Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 271 of 343
Found at i:89954578 original size:48 final size:48
Alignment explanation
Indices: 89954507--89954691 Score: 214
Period size: 48 Copynumber: 3.9 Consensus size: 48
89954497 TACTTAGGAG
* *
89954507 TCTCGCACACT-AAGTGCCAATATCATGGCTCGAAGCCAATTCAATAAA
1 TCTCGCAC-CTGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAA
* * *
89954555 TCTCGCACCTGAAGTGCTAATATCATGGCCCGTAGCCAAATCAATGAA
1 TCTCGCACCTGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAA
*
89954603 GCTCGCACCTGAAGTGCCAATATCATGGCCCGAAGCCAAATCAA-AGTAA
1 TCTCGCACCTGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATA--AA
* ** * * *
89954652 -CTCACACCCAAAGTTCTAATATCATGGCCCGTAGCCAAAT
1 TCTCGCACCTGAAGTGCCAATATCATGGCCCGAAGCCAAAT
89954692 AAATGTATTC
Statistics
Matches: 119, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
47 2 0.02
48 115 0.97
49 2 0.02
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.21
Consensus pattern (48 bp):
TCTCGCACCTGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAA
Found at i:89954637 original size:96 final size:95
Alignment explanation
Indices: 89954508--89954696 Score: 265
Period size: 96 Copynumber: 2.0 Consensus size: 95
89954498 ACTTAGGAGT
* * * **
89954508 CTCGCACACTAAGTGCCAATATCATGGCTCGAAGCCAATTCAATA-AATCTCGCACCTGAAGTGC
1 CTCGCACACTAAGTGCCAATATCATGGCCCGAAGCCAAATCAA-AGAA-CTCACACCCAAAGTGC
*
89954572 TAATATCATGGCCCGTAGCCAAATCAATGAAG
64 TAATATCATGGCCCGTAGCCAAATAAATGAAG
*
89954604 CTCGCAC-CTGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAACTCACACCCAAAGTTC
1 CTCGCACACT-AAGTGCCAATATCATGGCCCGAAGCCAAATCAAAG-AACTCACACCCAAAGTGC
89954668 TAATATCATGGCCCGTAGCCAAATAAATG
64 TAATATCATGGCCCGTAGCCAAATAAATG
89954697 TATTCCCTAA
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
95 3 0.04
96 78 0.94
97 2 0.02
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (95 bp):
CTCGCACACTAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGAACTCACACCCAAAGTGCTA
ATATCATGGCCCGTAGCCAAATAAATGAAG
Found at i:89955275 original size:21 final size:20
Alignment explanation
Indices: 89955251--89955289 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
89955241 AAACTTGTAT
89955251 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
*
89955272 ATCTATCAAGAAACTTCA
1 ATCTATCAACAAACTTCA
89955290 AAATACATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.28
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:89964966 original size:21 final size:21
Alignment explanation
Indices: 89964942--89964986 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
89964932 ATCCGTGTGG
*
89964942 AGGCCGTGTGATCAACAAGTC
1 AGGCCGTGTGATCAACAAGCC
89964963 AGGCCGTGTGATCAACAAGCC
1 AGGCCGTGTGATCAACAAGCC
89964984 AGG
1 AGG
89964987 TCGTATGCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.31, T:0.16
Consensus pattern (21 bp):
AGGCCGTGTGATCAACAAGCC
Found at i:89965536 original size:40 final size:40
Alignment explanation
Indices: 89965471--89965549 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
89965461 ATATGATACC
*
89965471 ACTTGGTGTGTAGGGTTGGAGGGGTTGATTTCATCCCCAT
1 ACTTGGTGTGTAGGGCTGGAGGGGTTGATTTCATCCCCAT
*
89965511 ACTTGGTGTGTAGGGCTGG-GTGGGTTGATTTTATCCCCA
1 ACTTGGTGTGTAGGGCTGGAG-GGGTTGATTTCATCCCCA
89965550 CATGGTGTGC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 1 0.03
40 35 0.97
ACGTcount: A:0.14, C:0.15, G:0.35, T:0.35
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTGGAGGGGTTGATTTCATCCCCAT
Found at i:89972734 original size:40 final size:40
Alignment explanation
Indices: 89972670--89972747 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
89972660 TACGGTACCA
*
89972670 CTTGGTGTGTAGGGTTGGAAGGGTTGATTTCATCCCCATT
1 CTTGGTGTGTAGGGCTGGAAGGGTTGATTTCATCCCCATT
** *
89972710 CTTGGTGTGTAGGGCTGGGTGGGTTGATTTTATCCCCA
1 CTTGGTGTGTAGGGCTGGAAGGGTTGATTTCATCCCCA
89972748 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.13, C:0.15, G:0.35, T:0.37
Consensus pattern (40 bp):
CTTGGTGTGTAGGGCTGGAAGGGTTGATTTCATCCCCATT
Found at i:89974420 original size:14 final size:15
Alignment explanation
Indices: 89974403--89974431 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
89974393 GAGTATGGTA
89974403 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
89974417 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
89974432 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:89979731 original size:290 final size:295
Alignment explanation
Indices: 89979071--89979731 Score: 677
Period size: 291 Copynumber: 2.3 Consensus size: 295
89979061 CAATTATACC
* * * * * * * * *
89979071 TATACTATATATTAATTGTTTTATTGAGTAGGTGTCACCCTCAATCGAGTCACCAATTCATTTAG
1 TATACTATTTATGAAGTGTTTTATTGAGTTGATGTCACCCTCAATCAAGTCACTAACTCAGTTAG
* * * * ** *
89979136 AAAAATTATGGAAACACATTTTTATAATTAAAGTAAGTTATACTATTTGAGGTTATTTTAGTATT
66 GAAAATTATGGAAACACATTTTCATAATTAAAGTAAATTATACTAATCAAGGATATTTTAGTATT
* * * ** * *
89979201 TTTATTTTAACACAAACCAATAAAAATATACATTTGTTGAGATTTGACACCGCAATGATTGGATT
131 TTTATTTTAACACAAA-CAATAAAAATATACATTTGTAGAGATTTGAAACCACAACAATTGAAGT
* * * ** * ** *
89979266 AGTAAATTCTTAAATTTACCACTCAACCAGATCTTCATTCTAATTAATTTTGTAATTTTTATTTT
195 AATAAATACTTAAATTTACCACTCAACCAAAGATTCATTCTAATAAATTTTACAATTTTTATTTG
* *
89979331 AATATGCACAATTTATTATTCCATCAATTGTATATA
260 AATATGCACAATTTATTATTCAATCAACTGTATATA
* * * * * **
89979367 TGTACTATTTATTAAGTGTTTTACTGAGTT-AGTATCACCCTCAACCTGGTCA-TCAACTCGAGT
1 TATACTATTTATGAAGTGTTTTATTGAGTTGA-TGTCACCCTCAATCAAGTCACT-AACTC-AGT
* *
89979430 TAGGAAAATTATGG-AA-ATATTTTCATAATTAAATTAAATTATACTAATCAAGGATATTTTAGT
63 TAGGAAAATTATGGAAACACATTTTCATAATTAAAGTAAATTATACTAATCAAGGATATTTTAGT
*
89979493 -TTTTTCA-TTTAA-A-AAA-AATAAAAATATACATTTGGTAG-GATTTGAAACCAACACCAATT
128 ATTTTT-ATTTTAACACAAACAATAAAAATATACATTT-GTAGAGATTTGAAACC-ACAACAATT
* *
89979552 GAAGTAATAAA-ACATTTAATTTACCACTCAACCAAAGATTCATTTTAATAAATTTTACATATTT
190 GAAGTAATAAATAC-TTAAATTTACCACTCAACCAAAGATTCATTCTAATAAATTTTACA-ATTT
*
89979616 TTATTTGAATATGCACAATTTATTATCTCAAAT-AGCTGTATA-A
253 TTATTTGAATATGCACAATTTATTAT-TC-AATCAACTGTATATA
89979659 CTATACTA-TT-TGAAGTGTTTTATTGAGTTGATGTCACCCTCAATCAAGTCACTAACTCAGTTA
1 -TATACTATTTATGAAGTGTTTTATTGAGTTGATGTCACCCTCAATCAAGTCACTAACTCAGTTA
*
89979722 GGCAAATTAT
65 GGAAAATTAT
89979732 AAAAATGACC
Statistics
Matches: 300, Mismatches: 52, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
290 42 0.14
291 91 0.30
292 37 0.12
293 16 0.05
294 12 0.04
295 40 0.13
296 47 0.16
297 15 0.05
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (295 bp):
TATACTATTTATGAAGTGTTTTATTGAGTTGATGTCACCCTCAATCAAGTCACTAACTCAGTTAG
GAAAATTATGGAAACACATTTTCATAATTAAAGTAAATTATACTAATCAAGGATATTTTAGTATT
TTTATTTTAACACAAACAATAAAAATATACATTTGTAGAGATTTGAAACCACAACAATTGAAGTA
ATAAATACTTAAATTTACCACTCAACCAAAGATTCATTCTAATAAATTTTACAATTTTTATTTGA
ATATGCACAATTTATTATTCAATCAACTGTATATA
Found at i:89979797 original size:292 final size:292
Alignment explanation
Indices: 89979278--89979810 Score: 634
Period size: 291 Copynumber: 1.8 Consensus size: 292
89979268 TAAATTCTTA
* ** * ** *
89979278 AATTTACCACTCAACCAGATCTTCATTCTAATTAATTTTGTAATTTTTATTTTAATATGCACAAT
1 AATTTACCACTCAACCAAAGATTCATTCTAATAAATTTTACAATTTTTATTTGAATATGCACAAT
* * * *
89979343 TTATTATTCCATCAATTGTATATATGTACTATTTATTAAGTGTTTTACTGAGTTAGTATCACCCT
66 TTATTATTCAATCAACTGTATATATATACTATTTATGAAGTGTTTTACTGAGTTAGTATCACCCT
** ** * *
89979408 CAACCTGGTCATCAACTCGAGTTAGGAAAATTATGGAAATATTTTCATAATTAAATTAAATTATA
131 CAACCAAGTCATCAACTCGAGTTAGGAAAATTATAAAAATACTTCCATAATTAAATTAAATTATA
* *
89979473 CTAATCAAGGATATTTTAGTTTTTTCATTTAAAAA-AAATAAAAATATACATTTGGTAGGATTTG
196 CTAATCAAGGATAATTTAGTCTTTTCATTTAAAAACAAATAAAAATATACATTTGGTAGGATTTG
89979537 AAACCAACACCAATTGAAGTAATAAAACATTT
261 AAACCAACACCAATTGAAGTAATAAAACATTT
*
89979569 AATTTACCACTCAACCAAAGATTCATTTTAATAAATTTTACATATTTTTATTTGAATATGCACAA
1 AATTTACCACTCAACCAAAGATTCATTCTAATAAATTTTACA-ATTTTTATTTGAATATGCACAA
* * *
89979634 TTTATTATCTCAAAT-AGCTGTATA-ACTATACTA-TT-TGAAGTGTTTTATTGAGTT-GATGTC
65 TTTATTAT-TC-AATCAACTGTATATA-TATACTATTTATGAAGTGTTTTACTGAGTTAG-TATC
* * *
89979694 ACCCTCAATCAAGTCA-CTAACTC-AGTTAGGCAAATTATAAAAATGACCTTCCGTAATTAAAAT
126 ACCCTCAACCAAGTCATC-AACTCGAGTTAGGAAAATTATAAAAAT-A-CTTCCATAATT-AAAT
* * * * * *
89979757 TAATTTATATTATTCTAGGGTAATTTAGTCTTTT-ATTTAAAAACCAATAAAAAT
187 TAAATTATACTAATCAAGGATAATTTAGTCTTTTCATTTAAAAACAAATAAAAAT
89979811 GTATACGATG
Statistics
Matches: 200, Mismatches: 32, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
290 20 0.10
291 74 0.37
292 49 0.25
293 55 0.28
294 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (292 bp):
AATTTACCACTCAACCAAAGATTCATTCTAATAAATTTTACAATTTTTATTTGAATATGCACAAT
TTATTATTCAATCAACTGTATATATATACTATTTATGAAGTGTTTTACTGAGTTAGTATCACCCT
CAACCAAGTCATCAACTCGAGTTAGGAAAATTATAAAAATACTTCCATAATTAAATTAAATTATA
CTAATCAAGGATAATTTAGTCTTTTCATTTAAAAACAAATAAAAATATACATTTGGTAGGATTTG
AAACCAACACCAATTGAAGTAATAAAACATTT
Found at i:89981094 original size:22 final size:22
Alignment explanation
Indices: 89981066--89981120 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
89981056 AACTTAATTC
89981066 ATTGAATGTAATACATTTACTA
1 ATTGAATGTAATACATTTACTA
89981088 ATTGAATGTAATACATTTACTA
1 ATTGAATGTAATACATTTACTA
89981110 ATTGAATGTAA
1 ATTGAATGTAA
89981121 AGGAGCTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (22 bp):
ATTGAATGTAATACATTTACTA
Found at i:89994614 original size:16 final size:17
Alignment explanation
Indices: 89994588--89994620 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
89994578 TTTAATTAGA
*
89994588 TAAATTAATTTTTCAAT
1 TAAATTAATTTTCCAAT
89994605 TAAA-TAATTTTCCAAT
1 TAAATTAATTTTCCAAT
89994621 CTAATTCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATTAATTTTCCAAT
Found at i:89998096 original size:22 final size:22
Alignment explanation
Indices: 89998054--89998099 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 22
89998044 TTAAAAAGAG
89998054 TTATAATTTGATTATTAAATTAT
1 TTATAATTT-ATTATTAAATTAT
89998077 TTATAATTT-TTATTTAAATTAT
1 TTATAATTTATTA-TTAAATTAT
89998099 T
1 T
89998100 AAAATATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 3 0.14
22 10 0.45
23 9 0.41
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTATAATTTATTATTAAATTAT
Found at i:89998119 original size:31 final size:28
