Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 27 of 343
Found at i:9189805 original size:100 final size:100
Alignment explanation
Indices: 9189628--9189827 Score: 357
Period size: 100 Copynumber: 2.0 Consensus size: 100
9189618 ACAAGAAACA
9189628 AGAAAAGCCATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATAGAAATCTGCTT
1 AGAAAAGCCATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATAGAAATCTGCTT
9189693 CAGAGTCAGCTTCAATGGTG-TTTTCTGAGTTGTTT
66 CAGAGTCAGCTTCAATGGTGTTTTTC-GAGTTGTTT
* *
9189728 AGAAAAGTCATAATGAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATAGAAATCTGCTT
1 AGAAAAGCCATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATAGAAATCTGCTT
*
9189793 CAGAGTCGGCTTCAATGGTGTTTTTCGAGTTGTTT
66 CAGAGTCAGCTTCAATGGTGTTTTTCGAGTTGTTT
9189828 TCTTTAATAA
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
100 91 0.95
101 5 0.05
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (100 bp):
AGAAAAGCCATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATAGAAATCTGCTT
CAGAGTCAGCTTCAATGGTGTTTTTCGAGTTGTTT
Found at i:9193945 original size:21 final size:22
Alignment explanation
Indices: 9193921--9193977 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
9193911 TATATAAAAT
*
9193921 ATTATTATTTATA-TATTATCC
1 ATTATTATTTATATTATTATAC
9193942 ATTATATTATTTATATTATTATAC
1 A-T-TATTATTTATATTATTATAC
9193966 ATT-TTATTTATA
1 ATTATTATTTATA
9193978 AATTTTATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 10 0.31
22 2 0.06
23 12 0.38
24 8 0.25
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (22 bp):
ATTATTATTTATATTATTATAC
Found at i:9193995 original size:7 final size:7
Alignment explanation
Indices: 9193881--9194010 Score: 53
Period size: 7 Copynumber: 19.0 Consensus size: 7
9193871 ATTAAATACC
9193881 TTATATA
1 TTATATA
*
9193888 TTATTTA
1 TTATATA
9193895 TT-T-T-
1 TTATATA
*
9193899 TTAAATA
1 TTATATA
9193906 TTAGTTATA
1 TTA--TATA
* *
9193915 TAAAATA
1 TTATATA
9193922 TTAT-TA
1 TTATATA
9193928 TTTATATA
1 -TTATATA
**
9193936 TTATCCA
1 TTATATA
9193943 TTATATTA
1 TTATA-TA
9193951 TTTATATTA
1 -TTATA-TA
*
9193960 TTATACA
1 TTATATA
*
9193967 TTTTAT-
1 TTATATA
*
9193973 TTATAAA
1 TTATATA
9193980 TT-T-TA
1 TTATATA
9193985 TTATATA
1 TTATATA
*
9193992 TTATATG
1 TTATATA
9193999 TTAT-TA
1 TTATATA
9194005 -TATATA
1 TTATATA
9194011 CTATTCCTTA
Statistics
Matches: 91, Mismatches: 19, Indels: 27
0.66 0.14 0.20
Matches are distributed among these distances:
4 2 0.02
5 7 0.08
6 13 0.14
7 48 0.53
8 8 0.09
9 13 0.14
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (7 bp):
TTATATA
Found at i:9194065 original size:22 final size:23
Alignment explanation
Indices: 9193934--9194065 Score: 72
Period size: 24 Copynumber: 5.5 Consensus size: 23
9193924 ATTATTTATA
* * *
9193934 TATTATCCATTATATTATTTATAT
1 TATTATTCATTATGTTA-TTATTT
* *
9193958 TATTATACATTTTAT-TTATAAATTT
1 TATTATTCA--TTATGTTAT-TATTT
*
9193983 TATTATAT-ATTATATGTTATTATATA
1 TATTAT-TCA-T-TATGTTATTAT-TT
* * *
9194009 TACTATTCCTTATGTTTTTATTT
1 TATTATTCATTATGTTATTATTT
**
9194032 TATTATAAATTATG-TATTATTT
1 TATTATTCATTATGTTATTATTT
9194054 TATTATTCATTA
1 TATTATTCATTA
9194066 ATTGTCTAGA
Statistics
Matches: 83, Mismatches: 17, Indels: 18
0.70 0.14 0.15
Matches are distributed among these distances:
22 17 0.20
23 11 0.13
24 21 0.25
25 20 0.24
26 14 0.17
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (23 bp):
TATTATTCATTATGTTATTATTT
Found at i:9194144 original size:11 final size:9
Alignment explanation
Indices: 9194128--9194216 Score: 63
Period size: 10 Copynumber: 8.9 Consensus size: 9
9194118 ATATTATCCT
9194128 TATTTATATGA
1 TATTTAT-T-A
9194139 TATTTATTA
1 TATTTATTA
9194148 TATTTATTTA
1 TATTTA-TTA
9194158 TATTTCATTA
1 TATTT-ATTA
9194168 TATTTTATTTA
1 TA-TTTA-TTA
9194179 TATATT-TTA
1 TAT-TTATTA
* *
9194188 TTACTTATCA
1 -TATTTATTA
9194198 TATATTATTA
1 TAT-TTATTA
9194208 TATATTATT
1 TAT-TTATT
9194217 CCCTGTATTA
Statistics
Matches: 66, Mismatches: 4, Indels: 17
0.76 0.05 0.20
Matches are distributed among these distances:
9 14 0.21
10 34 0.52
11 18 0.27
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (9 bp):
TATTTATTA
Found at i:9194145 original size:15 final size:14
Alignment explanation
Indices: 9194127--9194189 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 14
9194117 TATATTATCC
9194127 TTATTTATATGATAT
1 TTATTTATAT-ATAT
*
9194142 TTA-TTATATTTAT
1 TTATTTATATATAT
9194155 TTATATT-TCATTATATT
1 TTAT-TTAT-A-TATA-T
9194172 TTATTTATATAT-T
1 TTATTTATATATAT
9194185 TTATT
1 TTATT
9194190 ACTTATCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
13 12 0.30
14 7 0.17
15 9 0.22
16 6 0.15
17 6 0.15
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (14 bp):
TTATTTATATATAT
Found at i:9194146 original size:24 final size:23
Alignment explanation
Indices: 9194111--9194160 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
9194101 TAAATAATAG
*
9194111 TATGTATATATTATCCTTATTTA
1 TATGTATATATTATACTTATTTA
* *
9194134 TATGATATTTATTATATTTATTTA
1 TATG-TATATATTATACTTATTTA
9194158 TAT
1 TAT
9194161 TTCATTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (23 bp):
TATGTATATATTATACTTATTTA
Found at i:9194176 original size:21 final size:19
Alignment explanation
Indices: 9194128--9194216 Score: 74
Period size: 20 Copynumber: 4.4 Consensus size: 19
9194118 ATATTATCCT
*
9194128 TATTTATATGATATTTATTA
1 TATTTAT-TTATATTTATTA
9194148 TATTTATTTATATTTCATTA
1 TATTTATTTATATTT-ATTA
9194168 TATTTTATTTATATATT-TTA
1 TA-TTTATTTATAT-TTATTA
* *
9194188 TTACTTA-TCATATATTATTA
1 -TATTTATTTATAT-TTATTA
9194208 TATATTATT
1 TAT-TTATT
9194217 CCCTGTATTA
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
19 17 0.29
20 25 0.43
21 14 0.24
22 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (19 bp):
TATTTATTTATATTTATTA
Found at i:9194188 original size:20 final size:21
Alignment explanation
Indices: 9194127--9194213 Score: 74
Period size: 21 Copynumber: 4.0 Consensus size: 21
9194117 TATATTATCC
9194127 TTATTTATATGATATTTATTATAT
1 TTATTTATAT-AT-TTTA-TATAT
9194151 TTATTTATAT-TTCATTATAT-T
1 TTATTTATATATT--TTATATAT
*
9194172 TTATTTATATATTTTAT-TAC
1 TTATTTATATATTTTATATAT
*
9194192 TTA-TCATATATTATTATATAT
1 TTATTTATATATT-TTATATAT
9194213 T
1 T
9194214 ATTCCCTGTA
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
19 9 0.17
20 11 0.20
21 15 0.28
22 6 0.11
23 3 0.06
24 10 0.19
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.63
Consensus pattern (21 bp):
TTATTTATATATTTTATATAT
Found at i:9194205 original size:17 final size:16
Alignment explanation
Indices: 9194166--9194207 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
9194156 TATATTTCAT
*
9194166 TATATT-TTATTTATA
1 TATATTATTACTTATA
*
9194181 TATTTTATTACTTATCA
1 TATATTATTACTTAT-A
9194198 TATATTATTA
1 TATATTATTA
9194208 TATATTATTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 5 0.23
16 7 0.32
17 10 0.45
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (16 bp):
TATATTATTACTTATA
Found at i:9194210 original size:10 final size:10
Alignment explanation
Indices: 9194138--9194216 Score: 69
Period size: 10 Copynumber: 8.0 Consensus size: 10
9194128 TATTTATATG
9194138 ATAT-TTATT
1 ATATATTATT
9194147 ATAT-TTATT
1 ATATATTATT
9194156 -TATATTTCATT
1 ATATA-TT-ATT
*
9194167 ATATTTTATTT
1 ATATATTA-TT
9194178 ATATATT-TT
1 ATATATTATT
*
9194187 AT-TACTTATC
1 ATATA-TTATT
9194197 ATATATTATT
1 ATATATTATT
9194207 ATATATTATT
1 ATATATTATT
9194217 CCCTGTATTA
Statistics
Matches: 58, Mismatches: 4, Indels: 15
0.75 0.05 0.19
Matches are distributed among these distances:
8 5 0.09
9 15 0.26
10 20 0.34
11 15 0.26
12 3 0.05
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (10 bp):
ATATATTATT
Found at i:9204135 original size:221 final size:219
Alignment explanation
Indices: 9203744--9204287 Score: 722
Period size: 221 Copynumber: 2.5 Consensus size: 219
9203734 TAACAGGCTA
* *
9203744 AAGCATAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCT
1 AAGCATAGCAGATTTGGCCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCT
* * *
9203809 GTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGGAAAGCAGATCG
66 GTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGAACCTCCATATTCGACGGAAAGCAGATCG
* *
9203874 AAGACATAACAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATC
131 AAGACATAACAGATCTAACATTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATC
*
9203939 CTTGCGTTTACAAGGAGTAGATAG
196 CTTGCGTTTACAAGGAGCAGATAG
* * *
9203963 AAGACATAGCAGATTTGGCTTTCACA-TGTTTACGCTGAAGCAAGATCTAAGATGATTTGGCATC
1 AAG-CATAGCAGATTTGGCCTTCA-AGTGTTTACACTGAAGC-AGATCCAAGATGATTTGGCATC
* * * *
9204027 TCTGTATTGTCAGAGAGCAAATCGAAGGAACATATTTGGAACCTCCATATTCGACGGAGAGCAGA
63 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGAACCTCCATATTCGACGGAAAGCAGA
** *
9204092 TCGAAGACATAGTAGATCTAACATTCGGATGTTTTCGCATCGAAGCAGATCCAAGATGATTTGGC
128 TCGAAGACATAACAGATCTAACATTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
*
9204157 ATCCTTGCGTTTACAAGGAGCAGATCG
193 ATCCTTGCGTTTACAAGGAGCAGATAG
** * * *
9204184 AAG-ATAGCAGATTTGGTATCTCTA-TATTGT-CA--GAGAGCAGATCGAAGATAGCAGGTTTGG
1 AAGCATAGCAGATTTGGCCT-TCAAGTGTT-TACACTGA-AGCAGATCCAAGAT-G-A--TTTGG
*
9204244 CATCTCTGTATTGTCAGAGAACAGATCGAAGATAACAGATTTGG
59 CATCTCTGTATTGTCAGAGAACAAATCGAAGA-AACAGATTTGG
9204288 TATTCCTAAG
Statistics
Matches: 285, Mismatches: 29, Indels: 19
0.86 0.09 0.06
Matches are distributed among these distances:
217 12 0.04
218 4 0.01
219 23 0.08
220 34 0.12
221 202 0.71
222 10 0.04
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (219 bp):
AAGCATAGCAGATTTGGCCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCT
GTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGAACCTCCATATTCGACGGAAAGCAGATCG
AAGACATAACAGATCTAACATTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATC
CTTGCGTTTACAAGGAGCAGATAG
Found at i:9204222 original size:44 final size:44
Alignment explanation
Indices: 9204174--9204290 Score: 189
Period size: 44 Copynumber: 2.7 Consensus size: 44
9204164 CGTTTACAAG
9204174 GAGCAGATCGAAGATAGCAGATTTGGTATCTCTATATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGTATCTCTATATTGTCAGA
* * *
9204218 GAGCAGATCGAAGATAGCAGGTTTGGCATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGTATCTCTATATTGTCAGA
* *
9204262 GAACAGATCGAAGATAACAGATTTGGTAT
1 GAGCAGATCGAAGATAGCAGATTTGGTAT
9204291 TCCTAAGTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.27
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGTATCTCTATATTGTCAGA
Found at i:9205889 original size:12 final size:12
Alignment explanation
Indices: 9205874--9205935 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
9205864 GTTATATAAA
9205874 ATATTATTATTT
1 ATATTATTATTT
**
9205886 ATA-TATTATCC
