
89324768 TAGTAGCCTGCAGTTAGTACTACACATGCGACCT--AACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTATCTGATACACG
* *
89324818 TAGTAGCCTGCACTTAGTAATACACACGTGACCT--AACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTATCTGATACACG
* * * * *
89324868 TAGTAGCCTGCACTTAGTACTACACACGTGATC-GAAGCTATC-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTATCTGA-TACACG
* * * * *
89324919 TAGTAGCCTGCACTTAGTATTACACATGCGACCT--AACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTATCTGATACACG
* * * * *
89324969 TAGTAGCCTG-ACTTAGTACTACACACATGACCTAAAACTGTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTATCTGATACACG
*
89325020 TAGTAGCCTGTA-TATAGTACTACAC
1 TAGTAGCCTGCACT-TAGTACTACAC
89325045 GTGTTCTCAA
Statistics
Matches: 187, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
49 19 0.10
50 96 0.51
51 60 0.32
52 12 0.06
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (52 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTATCTGATACACG
Found at i:89325044 original size:101 final size:101
Alignment explanation
Indices: 89324768--89325029 Score: 280
Period size: 101 Copynumber: 2.6 Consensus size: 101
89324758 ATGGTATGCA
* *** * * * *
89324768 TAGTAGCCTGCAGTTAGTACTACACATGCGACC-TAACAATCTG-GTACACGTAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACATGACCAAAACTATC-GAGAACACATAGTAGCCTGCAC
* *
89324831 TTAGTAATACACACGTGACCTAACCATCTGATACACG
65 TTAGTAATACACACGCGACCTAACAATCTGATACACG
* * * * * *
89324868 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGAGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACATGACCAAAACTATCGAGAACACATAGTAGCCTGCACT
* * *
89324933 TAGTATTACACATGCGACCTAACAATCTGGTACACG
66 TAGTAATACACACGCGACCTAACAATCTGATACACG
* *
89324969 TAGTAGCCTG-ACTTAGTACTACACACATGACCTAAAACTGTCTTA-AACACATAGTAGCCTG
1 TAGTAGCCTGCACTTAGTACTACACACATGACC-AAAACTATC-GAGAACACATAGTAGCCTG
89325030 TATATAGTAC
Statistics
Matches: 136, Mismatches: 22, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
100 50 0.37
101 85 0.62
102 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACATGACCAAAACTATCGAGAACACATAGTAGCCTGCACT
TAGTAATACACACGCGACCTAACAATCTGATACACG
Found at i:89328372 original size:10 final size:10
Alignment explanation
Indices: 89328357--89328390 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
89328347 GATTTATTTT
89328357 TTATCTTTAA
1 TTATCTTTAA
89328367 TTATCTTTAA
1 TTATCTTTAA
* *
89328377 TTATATTTAT
1 TTATCTTTAA
89328387 TTAT
1 TTAT
89328391 TTGTATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:89330806 original size:33 final size:33
Alignment explanation
Indices: 89330763--89330840 Score: 93
Period size: 33 Copynumber: 2.4 Consensus size: 33
89330753 AGCTAATATG
*
89330763 CTTGATTTCCAACAGTAGATACAACGACAAACT
1 CTTGATTTCCAACAGTAAATACAACGACAAACT
* * *** *
89330796 GTTGATTTCCAGCAGTAAATTTTATGACAAACT
1 CTTGATTTCCAACAGTAAATACAACGACAAACT
89330829 CTTGATTTCCAA
1 CTTGATTTCCAA
89330841 AAGGAAACAA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.32
Consensus pattern (33 bp):
CTTGATTTCCAACAGTAAATACAACGACAAACT
Found at i:89332245 original size:5 final size:5
Alignment explanation
Indices: 89332235--89332289 Score: 62
Period size: 5 Copynumber: 11.4 Consensus size: 5
89332225 TCATTATTTA
* *
89332235 TTATT TTATT TCATT TTATT TTA-- TTATT TTATT TTATT ATT-TA TTATT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT -TTATT TTATT
89332283 TTATT TT
1 TTATT TT
89332290 GGTTATTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
3 3 0.07
4 2 0.05
5 35 0.83
6 2 0.05
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (5 bp):
TTATT
Found at i:89332248 original size:20 final size:20
Alignment explanation
Indices: 89332223--89332288 Score: 96
Period size: 20 Copynumber: 3.1 Consensus size: 20
89332213 TTTTCTTAAT
89332223 TTTCATTATTTATTATTTTA
1 TTTCATTATTTATTATTTTA
89332243 TTTCATTTTATTTTATTATTTTA
1 TTTCA--TTA-TTTATTATTTTA
*
89332266 TTTTATTATTTATTATTTTA
1 TTTCATTATTTATTATTTTA
89332286 TTT
1 TTT
89332289 TGGTTATTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
20 20 0.48
21 3 0.07
22 3 0.07
23 16 0.38
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTCATTATTTATTATTTTA
Found at i:89332252 original size:10 final size:9
Alignment explanation
Indices: 89332199--89332288 Score: 59
Period size: 10 Copynumber: 10.3 Consensus size: 9
89332189 CAACCCAACC
*
89332199 TTTATTTTT
1 TTTATTTTA
*
89332208 TTTACTTTTC
1 TTTA-TTTTA
*
89332218 TTAATTTTCA
1 TTTATTTT-A
89332228 -TTA-TTTA
1 TTTATTTTA
89332235 -TTATTTTA
1 TTTATTTTA
89332243 TTTCATTTTA
1 TTT-ATTTTA
*
89332253 TTT-TATTA
1 TTTATTTTA
89332261 TTTTATTTTA
1 -TTTATTTTA
89332271 -TTA-TTTA
1 TTTATTTTA
89332278 -TTATTTTA
1 TTTATTTTA
89332286 TTT
1 TTT
89332289 TGGTTATTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
7 11 0.17
8 18 0.27
9 17 0.26
10 20 0.30
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTATTTTA
Found at i:89334341 original size:10 final size:10
Alignment explanation
Indices: 89334326--89334373 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
89334316 ATTTGTTTTT
89334326 TTATCTTTAA
1 TTATCTTTAA
89334336 TTATCTTTAA
1 TTATCTTTAA
* *
89334346 TTAACTTTAT
1 TTATCTTTAA
*
89334356 TTAT-TTGTAT
1 TTATCTT-TAA
89334366 TTATCTTT
1 TTATCTTT
89334374 TAGAATTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 2 0.06
10 29 0.88
11 2 0.06
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:89351781 original size:47 final size:47
Alignment explanation
Indices: 89351721--89351947 Score: 255
Period size: 49 Copynumber: 4.7 Consensus size: 47
89351711 TTAGGATTTT
* * * *
89351721 ATGTGATGGATGTGAATA-TGTATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
* * * *
89351768 ATGTGATGAATGTGAACA-TGCATTTGTGTGCTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
*
89351815 ATGTGATGAATGTGAAAGTGTATGCACATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCGAATGGCCA
89351864 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTA--TATATGTGATAAGGCCGAATGGCCA
* *
89351913 ATGTCATGGAA-GTGGAAGTGTATA-ACTGTGATAAG
1 ATGTGAT-GAATGTGAAAGTGTATATA-TGTGATAAG
89351948 TCCCGAAGAA
Statistics
Matches: 158, Mismatches: 15, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
46 2 0.01
47 71 0.45
49 81 0.51
50 3 0.02
51 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:89351867 original size:96 final size:96
Alignment explanation
Indices: 89351752--89351947 Score: 265
Period size: 96 Copynumber: 2.0 Consensus size: 96
89351742 ATATATGAGC
* *
89351752 TAAGGCCGAATGGCAAATGTGATGAATGTGAACA-TGCAT-T-TGTGTGCTAAGGCCGAATGGCC