Alignment explanation
Indices: 89998064--89998153 Score: 108
Period size: 31 Copynumber: 3.0 Consensus size: 28
89998054 TTATAATTTG
89998064 ATTATTAAATTATTTATAATTTTTATTTAA
1 ATTATTAAATTA-TTA-AATTTTTATTTAA
*
89998094 ATTATTAAAATATTCAACAATTTTTATTTAA
1 ATTATTAAATTATT--A-AATTTTTATTTAA
* *
89998125 ATCATTAAGTTATTAAATTTTTATTTAA
1 ATTATTAAATTATTAAATTTTTATTTAA
89998153 A
1 A
89998154 AATAAAAAGG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
28 14 0.26
29 3 0.06
30 11 0.21
31 25 0.47
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.53
Consensus pattern (28 bp):
ATTATTAAATTATTAAATTTTTATTTAA
Found at i:90004190 original size:60 final size:57
Alignment explanation
Indices: 90004064--90004183 Score: 177
Period size: 60 Copynumber: 2.1 Consensus size: 57
90004054 TTAATATTTC
* * *
90004064 TATGGAGATTACTTTATCTAATGCTAAGATTACACCACAAGAAAGAACATGCCATGT
1 TATGGAGATTAATTTATCTAATGCTAAGATTACACCAAAAGAAAGAACATACCATGT
*
90004121 TATGGAGATTAATATTATCTATTATGCTAAGATTACACCAAAAGAAAGAGCATACCATGT
1 TATGGAGATTAAT-TTATCTA--ATGCTAAGATTACACCAAAAGAAAGAACATACCATGT
90004181 TAT
1 TAT
90004184 TTAGATTTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
57 12 0.21
58 7 0.12
60 37 0.66
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (57 bp):
TATGGAGATTAATTTATCTAATGCTAAGATTACACCAAAAGAAAGAACATACCATGT
Found at i:90005571 original size:27 final size:26
Alignment explanation
Indices: 90005538--90005605 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 26
90005528 GTGAAAATCT
90005538 AATTA-AAAAATTTAAAATAAT-ATAA
1 AATTATAAAAATTTAAAATAATGA-AA
* *
90005563 AATTCTAAAAATATGAAAATAATGAAA
1 AATTATAAAAAT-TTAAAATAATGAAA
90005590 AATTATTAAAAATTTA
1 AATTA-TAAAAATTTA
90005606 GAAAATTCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
25 4 0.11
26 6 0.17
27 17 0.49
28 8 0.23
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (26 bp):
AATTATAAAAATTTAAAATAATGAAA
Found at i:90005652 original size:17 final size:18
Alignment explanation
Indices: 90005619--90005656 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
90005609 AATTCAAAAG
*
90005619 ATATTTTTGTAATTTTAA
1 ATATTTTTGGAATTTTAA
90005637 ATATTTTTGGAA-TTTAA
1 ATATTTTTGGAATTTTAA
90005654 ATA
1 ATA
90005657 ATTATTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (18 bp):
ATATTTTTGGAATTTTAA
Found at i:90006575 original size:23 final size:23
Alignment explanation
Indices: 90006548--90006597 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
90006538 GGATCAAAAT
*
90006548 TAAAATT-TTAAAAGTACAAGAAC
1 TAAAATTGATAAAA-TACAAGAAC
*
90006571 TAAAATTGATAAAATACAAGTAC
1 TAAAATTGATAAAATACAAGAAC
90006594 TAAA
1 TAAA
90006598 TCCATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.26
Consensus pattern (23 bp):
TAAAATTGATAAAATACAAGAAC
Found at i:90007962 original size:34 final size:34
Alignment explanation
Indices: 90007924--90007992 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
90007914 TAAAATCATC
*
90007924 AATTAAGTGAAATAGTGAATCACCATGTATTTTT
1 AATTAAGTGAAATAGTGAACCACCATGTATTTTT
*
90007958 AATTAGGTGAAATAGTGAACCACCATGTATTTTT
1 AATTAAGTGAAATAGTGAACCACCATGTATTTTT
90007992 A
1 A
90007993 GTTTCTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (34 bp):
AATTAAGTGAAATAGTGAACCACCATGTATTTTT
Found at i:90014748 original size:46 final size:46
Alignment explanation
Indices: 90014681--90014948 Score: 217
Period size: 46 Copynumber: 5.8 Consensus size: 46
90014671 TGTAACCTGC
*
90014681 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
90014727 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
90014777 -C-TCA-CGAACTCAGACCCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * **
90014820 CCATAAGTGAGCTCAGACTCAACTCAACGAGCTCGGATGCCTAGTAACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--GCGT--TCGCAT
* * * * * * * *
90014870 -C-TCA-CGAACTCGGACTTAACTCAACGAGTTCAGACGTCCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
90014913 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
90014949 ATGCCCAAAT
Statistics
Matches: 173, Mismatches: 33, Indels: 32
0.73 0.14 0.13
Matches are distributed among these distances:
42 3 0.02
43 6 0.03
44 3 0.02
45 6 0.03
46 86 0.50
47 49 0.28
48 7 0.04
49 3 0.02
50 7 0.04
51 3 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:90014803 original size:47 final size:47
Alignment explanation
Indices: 90014735--90014897 Score: 174
Period size: 47 Copynumber: 3.5 Consensus size: 47
90014725 ATCCATAAGT
90014735 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * * *
90014782 GAACTCAGACCCAACTCAACGAGTTCGGA---C--GTTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
* *
90014828 GAGCTCAGACTCAACTCAACGAGCTCGGATGCCTAGTAACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* *
90014875 GAACTCGGACTTAACTCAACGAG
1 GAACTCAGACTCAACTCAACGAG
90014898 TTCAGACGTC
Statistics
Matches: 92, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 26 0.28
47 47 0.51
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.20
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:90014815 original size:93 final size:93
Alignment explanation
Indices: 90014689--90014953 Score: 431
Period size: 93 Copynumber: 2.8 Consensus size: 93
90014679 GCCCATAAGT
* *
90014689 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
90014754 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTAACATCTCAC
* * *
90014782 GAACTCAGACCCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAGCTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
90014847 CGAGCTCGGATGCCTAGTAACATCTCAC
66 CGAGCTCGGATGCCTAGTAACATCTCAC
* * * *
90014875 GAACTCGGACTTAACTCAACGAGTTCAGACGTCCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
90014940 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
90014954 CAAATATCCG
Statistics
Matches: 158, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 158 1.00
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTAACATCTCAC
Found at i:90018284 original size:30 final size:30
Alignment explanation
Indices: 90018250--90018310 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
90018240 TGGTAAAATG
90018250 TAAATTTATAATAACAAACTTAATTTGTTT
1 TAAATTTATAATAACAAACTTAATTTGTTT
90018280 TAAATTTATAATAACAAACTTAATTTGTTT
1 TAAATTTATAATAACAAACTTAATTTGTTT
90018310 T
1 T
90018311 TTTAAATGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.48
Consensus pattern (30 bp):
TAAATTTATAATAACAAACTTAATTTGTTT
Found at i:90019115 original size:39 final size:39
Alignment explanation
Indices: 90019068--90019207 Score: 217
Period size: 39 Copynumber: 3.6 Consensus size: 39
90019058 ATCGTGATCT
** * *
90019068 GAAGCCCGAAATCTAGCTGAAGCACATAAGTGCTAAACT
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
90019107 GCAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
90019146 GAAGCCCGGAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
90019185 GAAGCCCGGAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
90019208 TCATCAGAGC
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 94 1.00
ACGTcount: A:0.36, C:0.24, G:0.26, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:90022599 original size:31 final size:31
Alignment explanation
Indices: 90022564--90022681 Score: 191
Period size: 31 Copynumber: 3.8 Consensus size: 31
90022554 CTTGTCACTT
*
90022564 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
90022595 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
90022626 GTAGCCGGAGCTACCACTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
90022657 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
90022682 TGTCATTTGT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 81 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:90022763 original size:50 final size:51
Alignment explanation
Indices: 90022657--90022785 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
90022647 CATTGATCAG
* * *
90022657 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
90022708 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
90022758 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
90022786 TTCCATGGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:90024087 original size:39 final size:39
Alignment explanation
Indices: 90024042--90024142 Score: 130
Period size: 39 Copynumber: 2.6 Consensus size: 39
90024032 ATCGTGATCT
* *
90024042 GAAGCCCGAAATCTAGCTAAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAAGCTAACTAAAGCACATAAGTGCTAAACG
* * *
90024081 GCAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAAGCTAACTAAAGCACATAAGTGCTAAACG
* * *
90024120 GAAGCCCGGAGGCTAACTGAAGC
1 GAAGCCCGAAAGCTAACTAAAGC
90024143 TCATCAGAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.37, C:0.25, G:0.26, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAAGCTAACTAAAGCACATAAGTGCTAAACG
Found at i:90024124 original size:21 final size:21
Alignment explanation
Indices: 90024061--90024124 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 21
90024051 AATCTAGCTA
90024061 AAGCACATAAGTGCTAAACGG
1 AAGCACATAAGTGCTAAACGG
* ** *
90024082 CAGC-CCGAAG-GCT-AACTG
1 AAGCACATAAGTGCTAAACGG
90024100 AAGCACATAAGTGCTAAACGG
1 AAGCACATAAGTGCTAAACGG
90024121 AAGC
1 AAGC
90024125 CCGGAGGCTA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 7 0.22
19 7 0.22
20 7 0.22
21 11 0.34
ACGTcount: A:0.39, C:0.23, G:0.25, T:0.12
Consensus pattern (21 bp):
AAGCACATAAGTGCTAAACGG
Found at i:90029000 original size:29 final size:29
Alignment explanation
Indices: 90028955--90029011 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
90028945 TGGCTTTTGG
*
90028955 CCCTTGGTGTGAGCCATGCAACTATAAAA
1 CCCTTGGTGTGAACCATGCAACTATAAAA
90028984 CCCTTGGTGTGAACCATGCAACTATAAA
1 CCCTTGGTGTGAACCATGCAACTATAAA
90029012 CCTGGAAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (29 bp):
CCCTTGGTGTGAACCATGCAACTATAAAA
Found at i:90031507 original size:26 final size:28
Alignment explanation
Indices: 90031486--90031540 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 28
90031476 TGATTATTTT
*
90031486 TATATTATA-AAAAT-TAAAATTAATTA
1 TATATTAAATAAAATATAAAATTAATTA
90031512 TATATTAAATAAAATATAAAATATAATTA
1 TATATTAAATAAAATATAAAAT-TAATTA
90031541 AATTTCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 8 0.32
27 5 0.20
28 6 0.24
29 6 0.24