1 ATATTATTATTT
9205897 AT-TATATTATTT
1 ATAT-TATTATTT
9205909 ATATTATTATTAT
1 ATATTATTATT-T
*
9205922 ACATT-TTATTT
1 ATATTATTATTT
9205933 ATA
1 ATA
9205936 AATTTTATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
11 11 0.28
12 23 0.57
13 6 0.15
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (12 bp):
ATATTATTATTT
Found at i:9206023 original size:22 final size:23
Alignment explanation
Indices: 9205953--9206023 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 23
9205943 TTATATACTA
* * *
9205953 TATGTTATTATATATACTATTCCT
1 TATGTTATTAT-TTTATTATTCAT
* **
9205977 TATGTTTTTATTTTATTATAAAT
1 TATGTTATTATTTTATTATTCAT
9206000 TATG-TATTATTTTATTATTCAT
1 TATGTTATTATTTTATTATTCAT
9206022 TA
1 TA
9206024 ATTGTCTAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 17 0.45
23 11 0.29
24 10 0.26
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.61
Consensus pattern (23 bp):
TATGTTATTATTTTATTATTCAT
Found at i:9206135 original size:21 final size:19
Alignment explanation
Indices: 9206087--9206140 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
9206077 ATACTATCCT
* *
9206087 TATTTATATGATATTTATTG
1 TATTTAT-TTATATTTATTA
9206107 TATTTATTTATATTTCATTA
1 TATTTATTTATATTT-ATTA
9206127 TATTTTATTTATAT
1 TA-TTTATTTATAT
9206141 ATTTTATTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 7 0.23
20 12 0.40
21 11 0.37
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (19 bp):
TATTTATTTATATTTATTA
Found at i:9206147 original size:20 final size:21
Alignment explanation
Indices: 9206086--9206172 Score: 56
Period size: 21 Copynumber: 4.0 Consensus size: 21
9206076 TATACTATCC
*
9206086 TTATTTATATGATATTTATTGTAT
1 TTATTTATAT-AT-TTTA-TATAT
9206110 TTATTTATAT-TTCATTATAT-T
1 TTATTTATATATT--TTATATAT
*
9206131 TTATTTATATATTTTAT-TAC
1 TTATTTATATATTTTATATAT
**
9206151 TTA-CCATATATTATTATATAT
1 TTATTTATATATT-TTATATAT
9206172 T
1 T
9206173 ATTCCCTATA
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
19 8 0.15
20 11 0.21
21 15 0.29
22 5 0.10
23 3 0.06
24 10 0.19
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (21 bp):
TTATTTATATATTTTATATAT
Found at i:9206171 original size:10 final size:10
Alignment explanation
Indices: 9206097--9206175 Score: 51
Period size: 10 Copynumber: 8.0 Consensus size: 10
9206087 TATTTATATG
9206097 ATAT-TTATT
1 ATATATTATT
*
9206106 GTAT-TTATT
1 ATATATTATT
9206115 -TATATTTCATT
1 ATATA-TT-ATT
*
9206126 ATATTTTATTT
1 ATATATTA-TT
9206137 ATATATT-TT
1 ATATATTATT
**
9206146 AT-TACTTACC
1 ATATA-TTATT
9206156 ATATATTATT
1 ATATATTATT
9206166 ATATATTATT
1 ATATATTATT
9206176 CCCTATATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 15
0.71 0.09 0.19
Matches are distributed among these distances:
8 5 0.09
9 14 0.25
10 18 0.33
11 15 0.27
12 3 0.05
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (10 bp):
ATATATTATT
Found at i:9213490 original size:22 final size:22
Alignment explanation
Indices: 9213465--9213506 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
9213455 ATTTTTTTTA
* * *
9213465 AATCGAGTTTTAGGAAAATGGG
1 AATCGACTTTAAGAAAAATGGG
9213487 AATCGACTTTAAGAAAAATG
1 AATCGACTTTAAGAAAAATG
9213507 AAAACGGGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.26
Consensus pattern (22 bp):
AATCGACTTTAAGAAAAATGGG
Found at i:9214932 original size:17 final size:17
Alignment explanation
Indices: 9214910--9214943 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
9214900 ATATCATATA
9214910 ATATCATATCTAAGATT
1 ATATCATATCTAAGATT
9214927 ATATCATATCTAAGATT
1 ATATCATATCTAAGATT
9214944 GCATATCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (17 bp):
ATATCATATCTAAGATT
Found at i:9215507 original size:86 final size:87
Alignment explanation
Indices: 9215339--9215507 Score: 209
Period size: 86 Copynumber: 2.0 Consensus size: 87
9215329 TTCTGACAAT
* *
9215339 ACAAAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAGCCAAATCTGCTGTGT
1 ACAAAGATGCCAAATCATCTTAGATCTGCTTCAGTGAAAACACGTGAAAGCCAAATCTGCTATGT
*
9215404 CTTCAATTTTCTCCTTGTGAAC
66 CTTCAATTTGCTCCTTGTGAAC
* * * * *
9215426 ACAAGGATGCCAAATCATCTTGGATCTGC-TCAGT-AAAATCATC-TGAAGGTCAGATCTGCTAT
1 ACAAAGATGCCAAATCATCTTAGATCTGCTTCAGTGAAAA-CA-CGTGAAAGCCAAATCTGCTAT
* *
9215488 GTCTTTAATTTGCTTCTTGT
64 GTCTTCAATTTGCTCCTTGT
9215508 AAACTTATGA
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
85 3 0.04
86 39 0.56
87 28 0.40
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (87 bp):
ACAAAGATGCCAAATCATCTTAGATCTGCTTCAGTGAAAACACGTGAAAGCCAAATCTGCTATGT
CTTCAATTTGCTCCTTGTGAAC
Found at i:9216364 original size:205 final size:205
Alignment explanation
Indices: 9215577--9216733 Score: 1852
Period size: 204 Copynumber: 5.7 Consensus size: 205
9215567 AAATCTGTTT
* * *
9215577 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCCTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
** * * *
9215642 ACGAAAACCAAATCTGCTATGCCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
9215707 GGATCTGCTTCAG--T---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
9215767 AGATGCCAGA
196 AGATGCCAGA
* * *
9215777 CTTCTATTTGTTCTCTGACAATACAGAGATGCCAAATCCTCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
9215842 GTG-AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
9215906 GGGTCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
9215971 AGATGCCAGA
196 AGATGCCAGA
* * *
9215981 CTTCAATTTTTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
9216046 GTG-AAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGTCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
9216110 GGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATAG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
9216175 AGATGCCAGA
196 AGATGCCAGA
*
9216185 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
9216250 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTTCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
9216315 GGATTTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
9216380 AGATGCCAGA
196 AGATGCCAGA
* *
9216390 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGTGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
9216455 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
9216520 GGATCTGCTTCAG--T---CATCTGAAGGTTAGATCTGCGATATATCTACTCTCCGCCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
9216580 AGATGCCAAA
196 AGATGCCAGA
* *
9216590 CTTCAATTTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * * ** *
9216655 GCGAAAACCAAATAAGCTATGTTTTCGATTTGCTCAGTGTAAGAACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
9216720 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
9216734 CCAGATCTGC
Statistics
Matches: 896, Mismatches: 54, Indels: 13
0.93 0.06 0.01
Matches are distributed among these distances:
199 69 0.08
200 233 0.26
201 9 0.01
203 1 0.00
204 315 0.35
205 269 0.30
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:9217694 original size:6 final size:6
Alignment explanation
Indices: 9217685--9217737 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
9217675 ATTTTTCTTT
* *
9217685 TTTTTC TTTTTA TATTTTT TTTTCTC TTTTTC -TTTTC TTTTTC TTTTT-
1 TTTTTC TTTTTC T-TTTTC TTTT-TC TTTTTC TTTTTC TTTTTC TTTTTC
9217733 TTTTT
1 TTTTT
9217738 TGAAATAGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
5 10 0.24
6 21 0.51
7 10 0.24
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:9217705 original size:18 final size:17
Alignment explanation
Indices: 9217682--9217738 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 17
9217672 TCCATTTTTC
9217682 TTTTTTTTCTTTTTATAT
1 TTTTTTTTCTTTTT-TAT
*
9217700 TTTTTTTTCTCTTTTTCT
1 TTTTTTTTCT-TTTTTAT
9217718 TTTCTTTTTCTTTTTT-T
1 TTT-TTTTTCTTTTTTAT
9217735 TTTT
1 TTTT
9217739 GAAATAGAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
16 1 0.03
17 4 0.11
18 20 0.56
19 11 0.31
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.86
Consensus pattern (17 bp):
TTTTTTTTCTTTTTTAT
Found at i:9217714 original size:11 final size:11
Alignment explanation
Indices: 9217677--9217736 Score: 58
Period size: 10 Copynumber: 5.9 Consensus size: 11
9217667 GCCTCTCCAT
9217677 TTTTC-TTTT-
1 TTTTCTTTTTC
*
9217686 TTTTCTTTTTA
1 TTTTCTTTTTC
*
9217697 TATT-TTTTT-
1 TTTTCTTTTTC
*
9217706 TTCTCTTTTTC
1 TTTTCTTTTTC
9217717 TTTTCTTTTTC
1 TTTTCTTTTTC
9217728 TTTT-TTTTT
1 TTTTCTTTTT
9217737 TTGAAATAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
9 7 0.16
10 19 0.44
11 17 0.40
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:9217737 original size:11 final size:11
Alignment explanation
Indices: 9217682--9217737 Score: 58
Period size: 11 Copynumber: 4.7 Consensus size: 11
9217672 TCCATTTTTC
9217682 TTTTTTTTCTT
1 TTTTTTTTCTT
*
9217693 TTTATATTTTTTT
1 TTT-T-TTTTCTT
9217706 TTCTCTTTTTCTT
1 TT-T-TTTTTCTT
*
9217719 TTCTTTTTCTT
1 TTTTTTTTCTT
9217730 TTTTTTTT
1 TTTTTTTT
9217738 TGAAATAGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
11 18 0.49
12 1 0.03
13 16 0.43
14 2 0.05
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:9223144 original size:28 final size:28
Alignment explanation
Indices: 9223082--9223138 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
9223072 TAATCAAATG
9223082 TATAAAAGATAGGAATAAATATACATAT
1 TATAAAAGATAGGAATAAATATACATAT
9223110 TATAAAAGATAGGAATAAATATACATAT
1 TATAAAAGATAGGAATAAATATACATAT
9223138 T
1 T
9223139 TGAAAAATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.56, C:0.04, G:0.11, T:0.30
Consensus pattern (28 bp):
TATAAAAGATAGGAATAAATATACATAT
Found at i:9227542 original size:23 final size:22
Alignment explanation
Indices: 9227507--9227549 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
9227497 GTTAAATTAA
*
9227507 TAAAATAAAAAATTAAATGTTT
1 TAAAAAAAAAAATTAAATGTTT
*
9227529 TAAAAAAAAGAAATTACATGT
1 TAAAAAAAA-AAATTAAATGT
9227550 CATCTGCCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.30
Consensus pattern (22 bp):
TAAAAAAAAAAATTAAATGTTT
Found at i:9227683 original size:27 final size:29
Alignment explanation
Indices: 9227640--9227716 Score: 86
Period size: 27 Copynumber: 2.7 Consensus size: 29
9227630 ATAACGTTTG
* * *
9227640 ACAAGTTTATGTACCAAATT-GAACAAAA
1 ACAAATTTAGGTACCAAATTAGAAAAAAA
9227668 A-AAATTTAGGTACCAAATTAGGAAAAAAA
1 ACAAATTTAGGTACCAAATTA-GAAAAAAA
*
9227697 ATCAAATTTAGGTACAAAAT
1 A-CAAATTTAGGTACCAAAT
9227717 ATTATATTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 16 0.39
28 1 0.02
29 8 0.20
31 16 0.39
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.25
Consensus pattern (29 bp):
ACAAATTTAGGTACCAAATTAGAAAAAAA
Found at i:9227707 original size:31 final size:27
Alignment explanation
Indices: 9227645--9227716 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 27
9227635 GTTTGACAAG
* *
