Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 274 of 343
Found at i:90904635 original size:46 final size:46
Alignment explanation
Indices: 90904483--90904691 Score: 162
Period size: 46 Copynumber: 4.5 Consensus size: 46
90904473 ATTGTGAGCT
* * * * *
90904483 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGT-A-AGTC
* * * *
90904529 AGTGTAAGACCATGTCTCGGACATGGCTTCAGCATTGAGACG--AGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGACGTAAGT-C
*
90904576 TAGTGTAATACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGTC
* * *
90904623 AGTTTAAGACATGTCTAGGACATGCATCAG-CTACGAGA--TGAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGACGTAAGTC
* *
90904667 AGTGTAATACCATGTCTGGAACATG
1 AGTGTAAGA-CATGTCTGGGACATG
90904692 ACATTGGCAC
Statistics
Matches: 131, Mismatches: 22, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 57 0.44
47 28 0.21
48 17 0.13
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGTC
Found at i:90913584 original size:46 final size:44
Alignment explanation
Indices: 90913366--90913584 Score: 147
Period size: 46 Copynumber: 4.6 Consensus size: 44
90913356 ATTGTGAGCT
* *
90913366 AGTGTAAGACAAGTTTGGGACATGCATCGGCCACATCATGAGA-GCCAGTCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG---C-T-ATGAGATG--AGT-C
* ** *
90913417 AGTGTAAGACCATGTCTAGGACATGGC-TTTGCCATTGAGATGAGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGAGATGAGT-C
* *
90913464 TAGTGTAAGACATGTTTGGGACATGCATCGGCCT-TGAGACGTAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGA--TGAGTC
* * * *
90913511 AGTGCAAGACACGTCTGGGACATGCATCGGCTACGAGATGCGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGAGTC
90913555 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
90913585 TGCGCCTTAC
Statistics
Matches: 135, Mismatches: 21, Indels: 29
0.73 0.11 0.16
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 43 0.32
47 20 0.15
48 19 0.14
49 2 0.01
51 9 0.07
52 13 0.10
53 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGAGTC
Found at i:90920033 original size:22 final size:22
Alignment explanation
Indices: 90919999--90920068 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 22
90919989 ATAGGGGTAA
* *
90919999 GATATGCTATGATATGAAATAT
1 GATACGCTCTGATATGAAATAT
* **
90920021 GATACGTTCTGATGCGAAATAT
1 GATACGCTCTGATATGAAATAT
* * *
90920043 AATATGCTCTGATATGAGATAT
1 GATACGCTCTGATATGAAATAT
90920065 GATA
1 GATA
90920069 AGCTTCAATA
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (22 bp):
GATACGCTCTGATATGAAATAT
Found at i:90922839 original size:21 final size:19
Alignment explanation
Indices: 90922809--90922858 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 19
90922799 ATCGAGAACT
*
90922809 GTTTTAATTTAGTAATCTATG
1 GTTTTTATTTA-TAAT-TATG
*
90922830 GTTTTTATTTATAATTCTG
1 GTTTTTATTTATAATTATG
90922849 G-TTTTATTTA
1 GTTTTTATTTA
90922859 ACAATTTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 9 0.33
19 4 0.15
20 4 0.15
21 10 0.37
ACGTcount: A:0.24, C:0.04, G:0.12, T:0.60
Consensus pattern (19 bp):
GTTTTTATTTATAATTATG
Found at i:90922855 original size:18 final size:20
Alignment explanation
Indices: 90922809--90922858 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
90922799 ATCGAGAACT
90922809 GTTTTAATTTAGTAATCTATG
1 GTTTT-ATTTAGTAATCTATG
*
90922830 GTTTTTATTTA-TAAT-TCTG
1 G-TTTTATTTAGTAATCTATG
90922849 GTTTTATTTA
1 GTTTTATTTA
90922859 ACAATTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 9 0.33
19 4 0.15
20 4 0.15
21 6 0.22
22 4 0.15
ACGTcount: A:0.24, C:0.04, G:0.12, T:0.60
Consensus pattern (20 bp):
GTTTTATTTAGTAATCTATG
Found at i:90923272 original size:22 final size:22
Alignment explanation
Indices: 90923247--90923290 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
90923237 ATGAGGGTAG
90923247 GATATGCTATGATATGAAATAC
1 GATATGCTATGATATGAAATAC
* *
90923269 GATATGCTTTGATATGAGATAC
1 GATATGCTATGATATGAAATAC
90923291 TATAACCTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.34
Consensus pattern (22 bp):
GATATGCTATGATATGAAATAC
Found at i:90926292 original size:12 final size:12