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (28 bp):
TATATTAAATAAAATATAAAATTAATTA
Found at i:90031550 original size:29 final size:27
Alignment explanation
Indices: 90031487--90031552 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 27
90031477 GATTATTTTT
* *
90031487 ATATTATA-AAAATTAAAATTAATTAT
1 ATATTAAATAAAATTAAAATTAATTAA
90031513 ATATTAAATAAAATATAAAATATAATTAA
1 ATATTAAATAAAAT-TAAAAT-TAATTAA
90031542 AT-TTCAAATAA
1 ATATT-AAATAA
90031553 TCGCAACTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 7 0.21
27 5 0.15
28 8 0.24
29 14 0.41
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (27 bp):
ATATTAAATAAAATTAAAATTAATTAA
Found at i:90032317 original size:4 final size:4
Alignment explanation
Indices: 90032310--90032335 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
90032300 TATATAAAAA
90032310 TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TA
90032336 GTTGTTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:90033807 original size:59 final size:60
Alignment explanation
Indices: 90033712--90033835 Score: 155
Period size: 59 Copynumber: 2.1 Consensus size: 60
90033702 AGTCAGTCTT
* * * *
90033712 CTATTAGTAAATTTCTTTCTTGATCATCCTATTATG-AAAGTTACAAAAT-GATCACCCAA
1 CTATTAGTAAATTTCTTTCTTGATCACCCAACTATGAAAAGTCACAAAATAG-TCACCCAA
* *
90033771 CTATTAGTAAATTTC-TTCTTTGATCACCCAACTATGAAAAGTCATAAAATAGTCATCCAA
1 CTATTAGTAAATTTCTTTC-TTGATCACCCAACTATGAAAAGTCACAAAATAGTCACCCAA
90033831 CTATT
1 CTATT
90033836 CAATTTTACC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
58 3 0.05
59 29 0.52
60 23 0.41
61 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (60 bp):
CTATTAGTAAATTTCTTTCTTGATCACCCAACTATGAAAAGTCACAAAATAGTCACCCAA
Found at i:90036907 original size:27 final size:24
Alignment explanation
Indices: 90036858--90036983 Score: 78
Period size: 26 Copynumber: 5.1 Consensus size: 24
90036848 AGAATGGGTC
*
90036858 TAAAATAAATTATATAAAATAATTT
1 TAAAATAAATAATATAAAATAA-TT
*
90036883 TAAAATAAATAATATACAATTTAATT
1 TAAAATAAATAATATA-AA-ATAATT
* *
90036909 TAAAAGT-AATAA-ATAAGA-AGTT
1 TAAAA-TAAATAATATAAAATAATT
* *
90036931 TAAAATATATAATACGTAAAAGAATT
1 TAAAATAAATAATA--TAAAATAATT
* * * *
90036957 AAAAATAGACAATATAAATATATTT
1 TAAAATAAATAATATAAA-ATAATT
90036982 TA
1 TA
90036984 TAATGTTAAT
Statistics
Matches: 78, Mismatches: 14, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
21 1 0.01
22 12 0.15
23 1 0.01
24 5 0.06
25 27 0.35
26 28 0.36
27 4 0.05
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (24 bp):
TAAAATAAATAATATAAAATAATT
Found at i:90044669 original size:20 final size:20
Alignment explanation
Indices: 90044644--90044684 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
90044634 GAGGTTAAAA
*
90044644 TTTCTTTTGGGGGGTAAAGT
1 TTTCTTTTAGGGGGTAAAGT
90044664 TTTCTTTTAGGGGGTAAAGT
1 TTTCTTTTAGGGGGTAAAGT
90044684 T
1 T
90044685 GTAACGTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.05, G:0.32, T:0.46
Consensus pattern (20 bp):
TTTCTTTTAGGGGGTAAAGT
Found at i:90055990 original size:40 final size:40
Alignment explanation
Indices: 90055935--90056122 Score: 279
Period size: 40 Copynumber: 4.7 Consensus size: 40
90055925 TAATTGAGGA
* *
90055935 TTATATCCGGGTTAAGTCCCGAAGGCTTTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
90055975 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
90056015 TTATATCTGGGCTAAGTCCTGAAGGCATTCGTGCTGGTTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * * *
90056055 TTATATCCGGGCCAAGTTCCGAAGGCACTCGTACTGG-TG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
90056094 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
90056123 TGTGTTTGGA
Statistics
Matches: 133, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 27 0.20
40 106 0.80
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.31
Consensus pattern (40 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:90063854 original size:40 final size:40
Alignment explanation
Indices: 90063799--90064026 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
90063789 TAATTGAGGA
*
90063799 TTATATCCGGGTTAAGTCCCAAAGGCTTTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTG
* *
90063839 TTATATCCGGTTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTG
**
90063879 TTATATCCGGGTTAAGTCCTGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTG
* * *
90063919 TTATATCTGGGCTAAGTCCTAAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTG
** * * * * *
90063959 TTATATCCGGGCCAAGTTCCGAAGGCACTCGTACT-GATG
1 TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTG
* *
90063998 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGTTAAGTCCCAAAGGCATT
90064027 TGTGTTTGGA
Statistics
Matches: 169, Mismatches: 19, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 29 0.17
40 140 0.83
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTG
Found at i:90071672 original size:16 final size:17
Alignment explanation
Indices: 90071651--90071683 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
90071641 TTATAATTCT
90071651 TTAATA-TTTATAGTAA
1 TTAATATTTTATAGTAA
90071667 TTAATATTTTATAGTAA
1 TTAATATTTTATAGTAA
90071684 ATTTTAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (17 bp):
TTAATATTTTATAGTAA
Found at i:90072070 original size:26 final size:25
Alignment explanation
Indices: 90072032--90072081 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
90072022 AATTAAAAAC
*
90072032 TAAAAATAACTAATTAGTTATAAAT
1 TAAAAATAACTAATTAGCTATAAAT
* *
90072057 TAAAAATCATCTAATTGGCTATAAA
1 TAAAAAT-AACTAATTAGCTATAAA
90072082 AAGAACTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.52, C:0.08, G:0.06, T:0.34
Consensus pattern (25 bp):
TAAAAATAACTAATTAGCTATAAAT
Found at i:90072149 original size:21 final size:22
Alignment explanation
Indices: 90072109--90072150 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
90072099 AAATTGGTTT
* *
90072109 ATTAAAATTGTAAAATATAACC
1 ATTAAAAATGTAAAACATAACC
90072131 ATTAAAAAT-TAAAACATAAC
1 ATTAAAAATGTAAAACATAAC
90072151 TAGTAAACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.29
Consensus pattern (22 bp):
ATTAAAAATGTAAAACATAACC
Found at i:90073169 original size:18 final size:17
Alignment explanation
Indices: 90073158--90073193 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
90073148 ATAAATATTA
90073158 GTTAAAAAATAAAAACT
1 GTTAAAAAATAAAAACT
*
90073175 GTTAAAAAAACAAAAACT
1 GTT-AAAAAATAAAAACT
90073193 G
1 G
90073194 ATGTGACACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 3 0.18
18 14 0.82
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.19
Consensus pattern (17 bp):
GTTAAAAAATAAAAACT
Found at i:90073251 original size:27 final size:27
Alignment explanation
Indices: 90073221--90073284 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
90073211 GGCATGCCAA
*
90073221 AGGCGGCACTAATGAAGCCTCTGGCAG
1 AGGCGGCACTAATGAAGCCTATGGCAG
* * * *
90073248 AGGCGGCACCAGTGAAGCCTATGTCAT
1 AGGCGGCACTAATGAAGCCTATGGCAG
90073275 AGGCGGCACT
1 AGGCGGCACT
90073285 TACACCCTCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.25, C:0.27, G:0.33, T:0.16
Consensus pattern (27 bp):
AGGCGGCACTAATGAAGCCTATGGCAG
Found at i:90074075 original size:18 final size:19
Alignment explanation
Indices: 90074052--90074087 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
90074042 GAGAATAGAA
90074052 GAGAAGAAAG-AAAGAAAG
1 GAGAAGAAAGAAAAGAAAG
90074070 GAGAAGAAAGAAAAGAAA
1 GAGAAGAAAGAAAAGAAA
90074088 AGGTAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (19 bp):
GAGAAGAAAGAAAAGAAAG
Found at i:90080786 original size:25 final size:25
Alignment explanation
Indices: 90080713--90080788 Score: 64
Period size: 30 Copynumber: 2.8 Consensus size: 25
90080703 GGCCCTTTGT
* *
90080713 TTTTATTATTTATTTTATTTTCGAA
1 TTTTATTTTTTATATTATTTTCGAA
*
90080738 TTTTATTTTTTAAAATATGCTA-TTTCTGTA
1 TTTTATTTTTT---ATAT--TATTTTC-GAA
90080768 TTTTATTTTTTATATTATTTT
1 TTTTATTTTTTATATTATTTT
90080789 AGTACATAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
25 12 0.29
26 3 0.07
27 4 0.10
28 3 0.07
29 4 0.10
30 15 0.37
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.68
Consensus pattern (25 bp):
TTTTATTTTTTATATTATTTTCGAA
Found at i:90080795 original size:155 final size:152
Alignment explanation
Indices: 90080417--90081254 Score: 1168
Period size: 155 Copynumber: 5.5 Consensus size: 152
90080407 TATATTTTGG
90080417 TATTTATTTTATTTTC-AGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATT
1 TATTTATTTTATTTTCGA-ATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATT
*
90080481 ATTTTAGTAC-TAATGTTTCAAATGTATTATTTTAGTTTTTTTTATATTAATTTAGTAAAAAACT
65 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACT
* *
90080545 CTAATTTTGGCCGTTTG---TT-T
130 CT-GTTTTGGCCCTTTGTTTTTAT
*
90080565 T-TTTATTTTATTTTCGAATTTTATTTTTTAAAATATACTATTTTTGTATTTTATTTTTAATATT
1 TATTTATTTTATTTTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTT-ATATT
*
90080629 ATTTTAATACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTTATATTAATTTAGTAAAAAAC
65 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTG-TTTTTTATATTAATTTAGTAAAAAAC
90080694 TCTAGTTTTGGCCCTTTGTTTTTAT
129 TCT-GTTTTGGCCCTTTGTTTTTAT
*
90080719 TATTTATTTTATTTTCGAATTTTATTTTTTAAAATATGCTA-TTTCTGTATTTTATTTTTTATAT
1 TATTTATTTTATTTTCGAATTTTATTTTTTAAAATATACTATTTTC-GTATTTTA-TTTTTATAT
90080783 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAAC
64 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAAC
90080848 TCTGATTTTGG----TTGTTTTTATTT
129 TCTG-TTTTGGCCCTTTGTTTTTA--T
* * *
90080871 TATTTTATTTTATTTT-TAGATTTTATTTATTAAATTATACTATTTTCGTATTTTATTTTTTTAT
1 TA-TTTATTTTATTTTCGA-ATTTTATTTTTTAAAATATACTATTTTCGTATTTTA--TTTTTAT
* *
90080935 AATATTTTAGTACATAATGTTTCAAATGTATTATTTTTCGTGTTTTTTATATTAATTTAGTAAAA
62 ATTATTTTAGTACATAATGTTTCAAATGTATTA-TTTTAGTGTTTTTTATATTAATTTAGT--AA
*
90081000 AAAACTCTGATTTTTGCCCTTTGTTTTTAT
124 AAAACTCTG-TTTTGGCCCTTTGTTTTTAT
* * * * *
90081030 TATTTATTCTATTTTTGGATTTTATTTTTTTAAAATATCCTAATTTCGTATTTTATTTTTATATT
1 TATTTATTTTATTTTCGAATTTTA-TTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATT
* *
90081095 ATTTTAGTATATAATGTTTCAAATATATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACT
65 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACT
*
90081160 CTGGTTTTGGCCCTTTGTTCTTA-