9227645 TTTATGTACCAAATTGAACAAAAAAAA
1 TTTAGGTACCAAATTGAAAAAAAAAAA
9227672 TTTAGGTACCAAATTAGGAAAAAAAATCAAA
1 TTTAGGTACCAAATT--GAAAAAAAA--AAA
*
9227703 TTTAGGTACAAAAT
1 TTTAGGTACCAAAT
9227717 ATTATATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 14 0.37
29 8 0.21
31 16 0.42
ACGTcount: A:0.53, C:0.10, G:0.11, T:0.26
Consensus pattern (27 bp):
TTTAGGTACCAAATTGAAAAAAAAAAA
Found at i:9228505 original size:32 final size:32
Alignment explanation
Indices: 9228462--9228524 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
9228452 TATTAAGAAT
*
9228462 GAATTTGGACATATAGTTGTCCAAATACATTA
1 GAATTTCGACATATAGTTGTCCAAATACATTA
* *
9228494 GAATTTCGACATATGGTTGTTCAAATACATT
1 GAATTTCGACATATAGTTGTCCAAATACATT
9228525 TATGTAACAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
GAATTTCGACATATAGTTGTCCAAATACATTA
Found at i:9229734 original size:38 final size:38
Alignment explanation
Indices: 9229683--9229814 Score: 174
Period size: 38 Copynumber: 3.5 Consensus size: 38
9229673 AACACACTAG
9229683 TTTGCTCATAAGAGCTATTCCATCTGATAACATGCCAA
1 TTTGCTCATAAGAGCTATTCCATCTGATAACATGCCAA
* * * *
9229721 TTTGCTTATAAGAGTTATTCTATATGATAACATGCCAA
1 TTTGCTCATAAGAGCTATTCCATCTGATAACATGCCAA
* * * * *
9229759 TTTGATCATAAGAGCTATTCCATCCGTTAACATGCTAG
1 TTTGCTCATAAGAGCTATTCCATCTGATAACATGCCAA
*
9229797 TTTGCTTATAAGAGCTAT
1 TTTGCTCATAAGAGCTAT
9229815 AATTGAAAAT
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 79 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (38 bp):
TTTGCTCATAAGAGCTATTCCATCTGATAACATGCCAA
Found at i:9235158 original size:28 final size:28
Alignment explanation
Indices: 9235095--9235245 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
9235085 ATATTAAGTC
*
9235095 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
9235122 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
9235150 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
9235178 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
9235206 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
9235235 CGCACACTTAG
1 CGCACACTTAG
9235246 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.19
28 76 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:9244705 original size:46 final size:49
Alignment explanation
Indices: 9244633--9244978 Score: 212
Period size: 48 Copynumber: 6.9 Consensus size: 49
9244623 TGATAGTAAG
*
9244633 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-ATATG-TGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATATGACGATAA
9244680 GGCCTAATGGCCG-TGTGATGAATGTGAAAGTGTATAATATGACGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATATGACGATAA
* **** * * * * **
9244728 GGCCTAATTGGCCAGAAAGTTG-TGGAAAAAAAAAATGGGGGGATGATTGTGAAAAAATATA
1 GGCCTAA-TGGCC-G-ATG-TGAT-G-AATGTGAAA---GTGTAT-AATATG--ACGATA-A
* * *
9244789 GTG-ATAA-GGCCTAATGGCCGATGTATGAATGTGAAAGTGTATAATATG-TGATAA
1 G-GCCTAATGGCC-GAT----G-TG-ATGAATGTGAAAGTGTATAATATGACGATAA
* * * *
9244843 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATACG-TGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATATGACGATAA
* *
9244891 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-ATATG-TGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATATGACGATAA
*
9244938 GGGCTCAAT-GCCGATGTGATGAATGTGAAAGTGTAT-ATATG
1 GGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATAATATG
9244979 TGACAGGGCG
Statistics
Matches: 239, Mismatches: 34, Indels: 52
0.74 0.10 0.16
Matches are distributed among these distances:
46 22 0.09
47 64 0.27
48 78 0.33
49 7 0.03
50 2 0.01
52 2 0.01
53 4 0.02
54 12 0.05
55 7 0.03
57 4 0.02
58 9 0.04
59 8 0.03
60 4 0.02
61 5 0.02
62 9 0.04
63 1 0.00
64 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (49 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATATGACGATAA
Found at i:9244720 original size:47 final size:48
Alignment explanation
Indices: 9244633--9244740 Score: 175
Period size: 46 Copynumber: 2.2 Consensus size: 48
9244623 TGATAGTAAG
*
9244633 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG-TGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGACGATAA
9244680 GGCCTAATGGCCG-TGTGATGAATGTGAAAGTGTATAATATGACGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-ATATGACGATAA
9244728 GGCCTAATTGGCC
1 GGCCTAA-TGGCC
9244741 AGAAAGTTGT
Statistics
Matches: 57, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
46 22 0.39
47 18 0.32
48 12 0.21
49 5 0.09
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.28
Consensus pattern (48 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGACGATAA
Found at i:9244869 original size:48 final size:48
Alignment explanation
Indices: 9244783--9245029 Score: 312
Period size: 47 Copynumber: 5.3 Consensus size: 48
9244773 ATTGTGAAAA
9244783 AATATAGTGATAAGGCCTAATGGCCGATGT-ATGAATGTGAAAGTGTAT
1 AATAT-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
9244831 AATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 AATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * *
9244879 TATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 AATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
9244927 -ATATGTGATAGGGGCTCAAT-GCCGATGTGATGAATGTGAAAGTGTAT
1 AATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * ** *
9244974 -ATATGTGA-CAGGGCGAGTGGCC-A-ACGATGGATGTGAAAGTGTAT
1 AATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
9245018 AA-ATGTGATAAG
1 AATATGTGATAAG
9245030 TCCCGAAGGC
Statistics
Matches: 181, Mismatches: 13, Indels: 13
0.87 0.06 0.06
Matches are distributed among these distances:
44 24 0.13
45 6 0.03
46 7 0.04
47 73 0.40
48 71 0.39
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (48 bp):
AATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:9244903 original size:95 final size:93
Alignment explanation
Indices: 9244784--9245029 Score: 331
Period size: 95 Copynumber: 2.6 Consensus size: 93
9244774 TTGTGAAAAA
*
9244784 ATATAGTGATAAGGCCTAATGGCCGATGTATGAATGTGAAAGTGTATAATATGTGATAAGGCCT-
1 ATATAGTGATAGGGCCTAATGGCCGATGTATGAATGTGAAAGTGTATAATATGTGATAAGGCCTC
9244848 AATGGCCGATGTGATGAATGTGAAAGTGT
66 AAT-GCCGATGTGATGAATGTGAAAGTGT
* *
9244877 ATTATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-ATATGTGATAGGGG
1 A-TATA-GTGATAGGGCCTAATGGCCGATGT-ATGAATGTGAAAGTGTATAATATGTGATAAGGC
9244941 CTCAATGCCGATGTGATGAATGTGAAAGTGT
63 CTCAATGCCGATGTGATGAATGTGAAAGTGT
* * * * * *
9244972 ATATATGTGACAGGG-CGAGTGGCCAACG-ATGGATGTGAAAGTGTATAA-ATGTGATAAG
1 ATATA-GTGATAGGGCCTAATGGCCGATGTATGAATGTGAAAGTGTATAATATGTGATAAG
9245030 TCCCGAAGGC
Statistics
Matches: 137, Mismatches: 11, Indels: 12
0.86 0.07 0.08
Matches are distributed among these distances:
91 26 0.19
92 1 0.01
93 10 0.07
94 16 0.12
95 63 0.46
96 21 0.15
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (93 bp):
ATATAGTGATAGGGCCTAATGGCCGATGTATGAATGTGAAAGTGTATAATATGTGATAAGGCCTC
AATGCCGATGTGATGAATGTGAAAGTGT
Found at i:9245196 original size:34 final size:36
Alignment explanation
Indices: 9245142--9245212 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 36
9245132 ATCGAGCTAA
* *
9245142 AGACCCGATGACTACGTGTGGGGATT-TGTCCGGGT
1 AGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
9245177 AGACCCG-TAACTTCGTGTGGAGATTATGTCCGGGT
1 AGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
9245212 A
1 A
9245213 AGACTTCGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
34 15 0.47
35 17 0.53
ACGTcount: A:0.20, C:0.20, G:0.34, T:0.27
Consensus pattern (36 bp):
AGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:9247130 original size:31 final size:31
Alignment explanation
Indices: 9247093--9247175 Score: 102
Period size: 29 Copynumber: 2.8 Consensus size: 31
9247083 GTTGTGAGAT
*
9247093 TGGCACTAAGTGTGCGTGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGTGGG-TTGAAAGTACA
* *
9247124 TGGCACTAAGTGTGC--GAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGTGGGTTGAAAGTACA
9247153 TGGCACTAAGTGTGCGT-GGTTGA
1 TGGCACTAAGTGTGCGTGGGTTGA
9247176 TTATTAAGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
28 5 0.11
29 20 0.45
30 4 0.09
31 15 0.34
ACGTcount: A:0.24, C:0.14, G:0.34, T:0.28
Consensus pattern (31 bp):
TGGCACTAAGTGTGCGTGGGTTGAAAGTACA
Found at i:9247596 original size:36 final size:39
Alignment explanation
Indices: 9247541--9247615 Score: 111
Period size: 38 Copynumber: 1.9 Consensus size: 39
9247531 CGAAGCATTT
9247541 TGCGAGTTACTAATTCCGGGCTAAG-CCGAAG-GCATTGG
1 TGCGAGTTACTAA-TCCGGGCTAAGCCCGAAGAGCATTGG
9247579 TGCGAGTTACTAA-CCGGGCTAAGTCCCGAAGAGCATT
1 TGCGAGTTACTAATCCGGGCTAAG-CCCGAAGAGCATT
9247616 CATGCTAGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
36 10 0.29
38 19 0.56
39 5 0.15
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (39 bp):
TGCGAGTTACTAATCCGGGCTAAGCCCGAAGAGCATTGG
Found at i:9247637 original size:40 final size:40
Alignment explanation
Indices: 9247592--9247745 Score: 175
Period size: 40 Copynumber: 3.9 Consensus size: 40
9247582 GAGTTACTAA
*
9247592 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTTT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
9247632 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAGGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
** * * * * *
9247672 CCGAACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
9247712 -CGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
9247746 CGTGTATTTG
Statistics
Matches: 97, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 27 0.28
40 70 0.72
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
Found at i:9251157 original size:47 final size:47
Alignment explanation
Indices: 9251004--9251386 Score: 624
Period size: 47 Copynumber: 8.1 Consensus size: 47
9250994 GAAATGATAG
9251004 TAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
9251050 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
9251099 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
9251146 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
9251195 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
9251242 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
9251289 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
9251336 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
9251383 TAAG
1 TAAG
9251387 TCCCGAAGGG
Statistics
Matches: 316, Mismatches: 16, Indels: 9
0.93 0.05 0.03
Matches are distributed among these distances:
46 23 0.07
47 200 0.63
49 93 0.29
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:9251167 original size:96 final size:96
Alignment explanation
Indices: 9251004--9251386 Score: 641
Period size: 96 Copynumber: 4.0 Consensus size: 96
9250994 GAAATGATAG
9251004 TAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