1 TAAGGCCGAATGGCAAATGTGATGAATGTGAA-AGTGCATGTATATGTGATAAGGCCGAATGGCC
* *
89351814 AATGTGAT-GAATGTGAAAGTGTATGCACATGTGA
65 AATGTCATGGAA-GTGAAAGTGTAT-AAC-TGTGA
* *
89351848 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 TAAGGCCGAATGGCAAATGTGATGAATGTGAAAGTGCATGTATATGTGATAAGGCCGAATGGCCA
*
89351913 ATGTCATGGAAGTGGAAGTGTATAACTGTGA
66 ATGTCATGGAAGTGAAAGTGTATAACTGTGA
89351944 TAAG
1 TAAG
89351948 TCCCGAAGAA
Statistics
Matches: 89, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
95 1 0.01
96 44 0.49
97 3 0.03
98 38 0.43
99 3 0.03
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.26
Consensus pattern (96 bp):
TAAGGCCGAATGGCAAATGTGATGAATGTGAAAGTGCATGTATATGTGATAAGGCCGAATGGCCA
ATGTCATGGAAGTGAAAGTGTATAACTGTGA
Found at i:89354924 original size:17 final size:19
Alignment explanation
Indices: 89354902--89354942 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
89354892 GGTTCATTAT
89354902 TGATTTATAT-TT-TAATA
1 TGATTTATATATTATAATA
*
89354919 TGATTTATATATTATATTA
1 TGATTTATATATTATAATA
89354938 TGATT
1 TGATT
89354943 AATAAAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 2 0.10
19 9 0.43
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (19 bp):
TGATTTATATATTATAATA
Found at i:89355973 original size:50 final size:50
Alignment explanation
Indices: 89355896--89356134 Score: 255
Period size: 50 Copynumber: 4.7 Consensus size: 50
89355886 ACCGAAGCTC
* *
89355896 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * *
89355946 TTTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * * * * *
89355996 TCTGATACACGTAGTAGCCTTCACTCAGTACTACACATGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAA
* *
89356047 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
** * **
89356096 TCGTCTTAAACACATAGTAGCATGCAAATAGTACTACAC
1 TC-TGGT--ACACATAGTAGCCTGCACTTAGTACTACAC
89356135 GTGTTGTCAC
Statistics
Matches: 155, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 3 0.02
50 86 0.55
51 40 0.26
52 26 0.17
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:89356081 original size:101 final size:100
Alignment explanation
Indices: 89355907--89356093 Score: 284
Period size: 101 Copynumber: 1.9 Consensus size: 100
89355897 CTGGTACGCA
* * ** *
89355907 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATTTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTCAGTACTACACATGTGACCGAACAATCGGGTACACATAGTAGCCTGCACTT
89355972 AGTACTACACACGTGACCTAACCATCTGATACACG
66 AGTACTACACACGTGACCTAACCATCTGATACACG
* * * *
89356007 TAGTAGCCTTCACTCAGTACTACACATGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTCAGTACTACACATGTGACCGAA-CAATCGGGTACACATAGTAGCCTGCACT
89356072 TAGTACTACACACGTGACCTAA
65 TAGTACTACACACGTGACCTAA
89356094 AATCGTCTTA
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 32 0.42
101 45 0.58
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTCAGTACTACACATGTGACCGAACAATCGGGTACACATAGTAGCCTGCACTT
AGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:89358345 original size:21 final size:21
Alignment explanation
Indices: 89358304--89358346 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
89358294 GGCAACCGAA
* *
89358304 TCATGCTATTTCATATACATT
1 TCATGCCATTTCATAAACATT
89358325 TCATGCCATTT-ATAAACCATT
1 TCATGCCATTTCATAAA-CATT
89358346 T
1 T
89358347 ATTCAACCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (21 bp):
TCATGCCATTTCATAAACATT
Found at i:89361948 original size:43 final size:42
Alignment explanation
Indices: 89361879--89362044 Score: 165
Period size: 43 Copynumber: 3.9 Consensus size: 42
89361869 AGATCATATA
* * *
89361879 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA-ATCG
* *** * *
89361921 ACGCCAATGTCCCAGACATGGTCTTACACAAAATCATATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA-ATCG
* * * *
89361964 ATGACAATGTCCCAGACATGATCTTACATGTAACCACAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAAT-CG
89362007 ATGCCAATGTCCC-GAACATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAG-ACATGGTCTTACATGTAATCACA
89362045 TCTCGGTAAT
Statistics
Matches: 98, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
42 6 0.06
43 92 0.94
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATCG
Found at i:89371634 original size:55 final size:55
Alignment explanation
Indices: 89371568--89371671 Score: 199
Period size: 55 Copynumber: 1.9 Consensus size: 55
89371558 ATTCAATGTC
*
89371568 ACATGTGAATTCATTAAATTCTTCCCTTTTTAATACTCGTATGAATCTCATACAT
1 ACATGTGAATTCATTAAATACTTCCCTTTTTAATACTCGTATGAATCTCATACAT
89371623 ACATGTGAATTCATTAAATACTTCCCTTTTTAATACTCGTATGAATCTC
1 ACATGTGAATTCATTAAATACTTCCCTTTTTAATACTCGTATGAATCTC
89371672 GTACGTACCT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (55 bp):
ACATGTGAATTCATTAAATACTTCCCTTTTTAATACTCGTATGAATCTCATACAT
Found at i:89374376 original size:6 final size:6
Alignment explanation
Indices: 89374367--89374436 Score: 53
Period size: 6 Copynumber: 11.8 Consensus size: 6
89374357 CACCTTTTCC
89374367 TTTCTT TTTCTCAAT TTTC-T TTTCTT TTTCTT TTTC-- TTTCTT TTT-TT
1 TTTCTT TTTCT---T TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
89374414 TTGT-TT TTT-TT TTTACTT TTTCT
1 TT-TCTT TTTCTT TTT-CTT TTTCT
89374437 GCAGACTCTT
Statistics
Matches: 55, Mismatches: 0, Indels: 18
0.75 0.00 0.25
Matches are distributed among these distances:
4 4 0.07
5 15 0.27
6 26 0.47
7 5 0.09
9 5 0.09
ACGTcount: A:0.04, C:0.14, G:0.01, T:0.80
Consensus pattern (6 bp):
TTTCTT
Found at i:89374384 original size:20 final size:21
Alignment explanation
Indices: 89374351--89374397 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
89374341 TTTACCTCAA
*
89374351 TTTTCTCACCTTTTCCTTTCT
1 TTTTCTCACATTTTCCTTTCT
*
89374372 TTTTCTCA-ATTTTCTTTTCT
1 TTTTCTCACATTTTCCTTTCT
89374392 TTTTCT
1 TTTTCT
89374398 TTTTCTTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTCTCACATTTTCCTTTCT
Found at i:89374394 original size:30 final size:30
Alignment explanation
Indices: 89374346--89374407 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
89374336 GTGTTTTTAC
89374346 CTCAATTTTCTCACCTTTTCCTTTCTT-TTT
1 CTCAATTTTCTCACCTTTTCCTTT-TTCTTT
*** *
89374376 CTCAATTTTCTTTTCTTTTTCTTTTTCTTT
1 CTCAATTTTCTCACCTTTTCCTTTTTCTTT
89374406 CT
1 CT
89374408 TTTTTTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.08, C:0.26, G:0.00, T:0.66
Consensus pattern (30 bp):
CTCAATTTTCTCACCTTTTCCTTTTTCTTT
Found at i:89374410 original size:26 final size:26
Alignment explanation
Indices: 89374367--89374432 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