130 CT-GTTTTGGCCCTTTGTTTTTAT
* *
90081183 T-TTT-TTTTATTTTCGTATTTTATTTTTTAAAAATAAACTATTTTCGTATTTTATTTTTATATT
1 TATTTATTTTATTTTCGAATTTTATTTTTT-AAAATATACTATTTTCGTATTTTATTTTTATATT
*
90081246 ATTTAAGTA
65 ATTTTAGTA
90081255 AAAAAATCTG
Statistics
Matches: 626, Mismatches: 35, Indels: 55
0.87 0.05 0.08
Matches are distributed among these distances:
147 54 0.09
148 16 0.03
149 26 0.04
150 57 0.09
151 54 0.09
152 7 0.01
153 45 0.07
154 111 0.18
155 115 0.18
156 31 0.05
157 54 0.09
158 18 0.03
159 29 0.05
161 9 0.01
ACGTcount: A:0.27, C:0.06, G:0.07, T:0.59
Consensus pattern (152 bp):
TATTTATTTTATTTTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTA
TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACTC
TGTTTTGGCCCTTTGTTTTTAT
Found at i:90081101 original size:311 final size:307
Alignment explanation
Indices: 90080417--90081240 Score: 1227
Period size: 311 Copynumber: 2.7 Consensus size: 307
90080407 TATATTTTGG
* *
90080417 TATTTATTTTATTTTCAGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTA
1 TATTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTAATTTCGTATTTTATTTTTATATTA
*
90080482 TTTTAGTAC-TAATGTTTCAAATGTATTATTTTAGTTTTTTTTATATTAATTTAGTAAAAAACTC
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACTC
* *
90080546 TAATTTTGGCCG--TTTGTTT-TTTTATTTTATTTTCGAATTTTATTTTTTAAAATATACTATTT
131 TGATTTTGGCCGTTTTTTTTTATTTTATTTTATTTTCGAATTTTATTTTTTAAAATATACTATTT
* *
90080608 TTGTATTTTA-TTTTTAATATTATTTTAATACATAATGTTTCAAATGTATTATTTTAGTGTTTTT
196 TCGTATTTTATTTTTTAATAATATTTTAATACATAATGTTTCAAATGTATTATTTTAGTGTTTTT
90080672 TTATATTAATTTAGTAAAAAACTCTAGTTTTGGCCCTTTGTTTTTAT
261 TTATATTAATTTAGTAAAAAACTCTAGTTTTGGCCCTTTGTTTTTAT
* *
90080719 TATTTATTTTATTTTCGAATTTTATTTTTTAAAATATGCT-ATTTCTGTATTTTATTTTTTATAT
1 TATTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTAATTTC-GTATTTTA-TTTTTATAT
90080783 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAAC
64 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAAC
** * * *
90080848 TCTGATTTTGGTTGTTTTTATTTTATTTTATTTTATTTT-TAGATTTTATTTATTAAATTATACT
129 TCTGATTTTGGCCGTTTTT-TTTTATTTTATTTTATTTTCGA-ATTTTATTTTTTAAAATATACT
* * *
90080912 ATTTTCGTATTTTATTTTTTTATAATATTTTAGTACATAATGTTTCAAATGTATTATTTTTCGTG
192 ATTTTCGTATTTTATTTTTTAATAATATTTTAATACATAATGTTTCAAATGTATTA-TTTTAGTG
*
90080977 -TTTTTTATATTAATTTAGTAAAAAAAACTCT-GATTTTTGCCCTTTGTTTTTAT
256 TTTTTTTATATTAATTTAGT--AAAAAACTCTAG-TTTTGGCCCTTTGTTTTTAT
* * *
90081030 TATTTATTCTATTTTTGGATTTTATTTTTTTAAAATATCCTAATTTCGTATTTTATTTTTATATT
1 TATTTATTTTATTTTCGGATTTTA-TTTTTTAAAATATACTAATTTCGTATTTTATTTTTATATT
* *
90081095 ATTTTAGTATATAATGTTTCAAATATATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACT
65 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACT
* * * * * *
90081160 CTGGTTTTGGCCCTTTGTTCTTATTTT-TTTTATTTTCGTATTTTATTTTTTAAAAATAAACTAT
130 CTGATTTTGGCCGTTTTTTTTTATTTTATTTTATTTTCGAATTTTATTTTTT-AAAATATACTAT
90081224 TTTCGTATTTTATTTTT
194 TTTCGTATTTTATTTTT
90081241 ATATTATTTA
Statistics
Matches: 470, Mismatches: 35, Indels: 26
0.89 0.07 0.05
Matches are distributed among these distances:
301 4 0.01
302 45 0.10
303 20 0.04
304 63 0.13
306 3 0.01
307 4 0.01
308 47 0.10
309 77 0.16
310 43 0.09
311 136 0.29
312 23 0.05
313 5 0.01
ACGTcount: A:0.27, C:0.06, G:0.07, T:0.59
Consensus pattern (307 bp):
TATTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTAATTTCGTATTTTATTTTTATATTA
TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACTC
TGATTTTGGCCGTTTTTTTTTATTTTATTTTATTTTCGAATTTTATTTTTTAAAATATACTATTT
TCGTATTTTATTTTTTAATAATATTTTAATACATAATGTTTCAAATGTATTATTTTAGTGTTTTT
TTATATTAATTTAGTAAAAAACTCTAGTTTTGGCCCTTTGTTTTTAT
Found at i:90082133 original size:96 final size:99
Alignment explanation
Indices: 90082009--90082214 Score: 253
Period size: 96 Copynumber: 2.1 Consensus size: 99
90081999 ATTTTTAAAT
* * ** *
90082009 TTTAGGG-TTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGTGTTTGTTAATTAAATTAATTA
1 TTTAGGGTTTTTAAGGAAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA
*
90082073 CT-AA-TTTT-AAAAAATTAGATTATGG-TTTAGTG
66 -TAAATTTTTAAAAAAATTAGATTA-GGATTTAGGG
* * *
90082105 TTTATGGTTTTTAAGG-AAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA
1 TTTAGGGTTTTTAAGGAAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA
*
90082169 TAAATTTTTAAAAAAATTATATTAGGACTTTAGGG
66 TAAATTTTTAAAAAAATTAGATTAGGA-TTTAGGG
90082204 TTTAGGGTTTT
1 TTTAGGGTTTT
90082215 AGGGTATTTA
Statistics
Matches: 93, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
95 1 0.01
96 49 0.53
97 14 0.15
98 13 0.14
99 16 0.17
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.42
Consensus pattern (99 bp):
TTTAGGGTTTTTAAGGAAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA
TAAATTTTTAAAAAAATTAGATTAGGATTTAGGG
Found at i:90082665 original size:126 final size:126
Alignment explanation
Indices: 90082302--90082838 Score: 810
Period size: 126 Copynumber: 4.3 Consensus size: 126
90082292 AAAAGCTTTT
* *
90082302 ACGTGGACGTTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* *
90082367 ATAGTGTCAAAAACGCTTCAAGTAGGATGCATTGTCAGCAAAAGTATTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * *
90082428 ACGTAGACGTTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAA-A-GTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* *
90082491 ATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
90082552 ACATGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAACTAATTTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * * *
90082617 ATAGTGGT-AAAAACGCTTCAAGCAGGATACATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * **
90082678 ACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * *
90082743 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGTAAAAATACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * *
90082804 ATGTGGACGCTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
90082839 TAACTTGGGC
Statistics
Matches: 375, Mismatches: 32, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
124 113 0.30
125 4 0.01
126 256 0.68
127 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:90085959 original size:116 final size:116
Alignment explanation
Indices: 90085784--90086166 Score: 642
Period size: 116 Copynumber: 3.3 Consensus size: 116
90085774 TTTATATTTT
* * *
90085784 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* * * *
90085849 AAAATATAAAAGTAAATTATAATTATTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
90085900 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* **
90085965 ACAATATAAAAGTAAATTACAATTACTTTATTTAAAACAGTCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
90086016 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATT-
90086081 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
90086133 ATTACATGAAA-AATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
90086167 TGTACAAATA
Statistics
Matches: 250, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
116 190 0.76
117 60 0.24
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:90088408 original size:22 final size:22
Alignment explanation
Indices: 90088396--90088445 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 22
90088386 TAACGAGAGT
90088396 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
* *
90088418 TTTGAGA-G-ATTTGAGAGGAA
1 TTTGAGAGGAATTTAAGAGAAA
90088438 TTTGAGAG
1 TTTGAGAG
90088446 AATACTGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 17 0.68
21 1 0.04
22 7 0.28
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.30
Consensus pattern (22 bp):
TTTGAGAGGAATTTAAGAGAAA
Found at i:90088419 original size:11 final size:11
Alignment explanation
Indices: 90088396--90088447 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
90088386 TAACGAGAGT
*
90088396 TTTGAGAGGAA
1 TTTGAGAGAAA
*
90088407 TTTAAGAGAAA
1 TTTGAGAGAAA
90088418 TTTGAGAG--A
1 TTTGAGAGAAA
*
90088427 TTTGAGAGGAA
1 TTTGAGAGAAA
90088438 TTTGAGAGAA
1 TTTGAGAGAA
90088448 TACTGAAAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
9 9 0.26
11 26 0.74
ACGTcount: A:0.40, C:0.00, G:0.31, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:90088459 original size:31 final size:31
Alignment explanation
Indices: 90088396--90088459 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
90088386 TAACGAGAGT
* *
90088396 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGGAATTTAAGAGAAATCTGAAAGA
*
90088427 TTTGAGAGGAATTTGAGAG-AATACTGAAAGA
1 TTTGAGAGGAATTTAAGAGAAAT-CTGAAAGA
90088458 TT
1 TT
90088460 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.41, C:0.02, G:0.28, T:0.30
Consensus pattern (31 bp):
TTTGAGAGGAATTTAAGAGAAATCTGAAAGA
Found at i:90089530 original size:15 final size:16
Alignment explanation
Indices: 90089496--90089533 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
90089486 TTGATTTATT
90089496 TTTATTTCTAATTAAA
1 TTTATTTCTAATTAAA
* *
90089512 TTTATTTTTAA-TCAA
1 TTTATTTCTAATTAAA
90089527 TTTATTT
1 TTTATTT
90089534 GATTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTATTTCTAATTAAA
Found at i:90091178 original size:32 final size:32
Alignment explanation
Indices: 90091137--90091218 Score: 103
Period size: 32 Copynumber: 2.6 Consensus size: 32
90091127 ATTGTCAATC
*
90091137 ATTTCAATATCCAACAAGCTT-AAAACATAATA
1 ATTTCAATATCCAACAA-ATTCAAAACATAATA
* **
90091169 ATTTCAATATCTAACAAATTCAAGTCATAATA
1 ATTTCAATATCCAACAAATTCAAAACATAATA
*
90091201 ATTTCAAAATCCAACAAA
1 ATTTCAATATCCAACAAA
90091219 CTAATTTCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 2 0.05
32 41 0.95
ACGTcount: A:0.50, C:0.18, G:0.02, T:0.29
Consensus pattern (32 bp):
ATTTCAATATCCAACAAATTCAAAACATAATA
Found at i:90091206 original size:16 final size:17
Alignment explanation
Indices: 90091162--90091207 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
90091152 AAGCTTAAAA
90091162 CATAATAATTTCAATAT
1 CATAATAATTTCAATAT
* * *
90091179 C-TAACAAATTCAA-GT
1 CATAATAATTTCAATAT
90091194 CATAATAATTTCAA
1 CATAATAATTTCAA
90091208 AATCCAACAA
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
15 2 0.09
16 20 0.87
17 1 0.04
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (17 bp):
CATAATAATTTCAATAT
Found at i:90093839 original size:20 final size:20
Alignment explanation