9251068 GTGATGAATGTGAAAGTGTATATATATGCGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
9251099 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
9251164 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* *
9251195 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
9251260 GTGATGAATGTGAAAGTG--TATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * *
9251289 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
9251354 GTGATGGATGTGAAAGTGTATA-A-ATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
9251383 TAAG
1 TAAG
9251387 TCCCGAAGGG
Statistics
Matches: 275, Mismatches: 10, Indels: 7
0.94 0.03 0.02
Matches are distributed among these distances:
94 97 0.35
95 24 0.09
96 154 0.56
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:9251561 original size:37 final size:37
Alignment explanation
Indices: 9251505--9251583 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
9251495 CCGAGCTCTA
* * *
9251505 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
9251542 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
9251579 AAGAC
1 AAGAC
9251584 TTCGAAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:9253594 original size:28 final size:28
Alignment explanation
Indices: 9253531--9253681 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
9253521 ATATTAAGTC
*
9253531 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
9253558 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
9253586 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
9253614 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
9253642 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
9253671 CGCACACTTAG
1 CGCACACTTAG
9253682 CACCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.19
28 76 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:9256299 original size:35 final size:35
Alignment explanation
Indices: 9256260--9256334 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
9256250 ACAAGTAAGC
*
9256260 TTATATCAAACTTGAGTATTTGGTTACATGTGAAT
1 TTATATCAAACATGAGTATTTGGTTACATGTGAAT
** * * *
9256295 TTATATTGAGCATGTGTATTTGGTTACATGTGAGT
1 TTATATCAAACATGAGTATTTGGTTACATGTGAAT
9256330 TTATA
1 TTATA
9256335 CTGAGCTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (35 bp):
TTATATCAAACATGAGTATTTGGTTACATGTGAAT
Found at i:9256326 original size:16 final size:16
Alignment explanation
Indices: 9256275--9256326 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
9256265 TCAAACTTGA
9256275 GTATTTGGTTACATGT
1 GTATTTGGTTACATGT
* **
9256291 GAATTTATATTGAGCATGT
1 GTATTT-GGTT-A-CATGT
9256310 GTATTTGGTTACATGT
1 GTATTTGGTTACATGT
9256326 G
1 G
9256327 AGTTTATACT
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
16 11 0.41
17 3 0.11
18 3 0.11
19 10 0.37
ACGTcount: A:0.23, C:0.06, G:0.25, T:0.46
Consensus pattern (16 bp):
GTATTTGGTTACATGT
Found at i:9261079 original size:27 final size:28
Alignment explanation
Indices: 9261048--9261186 Score: 164
Period size: 27 Copynumber: 5.1 Consensus size: 28
9261038 GTGACGAAGT
9261048 CACCAGATACAGATAT-TGTGGCAGAGC
1 CACCAGATACAGATATATGTGGCAGAGC
*
9261075 TACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATATATGTGGCAGAGC
9261102 CACCAGAT-CAGATA-ATTGTGGCAGAGC
1 CACCAGATACAGATATA-TGTGGCAGAGC
* *
9261129 CACTAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATATATGTGGCAGAGC
* * *
9261156 CACCAGAT-TAGATAAATTGTGGCATAGC
1 CACCAGATACAGATATA-TGTGGCAGAGC
9261184 CAC
1 CAC
9261187 TAGGACCCTT
Statistics
Matches: 96, Mismatches: 9, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
26 9 0.09
27 73 0.76
28 14 0.15
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (28 bp):
CACCAGATACAGATATATGTGGCAGAGC
Found at i:9261120 original size:54 final size:54
Alignment explanation
Indices: 9261048--9261186 Score: 208
Period size: 54 Copynumber: 2.6 Consensus size: 54
9261038 GTGACGAAGT
*
9261048 CACCAGATACAGAT-ATTGTGGCAGAGCTACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
* *
9261102 CACCAGATCAGATAATTGTGGCAGAGCCACTAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
* *
9261156 CACCAGATTAGATAAATTGTGGCATAGCCAC
1 CACCAGATCAGAT-AATTGTGGCAGAGCCAC
9261187 TAGGACCCTT
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 5 0.06
54 57 0.73
55 16 0.21
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:9268625 original size:27 final size:27
Alignment explanation
Indices: 9268580--9268733 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
9268570 AGGCTGCCAA
* * *
9268580 ATATTGTGACGGAGTCACCAGATACAG
1 ATATTGTGGCAGAGCCACCAGATACAG
9268607 ATATTGTGGCAGAGCCACCAGA-ACAG
1 ATATTGTGGCAGAGCCACCAGATACAG
9268633 ATATATGTGGCAGAGCCACCAGAT-CAG
1 ATAT-TGTGGCAGAGCCACCAGATACAG
* * *
9268660 ATAATTGTAGCATAGCCACCAG-GACAG
1 AT-ATTGTGGCAGAGCCACCAGATACAG
*
9268687 ATATATGTGGCAGAGCCACCAGAT-TAG
1 ATAT-TGTGGCAGAGCCACCAGATACAG
*
9268714 ATAAATTGTGGCATAGCCAC
1 AT--ATTGTGGCAGAGCCAC
9268734 TAGGACGCTT
Statistics
Matches: 108, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 81 0.75
28 15 0.14
29 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
ATATTGTGGCAGAGCCACCAGATACAG
Found at i:9268677 original size:54 final size:54
Alignment explanation
Indices: 9268595--9268733 Score: 217
Period size: 54 Copynumber: 2.6 Consensus size: 54
9268585 GTGACGGAGT
*
9268595 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
9268649 CACCAGATCAGATAATTGTAGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
9268703 CACCAGATTAGATAAATTGTGGCATAGCCAC
1 CACCAGATCAGAT-AATTGTGGCATAGCCAC
9268734 TAGGACGCTT
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 5 0.06
54 57 0.73
55 16 0.21
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:9272725 original size:22 final size:22
Alignment explanation
Indices: 9272700--9272754 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
9272690 ACAGGGGCAT
9272700 ACGCCCGTGTGGAAAAGGCAAC
1 ACGCCCGTGTGGAAAAGGCAAC
**
9272722 ACGCCCGTGTGGAAGGGGCAAC
1 ACGCCCGTGTGGAAAAGGCAAC
*
9272744 ATGCCCGTGTG
1 ACGCCCGTGTG
9272755 ATCAATTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.24, C:0.27, G:0.36, T:0.13
Consensus pattern (22 bp):
ACGCCCGTGTGGAAAAGGCAAC
Found at i:9285877 original size:21 final size:21
Alignment explanation
Indices: 9285847--9285929 Score: 80
Period size: 21 Copynumber: 3.9 Consensus size: 21
9285837 AACCCTTTAT
*
9285847 GTTATTACATCTGAACCCTAG
1 GTTATGACATCTGAACCCTAG
*
9285868 GTTATGACATGC-GAACCCCCTAT
1 GTTATGACAT-CTGAA--CCCTAG
*
9285891 GTTATTACA-CGTGAACCCTAG
1 GTTATGACATC-TGAACCCTAG
*
9285912 GTTATGACATGTGAACCC
1 GTTATGACATCTGAACCC
9285930 CCTATGTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
21 33 0.66
22 1 0.02
23 16 0.32
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (21 bp):
GTTATGACATCTGAACCCTAG
Found at i:9285892 original size:44 final size:44
Alignment explanation
Indices: 9285831--9285989 Score: 196
Period size: 44 Copynumber: 3.6 Consensus size: 44
9285821 TTTGTTTAAT
**
9285831 CATGTGAACCCTTTATGTTATTACATCTGAACCCTAGGTTATGA
1 CATGTGAACCCCCTATGTTATTACATCTGAACCCTAGGTTATGA
*
9285875 CATGCGAACCCCCTATGTTATTACA-CGTGAACCCTAGGTTATGA
1 CATGTGAACCCCCTATGTTATTACATC-TGAACCCTAGGTTATGA
* *
9285919 CATGTGAACCCCCTATGTTATTACATGC-GAGCTCTAGGTTATGA
1 CATGTGAACCCCCTATGTTATTACAT-CTGAACCCTAGGTTATGA
* * **
9285963 TATGTGAGCCCCAAACTGTTATTACAT
1 CATGTGAACCCCCTA-TGTTATTACAT
9285990 GCGAACCTTA
Statistics
Matches: 101, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
43 1 0.01
44 88 0.87
45 11 0.11
46 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (44 bp):
CATGTGAACCCCCTATGTTATTACATCTGAACCCTAGGTTATGA
Found at i:9285945 original size:23 final size:23
Alignment explanation
Indices: 9285831--9285945 Score: 121
Period size: 23 Copynumber: 5.2 Consensus size: 23
9285821 TTTGTTTAAT
**
9285831 CATGTGAACCCTTTATGTTATTA
1 CATGTGAACCCCCTATGTTATTA
* * *
9285854 CATCTGAA--CCCTAGGTTATGA
1 CATGTGAACCCCCTATGTTATTA
*
9285875 CATGCGAACCCCCTATGTTATTA
1 CATGTGAACCCCCTATGTTATTA
* * *
9285898 CACGTGAA--CCCTAGGTTATGA
1 CATGTGAACCCCCTATGTTATTA
9285919 CATGTGAACCCCCTATGTTATTA
1 CATGTGAACCCCCTATGTTATTA
9285942 CATG
1 CATG
9285946 CGAGCTCTAG
Statistics
Matches: 72, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
21 33 0.46
23 39 0.54
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (23 bp):
CATGTGAACCCCCTATGTTATTA
Found at i:9286610 original size:33 final size:33
Alignment explanation
Indices: 9286568--9286633 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
9286558 AGTGTGATAG
9286568 TTTAAAAAGTCATCAAAATCGAGCAACTGGGAT
1 TTTAAAAAGTCATCAAAATCGAGCAACTGGGAT
9286601 TTTAAAAAGTCATCAAAATCGAGCAACTGGGAT
1 TTTAAAAAGTCATCAAAATCGAGCAACTGGGAT
9286634 GGTAAGTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.24
Consensus pattern (33 bp):
TTTAAAAAGTCATCAAAATCGAGCAACTGGGAT
Found at i:9290794 original size:14 final size:12
Alignment explanation
Indices: 9290749--9290807 Score: 57
Period size: 13 Copynumber: 4.7 Consensus size: 12
9290739 CAGCTTAGCG
*
9290749 ATATTTCTAAAA
1 ATATTTTTAAAA
9290761 A-AGTTTTTAAAA
1 ATA-TTTTTAAAA
*
9290773 AGTGTTTTTAAAA
1 A-TATTTTTAAAA
9290786 ATTATTTTTAAGAA
1 A-TATTTTTAA-AA
9290800 ATATTTTT
1 ATATTTTT
9290808 TTATTTTATG
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
11 1 0.03
12 10 0.26
13 25 0.64
14 3 0.08
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (12 bp):
ATATTTTTAAAA
Found at i:9295577 original size:14 final size:14
Alignment explanation
Indices: 9295560--9295586 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9295550 TTTTTTAGTT
9295560 TAATTTTTGTTTTC
1 TAATTTTTGTTTTC
9295574 TAATTTTTGTTTT
1 TAATTTTTGTTTT
9295587 GTTTGTTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.74
Consensus pattern (14 bp):
TAATTTTTGTTTTC
Found at i:9299572 original size:46 final size:49
Alignment explanation
Indices: 9299470--9299589 Score: 117
Period size: 49 Copynumber: 2.5 Consensus size: 49
9299460 TTTCCCTTCC
* * *
9299470 CTTTTATTTATTTATTTATTATTTTATTATTATTATTAGTTATAATATTT
1 CTTTTCTTTATTTATTTATTATTTTAGTAGTATTATTAGTTAT-ATATTT
9299520 -TATTTCTTTA-TTATTTATTATTCTTAGT-GTATTATTAGTTAT-T-TTT
1 CT-TTTCTTTATTTATTTATTATT-TTAGTAGTATTATTAGTTATATATTT
* *
9299566 CTTTTC-TAATTCTATTTGTTATTT
1 CTTTTCTTTATT-TATTTATTATTT
9299590 CTTTAAATTA
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
45 2 0.03
46 9 0.15
47 12 0.20
49 26 0.43
50 11 0.18
ACGTcount: A:0.23, C:0.05, G:0.04, T:0.68
Consensus pattern (49 bp):
CTTTTCTTTATTTATTTATTATTTTAGTAGTATTATTAGTTATATATTT
Found at i:9299760 original size:22 final size:21
Alignment explanation
Indices: 9299735--9299779 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
9299725 TTTAAGTTAC
9299735 TTGTTATTATTATTATTTATTA
1 TTGTTATTATTATTATTT-TTA
*
9299757 TTGTTATTATTTTTATTTTTA