89374357 CACCTTTTCC
**
89374367 TTTCTTTTTCTCAATTTTCTTTTCTT
1 TTTCTTTTTCTTTATTTTCTTTTCTT
* * *
89374393 TTTCTTTTTCTTTCTTTTTTTTTGTT
1 TTTCTTTTTCTTTATTTTCTTTTCTT
*
89374419 TTTTTTTTTACTTT
1 TTTCTTTTT-CTTT
89374433 TTCTGCAGAC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 29 0.88
27 4 0.12
ACGTcount: A:0.05, C:0.14, G:0.02, T:0.80
Consensus pattern (26 bp):
TTTCTTTTTCTTTATTTTCTTTTCTT
Found at i:89374434 original size:11 final size:10
Alignment explanation
Indices: 89374381--89374425 Score: 63
Period size: 10 Copynumber: 4.4 Consensus size: 10
89374371 TTTTTCTCAA
89374381 TTTTCTTTTCT
1 TTTTCTTTT-T
89374392 TTTTCTTTTT
1 TTTTCTTTTT
*
89374402 CTTTCTTTTT
1 TTTTCTTTTT
*
89374412 TTTTGTTTTT
1 TTTTCTTTTT
89374422 TTTT
1 TTTT
89374426 TTACTTTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
10 22 0.71
11 9 0.29
ACGTcount: A:0.00, C:0.11, G:0.02, T:0.87
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:89384711 original size:21 final size:22
Alignment explanation
Indices: 89384685--89384725 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
89384675 ACACACACTC
89384685 AACTTAATTGAGCT-ATTAATG
1 AACTTAATTGAGCTAATTAATG
89384706 AACTTAATTGAGCTAATTAA
1 AACTTAATTGAGCTAATTAA
89384726 AAACTACAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (22 bp):
AACTTAATTGAGCTAATTAATG
Found at i:89384730 original size:21 final size:21
Alignment explanation
Indices: 89384685--89384730 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
89384675 ACACACACTC
*
89384685 AACTTAATTGAGCTATTAATG
1 AACTTAATTGAGCTATTAATA
89384706 AACTTAATTGAGCTAATTAA-A
1 AACTTAATTGAGCT-ATTAATA
89384727 AACT
1 AACT
89384731 ACAAGACCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (21 bp):
AACTTAATTGAGCTATTAATA
Found at i:89385357 original size:40 final size:39
Alignment explanation
Indices: 89385290--89385398 Score: 148
Period size: 40 Copynumber: 2.7 Consensus size: 39
89385280 TTTAGTGGCA
* *
89385290 TTAGCGGCGCTTTTTAAAAAACACCGCTAATGCTCGATCT
1 TTAGC-GCGCTTTTTAACAAACGCCGCTAATGCTCGATCT
*
89385330 TTAGTTGCGCTTTTTAACAAACGCCGCTAATGCTCGATCT
1 TTAG-CGCGCTTTTTAACAAACGCCGCTAATGCTCGATCT
*
89385370 TTAGCGACGC-TTTGAACAAACGCCGCTAA
1 TTAGCG-CGCTTTTTAACAAACGCCGCTAA
89385399 AAATTTTACA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
39 19 0.31
40 43 0.69
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (39 bp):
TTAGCGCGCTTTTTAACAAACGCCGCTAATGCTCGATCT
Found at i:89385881 original size:44 final size:45
Alignment explanation
Indices: 89385846--89385946 Score: 148
Period size: 45 Copynumber: 2.2 Consensus size: 45
89385836 TATTTTCTTA
*
89385846 TATAATTGTAAAAGAGATAGTATTAATTTTAAAATATTGAATTAAT
1 TATAATTAT-AAAGAGATAGTATTAATTTTAAAATATTGAATTAAT
* **
89385892 TATCATTATAGTGAGATAGTATTAATTTTAAAATATTGAATTAAT
1 TATAATTATAAAGAGATAGTATTAATTTTAAAATATTGAATTAAT
*
89385937 TATCATTATA
1 TATAATTATA
89385947 GTTTAGGGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 44 0.86
46 7 0.14
ACGTcount: A:0.45, C:0.02, G:0.10, T:0.44
Consensus pattern (45 bp):
TATAATTATAAAGAGATAGTATTAATTTTAAAATATTGAATTAAT
Found at i:89385910 original size:45 final size:45
Alignment explanation
Indices: 89385859--89385948 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
89385849 AATTGTAAAA
89385859 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATAGT
1 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATAGT
89385904 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATAGT
1 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATAGT
89385949 TTAGGGTTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.44
Consensus pattern (45 bp):
GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATAGT
Found at i:89387096 original size:13 final size:13
Alignment explanation
Indices: 89387078--89387104 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
89387068 CTCTCTCTCG
89387078 TTTTAATTTATCT
1 TTTTAATTTATCT
89387091 TTTTAATTTATCT
1 TTTTAATTTATCT
89387104 T
1 T
89387105 CAAGCTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTAATTTATCT
Found at i:89389206 original size:23 final size:23
Alignment explanation
Indices: 89389176--89389379 Score: 142
Period size: 23 Copynumber: 9.2 Consensus size: 23
89389166 TGGCTACTGT
*
89389176 TGTTTAAATGCTGCAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
89389199 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
**
89389222 TGTTTAAATATTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
*
89389245 TGTCT--A----G-AAATTGAGA-
1 TGTTTAAATGCTGTAAATTGA-AG
* ** *
89389261 TGTTTTATCGCTGTA-ATTGAAT
1 TGTTTAAATGCTGTAAATTGAAG
* * * *
89389283 TATATAAATGTTGTTAATTG-AG
1 TGTTTAAATGCTGTAAATTGAAG
*
89389305 ATG-TTAAAGTGCTGCAAATTGAAG
1 -TGTTTAAA-TGCTGTAAATTGAAG
**
89389329 TGTTTAAACACTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* * *
89389352 TGCTTAAATGTTGTAAATTAAAG
1 TGTTTAAATGCTGTAAATTGAAG
89389375 TGTTT
1 TGTTT
89389380 TAAGTATTGC
Statistics
Matches: 139, Mismatches: 28, Indels: 28
0.71 0.14 0.14
Matches are distributed among these distances:
16 11 0.08
17 2 0.01
21 2 0.01
22 19 0.14
23 98 0.71
24 7 0.05
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.40
Consensus pattern (23 bp):
TGTTTAAATGCTGTAAATTGAAG
Found at i:89389416 original size:23 final size:22
Alignment explanation
Indices: 89389390--89389457 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 22
89389380 TAAGTATTGC
89389390 AAATTGAAGAGTTTAGTTGCTAG
1 AAATTGAAGAGTTTAGTTGCT-G
*
89389413 AAATT-AAGATGTTTTA-TCGCTG
1 AAATTGAAGA-G-TTTAGTTGCTG
* *
89389435 CAAATTGAAGTGCTTAGTTGCTG
1 -AAATTGAAGAGTTTAGTTGCTG
89389458 GAAAAGAGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
22 8 0.22
23 21 0.58
24 7 0.19
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.37
Consensus pattern (22 bp):
AAATTGAAGAGTTTAGTTGCTG
Found at i:89389902 original size:19 final size:19
Alignment explanation
Indices: 89389879--89389925 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
89389869 ATTTAATCTA
*
89389879 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
89389897 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
89389917 ATTTTTATT
1 ATTTTTATT
89389926 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:89389927 original size:31 final size:30
Alignment explanation
Indices: 89389846--89389937 Score: 100
Period size: 31 Copynumber: 3.0 Consensus size: 30
89389836 AAAAGACTTG
*
89389846 CTATA-TTTTATTTATATCTTTATATTTAAT
1 CTATATTTTTATTTTTAT-TTTATATTTAAT
*
89389876 CTA-ATTTTTATTATTTATTTTAGT-TTTGATT