Indices: 90093814--90093852 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
90093804 ACTTGTAACT
90093814 TACCATAATCTTTCACAACA
1 TACCATAATCTTTCACAACA
*
90093834 TACCATAGTCTTTCACAAC
1 TACCATAATCTTTCACAAC
90093853 TTAAACATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.31, G:0.03, T:0.31
Consensus pattern (20 bp):
TACCATAATCTTTCACAACA
Found at i:90094044 original size:42 final size:43
Alignment explanation
Indices: 90093943--90094059 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
90093933 TACCAATACC
* ** ** *
90093943 ATATCCCAGATATGGTCTTACATGGCATCTTGTATCAATGCCG
1 ATATCCCAGATATGGTCTTACACGAAATCTCATATCAATGCCA
* * *
90093986 ATAGCCCAGCTATGGTCTTACACGAAATCTCATATCGATG-CA
1 ATATCCCAGATATGGTCTTACACGAAATCTCATATCAATGCCA
*
90094028 ATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATATCCCAGATATGGTCTTACACGAAATCTCA
90094060 ACTGACTCTA
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 30 0.48
43 32 0.52
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (43 bp):
ATATCCCAGATATGGTCTTACACGAAATCTCATATCAATGCCA
Found at i:90116699 original size:19 final size:21
Alignment explanation
Indices: 90116652--90116723 Score: 58
Period size: 22 Copynumber: 3.4 Consensus size: 21
90116642 AAATCATAGA
* * *
90116652 ATAATATTATGATTATTATTAA
1 ATAATTTTATGATT-TTTTTAT
90116674 ATAAATTTTAT-ATTTTTTT-T
1 AT-AATTTTATGATTTTTTTAT
* *
90116694 ATAATTGTATGCTTTTTTTAAT
1 ATAATTTTATGATTTTTTT-AT
90116716 ATAATTTT
1 ATAATTTT
90116724 TAAAATTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
19 7 0.17
20 9 0.22
21 4 0.10
22 13 0.32
23 7 0.17
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (21 bp):
ATAATTTTATGATTTTTTTAT
Found at i:90118266 original size:20 final size:20
Alignment explanation
Indices: 90118241--90118279 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
90118231 ATTTACTAAT
*
90118241 ATAATTCTATTTATTAAAAA
1 ATAATTCTATTTAATAAAAA
*
90118261 ATAATTTTATTTAATAAAA
1 ATAATTCTATTTAATAAAA
90118280 TATGATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
ATAATTCTATTTAATAAAAA
Found at i:90122036 original size:26 final size:25
Alignment explanation
Indices: 90122007--90122057 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
90121997 ATTTTATAAT
90122007 AAATAATATAGATTTTGAAGTTTTTA
1 AAATAATATAGATTTTGAA-TTTTTA
* **
90122033 AAATTATATATTTTTTGAATTTTTA
1 AAATAATATAGATTTTGAATTTTTA
90122058 GGATTTGGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (25 bp):
AAATAATATAGATTTTGAATTTTTA
Found at i:90132984 original size:42 final size:42
Alignment explanation
Indices: 90132938--90133057 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 42
90132928 CTTACATGGG
*
90132938 ATCTCACATAGATGCAATATCCCAGATATGGTCTTATACGAA
1 ATCTCATATAGATGCAATATCCCAGATATGGTCTTATACGAA
* * * * * * **
90132980 ATCTCATTTTGATACGATGTCCCAAACGTGGTCTTATACGAA
1 ATCTCATATAGATGCAATATCCCAGATATGGTCTTATACGAA
* *
90133022 ATCTCATATCA-ACGCAATATCCCAGATAAGGTCTTA
1 ATCTCATAT-AGATGCAATATCCCAGATATGGTCTTA
90133058 CATGATAACA
Statistics
Matches: 58, Mismatches: 19, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (42 bp):
ATCTCATATAGATGCAATATCCCAGATATGGTCTTATACGAA
Found at i:90147121 original size:19 final size:20
Alignment explanation
Indices: 90147081--90147120 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
90147071 TAGTTACTTA
*
90147081 TTATTATTATTTGTTAATTT
1 TTATTATTATTTATTAATTT
90147101 TTATTA-TATTTATT-ATTT
1 TTATTATTATTTATTAATTT
90147119 TT
1 TT
90147121 TTTCTTATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 7 0.37
20 6 0.32
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (20 bp):
TTATTATTATTTATTAATTT
Found at i:90159419 original size:96 final size:96
Alignment explanation
Indices: 90159255--90159445 Score: 303
Period size: 96 Copynumber: 2.0 Consensus size: 96
90159245 CTTCTTTTTT
* *
90159255 CTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTTGTC
1 CTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGTATC
* *
90159320 TGCTCCATCGTTCCC-TCCGATGACAGACTTG
66 TGCTCCATCATTCCCAT-CGATAACAGACTTG
* *
90159351 CTCCTCTTTGCCCTCTTGGCTTCGGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCGTATC
1 CTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGTATC
*
90159416 TGCTCGATCATTCCCATCGATAACAGACTT
66 TGCTCCATCATTCCCATCGATAACAGACTT
90159446 CCTCGGACAC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 86 0.99
97 1 0.01
ACGTcount: A:0.13, C:0.36, G:0.18, T:0.34
Consensus pattern (96 bp):
CTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGTATC
TGCTCCATCATTCCCATCGATAACAGACTTG
Found at i:90161959 original size:47 final size:47
Alignment explanation
Indices: 90161881--90162343 Score: 737
Period size: 47 Copynumber: 9.8 Consensus size: 47
90161871 CCCTTCGGGA
* * * * * *
90161881 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90161928 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90161975 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90162022 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90162071 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90162118 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90162165 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90162212 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
90162259 CTTATCACATATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90162308 CTTATCACATATATACACTTTCACATTCATCACATC
1 CTTATCACATATATACACTTTCACATTCATCACATC
90162344 ACAATTCCAC
Statistics
Matches: 385, Mismatches: 27, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 296 0.77
49 89 0.23
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90162211 original size:190 final size:188
Alignment explanation
Indices: 90161881--90162343 Score: 764
Period size: 190 Copynumber: 2.4 Consensus size: 188
90161871 CCCTTCGGGA
* * * * *
90161881 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
90161946 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGACTCATCACATATATACACTTTCACATTCATCACATC
* *
90162011 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
90162071 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
90162136 TTTCACATTCATCACATCGGCCATTAGGACTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGACTCATCACATATATACACTTTCACATTCATCACATC
*
90162201 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90162259 CTTATCACATATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATAC
90162324 ACTTTCACATTCATCACATC
64 ACTTTCACATTCATCACATC
90162344 ACAATTCCAC
Statistics
Matches: 253, Mismatches: 18, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
188 45 0.18
190 208 0.82
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGACTCATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90162296 original size:237 final size:237
Alignment explanation
Indices: 90161881--90162343 Score: 820
Period size: 237 Copynumber: 2.0 Consensus size: 237
90161871 CCCTTCGGGA
* * * * *
90161881 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
90161946 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
90162011 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTAT
90162076 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
196 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
90162118 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-ACTCATCACATATATACA
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCT-ATCACATATATACA
*
90162182 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
90162247 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTA
130 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTA
90162312 TCACATATATACACTTTCACATTCATCACATC
195 TCACATATATACACTTTCACATTCATCACATC
90162344 ACAATTCCAC
Statistics
Matches: 215, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
236 2 0.01
237 213 0.99
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (237 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTAT
CACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:90167579 original size:31 final size:31
Alignment explanation
Indices: 90167541--90167664 Score: 212
Period size: 31 Copynumber: 4.0 Consensus size: 31
90167531 GACCATATCT
*
90167541 GGGATATGACATCGGCATCAATATGAAATCC
1 GGGATATGACATCGGCATCAATATAAAATCC
90167572 GGGATATGACATCGGCATCAATATAAAATCC
1 GGGATATGACATCGGCATCAATATAAAATCC
* *
90167603 AGGATATGACATCAGCATCAATATAAAATCC
1 GGGATATGACATCGGCATCAATATAAAATCC
*
90167634 GGGATATGACATCGGCATCAATATGAAATCC
1 GGGATATGACATCGGCATCAATATAAAATCC
90167665 CATGTAAGAC
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 87 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (31 bp):
GGGATATGACATCGGCATCAATATAAAATCC
Found at i:90167690 original size:48 final size:48
Alignment explanation
Indices: 90167634--90167755 Score: 176
Period size: 48 Copynumber: 2.5 Consensus size: 48
90167624 TATAAAATCC
*
90167634 GGGATATGACATCGGCATCAATATGAAATCCCATGTAAGACCATATCTA
1 GGGATATGACATTGGCATCAATATGAAATCCCATGTAAGACCATATC-A
*
90167683 -GGATATGACATTGGCATCGAA-ATGAGATCCCATGTAAGACCATATCA
1 GGGATATGACATTGGCATC-AATATGAAATCCCATGTAAGACCATATCA
* *
90167730 GGGATATGGCATTGGCATTAATATGA
1 GGGATATGACATTGGCATCAATATGA
90167756 GGTCCTGTAT
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
47 3 0.05
48 61 0.92
49 2 0.03
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.25
Consensus pattern (48 bp):
GGGATATGACATTGGCATCAATATGAAATCCCATGTAAGACCATATCA
Found at i:90167756 original size:48 final size:48
Alignment explanation
Indices: 90167634--90167821 Score: 175
Period size: 48 Copynumber: 3.9 Consensus size: 48
90167624 TATAAAATCC
*
90167634 GGGATATGACATCGGCATCAATATGAAATCCCATGTAAGACCATATCTA
1 GGGATATGACATCGGCATCAATATGAGATCCCATGTAAGACCATATC-A
*
90167683 -GGATATGACATTGGCATCGAA-ATGAGATCCCATGTAAGACCATATCA
1 GGGATATGACATCGGCATC-AATATGAGATCCCATGTAAGACCATATCA
* * * * ** * * *
90167730 GGGATATGGCATTGGCATTAATATGAGGTCCTGTATAAGACCATGTCT
1 GGGATATGACATCGGCATCAATATGAGATCCCATGTAAGACCATATCA
* * * ** *
90167778 GGGACATGGCATCGGCACCGTTATGAGA-CTTCATGTAAGACCAT
1 GGGATATGACATCGGCATCAATATGAGATC-CCATGTAAGACCAT
90167822 GTCTGGGACA
Statistics
Matches: 114, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
47 4 0.04
48 108 0.95
49 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (48 bp):
GGGATATGACATCGGCATCAATATGAGATCCCATGTAAGACCATATCA