1 TTGTTATTATTATTATTTTTA
9299778 TT
1 TT
9299780 TTAAGCATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (21 bp):
TTGTTATTATTATTATTTTTA
Found at i:9301241 original size:6 final size:5
Alignment explanation
Indices: 9301212--9301246 Score: 52
Period size: 5 Copynumber: 6.6 Consensus size: 5
9301202 ATTAAGTCTA
9301212 TTTAT TTTAT TTTAT TTTATT TTTAGT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTA-T TTTA-T TTTAT TTT
9301247 TATGATTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
5 18 0.64
6 10 0.36
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:9305533 original size:26 final size:26
Alignment explanation
Indices: 9305494--9305549 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
9305484 TGATACAAAT
9305494 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGAGTTAGGTAAATGTTCCA
9305520 TGATAATG-GTTTAGGTAAATGTTCCA
1 TGATAATGAG-TTAGGTAAATGTTCCA
9305546 TGAT
1 TGAT
9305550 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 1 0.03
26 28 0.97
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGAGTTAGGTAAATGTTCCA
Found at i:9307253 original size:54 final size:54
Alignment explanation
Indices: 9307170--9307286 Score: 198
Period size: 54 Copynumber: 2.2 Consensus size: 54
9307160 AGGAAGCATC
* *
9307170 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
* *
9307224 TTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
9307278 CTGGTGGCT
1 CTGGTGGCT
9307287 CCACCACAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
Found at i:9307287 original size:27 final size:27
Alignment explanation
Indices: 9307170--9307286 Score: 150
Period size: 27 Copynumber: 4.3 Consensus size: 27
9307160 AGGAAGCATC
9307170 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTATGCCACATA-TATCTGAT
* *
9307197 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACATATATCTGAT
*
9307224 TTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTATGCCAC-ATATATCTGAT
*
9307251 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTATGCCACATATATCTGA-T
9307278 CTGGTGGCT
1 CTGGTGGCT
9307287 CCACCACAAT
Statistics
Matches: 79, Mismatches: 7, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 3 0.04
27 73 0.92
28 3 0.04
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTATGCCACATATATCTGAT
Found at i:9307293 original size:27 final size:27
Alignment explanation
Indices: 9307170--9307300 Score: 128
Period size: 27 Copynumber: 4.9 Consensus size: 27
9307160 AGGAAGCATC
*
9307170 CTGGTGGCTATGCCACA-ATTATCTGA-T
1 CTGGTGGCTCTGCCACATA-TATCT-ATT
* *
9307197 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTATT
* *
9307224 TTGGTGGCTATGCCACGAT-TATCTGA-T
1 CTGGTGGCTCTGCCAC-ATATATCT-ATT
9307251 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACATATATCTATT
**
9307278 CTGGTGGCTCCACCACA-ATATCT
1 CTGGTGGCTCTGCCACATATATCT
9307301 TTATCTAGTG
Statistics
Matches: 89, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
26 9 0.10
27 77 0.87
28 3 0.03
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTATT
Found at i:9326603 original size:30 final size:30
Alignment explanation
Indices: 9326545--9326604 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
9326535 TTCCTGAGCC
* * *
9326545 TAGGGGCAAAAGTGTAATTATGTAAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
* *
9326575 TAGGGGCAAAAATATAATTTTGCCAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
9326605 CGTATTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTATGCAAAAGTT
Found at i:9328457 original size:24 final size:24
Alignment explanation
Indices: 9328425--9328487 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
9328415 AAGGGTACAT
* *
9328425 TGGCACTATGTGTGCGGTGTAGTA
1 TGGCACTATGTGTGCGGAGTAGAA
*
9328449 TGGCACTATGTGTGCGGAGTTGAA
1 TGGCACTATGTGTGCGGAGTAGAA
*
9328473 TAGCACTATGTGTGC
1 TGGCACTATGTGTGC
9328488 TGATTTGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.19, C:0.14, G:0.35, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGAGTAGAA
Found at i:9328508 original size:26 final size:24
Alignment explanation
Indices: 9328427--9328497 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
9328417 GGGTACATTG
* * * *
9328427 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTTGAATA
9328451 GCACTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTTGAATA
* *
9328475 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCGGAGTTGAAT
9328498 GTCAACATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTTGAATA
Found at i:9336420 original size:24 final size:24
Alignment explanation
Indices: 9336388--9336450 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
9336378 AAAGGTACAT
* *
9336388 TGGCACTATGTGTGCGGTGTAGTA
1 TGGCACTATGTGTGCGGAGTAGAA
*
9336412 TGGCACTATGTGTGCGGAGTTGAA
1 TGGCACTATGTGTGCGGAGTAGAA
*
9336436 TAGCACTATGTGTGC
1 TGGCACTATGTGTGC
9336451 TGATTTGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.19, C:0.14, G:0.35, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGAGTAGAA
Found at i:9336471 original size:26 final size:24
Alignment explanation
Indices: 9336390--9336460 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
9336380 AGGTACATTG
* * * *
9336390 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTTGAATA
9336414 GCACTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTTGAATA
* *
9336438 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCGGAGTTGAAT
9336461 GTCAACATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTTGAATA
Found at i:9338238 original size:47 final size:46
Alignment explanation
Indices: 9338169--9338293 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 46
9338159 ATGGTTGAGT
* *
9338169 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGT-AACTAGGC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGTGAA-T--GC
*
9338215 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGC
1 -TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGTGAATGC
9338263 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
9338294 TATGGGTAGG
Statistics
Matches: 71, Mismatches: 3, Indels: 9
0.86 0.04 0.11
Matches are distributed among these distances:
46 31 0.44
47 28 0.39
48 4 0.06
50 6 0.08
51 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGTGAATGC
Found at i:9352499 original size:43 final size:44
Alignment explanation
Indices: 9352377--9352500 Score: 105
Period size: 43 Copynumber: 2.9 Consensus size: 44
9352367 AAAGCTCGTA
* *
9352377 CAACGCCAAC-GTCCTAGACGTGGTCTTACATAT-AACCAAATAT
1 CAACGCC-ACTGTCCTAGACATGGTCTTACATATAAATCAAATAT
* * * * * **
9352420 CGACGTCACTATCCCAGACAGGGTCTTACA-CGAAATCAAATA-
1 CAACGCCACTGTCCTAGACATGGTCTTACATATAAATCAAATAT
*
9352462 CAATGCCGA-TGTCCTAGACATGGTCTTACATATAAATCA
1 CAACGCC-ACTGTCCTAGACATGGTCTTACATATAAATCA
9352501 TAAGTTGATG
Statistics
Matches: 60, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
42 24 0.40
43 36 0.60
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (44 bp):
CAACGCCACTGTCCTAGACATGGTCTTACATATAAATCAAATAT
Found at i:9354481 original size:21 final size:21
Alignment explanation
Indices: 9354443--9354483 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9354433 TTGTCAAGGT
*
9354443 ATGTCACAACACCCTTCAGTA
1 ATGTCACAACACCATTCAGTA
**
9354464 ATGTCACAACTTCATTCAGT
1 ATGTCACAACACCATTCAGT
9354484 TTCGTTACGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.29
Consensus pattern (21 bp):
ATGTCACAACACCATTCAGTA
Found at i:9357022 original size:42 final size:43
Alignment explanation
Indices: 9356916--9357073 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
9356906 ATGTAATTTC
* * ** *
9356916 ATGTAAGGCCACGTCTGGGATGTTGGCATCGATTTGA-GATT-T
1 ATGTAAGACCATGTCTGGGACATTGGCATCGATAT-ATGATTAT
9356958 ACGTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATT-T
1 A--TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTAT
* * * * * *
9357001 CATGTAAAACCCTGTTTGGGACAGTGGGATCGATATTTGATTAT
1 -ATGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTAT
* *
9357045 ATGTAAGACCATGTCTAGGACGTTGGCAT
1 ATGTAAGACCATGTCTGGGACATTGGCAT
9357074 TGTACGACCT
Statistics
Matches: 92, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
42 27 0.29
43 37 0.40
44 28 0.30
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.32
Consensus pattern (43 bp):
ATGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTAT
Found at i:9358001 original size:32 final size:32
Alignment explanation
Indices: 9357965--9358029 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
9357955 TCTATTATGT
*
9357965 TAACTGAAATTAGTCTATGTGATATGGTCGAA
1 TAACTAAAATTAGTCTATGTGATATGGTCGAA
*
9357997 TAACTAAAATTAGTCTGTGTGATATGGTCGAA
1 TAACTAAAATTAGTCTATGTGATATGGTCGAA
9358029 T
1 T
9358030 TGGTGTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (32 bp):
TAACTAAAATTAGTCTATGTGATATGGTCGAA
Found at i:9363587 original size:44 final size:42
Alignment explanation
Indices: 9363512--9363622 Score: 125
Period size: 44 Copynumber: 2.6 Consensus size: 42
9363502 GAGATGTGAC
* ** * *
9363512 TTCGTGTAAGACCATGTTTGGGATGTTGGCATCG-ATTTGAGAT
1 TTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATAT--GAT
9363555 TTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATATGAT
1 TT-CGTGTAAGACCATGTCTGGGACATCGGCATCGTATATGAT
* *
9363598 TTCGTGTAAGACCCTATCTGGGACA
1 TTCGTGTAAGACCATGTCTGGGACA
9363623 CTGACATAGA
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 21 0.36
43 7 0.12
44 28 0.47
45 3 0.05
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
TTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATATGAT
Found at i:9364390 original size:13 final size:13
Alignment explanation
Indices: 9364374--9364398 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9364364 TATTTTAATA
9364374 TTATTTTTTGTGT
1 TTATTTTTTGTGT
9364387 TTATTTTTTGTG
1 TTATTTTTTGTG
9364399 AATTTTCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.16, T:0.76
Consensus pattern (13 bp):
TTATTTTTTGTGT
Found at i:9364412 original size:14 final size:15
Alignment explanation
Indices: 9364395--9364423 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9364385 GTTTATTTTT
9364395 TGTG-AATTTTCATG
1 TGTGAAATTTTCATG
9364409 TGTGAAATTTTCATG
1 TGTGAAATTTTCATG
9364424 AATTAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
TGTGAAATTTTCATG
Found at i:9367749 original size:47 final size:47
Alignment explanation
Indices: 9367665--9368443 Score: 1363
Period size: 47 Copynumber: 16.6 Consensus size: 47
9367655 TATTTGAATA
9367665 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
9367714 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
9367760 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
9367809 AATGTGAAA--GTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