1 CTATATTTTTATT-TTTATTTTA-TATTT-AAT
89389907 CTATATTTTTATTTTTATTTTAATATTTAAT
1 CTATATTTTTATTTTTATTTT-ATATTTAAT
89389938 AACTTGAGTT
Statistics
Matches: 52, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
29 1 0.02
30 17 0.33
31 21 0.40
32 13 0.25
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.66
Consensus pattern (30 bp):
CTATATTTTTATTTTTATTTTATATTTAAT
Found at i:89390083 original size:11 final size:11
Alignment explanation
Indices: 89390063--89390091 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
89390053 TTTAATTTGA
89390063 TAAT-GAATTT
1 TAATAGAATTT
89390073 TAATAGAATTT
1 TAATAGAATTT
89390084 TAATAGAA
1 TAATAGAA
89390092 AATTTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (11 bp):
TAATAGAATTT
Found at i:89391938 original size:668 final size:667
Alignment explanation
Indices: 89390538--89392284 Score: 2679
Period size: 668 Copynumber: 2.6 Consensus size: 667
89390528 GGATCGCATC
* *
89390538 AGATGATAAAGACACTTAGGTTTTAACCCCCTTATCCCATAAAAAGCCTCCCTTTTTAATTAACC
1 AGATGATAAAGGCACTTAGGTTTTAACCCACTTATCCCATAAAAAGCCTCCCTTTTTAATTAACC
89390603 CTTAGTGAACCCCGTTAAACCTAACATCCCGTTTCTTGATTAACCCATTAATGTTAACCATAACC
66 CTTAGTGAACCCCGTTAAACCTAACATCCCGTTTCTTGATTAACCCATTAATGTTAACCATAACC
* * * * * *
89390668 CA-TTTTTTTAGTTGTGACTCATCTCGTTTTATTGACTCCCTTTTTGTCGACATTTGATTTTGTT
131 CATTTTTTTTCGTTGTGACTCTTCTCATTTTATTGACTCCTTTTTTGTCGATATTTGATTTGGTT
* * * * *
89390732 AGTTGCCCAACTATGCTCTTTTGTTTGATTTGCTGAATTATTTCTTATTGCTCTAAATAAG---A
196 AGTTGCCTAACTATGCTCTTATGTTTGATTTGCTAAATTATTTCTTATTGTTCTAGATAAGAAAA
* * * * * *
89390794 A-AAAAAATATCGATTATCAATTAGTTATTTGTTAATCGAGCTTGAATAGTTAATTTCATATTCT
261 AGAAAAAATATTGATTATTAATTAGTTATTTGTTGATTGAGCTTGAATAGTCAATTTCATATTTT
* * *
89390858 GAGAAGAAGCTCTTTTTTGTTCTTCAATAGTTATCGATGCGCTTGTTTTTAATTCAACATTTGTT
326 GAGAAGAAGCTCATTTTTGTTCTTGAATAGTTATTGATGCGCTTGTTTTTAATTCAACATTTGTT
89390923 TAATTTTGCTAGTTTGGTAATTTCTAGTCAAACATGATAAGTTATTTTTAAAATTAAAATTTTTT
391 TAATTTTGCTAGTTTGGTAATTTCTAGTCAAACATGATAAGTTATTTTTAAAATTAAAATTTTTT
* * *
89390988 AGGTTGTTTCCTTGAATTGAGGTATTATCTTGAAGTTTTAAATTTGCAAGTTTGACATTAAAACC
456 AGGCTGTTTCCCTGAATTGAGGTATTATCTTGAAGTTTTAAATTTGCAAGTTTGACATCAAAACC
89391053 ATGATTTTTTTGTGAGATTTTAAGCCTTTAGGGCATACATTTTCATGCTCATTTTATCGTTGGTT
521 ATGATTTTTTTGTGAGATTTTAAGCCTTTAGGGCATACATTTTCATGCTCATTTTATCGTTGGTT
*
89391118 ATATGTGTGTCAACTTGACTTGTTATTCTAGAACTTACTTCGATTATGCATGTCGAGACCACACC
586 ATATGTATGTCAACTTGACTTGTTATTCTAGAACTTACTTCGATTATGCATGTCGAGACCACACC
*
89391183 TTTGATTTGGTATACTA
651 TTTGATTTGATATACTA
*
89391200 AGATGATAAAGGCACTTAGGTTTTAACCCACTTATCCCAT-AAAAGCCTCCCTTTTTATTTAACC
1 AGATGATAAAGGCACTTAGGTTTTAACCCACTTATCCCATAAAAAGCCTCCCTTTTTAATTAACC
* * *
89391264 CTTAGTGAAACCCGTTAAACCTAACATCCCGTTTCTTGATTAACTCGTTAATG-TAACCATAACC
66 CTTAGTGAACCCCGTTAAACCTAACATCCCGTTTCTTGATTAACCCATTAATGTTAACCATAACC
* *
89391328 CATTTTTTTTTCGTTGTGACTCTTCTCATTTTATTGACTCATTTTTTGTTGATATTTGATTTGGT
131 CA-TTTTTTTTCGTTGTGACTCTTCTCATTTTATTGACTCCTTTTTTGTCGATATTTGATTTGGT
* ** * *
89391393 TAGTTACCTAGTTATACTCTTATGTTTGATTTGCTAAATTATTTCTTATTGTTATAGATAAGAAA
195 TAGTTGCCTAACTATGCTCTTATGTTTGATTTGCTAAATTATTTCTTATTGTTCTAGATAAGAAA
* *
89391458 AATGAAAATAATATTGATTATTAATTAGTAATTTGTTGATTGAGCTTGAATACTCAATTTCATAT
260 AA-GAAAA-AATATTGATTATTAATTAGTTATTTGTTGATTGAGCTTGAATAGTCAATTTCATAT
89391523 TTTGAGAAGAAGCTCATTTTTGTTCTTGAATAGTTATTGATGCGCTTGTTTTTAATTCAACATTT
323 TTTGAGAAGAAGCTCATTTTTGTTCTTGAATAGTTATTGATGCGCTTGTTTTTAATTCAACATTT
* *
89391588 GTTTAATTTTGCTAGTTTGATAATTTCTAGTCAAACATGATAAGTTATTTTTAGAATTAAAATTT
388 GTTTAATTTTGCTAGTTTGGTAATTTCTAGTCAAACATGATAAGTTATTTTTAAAATTAAAATTT
*
89391653 TTTAGGCTGTTTCCCTGAATTGAGGTATTATCTTGAAGTTTTAAATTTGTAAGTTTGACATCAAA
453 TTTAGGCTGTTTCCCTGAATTGAGGTATTATCTTGAAGTTTTAAATTTGCAAGTTTGACATCAAA
* *
89391718 ACCATGA-TTTTTTGTGAGATTTTAAGCCTTTAGGGCATACATTTTCATGCTCATTTTGTTGTTG
518 ACCATGATTTTTTTGTGAGATTTTAAGCCTTTAGGGCATACATTTTCATGCTCATTTTATCGTTG
* * * *
89391782 GTTTTGA-GTATGTCAACTTGATTTGTTATTTTAGAACTTATTTCGATTATGCATGTCGAGACCA
583 GTTAT-ATGTATGTCAACTTGACTTGTTATTCTAGAACTTACTTCGATTATGCATGTCGAGACCA
89391846 CACCTTTGATTTGATATACTA
647 CACCTTTGATTTGATATACTA
* * * *
89391867 AGATGATAAAGGCACTTAGGTTTTAACACACTTATCTCATAAAAAGGCACCCTTTTTAATTAACC
1 AGATGATAAAGGCACTTAGGTTTTAACCCACTTATCCCATAAAAAGCCTCCCTTTTTAATTAACC
* *
89391932 CTTAGTGAACCCCGTTAAACCAAACATCCCGTTTCTTGATTAGCCCATTAATGTTAACCATAACC
66 CTTAGTGAACCCCGTTAAACCTAACATCCCGTTTCTTGATTAACCCATTAATGTTAACCATAACC
* * * *
89391997 CATTTTTTTTCGTTGTGACTTTTCTTATTTTATTGACTCCTTTTTTGTCAATATTTGATTTGATT
131 CATTTTTTTTCGTTGTGACTCTTCTCATTTTATTGACTCCTTTTTTGTCGATATTTGATTTGGTT
* * ** *
89392062 AGTTGCCTAACTATGCTCTTCTATTTGATTTGCTAAATTATTTCTTATAATTCTAGATAAAAAAA
196 AGTTGCCTAACTATGCTCTTATGTTTGATTTGCTAAATTATTTCTTATTGTTCTAGATAAGAAAA
* * *
89392127 GAGAAAACAAAAATATTGATTATTAATTAGTTATTTGTTGATTGAGTTTGGACAGTCAATTTCAT
261 -AG---A-AAAAATATTGATTATTAATTAGTTATTTGTTGATTGAGCTTGAATAGTCAATTTCAT
* * * *
89392192 ATTTTGAGAAGAAGCTCGTTTTTTTTCTTGAATAGTTATTGATGCG-TGGATTTTTAATTCAAAA
321 ATTTTGAGAAGAAGCTCATTTTTGTTCTTGAATAGTTATTGATGCGCTTG-TTTTTAATTCAACA
89392256 TTTGTTTAATGTTT-CTAGTTTGGTAATTT
385 TTTGTTTAAT-TTTGCTAGTTTGGTAATTT
89392285 ATCAACTCAA
Statistics
Matches: 982, Mismatches: 85, Indels: 27
0.90 0.08 0.02
Matches are distributed among these distances:
660 13 0.01
661 73 0.07
662 143 0.15
665 2 0.00
667 174 0.18
668 424 0.43
669 14 0.01
670 2 0.00
671 131 0.13
672 6 0.01
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (667 bp):
AGATGATAAAGGCACTTAGGTTTTAACCCACTTATCCCATAAAAAGCCTCCCTTTTTAATTAACC
CTTAGTGAACCCCGTTAAACCTAACATCCCGTTTCTTGATTAACCCATTAATGTTAACCATAACC
CATTTTTTTTCGTTGTGACTCTTCTCATTTTATTGACTCCTTTTTTGTCGATATTTGATTTGGTT
AGTTGCCTAACTATGCTCTTATGTTTGATTTGCTAAATTATTTCTTATTGTTCTAGATAAGAAAA
AGAAAAAATATTGATTATTAATTAGTTATTTGTTGATTGAGCTTGAATAGTCAATTTCATATTTT
GAGAAGAAGCTCATTTTTGTTCTTGAATAGTTATTGATGCGCTTGTTTTTAATTCAACATTTGTT
TAATTTTGCTAGTTTGGTAATTTCTAGTCAAACATGATAAGTTATTTTTAAAATTAAAATTTTTT
AGGCTGTTTCCCTGAATTGAGGTATTATCTTGAAGTTTTAAATTTGCAAGTTTGACATCAAAACC
ATGATTTTTTTGTGAGATTTTAAGCCTTTAGGGCATACATTTTCATGCTCATTTTATCGTTGGTT
ATATGTATGTCAACTTGACTTGTTATTCTAGAACTTACTTCGATTATGCATGTCGAGACCACACC
TTTGATTTGATATACTA
Found at i:89392914 original size:11 final size:11
Alignment explanation
Indices: 89392898--89392922 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
89392888 ATTTGGGAGC
89392898 AAAACGAGTGA
1 AAAACGAGTGA
89392909 AAAACGAGTGA
1 AAAACGAGTGA
89392920 AAA
1 AAA
89392923 TCAGAGAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.24, T:0.08