Found at i:90167858 original size:42 final size:42
Alignment explanation
Indices: 90167765--90168029 Score: 200
Period size: 42 Copynumber: 6.1 Consensus size: 42
90167755 AGGTCCTGTA
* *
90167765 TAAGACCATGTCTGGGACATGGCATCGGCACCGTTATGAGACTTCATG
1 TAAGACCATGTCTGGGACATGGCTTC-G-A----TATGAGATTTCATG
* *
90167813 TAAGACCATGTCTGGGACATGGCTTTGATATGATATTTCATG
1 TAAGACCATGTCTGGGACATGGCTTCGATATGAGATTTCATG
* * ** * * *
90167855 TAAGACCATATTTGGGACATGGCACCGATACGAGATTCCGTG
1 TAAGACCATGTCTGGGACATGGCTTCGATATGAGATTTCATG
* * * *
90167897 TAAGACCATAG-CTGGG-CTACTGG-TATCGATATGATATTACGTA
1 TAAGACCAT-GTCTGGGAC-A-TGGCT-TCGATATGAGATTTCATG
*
90167940 TAAGACCATGTCTGGGACATGGCATT-GTTATGAGATTTCATG
1 TAAGACCATGTCTGGGACATGGC-TTCGATATGAGATTTCATG
* *
90167982 TAAGACCATAAT-TGGG-CTATTGGCTTCGATATGAGATTACATG
1 TAAGACCAT-GTCTGGGAC-A-TGGCTTCGATATGAGATTTCATG
90168025 TAAGA
1 TAAGA
90168030 TCATATTCGA
Statistics
Matches: 176, Mismatches: 29, Indels: 29
0.75 0.12 0.12
Matches are distributed among these distances:
41 2 0.01
42 90 0.51
43 56 0.32
44 2 0.01
46 1 0.01
47 1 0.01
48 24 0.14
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATGGCTTCGATATGAGATTTCATG
Found at i:90168047 original size:85 final size:84
Alignment explanation
Indices: 90167797--90168052 Score: 259
Period size: 85 Copynumber: 3.0 Consensus size: 84
90167787 CATCGGCACC
* * *
90167797 GTTATGAGACTTCATGTAAGACCAT-GTCTGGGAC-ATGGCTTTGATATGATATTTCATGTAAGA
1 GTTATGAGATTTCATGTAAGACCATAGT-TGGG-CTATGGCTTCGATATGATATTACATGTAAGA
* **
90167860 CCATATTTGGGACATGGCACC
64 CCATATTCGGGACATGGCATT
* * * * * * *
90167881 GATACGAGATTCCGTGTAAGACCATAGCTGGGCTACTGG-TATCGATATGATATTACGTATAAGA
1 GTTATGAGATTTCATGTAAGACCATAGTTGGGCTA-TGGCT-TCGATATGATATTACATGTAAGA
*
90167945 CCAT-GTCTGGGACATGGCATT
64 CCATATTC-GGGACATGGCATT
* * *
90167966 GTTATGAGATTTCATGTAAGACCATAATTGGGCTATTGGCTTCGATATGAGATTACATGTAAGAT
1 GTTATGAGATTTCATGTAAGACCATAGTTGGGCTA-TGGCTTCGATATGATATTACATGTAAGAC
* *
90168031 CATATTCGAGATATGGCATT
65 CATATTCGGGACATGGCATT
90168051 GT
1 GT
90168053 ACGACATATG
Statistics
Matches: 137, Mismatches: 28, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
83 1 0.01
84 27 0.20
85 106 0.77
86 3 0.02
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (84 bp):
GTTATGAGATTTCATGTAAGACCATAGTTGGGCTATGGCTTCGATATGATATTACATGTAAGACC
ATATTCGGGACATGGCATT
Found at i:90171552 original size:18 final size:18
Alignment explanation
Indices: 90171529--90171565 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
90171519 TATAGTTTAC
*
90171529 TATTCGATTTATTCAAAT
1 TATTCGAGTTATTCAAAT
*
90171547 TATTCGAGTTATTCTAAT
1 TATTCGAGTTATTCAAAT
90171565 T
1 T
90171566 CGAAAACTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.11, G:0.08, T:0.51
Consensus pattern (18 bp):
TATTCGAGTTATTCAAAT
Found at i:90182298 original size:44 final size:44
Alignment explanation
Indices: 90182235--90182323 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
90182225 TATGCTGTGT
90182235 CTCGAAGAAAGGATATAACACATTTTAAACATTCATCAGGAGTA
1 CTCGAAGAAAGGATATAACACATTTTAAACATTCATCAGGAGTA
*
90182279 CTCGAAGCAAGGATATAACACATTTTAAACATTCATCAGGAGTA
1 CTCGAAGAAAGGATATAACACATTTTAAACATTCATCAGGAGTA
90182323 C
1 C
90182324 AGGACCGCTC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.25
Consensus pattern (44 bp):
CTCGAAGAAAGGATATAACACATTTTAAACATTCATCAGGAGTA
Found at i:90183686 original size:43 final size:43
Alignment explanation
Indices: 90183604--90183688 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
90183594 AAACCGTACA
*
90183604 ATGCCAACGTCCCAAACGTGGTCTTACATGTAACCACATATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACATGTAAACACATATCG
*
90183647 ATGCC-ACTGTCCCAAACAG-GGTCTTAC-TCGTAAATACATATC
1 ATGCCAAC-GTCCCAAAC-GTGGTCTTACAT-GTAAACACATATC
90183689 AGAATCACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
42 3 0.08
43 33 0.89
44 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACGTGGTCTTACATGTAAACACATATCG
Found at i:90191141 original size:18 final size:19
Alignment explanation
Indices: 90191107--90191147 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
90191097 CTATGCAGAC
90191107 TTTTGGGATTGTTTTTT-G
1 TTTTGGGATTGTTTTTTGG
*
90191125 TTTT-GGATTTTTATTTTGG
1 TTTTGGGATTGTT-TTTTGG
90191144 TTTT
1 TTTT
90191148 CTAGCATGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 7 0.35
18 8 0.40
19 5 0.25
ACGTcount: A:0.07, C:0.00, G:0.22, T:0.71
Consensus pattern (19 bp):
TTTTGGGATTGTTTTTTGG
Found at i:90197714 original size:15 final size:15
Alignment explanation
Indices: 90197690--90197720 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
90197680 AGATTTGAAT
90197690 TATGTAGAGGAAGTG
1 TATGTAGAGGAAGTG
*
90197705 TATGTGGAGGAAGTG
1 TATGTAGAGGAAGTG
90197720 T
1 T
90197721 TCTGTGTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.42, T:0.29
Consensus pattern (15 bp):
TATGTAGAGGAAGTG
Found at i:90202163 original size:3 final size:3
Alignment explanation
Indices: 90202114--90202145 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
90202104 ATGTGCTAGT
90202114 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
90202146 TAAGCAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:90204390 original size:15 final size:16
Alignment explanation
Indices: 90204370--90204399 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
90204360 CTACATAATG
90204370 TATATAA-ATGTAAAA
1 TATATAATATGTAAAA
90204385 TATATAATATGTAAA
1 TATATAATATGTAAA
90204400 TATTTAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (16 bp):
TATATAATATGTAAAA
Found at i:90207178 original size:18 final size:19
Alignment explanation
Indices: 90207140--90207178 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
90207130 TAATGGTACT
*
90207140 AATTATATAGAAGTTTCTC
1 AATTATATAGAAGTTTATC
90207159 AATTATATAG-AGTTTATC
1 AATTATATAGAAGTTTATC
90207177 AA
1 AA
90207179 AACTTGCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (19 bp):
AATTATATAGAAGTTTATC
Found at i:90208236 original size:10 final size:9
Alignment explanation
Indices: 90208207--90208232 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
90208197 AAATACCATA
90208207 AAAATTTCT
1 AAAATTTCT
90208216 AAAATTTCT
1 AAAATTTCT
90208225 AAAATTTC
1 AAAATTTC
90208233 CTAAGAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (9 bp):
AAAATTTCT
Found at i:90219105 original size:30 final size:30
Alignment explanation
Indices: 90219071--90219128 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
90219061 ATGAATGAGA
*
90219071 TCAGCTTAAATGCAGCAATATTTCATGGTT
1 TCAGCTTAAATGCAACAATATTTCATGGTT
90219101 TCAGCTTAAATGCAACAATATTTCATGG
1 TCAGCTTAAATGCAACAATATTTCATGG
90219129 CTCAACTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (30 bp):
TCAGCTTAAATGCAACAATATTTCATGGTT
Found at i:90220434 original size:15 final size:16
Alignment explanation
Indices: 90220398--90220439 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
90220388 TGTCAGTGAC
*
90220398 ACATTAATTTAATTAA
1 ACATAAATTTAATTAA
*
90220414 ATATAAATTTAA-TAA
1 ACATAAATTTAATTAA
90220429 ACATAAATTTA
1 ACATAAATTTA
90220440 TATTTATAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (16 bp):
ACATAAATTTAATTAA
Found at i:90221250 original size:12 final size:12
Alignment explanation
Indices: 90221235--90221293 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
90221225 AAACAGCAAA
90221235 AACAACAAAAAT
1 AACAACAAAAAT
*
90221247 AACAACAAAAAG
1 AACAACAAAAAT
* *
90221259 AGCAAAAAAAAT
1 AACAACAAAAAT
* * *
90221271 AATAGCAAAAAAC
1 AACAAC-AAAAAT
90221284 AACAACAAAA
1 AACAACAAAA
90221294 TACCAAGAAC
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
12 26 0.74
13 9 0.26
ACGTcount: A:0.75, C:0.15, G:0.05, T:0.05
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:90221293 original size:24 final size:23
Alignment explanation
Indices: 90221232--90221317 Score: 69
Period size: 24 Copynumber: 3.9 Consensus size: 23
90221222 TACAAACAGC
90221232 AAAAACAAC-AAAAATAACAACA
1 AAAAACAACAAAAAATAACAACA
* *
90221254 AAAAGAGCAA-AAAAAATAATAGCA
1 AAAA-A-CAACAAAAAATAACAACA
90221278 AAAAACAACAACAAAAT-AC--C-
1 AAAAACAACAA-AAAATAACAACA
*
90221298 AAGAACAACAAAAAA-AACAA
1 AAAAACAACAAAAAATAACAA
90221318 GATAATTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 17
0.71 0.05 0.23
Matches are distributed among these distances:
19 6 0.12
20 10 0.19
21 1 0.02
22 7 0.13
23 5 0.10
24 23 0.44
ACGTcount: A:0.74, C:0.16, G:0.05, T:0.05
Consensus pattern (23 bp):
AAAAACAACAAAAAATAACAACA
Found at i:90227216 original size:21 final size:21
Alignment explanation
Indices: 90227174--90227218 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
90227164 GACCTTAAAA
** * *
90227174 CATGCCAAAATATTTTCTTTT
1 CATGCCAAAATAAATACCTTT
90227195 CATGCCAAAATAAATACCTTT
1 CATGCCAAAATAAATACCTTT
90227216 CAT
1 CAT
90227219 TCCCATACCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.22, G:0.04, T:0.38
Consensus pattern (21 bp):
CATGCCAAAATAAATACCTTT
Found at i:90228292 original size:15 final size:15
Alignment explanation
Indices: 90228274--90228333 Score: 75
Period size: 15 Copynumber: 3.9 Consensus size: 15
90228264 ACTGCTTGAA
*
90228274 TAATAAACTAACAGC
1 TAATAGACTAACAGC
*
90228289 TAATTAGACTACCAGC
1 TAA-TAGACTAACAGC
*
90228305 TAACAGACTAACAGC
1 TAATAGACTAACAGC
*
90228320 TATTAGACTAACAG
1 TAATAGACTAACAG
90228334 ACTCTAACAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
15 25 0.66
16 13 0.34
ACGTcount: A:0.45, C:0.22, G:0.12, T:0.22
Consensus pattern (15 bp):
TAATAGACTAACAGC
Found at i:90231328 original size:26 final size:26
Alignment explanation
Indices: 90231299--90231354 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
90231289 TGGTACAAAT
90231299 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
90231325 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
90231351 TGAT
1 TGAT
90231355 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:90236844 original size:14 final size:13
Alignment explanation
Indices: 90236811--90236844 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
90236801 TATAGATTTT
90236811 AATTATAAATTAA
1 AATTATAAATTAA
*
90236824 AAATATAAATTTAA
1 AATTATAAA-TTAA
90236838 AATTATA
1 AATTATA
90236845 TATGAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATTATAAATTAA
Found at i:90237354 original size:166 final size:169
Alignment explanation
Indices: 90236972--90237381 Score: 520
Period size: 169 Copynumber: 2.4 Consensus size: 169
90236962 AAATACTATA
*
90236972 TGCTCTTGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGAGTGCTCTAACCAACTGAGC
1 TGCTCTTGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTGAGC
* * * ** *
90237037 TACAAGA--ATTGCTGAAAGCATGACAGAAAGTTGTTAAAAGAACCATGAGTTTCATGACTAAAG
66 TACAAGAGCCTTGATGAAAACATGACAGAAAGTTCCTAAAAGAACCATGAGTTTCATAACTAAAG
* * *
90237100 TAGATTACATGTCAGAACTCAAAAGAGAATAAAAAGCACCT
131 TAGAGTA-A-GTCAGAACTCAAAAGAGAATAAAAAACAACT
90237141 TGCTCTTGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTGAGC
1 TGCTCTTGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTGAGC
** * * *
90237206 TACAAGAGCCTTGATGAAAATTTGATAG-AA-TTAACCT-AAAGAA-C-TTAGTTTCTTTAACTA
66 TACAAGAGCCTTGATGAAAACATGACAGAAAGTT--CCTAAAAGAACCATGAGTTTC-ATAACTA
90237266 AAGTAG-GT-A-TCAGACAC-CAAAAGAGAA-AATAAATTACAACT
128 AAGTAGAGTAAGTCAGA-ACTCAAAAGAGAATAA-AAA--ACAACT
90237307 TGCTCTTGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTGAGC
1 TGCTCTTGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTGAGC
90237372 TACAAGAGCC
66 TACAAGAGCC
90237382 AGATGGTAAC
Statistics
Matches: 217, Mismatches: 15, Indels: 21
0.86 0.06 0.08
Matches are distributed among these distances:
163 2 0.01
164 18 0.08
165 2 0.01
166 80 0.37
168 8 0.04
169 85 0.39
170 8 0.04
171 14 0.06
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.24
Consensus pattern (169 bp):
TGCTCTTGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTGAGC
TACAAGAGCCTTGATGAAAACATGACAGAAAGTTCCTAAAAGAACCATGAGTTTCATAACTAAAG
TAGAGTAAGTCAGAACTCAAAAGAGAATAAAAAACAACT
Found at i:90238136 original size:19 final size:17
Alignment explanation
Indices: 90238114--90238153 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
90238104 ATAATTTCTC
90238114 ATAATTTCTATATTTTTAT
1 ATAATTTCTA-ATTTTT-T
*
90238133 ATAATTTTTAATTTTTT
1 ATAATTTCTAATTTTTT
90238150 ATAA
1 ATAA
90238154 AATTTTCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 6 0.30
19 9 0.45
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
ATAATTTCTAATTTTTT
Found at i:90242606 original size:29 final size:31
Alignment explanation
Indices: 90242549--90242607 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 31
90242539 TAAATTTGAT
90242549 ATTTAATCTTTATACATTAATTTTTAATATA
1 ATTTAATCTTTATACATTAATTTTTAATATA
* *
90242580 ATTTAAT-TTT-TATATTACTTTTTAATAT
1 ATTTAATCTTTATACATTAATTTTTAATAT
90242608 TGTTAATTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 16 0.62
30 3 0.12
31 7 0.27
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (31 bp):
ATTTAATCTTTATACATTAATTTTTAATATA
Found at i:90242744 original size:29 final size:30
Alignment explanation
Indices: 90242684--90242746 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
90242674 TTTGAAAGCG
** *
90242684 AATTTTTAAATCTAAAAAGTAGATGAATTA
1 AATTTTTAAAAATAAAAAGTAGATGAACTA
90242714 AATTTTTAAAAAT-AAAAGTAGGATG-ACTA
1 AATTTTTAAAAATAAAAAGTA-GATGAACTA
90242743 AATT
1 AATT
90242747 CCAAATGAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.51, C:0.03, G:0.11, T:0.35
Consensus pattern (30 bp):
AATTTTTAAAAATAAAAAGTAGATGAACTA
Found at i:90252334 original size:21 final size:21
Alignment explanation
Indices: 90252308--90252359 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
90252298 CGACACATAA
*
90252308 GTGCCTGAAACGACAAACGAG
1 GTGCCTGAAACGACAAACAAG
*** *
90252329 GTGCCTGCTGCGACACACAAG
1 GTGCCTGAAACGACAAACAAG
90252350 GTGCCTGAAA
1 GTGCCTGAAA
90252360 TATGACACAT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.29, T:0.13
Consensus pattern (21 bp):
GTGCCTGAAACGACAAACAAG
Found at i:90252642 original size:29 final size:29
Alignment explanation
Indices: 90252564--90252643 Score: 117
Period size: 28 Copynumber: 2.8 Consensus size: 29
90252554 CACCAAAATG
* * *
90252564 TCCAACCAAAACACACCAGTATCATATAA
1 TCCATCCAAAACACACCAGAATAATATAA
*
90252593 TCC-TCCCAAACACACCAGAATAATATAA
1 TCCATCCAAAACACACCAGAATAATATAA
90252621 TCCATCCAAAACACACCAGAATA
1 TCCATCCAAAACACACCAGAATA
90252644 GCACAAAGTG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
28 24 0.53
29 21 0.47
ACGTcount: A:0.47, C:0.33, G:0.04, T:0.16
Consensus pattern (29 bp):
TCCATCCAAAACACACCAGAATAATATAA
Found at i:90261762 original size:37 final size:39
Alignment explanation
Indices: 90261675--90261785 Score: 119
Period size: 40 Copynumber: 3.0 Consensus size: 39
90261665 CACACCAGGA
*
90261675 TGGCGACCAACGCCTCATCGGATAGTTCGAAGCAAATAAG
1 TGGCGACCAACGCCTCATCGGATAGTCCGAAGC-AATAAG
* * *
90261715 TGACGACCAACGTCTCATCGGCTAAG-CCGAAGC-A-AAG
1 TGGCGACCAACGCCTCATCGGAT-AGTCCGAAGCAATAAG
90261752 TGGCGACCAACGCCTCATC---TA-TCCGAAGCAATAA
1 TGGCGACCAACGCCTCATCGGATAGTCCGAAGCAATAA
90261786 TGACACACCA
Statistics
Matches: 61, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
33 8 0.13
34 2 0.03
35 2 0.03
37 20 0.33
38 1 0.02
40 26 0.43
41 2 0.03
ACGTcount: A:0.32, C:0.29, G:0.23, T:0.16
Consensus pattern (39 bp):
TGGCGACCAACGCCTCATCGGATAGTCCGAAGCAATAAG
Found at i:90262940 original size:3 final size:3
Alignment explanation
Indices: 90262932--90262965 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
90262922 ACCATTTGTA
90262932 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
90262966 TTATTAAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:90270864 original size:12 final size:12
Alignment explanation
Indices: 90270847--90270871 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
90270837 TAGGCGTCTA
90270847 AAAATGGAAATG
1 AAAATGGAAATG
90270859 AAAATGGAAATG
1 AAAATGGAAATG
90270871 A
1 A
90270872 TTTATTTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:90271065 original size:25 final size:26
Alignment explanation
Indices: 90271000--90271070 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 26
90270990 ATTTTCTCAA
*
90271000 AATTTTACCAGGGGTAAAATCATCAT
1 AATTTTATCAGGGGTAAAATCATCAT
* * *
90271026 AATTTTTTCGGGGGTAAAA-CGTCAT
1 AATTTTATCAGGGGTAAAATCATCAT
*
90271051 AATTTTATCATGGGTAAAAT
1 AATTTTATCAGGGGTAAAAT
90271071 TTGGATGAGA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
25 21 0.57
26 16 0.43
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.35
Consensus pattern (26 bp):
AATTTTATCAGGGGTAAAATCATCAT
Found at i:90274459 original size:22 final size:22
Alignment explanation
Indices: 90274415--90274459 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
90274405 TTAATCATTA
* **
90274415 TTATTCAGTATCAGTCATTTAT
1 TTATTCAGTAACAGTCAAATAT
90274437 TTATTCAGTAACAGTCAAATAT
1 TTATTCAGTAACAGTCAAATAT
90274459 T
1 T
90274460 CAGTAGCAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (22 bp):
TTATTCAGTAACAGTCAAATAT
Found at i:90274461 original size:18 final size:17
Alignment explanation
Indices: 90274438--90274473 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
90274428 GTCATTTATT
90274438 TATTCAGTAACAGTCAAA
1 TATTCAGTAACAGT-AAA
*
90274456 TATTCAGTAGCAGTAAA
1 TATTCAGTAACAGTAAA
90274473 T
1 T
90274474 TTTTTTCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (17 bp):
TATTCAGTAACAGTAAA
Found at i:90274608 original size:6 final size:6
Alignment explanation
Indices: 90274593--90274626 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
90274583 AGAATACACC
* *
90274593 GTAACG GTAACA GTAATA GTAACA GTAACA GTAA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAA
90274627 GGTACAGAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.21
Consensus pattern (6 bp):
GTAACA
Found at i:90275611 original size:3 final size:3
Alignment explanation
Indices: 90275603--90275635 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
90275593 ATATAAAACC
*
90275603 ATA ATA ATA ATA ATA ATG ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
90275636 TTTATGCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:90296194 original size:11 final size:11
Alignment explanation
Indices: 90296174--90296208 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
90296164 ATTGACTAAG
*
90296174 AATAATATAAA
1 AATAAAATAAA
90296185 AATAAAAT-AA
1 AATAAAATAAA
90296195 AATAAAATAAA
1 AATAAAATAAA
90296206 AAT
1 AAT
90296209 TTGTATTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:90297902 original size:38 final size:38
Alignment explanation
Indices: 90297851--90298000 Score: 237
Period size: 38 Copynumber: 3.9 Consensus size: 38
90297841 AGAAGCGTAA
** * **
90297851 TGTTATTCAGGCTCTGTGCCTAGCAAGTCTTGTGCTAG
1 TGTTATTTGGGCTCTGTGCCTAGCAAGTTTTGTGCCGG
90297889 TGTTATTTGGGCTCTGTGCCTAGCAAGTTTTGTGCCGG
1 TGTTATTTGGGCTCTGTGCCTAGCAAGTTTTGTGCCGG
90297927 TGTTATTTGGGCTCTGTGCCTAGCAAGTTTTGTGCCGG
1 TGTTATTTGGGCTCTGTGCCTAGCAAGTTTTGTGCCGG
* *
90297965 TGTTATTTGGGCTCTGTGCCTAGCAGGCTTTGTGCC
1 TGTTATTTGGGCTCTGTGCCTAGCAAGTTTTGTGCC
90298001 AATGTATTGA
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 105 1.00
ACGTcount: A:0.11, C:0.20, G:0.30, T:0.39
Consensus pattern (38 bp):
TGTTATTTGGGCTCTGTGCCTAGCAAGTTTTGTGCCGG
Found at i:90298993 original size:22 final size:23
Alignment explanation
Indices: 90298946--90298993 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
90298936 TAAAAGTAAG
*
90298946 GTACATGTGTAATAAACATGTTT
1 GTACATGTGTAATAAACATGTAT
* *
90298969 GTACATTTGTAA-ATACATGTAT
1 GTACATGTGTAATAAACATGTAT
90298991 GTA
1 GTA
90298994 TTTACTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (23 bp):
GTACATGTGTAATAAACATGTAT
Found at i:90299048 original size:16 final size:16
Alignment explanation
Indices: 90299013--90299051 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
90299003 AATTTAAGAA
* *
90299013 ATAATAATTATGTTACT
1 ATAAT-ATTATATTAAT
90299030 ATAATATTATATTAAT
1 ATAATATTATATTAAT
90299046 ATAATA
1 ATAATA
90299052 AACATAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (16 bp):
ATAATATTATATTAAT
Found at i:90299151 original size:21 final size:20
Alignment explanation
Indices: 90299073--90299152 Score: 63
Period size: 21 Copynumber: 3.8 Consensus size: 20
90299063 AATAATAAAT
* * *
90299073 GAAATAAAGATAGAAAAAGA
1 GAAAGAAAGAAAGAAATAGA
*
90299093 GAAAGTAAAGAGACGAAATAGA
1 GAAAG-AAAGA-AAGAAATAGA
*
90299115 G-AAGAACATGAGAGAAATAGA
1 GAAAGAA-A-GAAAGAAATAGA
90299136 GAAAAGAAAGAAAGAAA
1 G-AAAGAAAGAAAGAAA