9367854 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
9367901 AATGTGAAA-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
9367947 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
9367994 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
9368041 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
9368088 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
9368135 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
9368182 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
9368231 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
9368277 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
9368324 AATGTGAAA-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
9368370 AATGTGAAAGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
9368417 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
9368444 TCCCGAAGGG
Statistics
Matches: 704, Mismatches: 16, Indels: 22
0.95 0.02 0.03
Matches are distributed among these distances:
45 44 0.06
46 157 0.22
47 402 0.57
48 25 0.04
49 76 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:9367899 original size:22 final size:22
Alignment explanation
Indices: 9367871--9367945 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
9367861 AAGTGTATAT
9367871 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ****
9367893 ATGTGATGAATGTGAAATGTATAT
1 ATGTGAT-AAGGCCTAATG-GCCG
9367917 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
9367939 ATGTGAT
1 ATGTGAT
9367946 GAATGTGAAA
Statistics
Matches: 35, Mismatches: 16, Indels: 4
0.64 0.29 0.07
Matches are distributed among these distances:
22 14 0.40
23 14 0.40
24 7 0.20
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:9368322 original size:22 final size:22
Alignment explanation
Indices: 9368294--9368368 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
9368284 AAGTGTATAT
9368294 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ****
9368316 ATGTGATGAATGTGAAATGTATAT
1 ATGTGAT-AAGGCCTAATG-GCCG
9368340 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
9368362 ATGTGAT
1 ATGTGAT
9368369 GAATGTGAAA
Statistics
Matches: 35, Mismatches: 16, Indels: 4
0.64 0.29 0.07
Matches are distributed among these distances:
22 14 0.40
23 14 0.40
24 7 0.20
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:9368663 original size:37 final size:37
Alignment explanation
Indices: 9368562--9368663 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
9368552 TCGAGCTCTA
*
9368562 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
9368599 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
9368636 AAGACCCGATAACTTCATGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
9368664 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:9370027 original size:40 final size:40
Alignment explanation
Indices: 9369940--9370266 Score: 518
Period size: 40 Copynumber: 8.2 Consensus size: 40
9369930 GGGCTAAATC
9369940 CCGAAGAGCATTCGTGCTAGTGATGTATCCGG-CTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
*
9369979 TCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
9370019 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
9370059 CCGAAGAGCATTCGTGCTAGTGATGTATCCGG-CTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
9370098 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
9370138 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* **
9370178 CCGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAA-AC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCG-GACTAAGTT
* * * * * * *
9370217 CCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAGGTC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
9370257 CCGAAGAGCA
1 CCGAAGAGCA
9370267 ATCATGCTGG
Statistics
Matches: 273, Mismatches: 10, Indels: 9
0.93 0.03 0.03
Matches are distributed among these distances:
38 1 0.00
39 101 0.37
40 170 0.62
41 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
Found at i:9370049 original size:79 final size:80
Alignment explanation
Indices: 9369940--9370266 Score: 518
Period size: 79 Copynumber: 4.1 Consensus size: 80
9369930 GGGCTAAATC
*
9369940 CCGAAGAGCATTCGTGCTAGTGATGTATCCGG-CTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
9370004 TATCCGGACTAAGTT
66 TATCCGGACTAAGTT
9370019 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
9370084 TATCCGG-CTAAGTT
66 TATCCGGACTAAGTT
9370098 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
9370163 TATCCGGACTAAGTT
66 TATCCGGACTAAGTT
* ** * * *
9370178 CCGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAA-ACCCGAAGAGCATTTGTGCTGGTGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
* * * *
9370241 ATATCCGGGCTAGGTC
65 GTATCCGGACTAAGTT
9370257 CCGAAGAGCA
1 CCGAAGAGCA
9370267 ATCATGCTGG
Statistics
Matches: 234, Mismatches: 11, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
79 154 0.66
80 79 0.34
81 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
TATCCGGACTAAGTT
Found at i:9370129 original size:119 final size:119
Alignment explanation
Indices: 9369940--9370266 Score: 539
Period size: 119 Copynumber: 2.7 Consensus size: 119
9369930 GGGCTAAATC
*
9369940 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
9370005 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
66 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
9370059 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
9370124 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
66 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* ** * * * *
9370178 CCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCGAAGAGCATTTGTGCTGGTGTTA
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCG-GCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * *
9370242 TATCCGGGCTAGGTCCCGAAGAGCA
65 TATCCGGACTAAGTTCCGAAGAGCA
9370267 ATCATGCTGG
Statistics
Matches: 196, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
119 191 0.97
120 5 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (119 bp):
CCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
Found at i:9375061 original size:80 final size:78
Alignment explanation
Indices: 9374919--9375085 Score: 244
Period size: 80 Copynumber: 2.1 Consensus size: 78
9374909 GCTCCTCGTT
* *
9374919 CAAATGCCTTCGGGACATAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
1 CAAATGCCTTCGGGACATAACCCGGTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAA
9374984 TTAGTAACTCGCA
66 TTAGTAACTCGCA
* * * * *
9374997 CAAATGCCTTCGGGACTTAACCCGGAATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGGACATAACCCGG--TATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
*
9375062 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
9375077 CAAATGCCT
1 CAAATGCCT
9375086 CGGATCTTAG
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
78 23 0.29
80 56 0.71
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAACCCGGTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAA
TTAGTAACTCGCA
Found at i:9375095 original size:39 final size:39
Alignment explanation
Indices: 9374919--9375095 Score: 232
Period size: 39 Copynumber: 4.5 Consensus size: 39
9374909 GCTCCTCGTT
* *
9374919 CAAATGCCTTCGGGACATAGCCCGGTA-TAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAATTAGTAACTCGCA
* *
9374958 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
*
9374997 CAAATGCCTTCGGGACTTAACCCGGAATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAA-TTAGTAACTCGCA
* * *
9375038 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
9375077 CAAATGCC-TCGGATCTTAG
1 CAAATGCCTTCGGA-CTTAG
9375096 TTCCGAATAT
Statistics
Matches: 123, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
38 15 0.12
39 58 0.47
40 27 0.22
41 23 0.19
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:9385895 original size:40 final size:40
Alignment explanation
Indices: 9385851--9386020 Score: 258
Period size: 39 Copynumber: 4.3 Consensus size: 40
9385841 GCTCCTCGTT
* *
9385851 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
9385891 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
9385930 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
9385970 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
9386008 CAAATGCCTTCGG
1 CAAATGCCTTCGG
9386021 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
38 23 0.19
39 57 0.47
40 42 0.34
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:9386049 original size:78 final size:78
Alignment explanation
Indices: 9385851--9386067 Score: 242
Period size: 78 Copynumber: 2.8 Consensus size: 78
9385841 GCTCCTCGTT
* * * * * *
9385851 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCAC-AATGCCTTCGGGCTTAGCCCGGA
*
9385916 TTTAGTAACTCGCA
65 ATTAGTAACTCGCA
* *
9385930 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGCTTAGCCCGGAA
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAATGCCTTCGGGCTTAGCCCGGAA
*
9385995 TTAGTATCTCGCA
66 TTAGTAACTCGCA
** * * *
9386008 CAAATGCCTTC-GGATCTTAGTCC-GATATGGTCACTTAGCACAAAGCCTT-GGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAATGCCTTCGGG-CTTAGCC
9386068 GGACATCATT
Statistics
Matches: 120, Mismatches: 15, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
77 14 0.12
78 69 0.57
79 37 0.31
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAATGCCTTCGGGCTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:9390573 original size:23 final size:23
Alignment explanation
Indices: 9390533--9390623 Score: 85
Period size: 23 Copynumber: 3.9 Consensus size: 23
9390523 AGTTGATGGA
**
9390533 CAGTAAGCTCTATTGAGCTGAAG
1 CAGTAAGCTCTAACGAGCTGAAG
* * *
9390556 CGGTAAGCTCTAACGAGCTAAAA
1 CAGTAAGCTCTAACGAGCTGAAG
9390579 CAGTAAGCTC-ATACGAGCTGAGAG
1 CAGTAAGCTCTA-ACGAGCTGA-AG
* * *
9390603 TAGTAAGCTTTTACGAGCTGA
1 CAGTAAGCTCTAACGAGCTGA
9390624 TATATCGATA
Statistics
Matches: 54, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
22 1 0.02
23 35 0.65
24 18 0.33
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (23 bp):
CAGTAAGCTCTAACGAGCTGAAG
Found at i:9390611 original size:24 final size:23
Alignment explanation
Indices: 9390558--9390650 Score: 71
Period size: 24 Copynumber: 3.9 Consensus size: 23
9390548 AGCTGAAGCG
* * *
9390558 GTAAGCTC-TAACGAGCTAAAACA
1 GTAAGCTCAT-ACGAGCTGAGATA
9390581 GTAAGCTCATACGAGCTGAGAGTA
1 GTAAGCTCATACGAGCTGAGA-TA
** *
9390605 GTAAGCTTTTACGAGCTGATATA
1 GTAAGCTCATACGAGCTGAGATA
*
9390628 TCGATAAGCTCATACAAGCTGAG
1 --G-TAAGCTCATACGAGCTGAG
9390651 GTGAGTCCAC
Statistics
Matches: 55, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
23 19 0.35
24 20 0.36
25 1 0.02
26 15 0.27
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (23 bp):
GTAAGCTCATACGAGCTGAGATA
Found at i:9407054 original size:24 final size:24
Alignment explanation