Consensus pattern (11 bp):
AAAACGAGTGA
Found at i:89396073 original size:24 final size:25
Alignment explanation
Indices: 89396046--89396093 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
89396036 AACATTAACA
*
89396046 ATTTTTTTTGTT-AATTTGATCATT
1 ATTTTTTTAGTTAAATTTGATCATT
*
89396070 ATTTTTTTAGTTAAATTTGGTCAT
1 ATTTTTTTAGTTAAATTTGATCAT
89396094 CAACCTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.23, C:0.04, G:0.10, T:0.62
Consensus pattern (25 bp):
ATTTTTTTAGTTAAATTTGATCATT
Found at i:89396277 original size:22 final size:23
Alignment explanation
Indices: 89396247--89396289 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
89396237 GTCAACAAAT
*
89396247 AATTTAAAAATT-ATAAAAATAA
1 AATTAAAAAATTCATAAAAATAA
89396269 AATTAAAAAATTCATAAAAAT
1 AATTAAAAAATTCATAAAAAT
89396290 TAAGAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
AATTAAAAAATTCATAAAAATAA
Found at i:89397473 original size:29 final size:29
Alignment explanation
Indices: 89397437--89397494 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
89397427 AAATAAATTT
89397437 TGATTTGGAGATTTATCAATAAATTATTG
1 TGATTTGGAGATTTATCAATAAATTATTG
89397466 TGATTTGGAGATTTATCAATAAATTATTG
1 TGATTTGGAGATTTATCAATAAATTATTG
89397495 GTTAAGGTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.45
Consensus pattern (29 bp):
TGATTTGGAGATTTATCAATAAATTATTG
Found at i:89401295 original size:46 final size:45
Alignment explanation
Indices: 89401242--89401417 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
89401232 TATTTGGGCA
*
89401242 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
89401288 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
89401335 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
89401381 CCCGAGCTCGTTGTGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89401418 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 67 0.62
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:89401399 original size:93 final size:93
Alignment explanation
Indices: 89401238--89401409 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
89401228 GGGATATTTG
* * *
89401238 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
89401303 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
89401331 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGTG
1 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
89401396 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
89401410 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:89410701 original size:5 final size:5
Alignment explanation
Indices: 89410691--89410722 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
89410681 CAATTTGTGA
89410691 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
89410723 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:89410716 original size:9 final size:9
Alignment explanation
Indices: 89410692--89410722 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
89410682 AATTTGTGAA
89410692 AAATAAAAT
1 AAATAAAAT
89410701 AAAATAAAAT
1 -AAATAAAAT
89410711 AAATAAAAT
1 AAATAAAAT
89410720 AAA
1 AAA
89410723 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:89411522 original size:19 final size:19
Alignment explanation
Indices: 89411486--89411533 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
89411476 TTTTTTTGTG
*
89411486 TGTCTTTTACTGTTCTTTT
1 TGTCTTTTACAGTTCTTTT
89411505 TGTCTTTT-CAGTTACTTTT
1 TGTCTTTTACAGTT-CTTTT
*
89411524 GGTCTGTTTA
1 TGTCT-TTTA
89411534 GTGTTGTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 4 0.17
19 17 0.71
20 3 0.12
ACGTcount: A:0.08, C:0.15, G:0.15, T:0.62
Consensus pattern (19 bp):
TGTCTTTTACAGTTCTTTT
Found at i:89412865 original size:89 final size:89
Alignment explanation
Indices: 89412762--89412940 Score: 349
Period size: 89 Copynumber: 2.0 Consensus size: 89
89412752 TATACTTGGA
89412762 CTTTCTAATTATTAGGGGAGAGTGAGAATTGAAGTAATTACATGGGTAATTACGTCCAAATCCAA
1 CTTTCTAATTATTAGGGGAGAGTGAGAATTGAAGTAATTACATGGGTAATTACGTCCAAATCCAA
*
89412827 TTATCTTATGGCTTTCCAAATACT
66 TTATCTTATAGCTTTCCAAATACT
89412851 CTTTCTAATTATTAGGGGAGAGTGAGAATTGAAGTAATTACATGGGTAATTACGTCCAAATCCAA
1 CTTTCTAATTATTAGGGGAGAGTGAGAATTGAAGTAATTACATGGGTAATTACGTCCAAATCCAA
89412916 TTATCTTATAGCTTTCCAAATACT
66 TTATCTTATAGCTTTCCAAATACT
89412940 C
1 C
89412941 ATACATGATT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (89 bp):
CTTTCTAATTATTAGGGGAGAGTGAGAATTGAAGTAATTACATGGGTAATTACGTCCAAATCCAA
TTATCTTATAGCTTTCCAAATACT
Found at i:89416276 original size:21 final size:22
Alignment explanation
Indices: 89416250--89416292 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
89416240 AAGTTCTTGT
89416250 TTATTTTGATTTT-TTTTATTG
1 TTATTTTGATTTTATTTTATTG
89416271 TTATTTTGATTTTGATTTTATT
1 TTATTTTGATTTT-ATTTTATT
89416293 TATATATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 13 0.65
23 7 0.35
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.74
Consensus pattern (22 bp):
TTATTTTGATTTTATTTTATTG
Found at i:89427486 original size:38 final size:38
Alignment explanation
Indices: 89427430--89427504 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
89427420 GATGTGTATT
* * *
89427430 CGGGTTAAATCCTGCAGGCTTCA-TGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCT-AGTGCTGGTATTATATC
89427468 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
89427505 TCGTGCCTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:89427557 original size:43 final size:43
Alignment explanation
Indices: 89427481--89427669 Score: 247
Period size: 43 Copynumber: 4.4 Consensus size: 43
89427471 GATAAATCCC
* * * *
89427481 GCAGGCCTAGTGCTGGT-AT-TATATTCGTGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
89427522 GCAGTCTTAGTGCCGGTGATGTGTATTTGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
89427565 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCATA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
89427608 GCACGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
89427651 GTAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
89427670 AATGATATGT
Statistics
Matches: 128, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
41 14 0.11
42 2 0.02
43 112 0.88
ACGTcount: A:0.14, C:0.23, G:0.32, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:89431700 original size:30 final size:30
Alignment explanation
Indices: 89431666--89431726 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
89431656 TCCTTAACTA
89431666 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