90299153 GGGGAAATAG
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
20 6 0.13
21 25 0.53
22 11 0.23
23 5 0.11
ACGTcount: A:0.65, C:0.03, G:0.25, T:0.07
Consensus pattern (20 bp):
GAAAGAAAGAAAGAAATAGA
Found at i:90302619 original size:12 final size:12
Alignment explanation
Indices: 90302599--90302638 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
90302589 TAGTTTGGGG
* *
90302599 TTTTGATTTCGA
1 TTTTAATTTCAA
90302611 TTTTAATTTCAA
1 TTTTAATTTCAA
*
90302623 TTTTAGTTTCAA
1 TTTTAATTTCAA
90302635 TTTT
1 TTTT
90302639 GGGTTTTGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.62
Consensus pattern (12 bp):
TTTTAATTTCAA
Found at i:90303287 original size:14 final size:13
Alignment explanation
Indices: 90303226--90303287 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
90303216 ATTGAAAGCC
90303226 TTAACTTTGGGGTT
1 TTAA-TTTGGGGTT
* *
90303240 ATAATTT-TGGTT
1 TTAATTTGGGGTT
* *
90303252 TTAGTTTAGGGTT
1 TTAATTTGGGGTT
*
90303265 TTCATTTGGGGTT
1 TTAATTTGGGGTT
90303278 TTATATTTGG
1 TTA-ATTTGG
90303288 TTTTGGATTG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
12 9 0.24
13 19 0.51
14 9 0.24
ACGTcount: A:0.16, C:0.03, G:0.26, T:0.55
Consensus pattern (13 bp):
TTAATTTGGGGTT
Found at i:90303333 original size:25 final size:23
Alignment explanation
Indices: 90303269--90303334 Score: 60
Period size: 25 Copynumber: 2.7 Consensus size: 23
90303259 AGGGTTTTCA
*
90303269 TTTGGGGTTTTATATTTGGTTTTGG
1 TTTGGGG-TTTA-ATTTAGTTTTGG
* *
90303294 ATTGAGGTTTCAATTTCAGTTTTGG
1 TTTGGGGTTT-AATTT-AGTTTTGG
90303319 TTTGGGGTTATAATTT
1 TTTGGGGTT-TAATTT
90303335 TGGGTTTAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
24 7 0.21
25 25 0.76
26 1 0.03
ACGTcount: A:0.15, C:0.03, G:0.27, T:0.55
Consensus pattern (23 bp):
TTTGGGGTTTAATTTAGTTTTGG
Found at i:90303674 original size:15 final size:15
Alignment explanation
Indices: 90303640--90303672 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
90303630 TGGTTTTGGA
*
90303640 TTTTAGTGTTAGTGT
1 TTTTAGAGTTAGTGT
90303655 TTTTAGAGTTA-TGT
1 TTTTAGAGTTAGTGT
90303669 TTTT
1 TTTT
90303673 TAAGTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.15, C:0.00, G:0.21, T:0.64
Consensus pattern (15 bp):
TTTTAGAGTTAGTGT
Found at i:90304226 original size:123 final size:125
Alignment explanation
Indices: 90303883--90304403 Score: 704
Period size: 123 Copynumber: 4.1 Consensus size: 125
90303873 GCAATAAATT
* * *
90303883 TTTTTCTACAGTAGTTTTTGAAAAAATAAATTTGAGAAGACGTTTCTGAACAAATAGTGCCAAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAAT-AATTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAA
* *
90303948 ACGCTTCAAGCAGGATGCACTATCAGTAAAAATACTGAAAAAAAGCTCCCACGTGGACGCGT
65 ACGCTTCAAGCAGGATGCACTATCAGTAAAATTACTG-AAAAAAGCTCCCACGTGGACGCGC
* *
90304010 TTTTTCTACAGTTGTTTCTGAAAAAATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAATAA-TTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAA
* * * * *
90304075 ACGCTTCAAGCAGGATACACTATTAGTAAAATTACTGAAAAAATCTCCCACATGGACGGGC
65 ACGCTTCAAGCAGGATGCACTATCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCGC
* *
90304136 TTTTTCTACAGTAGCTTGTGAAAAAA-AA-TTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAATAATTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAA
* * * * ** *
90304199 CGCTTCAAGCAGGATGTACTGTCAGTAAAAGTACTGAAAAAAGATCTTATGTGGACGCGC
66 CGCTTCAAGCAGGATGCACTATCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCGC
* *
90304259 TTTTTCTACAGTGGTTTCTGAAAAAATAATTTTGAGAAGATGTTGTTTCTGAACAAATAGTTTCA
1 TTTTTCTACAGTAGTTTCTGAAAAAATAA-TTTGAGAAGA---TGTTTCTGAACAAATAGTGTCA
* * * * * *
90304324 AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACACTC
62 AAAACGCTTCAAGCAGGATGCACTATCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCGC
90304388 TTTTTCTACAGTAGTT
1 TTTTTCTACAGTAGTT
90304404 CTTATTTGGC
Statistics
Matches: 343, Mismatches: 44, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
123 105 0.31
124 2 0.01
125 2 0.01
126 54 0.16
127 91 0.27
129 89 0.26
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (125 bp):
TTTTTCTACAGTAGTTTCTGAAAAAATAATTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAA
CGCTTCAAGCAGGATGCACTATCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCGC
Found at i:90307543 original size:54 final size:54
Alignment explanation
Indices: 90307429--90307549 Score: 147
Period size: 54 Copynumber: 2.2 Consensus size: 54
90307419 GCATTATTTA
* * *
90307429 TATTTTATTAAAAATATAAAAATATTCAAAATATTACCTTATTTAAAAGAACTTC
1 TATTTTATTAAAAATATAAAAAAATT-AAAATATTACCTTATTCAAAACAACTTC
* * *
90307484 TATTTTATTAAAAATATAAAAGTAAATT-ACA-ATTACTTTATTCAAAACAACTTT
1 TATTTTATTAAAAATATAAAA--AAATTAAAATATTACCTTATTCAAAACAACTTC
90307538 TATTTTATTAAA
1 TATTTTATTAAA
90307550 TGTAACAATA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
54 31 0.53
55 23 0.40
57 4 0.07
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (54 bp):
TATTTTATTAAAAATATAAAAAAATTAAAATATTACCTTATTCAAAACAACTTC
Found at i:90307680 original size:129 final size:131
Alignment explanation
Indices: 90307467--90307719 Score: 413
Period size: 129 Copynumber: 1.9 Consensus size: 131
90307457 AAATATTACC
* *** *
90307467 TTATTTAAAAGAACTTCTATTTTATTAAAAATATAAAAGTAAATTACAATTACTTTATTCAAAAC
1 TTATTCAAAAGAACTTCTATTTTATTAAAAATATAAAAGTAAATTACAATTAAAATATTAAAAAC
* *
90307532 AACTTTTATTTTATTAAATGTAACAATAT-AAAAAAGTTTGTACAAATATA-TTAAAAATATTGG
66 AACTTTTATTTTATTAAATGAAACAATATAAAAAAAGTTTATACAAATATATTTAAAAATATTGG
90307595 T
131 T
90307596 TTATTCAAAAGAACTT-TCATTTTATTAAAAATATAAAAGTAAATTACAATTAAAATATTAAAAA
1 TTATTCAAAAGAACTTCT-ATTTTATTAAAAATATAAAAGTAAATTACAATTAAAATATTAAAAA
90307660 CAACTTTTATTTTATTAAATGAAACAATATAAAAAAAGTTTATACAAATATATTTAAAAA
65 CAACTTTTATTTTATTAAATGAAACAATATAAAAAAAGTTTATACAAATATATTTAAAAA
90307720 AATAAATTTT
Statistics
Matches: 114, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
128 1 0.01
129 86 0.75
130 20 0.18
131 7 0.06
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.38
Consensus pattern (131 bp):
TTATTCAAAAGAACTTCTATTTTATTAAAAATATAAAAGTAAATTACAATTAAAATATTAAAAAC
AACTTTTATTTTATTAAATGAAACAATATAAAAAAAGTTTATACAAATATATTTAAAAATATTGG
T
Found at i:90308711 original size:7 final size:7
Alignment explanation
Indices: 90308701--90308725 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
90308691 CATAATACAT
90308701 AATACTA
1 AATACTA
90308708 AATACTA
1 AATACTA
90308715 AATACTA
1 AATACTA
90308722 AATA
1 AATA
90308726 TGAAACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:90313147 original size:94 final size:95
Alignment explanation
Indices: 90313039--90313215 Score: 275
Period size: 94 Copynumber: 1.9 Consensus size: 95
90313029 TTACTTGAAC
* * * *
90313039 TTTTTTTTTTCCTTTTCATCTCTGTTTTAGTTTCAGATCTAAGCTTCTTTATTTGTA-GTTCAGT
1 TTTTTCTTTGCCTTTTCATCTCTGTTGTAGTTTCAGATCTAAGCTTCTTTACTTGTATGTTCAGT
90313103 GAGTTTTTTGGTTTTCAGCTTTAGAACAAG
66 GAGTTTTTTGGTTTTCAGCTTTAGAACAAG
* * *
90313133 TTTTTCTTTGCCTTTTCATCTCTGTTGTAGTTTCAGATTTATGCTTCTTTACTTGTATTTTCAGT
1 TTTTTCTTTGCCTTTTCATCTCTGTTGTAGTTTCAGATCTAAGCTTCTTTACTTGTATGTTCAGT
*
90313198 GGGTTTTTTGGTTTTCAG
66 GAGTTTTTTGGTTTTCAG
90313216 TTTTTGTTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
94 51 0.69
95 23 0.31
ACGTcount: A:0.14, C:0.14, G:0.16, T:0.56
Consensus pattern (95 bp):
TTTTTCTTTGCCTTTTCATCTCTGTTGTAGTTTCAGATCTAAGCTTCTTTACTTGTATGTTCAGT
GAGTTTTTTGGTTTTCAGCTTTAGAACAAG
Found at i:90316864 original size:14 final size:15
Alignment explanation
Indices: 90316845--90316873 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
90316835 GATGTTTTGT
90316845 TCAAGTACAA-AATC
1 TCAAGTACAACAATC
90316859 TCAAGTACAACAATC
1 TCAAGTACAACAATC
90316874 ATTTGTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.24, G:0.07, T:0.21
Consensus pattern (15 bp):
TCAAGTACAACAATC
Found at i:90320297 original size:17 final size:17
Alignment explanation
Indices: 90320275--90320310 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
90320265 GACTATAACA
90320275 ATTTGCTCTTTTGAGTT
1 ATTTGCTCTTTTGAGTT
90320292 ATTTGCTCTTTTGAGTT
1 ATTTGCTCTTTTGAGTT
90320309 AT
1 AT
90320311 AAAACAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.14, C:0.11, G:0.17, T:0.58
Consensus pattern (17 bp):
ATTTGCTCTTTTGAGTT
Found at i:90325709 original size:40 final size:37
Alignment explanation
Indices: 90325665--90325768 Score: 127
Period size: 37 Copynumber: 2.7 Consensus size: 37
90325655 ACACACCAAT
*
90325665 TTGGCACCCAGTGCCTCATCGGATAATTGAAAGTAGTAAA
1 TTGGCACCCAGTGCCTCATCGGATAA---AAAGAAGTAAA
* * * *
90325705 TTGGCACCCAATGTCTCATCGGTTAAAACGAAGTAAA
1 TTGGCACCCAGTGCCTCATCGGATAAAAAGAAGTAAA
*
90325742 TTGGCACCCAGTGCCTCATCGAATAAA
1 TTGGCACCCAGTGCCTCATCGGATAAA
90325769 TCTGAAGTGA
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
37 32 0.58
40 23 0.42
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (37 bp):
TTGGCACCCAGTGCCTCATCGGATAAAAAGAAGTAAA
Found at i:90326312 original size:25 final size:25
Alignment explanation
Indices: 90326237--90326312 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
90326227 TTCGCGTTTG
*
90326237 TTTCTTTCT-TCTTTCTCTTTTTCTT
1 TTTCTTTCTCTCCTT-TCTTTTTCTT
* ** *
90326262 TTTCTTTCTTTCCTTTCTGCTACTT
1 TTTCTTTCTCTCCTTTCTTTTTCTT
90326287 TTTACTTTCTCT-CTTTCTTTTTCTT
1 TTT-CTTTCTCTCCTTTCTTTTTCTT
90326312 T
1 T
90326313 ATTTCATTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
25 30 0.73
26 11 0.27
ACGTcount: A:0.03, C:0.25, G:0.01, T:0.71
Consensus pattern (25 bp):
TTTCTTTCTCTCCTTTCTTTTTCTT
Found at i:90335726 original size:45 final size:44
Alignment explanation
Indices: 90335592--90335765 Score: 269
Period size: 44 Copynumber: 4.0 Consensus size: 44
90335582 TTTTATCAAA
* * *
90335592 TCACCGGCATT-TCGCCTGCTAGGCTCGAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAGTATC
* *
90335635 TCACTGGCATTATAGCCTACTAGGCTCAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAGTATC
*
90335679 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAGGCCCGAATAGTATC
*
90335724 TCACCAGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAGTA
90335766 CTGTATAATA
Statistics
Matches: 119, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
43 10 0.08
44 67 0.56
45 42 0.35
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAGTATC
Done.