Indices: 9407022--9407070 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
9407012 GACATAAGAG
9407022 TCAATATACTCCTTTTTGGTTATC
1 TCAATATACTCCTTTTTGGTTATC
9407046 TCAATATACTCCTTTTTGGTTATC
1 TCAATATACTCCTTTTTGGTTATC
9407070 T
1 T
9407071 TCATGGGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.08, T:0.51
Consensus pattern (24 bp):
TCAATATACTCCTTTTTGGTTATC
Found at i:9413325 original size:47 final size:47
Alignment explanation
Indices: 9413272--9413707 Score: 701
Period size: 47 Copynumber: 9.3 Consensus size: 47
9413262 ACAAGATATG
9413272 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
9413319 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
9413366 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
9413413 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
9413460 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
9413507 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
9413554 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * * *
9413601 TATATGAGATAAGACCTAATGGCCGATTTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
9413648 TATATGTGATAAGGCCGAATGGCCAATATGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
9413695 TAAATGTGATAAG
1 TATATGTGATAAG
9413708 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 32, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 357 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:9413466 original size:25 final size:25
Alignment explanation
Indices: 9413438--9413515 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
9413428 CTAATGGCCA
9413438 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
9413463 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
9413485 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
9413510 ATGTGA
1 ATGTGA
9413516 CAAGGCCTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:9420659 original size:29 final size:29
Alignment explanation
Indices: 9420602--9420661 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
9420592 GTTATAACCA
* * *
9420602 AACCTTTACATGCCATTGTTGACCAAATT
1 AACCTATACATGCCATTGATAACCAAATT
9420631 AACCTATACATGCCATT-ATAACCATAATT
1 AACCTATACATGCCATTGATAACCA-AATT
9420660 AA
1 AA
9420662 TTTACCATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (29 bp):
AACCTATACATGCCATTGATAACCAAATT
Found at i:9423345 original size:13 final size:14
Alignment explanation
Indices: 9423317--9423345 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9423307 AAATAATAAT
9423317 AAAATTAAATTAAA
1 AAAATTAAATTAAA
9423331 AAAATTAAATTAAA
1 AAAATTAAATTAAA
9423345 A
1 A
9423346 TATTAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAATTAAATTAAA
Found at i:9425176 original size:30 final size:30
Alignment explanation
Indices: 9425068--9425177 Score: 150
Period size: 30 Copynumber: 3.7 Consensus size: 30
9425058 TAAAGCCATT
* **
9425068 CATATCCCCACTAACT-TTCATTACGCCACC
1 CATATCCCCACTAACTCCT-ATTAAACCACC
* *
9425098 AATATCCCCACTAACTCCCATTAAACCACC
1 CATATCCCCACTAACTCCTATTAAACCACC
9425128 CATATCCCCACTAACTCCTATTAAACCACC
1 CATATCCCCACTAACTCCTATTAAACCACC
*
9425158 CATATCCCTACTAACTCCTA
1 CATATCCCCACTAACTCCTA
9425178 AATTTGATTA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
30 71 1.00
ACGTcount: A:0.32, C:0.43, G:0.01, T:0.25
Consensus pattern (30 bp):
CATATCCCCACTAACTCCTATTAAACCACC
Found at i:9443299 original size:78 final size:78
Alignment explanation
Indices: 9443164--9443315 Score: 207
Period size: 78 Copynumber: 1.9 Consensus size: 78
9443154 GATCTCAAAC
* *
9443164 ATCGCTAAATAATGAGTTGATGTTGCTCACTCAAGCTGTTAAGAATCCACAACTTATGTTAGATC
1 ATCGCTAAATAATGAATTGATGTTGCTCACTCAAGCTGTCAAGAATCCACAACTTATGTTAGATC
9443229 TCAACCATCACAG
66 TCAACCATCACAG
* * ** * *
9443242 ATCGCTAACTAAT-AATTCGATGTTGCTCACTCAAGCTGTCGAGAATCTGCAATTTATGTTGGAT
1 ATCGCTAAATAATGAATT-GATGTTGCTCACTCAAGCTGTCAAGAATCCACAACTTATGTTAGAT
*
9443306 CTTAACCATC
65 CTCAACCATC
9443316 GAGTAAATCT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
77 3 0.05
78 61 0.95
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (78 bp):
ATCGCTAAATAATGAATTGATGTTGCTCACTCAAGCTGTCAAGAATCCACAACTTATGTTAGATC
TCAACCATCACAG
Found at i:9448687 original size:28 final size:28
Alignment explanation
Indices: 9448647--9448735 Score: 142
Period size: 28 Copynumber: 3.2 Consensus size: 28
9448637 TGGGAAGTAG
9448647 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
9448675 TTGGGCCTGATGGGCCATATGAATGTAA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
9448703 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
9448731 TTGGG
1 TTGGG
9448736 ACTAAAGGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.21, C:0.15, G:0.37, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:9449093 original size:27 final size:27
Alignment explanation
Indices: 9449064--9449382 Score: 300
Period size: 27 Copynumber: 11.8 Consensus size: 27
9449054 GAAATAACTG
* * *
9449064 AAATACCCCCAATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCA
* *
9449091 AAATACCCTCGATTTATAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCA
* * *
9449118 AAATACCTTCGATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTATCA
* *
9449145 AAATACCCTCG-TTTGTGAAATTATTA
1 AAATACCCTCGATTTGTAAAATTATCA
* * *
9449171 AAATACCTTTGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCA
* * *
9449198 AAACACCCTCGATTTGTGAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCA
* *
9449225 AAACACCCTCGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCA
* * * * *
9449252 ACACACCATCGATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTATCA
** * *
9449279 AAATACCCTTAATTTATAAAATTACTAA
1 AAATACCCTCGATTTGTAAAATTA-TCA
* *
9449307 AAATAGCCTCGATTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCA
* * * *
9449334 AAACACCCCCGATTTTTAAAATTATAA
1 AAATACCCTCGATTTGTAAAATTATCA
*
9449361 AAATACCCTTG-TATTGTAAAAT
1 AAATACCCTCGAT-TTGTAAAAT
9449383 GACCGGCATA
Statistics
Matches: 234, Mismatches: 55, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
26 21 0.09
27 193 0.82
28 20 0.09
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTATCA
Found at i:9449134 original size:54 final size:54
Alignment explanation
Indices: 9449075--9449382 Score: 334
Period size: 54 Copynumber: 5.7 Consensus size: 54
9449065 AATACCCCCA
*
9449075 ATTTGTAAAATTATCGAAATACCCTCGATTTATAAAATTACCAAAATACCTTCG
1 ATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAATACCTTCG
* * ** *
9449129 ATTTGTAAAATTACCGAAATACCCTCG-TTTGTGAAATTATTAAAATACCTTTG
1 ATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAATACCTTCG
* * * *
9449182 ATTTGTAAAATTATCGAAACACCCTCGATTTGTGAAATTACCAAAACACCCTCG
1 ATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAATACCTTCG
* * * * *
9449236 ATTTGTAAAATTATCGACACACCATCGATTTGTAAAATTACCGAAATACCCTT-A
1 ATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAATA-CCTTCG
* ** * * **
9449290 ATTTATAAAATTACTAAAAATAGCCTCGATTTGTAAAATTACCAAAACACCCCCG
1 ATTTGTAAAATTA-TCGAAATACCCTCGATTTGTAAAATTACCAAAATACCTTCG
* ** *
9449345 ATTTTTAAAATTATAAAAATACCCTTG-TATTGTAAAAT
1 ATTTGTAAAATTATCGAAATACCCTCGAT-TTGTAAAAT
9449383 GACCGGCATA
Statistics
Matches: 214, Mismatches: 35, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
53 47 0.22
54 125 0.58
55 42 0.20
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (54 bp):
ATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAATACCTTCG
Found at i:9449240 original size:107 final size:108
Alignment explanation
Indices: 9449064--9449357 Score: 365
Period size: 107 Copynumber: 2.7 Consensus size: 108
9449054 GAAATAACTG
** * * *
9449064 AAATACCCCCAATTTGTAAAATTATCGAAATACCCTCGATTTATAAAATTACCAAAATACCTTCG
1 AAATACCCTTAATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAACACCCTCG
* * * **
9449129 ATTTGTAAAATTACCGAAATACCCTCG-TTTGTGAAATTATTA
66 ATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACCA
* * * *
9449171 AAATACCTTTGATTTGTAAAATTATCGAAACACCCTCGATTTGTGAAATTACCAAAACACCCTCG
1 AAATACCCTTAATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAACACCCTCG
* * *
9449236 ATTTGTAAAATTATCGACACACCATCGATTTGTAAAATTACCG
66 ATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACCA
* ** * *
9449279 AAATACCCTTAATTTATAAAATTACTAAAAATAGCCTCGATTTGTAAAATTACCAAAACACCCCC
1 AAATACCCTTAATTTGTAAAATTA-TCGAAATACCCTCGATTTGTAAAATTACCAAAACACCCTC
*
9449344 GATTTTTAAAATTA
65 GATTTGTAAAATTA
9449358 TAAAAATACC
Statistics
Matches: 158, Mismatches: 27, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
107 79 0.50
108 32 0.20
109 47 0.30
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (108 bp):
AAATACCCTTAATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAACACCCTCG
ATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACCA
Found at i:9449408 original size:109 final size:109
Alignment explanation
Indices: 9449204--9449414 Score: 246
Period size: 109 Copynumber: 1.9 Consensus size: 109
9449194 ATCGAAACAC
* * ** *
9449204 CCTCGATTTGTGAAATTACCAAAACACCCTCGATTTGTAAAATTATCGACACACCATCGATTTGT
1 CCTCGATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATAAAAACACCATCGATTTGT
* * **
9449269 AAAATTACCGAAATACCCTTAATTTATAAAATTACTAAAAATAG
66 AAAATGACCGAAATACCCCTAATGGATAAAATTACTAAAAATAG
* * * *
9449313 CCTCGATTTGTAAAATTACCAAAACACCCCCGATTTTTAAAATTATAAAAATACCCTTG-TATTG
1 CCTCGATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATAAAAACACCATCGAT-TTG
** *
9449377 TAAAATGACCGGCATACCCCT-ATAGGGTAAAATTACTA
65 TAAAATGACCGAAATACCCCTAAT-GGATAAAATTACTA
9449415 TTTTGCCATT
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
108 3 0.04
109 81 0.96
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (109 bp):
CCTCGATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATAAAAACACCATCGATTTGT
AAAATGACCGAAATACCCCTAATGGATAAAATTACTAAAAATAG
Found at i:9454583 original size:28 final size:28
Alignment explanation
Indices: 9454484--9454613 Score: 145
Period size: 28 Copynumber: 4.6 Consensus size: 28
9454474 TGGGAAGTAG
*
9454484 TTGGGCCTGATGGGCCATATGAATATGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
9454512 TTGAGTCTGATGGACCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
9454540 TTGGGCCTGATGGGCTATATGAATGT-A
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * *
9454567 TTTGGGCCTGATGGGCTATGTGAAAGAGA
1 -TTGGGCCTGATGGGCCATATGAATGTGA
*
9454596 TTGGGCCTAAATGGGCCA
1 TTGGGCCT-GATGGGCCA
9454614 ATTGAATAAG
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
27 1 0.01
28 77 0.90
29 8 0.09
ACGTcount: A:0.25, C:0.13, G:0.33, T:0.29
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:9454950 original size:27 final size:27
Alignment explanation
Indices: 9454920--9455043 Score: 142
Period size: 27 Copynumber: 4.6 Consensus size: 27
9454910 TAATAAAGAG
*