89431696 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
89431726 A
1 A
89431727 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:89436225 original size:64 final size:64
Alignment explanation
Indices: 89436124--89436247 Score: 221
Period size: 64 Copynumber: 1.9 Consensus size: 64
89436114 CATATAATAA
*
89436124 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
* *
89436188 CACATCTAGTTAGGATCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGGCATAA
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAA
89436248 ACATTGATAC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:89436405 original size:45 final size:44
Alignment explanation
Indices: 89436356--89436752 Score: 155
Period size: 45 Copynumber: 9.0 Consensus size: 44
89436346 GAGTAGACTA
*
89436356 AAGATTGTAGATCTTGTCTCCCTGAAGTTGCAATGGAGCAGATCG
1 AAGA-TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
** * * * **
89436401 AAGATGGCGAATCTTGTCTCCCTGAAGTTGTAGTGAAGCAAATTT
1 AAGATGTAG-ATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
** * * * ** * **
89436446 AAG--CCACCATCTTATCTCCCT-AAGTTGTAGTGGAATAGGTTAA
1 AAGATGTA-GATCTTGTCTCCCTGAAGTTGCAGTGGAGCA-GATCG
* *
89436489 AAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAAATCG
1 AAGA-TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
* * **
89436534 AAGACGGT-GAATATTGTCTCCCTGAAGTTGCAGTGGAGCAGATTT
1 AAGA-TGTAG-ATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
** * * * * *
89436579 AAG--CCACCATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTG
1 AAGATGTA-GATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
**** * * * * * *
89436622 AAGCCACAAATCTTATCCCCCTAAAGTTGCAGTGGGGCAGGTCG
1 AAGATGTAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
* * * * *
89436666 AA-AT-TACAAGTCTTATCTACCTGAAGTTGCAGTGGACCAG-CCTG
1 AAGATGTA-GA-TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATC-G
* * * ** *
89436710 AAGATAGAAAATCTTATCTTTCTGAAGTTGCAGTAGAGCAGAT
1 AAGAT-GTAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGAT
89436753 TAAAGCTACA
Statistics
Matches: 263, Mismatches: 70, Indels: 37
0.71 0.19 0.10
Matches are distributed among these distances:
42 14 0.05
43 52 0.20
44 62 0.24
45 118 0.45
46 16 0.06
47 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
AAGATGTAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCG
Found at i:89436563 original size:133 final size:132
Alignment explanation
Indices: 89436326--89436618 Score: 442
Period size: 133 Copynumber: 2.2 Consensus size: 132
89436316 TCACAAGCCC
* * *
89436326 TATCTCCCTAAATTGTAGTGGAGTAGACTAAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAATG
1 TATCTCCCTAAGTTGTAGTGGAATAGACTAAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAATG
* * * *
89436391 GAGCAGATCGAAGATGGCGAATCTTGTCTCCCTGAAGTTGTAGTGAAGCAAATTTAAGCCACCAT
66 GAGCAAATCGAAGACGGCGAATATTGTCTCCCTGAAGTTGCAGTGAAGCAAATTTAAGCCACCAT
89436456 CT
131 CT
** *
89436458 TATCTCCCTAAGTTGTAGTGGAATAGGTTAAAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGT
1 TATCTCCCTAAGTTGTAGTGGAATAGACT-AAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAAT
* * *
89436523 GGAGCAAATCGAAGACGGTGAATATTGTCTCCCTGAAGTTGCAGTGGAGCAGATTTAAGCCACCA
65 GGAGCAAATCGAAGACGGCGAATATTGTCTCCCTGAAGTTGCAGTGAAGCAAATTTAAGCCACCA
89436588 TCT
130 TCT
*
89436591 TATCTCCCTGAAGTTGTAGTGGAGTAGA
1 TATCTCCCT-AAGTTGTAGTGGAATAGA
89436619 TTGAAGCCAC
Statistics
Matches: 144, Mismatches: 15, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
132 25 0.17
133 103 0.72
134 16 0.11
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (132 bp):
TATCTCCCTAAGTTGTAGTGGAATAGACTAAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAATG
GAGCAAATCGAAGACGGCGAATATTGTCTCCCTGAAGTTGCAGTGAAGCAAATTTAAGCCACCAT
CT
Found at i:89436650 original size:44 final size:43
Alignment explanation
Indices: 89436553--89436784 Score: 158
Period size: 44 Copynumber: 5.3 Consensus size: 43
89436543 AATATTGTCT
* * *
89436553 CCCTGAAGTTGCAGTGGAGCAGATTTAAGCCACCATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAATCTTATCC
* *
89436596 CCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACAAATCTTATCC
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAC-AATCTTATCC
* * * * *** *
89436640 CCCTAAAGTTGCAGTGGGGCAGGTCGAAATTACAAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAA-TCTTATCC
* * ** ** * *
89436684 ACCTGAAGTTGCAGTGGACCAGCCTGAAGATAGAAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG--CCACAATCTTATCC
** * * * * *
89436729 TTCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCCTATAC
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAC-AATCTTATCC
*
89436773 CTCTGAAGTTGC
1 CCCTGAAGTTGC
89436785 GGTAGGTCGG
Statistics
Matches: 144, Mismatches: 40, Indels: 9
0.75 0.21 0.05
Matches are distributed among these distances:
43 33 0.23
44 78 0.54
45 30 0.21
46 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAATCTTATCC
Found at i:89441981 original size:21 final size:22
Alignment explanation
Indices: 89441956--89442009 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
89441946 TAGAATGCAT
*
89441956 TAATATTATAAATATAGTA-AA
1 TAATAATATAAATATAGTACAA
**
89441977 TAATACGATAAATATAGTACAA
1 TAATAATATAAATATAGTACAA
89441999 TAATAATATAA
1 TAATAATATAA
89442010 TTACAATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 17 0.61
22 11 0.39
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (22 bp):
TAATAATATAAATATAGTACAA
Found at i:89442420 original size:115 final size:111
Alignment explanation
Indices: 89442256--89442464 Score: 312
Period size: 115 Copynumber: 1.8 Consensus size: 111
89442246 AAAAACAAAT
* * * * *
89442256 AAAATTACATCATAACAAATAAAATTACATTAAACTAAACAAATAATTTATAACCTAATGATAAA
1 AAAATTACATCATAAAAAATAAAATAACACTAAACTAAACAAACAATTTATAACCTAATAATAAA
89442321 TTACTAACAAAATAACTTT-AAAATAATTTTAAAAAAACACAAAAA
66 TTACTAACAAAATAACTTTAAAAATAATTTTAAAAAAACACAAAAA
*
89442366 AAAATTACATTCATAAAAAATCACAATAAACACTAAACTAAAGACAAACAATTTATAACCTAATA
1 AAAATTACA-TCATAAAAAAT-AAAAT-AACACTAAACT-AA-ACAAACAATTTATAACCTAATA
89442431 ATAAATTACTAACAAAATAACTTTAAAAATAATT
61 ATAAATTACTAACAAAATAACTTTAAAAATAATT
89442465 AATTTTTTTT
Statistics
Matches: 87, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
110 9 0.10
111 10 0.11
112 4 0.05
113 9 0.10
114 2 0.02
115 44 0.51
116 9 0.10
ACGTcount: A:0.59, C:0.13, G:0.01, T:0.27
Consensus pattern (111 bp):
AAAATTACATCATAAAAAATAAAATAACACTAAACTAAACAAACAATTTATAACCTAATAATAAA
TTACTAACAAAATAACTTTAAAAATAATTTTAAAAAAACACAAAAA