9454920 AAATTACTGAAATACCCTCGATTTCTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
9454947 AAATTACCGGAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
9454974 AAATTACTGAAATAGCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
9455001 AAATTACCAAAACACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
9455028 AAATTA-TCGAAATACC
1 AAATTACT-GAAATACC
9455044 TTTGTAGTGT
Statistics
Matches: 78, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:9455054 original size:27 final size:28
Alignment explanation
Indices: 9455024--9455085 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 28
9455014 ACCCCCGATT
* *
9455024 TGTAAAATTATC-GAAATACCTTTGTAG
1 TGTAAAATTAACTGAAATACCCTTGTAG
*
9455051 TGTAAAA-TAACTGATATACCCTTGTAG
1 TGTAAAATTAACTGAAATACCCTTGTAG
*
9455078 GGTAAAAT
1 TGTAAAAT
9455086 GATTGTTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (28 bp):
TGTAAAATTAACTGAAATACCCTTGTAG
Found at i:9455666 original size:27 final size:27
Alignment explanation
Indices: 9455607--9455666 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
9455597 AGATGGGCTA
* * *
9455607 GGCCCAATTGATTTTGTTATAGGCTGT
1 GGCCCAAATGATATTGTAATAGGCTGT
* *
9455634 GACCCAAATGATATTGTAATAGGCTTT
1 GGCCCAAATGATATTGTAATAGGCTGT
9455661 GGCCCA
1 GGCCCA
9455667 CGAATGCTCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.33
Consensus pattern (27 bp):
GGCCCAAATGATATTGTAATAGGCTGT
Found at i:9457938 original size:28 final size:28
Alignment explanation
Indices: 9457898--9457989 Score: 139
Period size: 28 Copynumber: 3.3 Consensus size: 28
9457888 TTAGAAGTAG
*
9457898 TTGGGCCTGATGGGCCATATAAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* *
9457926 TTGGGCCTGATGGGCCATACGAATGTAA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* *
9457954 TTGGGCCTGATGGGCCATGTGAACGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
9457982 TTGGGCCT
1 TTGGGCCT
9457990 AAAGGGGCCA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.21, C:0.17, G:0.35, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:9458336 original size:27 final size:27
Alignment explanation
Indices: 9458306--9458619 Score: 219
Period size: 27 Copynumber: 11.7 Consensus size: 27
9458296 TAATAAAGAG
* * *
9458306 AAATTACTAAAATACCCCCGATTTGTA
1 AAATTACTGAAACACCCTCGATTTGTA
*
9458333 AAATTA-TCGAAATACCCTCGATTTGTA
1 AAATTACT-GAAACACCCTCGATTTGTA
* *
9458360 AAATTA-TCGAAACACCCTC-AATTGTG
1 AAATTACT-GAAACACCCTCGATTTGTA
* * * *
9458386 AAATTACTAAAATACCCTCAATTTTTA
1 AAATTACTGAAACACCCTCGATTTGTA
* *
9458413 AAATTATCT-AAACACCCTCAATTTGTG
1 AAATTA-CTGAAACACCCTCGATTTGTA
* ** *
9458440 AAATTA-TCGAAACACTCTTAATTTGAA
1 AAATTACT-GAAACACCCTCGATTTGTA
*
9458467 AAATTA-TCGAAACACCTTCGATTTGTA
1 AAATTACT-GAAACACCCTCGATTTGTA
* *
9458494 AAATTACCGAAACACCATCGATTTGTA
1 AAATTACTGAAACACCCTCGATTTGTA
* * * * *
9458521 AAATTATTAAAATACCCT-TATTTTATA
1 AAATTACTGAAACACCCTCGA-TTTGTA
** * **
9458548 AAATTACCAAAATAGACTCGATTTGTA
1 AAATTACTGAAACACCCTCGATTTGTA
** *
9458575 AAATTACCAAAACACCCCCGATTTGTA
1 AAATTACTGAAACACCCTCGATTTGTA
* *
9458602 AAATTATTGAAATACCCT
1 AAATTACTGAAACACCCT
9458620 TATAGTATAA
Statistics
Matches: 232, Mismatches: 46, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
25 1 0.00
26 22 0.09
27 206 0.89
28 3 0.01
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAACACCCTCGATTTGTA
Found at i:9458463 original size:54 final size:54
Alignment explanation
Indices: 9458326--9458619 Score: 259
Period size: 54 Copynumber: 5.5 Consensus size: 54
9458316 AATACCCCCG
* *
9458326 ATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCA
1 ATTTGTAAAATTATCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCA
* * * * *
9458380 A-TTGTGAAATTA-CTAAAATACCCTCAATTTTTAAAATTATCTAAACACCCTCA
1 ATTTGTAAAATTATC-GAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCA
* * * * * *
9458433 ATTTGTGAAATTATCGAAACACTCTTAATTTGAAAAATTATCGAAACACCTTCG
1 ATTTGTAAAATTATCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCA
* * * ** * *
9458487 ATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTATTAAAATACCCTTA
1 ATTTGTAAAATTATCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCA
* * * * * ** * * * * *
9458541 TTTTATAAAATTACCAAAATAGACTCGATTTGTAAAATTACCAAAACACCCCCG
1 ATTTGTAAAATTATCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCA
* *
9458595 ATTTGTAAAATTATTGAAATACCCT
1 ATTTGTAAAATTATCGAAACACCCT
9458620 TATAGTATAA
Statistics
Matches: 190, Mismatches: 47, Indels: 6
0.78 0.19 0.02
Matches are distributed among these distances:
52 1 0.01
53 46 0.24
54 142 0.75
55 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.33
Consensus pattern (54 bp):
ATTTGTAAAATTATCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCA
Found at i:9458622 original size:81 final size:81
Alignment explanation
Indices: 9458306--9458646 Score: 346
Period size: 81 Copynumber: 4.2 Consensus size: 81
9458296 TAATAAAGAG
* * * *
9458306 AAATTACTAAAATACCCCCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTATCGAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAA
* * *
9458371 ACACCCTCA-ATTGTG
66 ACACCCTTATATTATA
* * * * * * *
9458386 AAATTACTAAAATACCCTCAATTTTTAAAATTATCTAAACACCCTCAATTTGTGAAATTATCGAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAA
*
9458451 ACACTCTTA-ATT-TGAA
66 ACACCCTTATATTAT--A
* * * * * **
9458467 AAATTATCGAAACACCTTCGATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTATTAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAA
* *
9458532 ATACCCTTATTTTATA
66 ACACCCTTATATTATA
** * * *
9458548 AAATTACCAAAATAGACTCGATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATTGAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAA
* *
9458613 ATACCCTTATAGTATA
66 ACACCCTTATATTATA
* *
9458629 AAATGACCAACATACCCT
1 AAATTACCAAAATACCCT
9458647 TATAGTGTAA
Statistics
Matches: 214, Mismatches: 43, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.00
80 68 0.32
81 142 0.66
82 2 0.01
83 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAA
ACACCCTTATATTATA
Found at i:9458959 original size:32 final size:32
Alignment explanation
Indices: 9458923--9458988 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
9458913 TTGACGACCG
9458923 TGGATCCATCGATGGCTATTAAGCCTAATATT
1 TGGATCCATCGATGGCTATTAAGCCTAATATT
*
9458955 TGGATCCATCGATGGCTATTGAGCCTAATATT
1 TGGATCCATCGATGGCTATTAAGCCTAATATT
9458987 TG
1 TG
9458989 ATTAGCAGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (32 bp):
TGGATCCATCGATGGCTATTAAGCCTAATATT
Found at i:9459167 original size:11 final size:11
Alignment explanation
Indices: 9459151--9459176 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
9459141 ATTGCATGTA
9459151 TGATATTATTG
1 TGATATTATTG
9459162 TGATATTATTG
1 TGATATTATTG
9459173 TGAT
1 TGAT
9459177 GTGGGCTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:9463768 original size:22 final size:22
Alignment explanation
Indices: 9463743--9463788 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
9463733 GACAGGGACT
9463743 TTTGCTCCTCTAAATAAGTGCA
1 TTTGCTCCTCTAAATAAGTGCA
*
9463765 TTTGCTCCTCTGAATAAGTGCA
1 TTTGCTCCTCTAAATAAGTGCA
9463787 TT
1 TT
9463789 AACTTGAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (22 bp):
TTTGCTCCTCTAAATAAGTGCA
Found at i:9474376 original size:23 final size:23
Alignment explanation
Indices: 9474327--9474404 Score: 102
Period size: 24 Copynumber: 3.3 Consensus size: 23
9474317 GCTTTATCAT
**
9474327 ATAACTAGAGGCCTAGCCTCTTTTA
1 ATAACTAG-GGCAAAGCC-CTTTTA
9474352 ATAACTAGGGCAAAGCCCTTTTA
1 ATAACTAGGGCAAAGCCCTTTTA
*
9474375 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTAGGGCA-AAGCCCTTTTA
9474399 ATAACT
1 ATAACT
9474405 GGGGACCCAA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
23 17 0.35
24 24 0.49
25 8 0.16
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (23 bp):
ATAACTAGGGCAAAGCCCTTTTA
Found at i:9474391 original size:24 final size:23
Alignment explanation
Indices: 9474341--9474408 Score: 109
Period size: 24 Copynumber: 2.9 Consensus size: 23
9474331 CTAGAGGCCT
*
9474341 AGCCTCTTTTAATAACTAGGGCAA
1 AGCC-CTTTTAATAACTGGGGCAA
9474365 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCA-A
9474389 AGCCCTTTTAATAACTGGGG
1 AGCCCTTTTAATAACTGGGG
9474409 ACCCAACCCA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
23 17 0.40
24 25 0.60
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
AGCCCTTTTAATAACTGGGGCAA
Found at i:9474460 original size:20 final size:20
Alignment explanation
Indices: 9474435--9474501 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
9474425 TTATGAATAC
9474435 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
9474455 ATCATGTGCATACCATACAT
1 ATCATGTGCATATCATACAT
*
9474475 ATCATGTACATATCATATCA-
1 ATCATGTGCATATCATA-CAT
9474495 ATCATGT
1 ATCATGT
9474502 ATATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:9474466 original size:11 final size:11
Alignment explanation
Indices: 9474435--9474502 Score: 58
Period size: 11 Copynumber: 6.7 Consensus size: 11
9474425 TTATGAATAC
*
9474435 ATCATGTGCAT
1 ATCATGTACAT
9474446 ATCA--TACAT
1 ATCATGTACAT
*
9474455 ATCATGTGCAT
1 ATCATGTACAT
*
9474466 ACCA--TACAT
1 ATCATGTACAT
9474475 ATCATGTACAT
1 ATCATGTACAT
*
9474486 ATCATAT-CA-
1 ATCATGTACAT
9474495 ATCATGTA
1 ATCATGTA
9474503 TATCAAAATC
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
9 21 0.47
10 2 0.04
11 22 0.49
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.34
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:9474507 original size:9 final size:10
Alignment explanation
Indices: 9474435--9474507 Score: 55
Period size: 9 Copynumber: 7.4 Consensus size: 10
9474425 TTATGAATAC
9474435 ATCATGTGCAT
1 ATCATGT-CAT
*
9474446 ATCAT-ACAT
1 ATCATGTCAT
9474455 ATCATGTGCAT
1 ATCATGT-CAT
* *
9474466 ACCAT-ACAT
1 ATCATGTCAT
9474475 ATCATGTACAT
1 ATCATGT-CAT
*
9474486 ATCATATCA-
1 ATCATGTCAT
9474495 ATCATGT-AT
1 ATCATGTCAT
9474504 ATCA
1 ATCA
9474508 AAATCCCATG
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
8 1 0.02
9 25 0.51
10 2 0.04
11 21 0.43
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (10 bp):
ATCATGTCAT
Found at i:9476318 original size:24 final size:25
Alignment explanation
Indices: 9476244--9476329 Score: 122
Period size: 26 Copynumber: 3.4 Consensus size: 25
9476234 GGATGTTACA
9476244 AAAGCCCTTTT-TGATAAACTGGGGC
1 AAAGCCCTTTTCTG-TAAACTGGGGC
*
9476269 AAAAGCCCTTTTCGGTAAACTGGGGC
1 -AAAGCCCTTTTCTGTAAACTGGGGC
9476295 AAAGCCCTTTTCTGT-AACTGGGGC
1 AAAGCCCTTTTCTGTAAACTGGGGC
*
9476319 ATAGCCCTTTT
1 AAAGCCCTTTT
9476330 GCACTTCCTC
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
24 19 0.34
25 14 0.25
26 22 0.39
27 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.29
Consensus pattern (25 bp):
AAAGCCCTTTTCTGTAAACTGGGGC
Done.