Found at i:89442487 original size:103 final size:104
Alignment explanation
Indices: 89442370--89442562 Score: 343
Period size: 104 Copynumber: 1.9 Consensus size: 104
89442360 CAAAAAAAAA
*
89442370 TTACATTCATAAAAAA-TCACAATAAACACTAAACTAAAGACAAACAATTTATAACCTAATAATA
1 TTACATTCATAAAAAATTCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATAATA
*
89442434 AATTACTAACAAAATAACTTTAAAAATAATTAATTTTTT
66 AATTACAAACAAAATAACTTTAAAAATAATTAATTTTTT
* *
89442473 TTACATTCATAAAAAATTCACAATAAACACTAAATTAAACACAAACAATTTATAACCTAATCATA
1 TTACATTCATAAAAAATTCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATAATA
89442538 AATTACAAACAAAATAACTTTAAAA
66 AATTACAAACAAAATAACTTTAAAA
89442563 CAATTTTTTT
Statistics
Matches: 85, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
103 16 0.19
104 69 0.81
ACGTcount: A:0.55, C:0.15, G:0.01, T:0.29
Consensus pattern (104 bp):
TTACATTCATAAAAAATTCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATAATA
AATTACAAACAAAATAACTTTAAAAATAATTAATTTTTT
Found at i:89442755 original size:4 final size:4
Alignment explanation
Indices: 89442738--89442797 Score: 75
Period size: 4 Copynumber: 14.2 Consensus size: 4
89442728 AAACATACCT
* *
89442738 TTTC TTTT TTTC TTTC TTTC TTTC TTTTCC TTCC TTTCC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC -TTT-C TTTC TTT-C TTTC TTTC TTTC
89442789 TTTC TTTC T
1 TTTC TTTC T
89442798 CTCCTTATGT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
4 39 0.80
5 9 0.18
6 1 0.02
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTC
Found at i:89443267 original size:21 final size:20
Alignment explanation
Indices: 89443216--89443271 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
89443206 TTTTTATATA
*
89443216 TTTTAAATATAAATTTTTAT
1 TTTTAAATTTAAATTTTTAT
* *
89443236 TTTTAAGAATTTAATTTTATTGT
1 TTTT-A-AATTTAAATTT-TTAT
89443259 TTTTAAATTTAAA
1 TTTTAAATTTAAA
89443272 AAATATAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 4 0.14
21 8 0.28
22 10 0.34
23 7 0.24
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.59
Consensus pattern (20 bp):
TTTTAAATTTAAATTTTTAT
Found at i:89449369 original size:25 final size:25
Alignment explanation
Indices: 89449335--89449391 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
89449325 TATCCCTTGG
89449335 TTAGG-CAATACTTAGGATAACAAA
1 TTAGGACAATACTTAGGATAACAAA
* *
89449359 TTAGGACAATACTTATGATAGCAAA
1 TTAGGACAATACTTAGGATAACAAA
*
89449384 TTATGACA
1 TTAGGACA
89449392 GTTGAAGTGC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (25 bp):
TTAGGACAATACTTAGGATAACAAA
Found at i:89452878 original size:6 final size:5
Alignment explanation
Indices: 89452863--89452925 Score: 54
Period size: 6 Copynumber: 11.0 Consensus size: 5
89452853 GTCTAAAAAC
89452863 ATAACA ATAAA CATAAAA ATAGAA ATAAA ACTAAA ACTAAAA ATAAAA ATAAA
1 ATAA-A ATAAA -AT-AAA ATA-AA ATAAA A-TAAA A-T-AAA AT-AAA ATAAA
89452916 ATAAA ATAAA
1 ATAAA ATAAA
89452926 GAGACTCAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
5 18 0.35
6 27 0.52
7 7 0.13
ACGTcount: A:0.75, C:0.06, G:0.02, T:0.17
Consensus pattern (5 bp):
ATAAA
Found at i:89452891 original size:18 final size:16
Alignment explanation
Indices: 89452863--89452925 Score: 63
Period size: 18 Copynumber: 3.6 Consensus size: 16
89452853 GTCTAAAAAC
*
89452863 ATAACAATAAACATAAAA
1 ATAA-AATAAAAAT-AAA
*
89452881 ATAGAAATAAAACTAAA
1 ATA-AAATAAAAATAAA
89452898 ACTAAAAATAAAAATAAA
1 A-T-AAAATAAAAATAAA
89452916 ATAAAATAAA
1 ATAAAATAAA
89452926 GAGACTCAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
16 8 0.21
17 5 0.13
18 24 0.62
19 2 0.05
ACGTcount: A:0.75, C:0.06, G:0.02, T:0.17
Consensus pattern (16 bp):
ATAAAATAAAAATAAA
Found at i:89452897 original size:24 final size:22
Alignment explanation
Indices: 89452858--89452925 Score: 82
Period size: 24 Copynumber: 2.9 Consensus size: 22
89452848 AGGAAGTCTA
89452858 AAAACATAACAATAAACATAAAAAT
1 AAAA-ATAA-AATAAA-ATAAAAAT
*
89452883 AGAAATAAAACTAAAACTAAAAAT
1 AAAAATAAAA-TAAAA-TAAAAAT
89452907 AAAAATAAAATAAAATAAA
1 AAAAATAAAATAAAATAAA
89452926 GAGACTCAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
22 4 0.10
23 8 0.21
24 24 0.62
25 3 0.08
ACGTcount: A:0.75, C:0.07, G:0.01, T:0.16
Consensus pattern (22 bp):
AAAAATAAAATAAAATAAAAAT
Found at i:89466445 original size:21 final size:21
Alignment explanation
Indices: 89466375--89466445 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
89466365 CATATATATC
*
89466375 ATGAACTCAAACCACAACTCA
1 ATGAACTCAGACCACAACTCA
** * *
89466396 ATGAGTTCGGATGCCACATATATC-
1 ATGAACTCAGA--CCACA-A-CTCA
89466420 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
89466441 ATGAA
1 ATGAA
89466446 TTTAGATCAC
Statistics
Matches: 36, Mismatches: 9, Indels: 10
0.65 0.16 0.18
Matches are distributed among these distances:
20 2 0.06
21 13 0.36
22 5 0.14
23 5 0.14
24 9 0.25
25 2 0.06
ACGTcount: A:0.41, C:0.27, G:0.13, T:0.20
Consensus pattern (21 bp):
ATGAACTCAGACCACAACTCA
Found at i:89468566 original size:28 final size:28
Alignment explanation
Indices: 89468526--89468582 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
89468516 CAATATAAGA
89468526 ACATAATTTGAAGTTTATGTGATTGTTG
1 ACATAATTTGAAGTTTATGTGATTGTTG
89468554 ACATAATTTGAAGTTTATGTGATTGTTG
1 ACATAATTTGAAGTTTATGTGATTGTTG
89468582 A
1 A
89468583 TGTTAACACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.46
Consensus pattern (28 bp):
ACATAATTTGAAGTTTATGTGATTGTTG
Found at i:89486275 original size:45 final size:45
Alignment explanation
Indices: 89486211--89486341 Score: 176
Period size: 45 Copynumber: 3.0 Consensus size: 45
89486201 GTTGTACAGT
* *
89486211 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAAAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAC
* * *
89486256 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAC
* * *
89486301 ATTTTTTGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGAA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
89486342 TAAACTCGGG
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 12 0.16
44 14 0.18
45 51 0.66
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAC
Found at i:89494315 original size:45 final size:45
Alignment explanation
Indices: 89494251--89494381 Score: 185
Period size: 45 Copynumber: 3.0 Consensus size: 45
89494241 GTTGTACAGT
* *
89494251 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAAAC
1 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAC
* * *
89494296 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGAT
1 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAC
* *
89494341 ATTTTTCGGGCC-TTGAGCCTAGCAGGC-AAAATGCCGGTGAA
1 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
89494382 TAAATTCGGG
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 11 0.14
44 15 0.19
45 51 0.66
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (45 bp):
ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAC
Found at i:89494422 original size:86 final size:89
Alignment explanation
Indices: 89494250--89494423 Score: 205
Period size: 86 Copynumber: 2.0 Consensus size: 89
89494240 TGTTGTACAG
* * * *
89494250 TATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAAACATTATTCGGGCCTTTGAGC
1 TATTATTCGGGCCTTGGAGCCTAGCAGGCTAAAATGCCGGTGAAACA-TATTCGGGCCTTTAAAC
*
89494315 CTAGCAGGCTATAATACCGGTGAGA
65 CTAGCAGGCTAGAATACCGGTGAGA
* **
89494340 TATTTTTCGGGCCTT-GAGCCTAGCAGGC-AAAATGCCGGTGAATA-A-ATTCGGGTTTTTAAAA
1 TATTATTCGGGCCTTGGAGCCTAGCAGGCTAAAATGCCGGTGAA-ACATATTCGGGCCTTT-AAA
*
89494401 CCTAGCAGGCT-GAATGCCGGTGA
64 CCTAGCAGGCTAGAATACCGGTGA
89494424 ATTAATAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
86 20 0.27
87 12 0.16
88 13 0.18
89 14 0.19
90 14 0.19
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (89 bp):
TATTATTCGGGCCTTGGAGCCTAGCAGGCTAAAATGCCGGTGAAACATATTCGGGCCTTTAAACC
TAGCAGGCTAGAATACCGGTGAGA
Found at i:89501709 original size:11 final size:11
Alignment explanation
Indices: 89501690--89501724 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
89501680 AATGGTAGAT
89501690 TGAAAATTAAG
1 TGAAAATTAAG
*
89501701 TGTAAATTAAG
1 TGAAAATTAAG
*
89501712 TGAAAATAAAG
1 TGAAAATTAAG
89501723 TG
1 TG
89501725 GTCATCTTCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (11 bp):
TGAAAATTAAG
Found at i:89504691 original size:50 final size:50
Alignment explanation
Indices: 89504501--89504693 Score: 228
Period size: 50 Copynumber: 3.8 Consensus size: 50
89504491 ATTGTGAATA
* * * *
89504501 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTG-TTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGA-TGATTAGGT
* * * * * *
89504551 CTCATGTGTAGTACTAAGTGCAGGCTACTATGCATACTCA-ATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTA-TCAGATGA-TTAGGT
* *
89504602 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGATTAGGT
*
89504652 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGAT
89504694 AGCTTCGGCT
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
49 2 0.02
50 77 0.64
51 41 0.34
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGATTAGGT
Found at i:89504700 original size:101 final size:101
Alignment explanation
Indices: 89504501--89504684 Score: 298
Period size: 101 Copynumber: 1.8 Consensus size: 101
89504491 ATTGTGAATA
* * * *
89504501 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGTCTCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTGTGAAGTCACATGTGTAGTACT
89504566 AAGTGCAGGCTACTATGCATACTCAATGACTTCGAT
66 AAGTGCAGGCTACTATGCATACTCAATGACTTCGAT
* *
89504602 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGATGAGGTCACGTGTGTAGTAC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTG-TGAAGTCACATGTGTAGTAC
89504666 TAAGTGCAGGCTACTATGC
65 TAAGTGCAGGCTACTATGC
89504685 GTATCAGATA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
100 2 0.03
101 74 0.97
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTGTGAAGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCATACTCAATGACTTCGAT
Found at i:89506979 original size:39 final size:40
Alignment explanation
Indices: 89506879--89507103 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
89506869 TTGAATGATG
* * * *
89506879 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
89506919 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
89506959 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
89506998 TCCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
89507038 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
89507079 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
89507104 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 33 0.21
40 116 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:89507121 original size:80 final size:80
Alignment explanation
Indices: 89506970--89507136 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
89506960 CTGGGCTAAG
* * ** *
89506970 CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACT
1 CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACT
89507035 AAATCCGGGTT-AATT
66 AAATCC-GGTTAAATT
* *
89507050 CCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-
*
89507113 CTATATCCGGTTAAATT
64 CTAAATCCGGTTAAATT
89507130 -CCGAAGG
1 CCCGAAGG
89507137 TACGTGATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 12 0.16
80 62 0.82
81 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACT
AAATCCGGTTAAATT
Found at i:89518996 original size:42 final size:42
Alignment explanation
Indices: 89518931--89519012 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
89518921 CAGTTAATTG
** * * *
89518931 GCACTTAGTGTGTGAAATCGAGATAGTTTTGGTTATATATTT
1 GCACTTAGTGTACGAAATCGAGATAGCTTCGGCTATATATTT
* *
89518973 GCACTTAGTGTACGAGATTGAGATAGCTTCGGCTATATAT
1 GCACTTAGTGTACGAAATCGAGATAGCTTCGGCTATATAT
89519013 ATATATACAC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (42 bp):
GCACTTAGTGTACGAAATCGAGATAGCTTCGGCTATATATTT
Found at i:89520386 original size:13 final size:13
Alignment explanation
Indices: 89520370--89520394 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89520360 GAAGCACATG
89520370 GGAAGGTCACACT
1 GGAAGGTCACACT
89520383 GGAAGGTCACAC
1 GGAAGGTCACAC
89520395 GGGCGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.32, T:0.12
Consensus pattern (13 bp):
GGAAGGTCACACT
Found at i:89524264 original size:14 final size:13
Alignment explanation
Indices: 89524240--89524274 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
89524230 TTTATTAGGT
*
89524240 TTTATAATTTTTA
1 TTTACAATTTTTA
89524253 TTTAACAATTTTTA
1 TTT-ACAATTTTTA
89524267 TTTACAAT
1 TTTACAAT
89524275 CCATGTTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTACAATTTTTA
Found at i:89525474 original size:26 final size:27
Alignment explanation
Indices: 89525425--89525475 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
89525415 GTCAAAATTA
* * *
89525425 ACCCTAGGGGTATAACGGTCATTTTGC
1 ACCCTAGGGGTAAAACGATAATTTTGC
89525452 ACCC-AGGGGTAAAACGATAATTTT
1 ACCCTAGGGGTAAAACGATAATTTT
89525476 CATACTTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (27 bp):
ACCCTAGGGGTAAAACGATAATTTTGC
Done.