Alignment explanation
Indices: 90926275--90926299 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
90926265 TGAATCTTGG
90926275 TGGAAAATTGCT
1 TGGAAAATTGCT
90926287 TGGAAAATTGCT
1 TGGAAAATTGCT
90926299 T
1 T
90926300 TAATGGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (12 bp):
TGGAAAATTGCT
Found at i:90931797 original size:45 final size:44
Alignment explanation
Indices: 90931724--90931828 Score: 138
Period size: 45 Copynumber: 2.3 Consensus size: 44
90931714 GCTATACACC
* *
90931724 TAAAATGAGTAAGACCATAACTGAAAGATGCTATGGTATTATGA
1 TAAAATGAGTAAGACCATAACTGAAAGATGCTATGGCATCATGA
* * * *
90931768 TAAAGATGAGTAAGATCATAGCTGTAAGATGTTATGGCATCATGA
1 TAAA-ATGAGTAAGACCATAACTGAAAGATGCTATGGCATCATGA
90931813 TATAAATGAGTAAGAC
1 TA-AAATGAGTAAGAC
90931829 TATGGCTTAA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 4 0.08
45 46 0.88
46 2 0.04
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.28
Consensus pattern (44 bp):
TAAAATGAGTAAGACCATAACTGAAAGATGCTATGGCATCATGA
Found at i:90942200 original size:30 final size:30
Alignment explanation
Indices: 90942150--90942273 Score: 185
Period size: 30 Copynumber: 4.1 Consensus size: 30
90942140 TTTTATTATG
* *
90942150 CCAATATCTCGATACCCATATCTTTGACCTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
*
90942181 CCAATATTTGATACTCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
90942211 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
90942241 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
90942271 CCA
1 CCA
90942274 TAAATATGGA
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 78 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:90955992 original size:13 final size:13
Alignment explanation
Indices: 90955974--90956025 Score: 70
Period size: 13 Copynumber: 3.8 Consensus size: 13
90955964 AAACTTCAAG
90955974 ATAATAATAAAGA
1 ATAATAATAAAGA
90955987 ATAATAATAAAGA
1 ATAATAATAAAGA
90956000 ATAATAATTAAA-A
1 ATAATAA-TAAAGA
90956013 ATGAATAAATAAA
1 AT-AAT-AATAAA
90956026 TAAAAATAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
13 23 0.64
14 11 0.31
15 2 0.06
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (13 bp):
ATAATAATAAAGA
Found at i:90956289 original size:20 final size:19
Alignment explanation
Indices: 90956259--90956314 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 19
90956249 GGAGAAGGGA
90956259 GAAAGGAAAAGAAAGAGGAAG
1 GAAA-GAAAAGAAAG-GGAAG
90956280 GAAAGAAAAGAAAGGGAAG
1 GAAAGAAAAGAAAGGGAAG
90956299 GAAAGAAAAAGAAAGG
1 GAAAG-AAAAGAAAGG
90956315 AAAGAAGAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 10 0.29
20 20 0.59
21 4 0.12
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (19 bp):
GAAAGAAAAGAAAGGGAAG
Found at i:90956325 original size:15 final size:15
Alignment explanation
Indices: 90956264--90956325 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
90956254 AGGGAGAAAG
* *
90956264 GAAAAGAAAGAGGAA
1 GAAAGGAAAGAAGAA
* *
90956279 GGAAAGAAAAGAA-AG
1 -GAAAGGAAAGAAGAA
* *
90956294 GGAAGGAAAGAAAAA
1 GAAAGGAAAGAAGAA
90956309 GAAAGGAAAGAAGAA
1 GAAAGGAAAGAAGAA
90956324 GA
1 GA
90956326 GAAAGAGAGC
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
14 10 0.28
15 17 0.47
16 9 0.25
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (15 bp):
GAAAGGAAAGAAGAA
Found at i:90963504 original size:4 final size:4
Alignment explanation
Indices: 90963495--90963561 Score: 59
Period size: 4 Copynumber: 16.5 Consensus size: 4
90963485 AGAAGAAAAG
*
90963495 GAAA GAAA G--A GCAAA GAAA GAAA G-AA GAGA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA G-AAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
*
90963541 AAAA GGAAGA GAAGA GAAA GA
1 GAAA -GAA-A GAA-A GAAA GA
90963562 GAGGGGGGTT
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
2 2 0.04
3 3 0.06
4 35 0.66
5 12 0.23
6 1 0.02
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:90963512 original size:11 final size:10
Alignment explanation
Indices: 90963491--90963563 Score: 61
Period size: 11 Copynumber: 7.7 Consensus size: 10
90963481 GGGAAGAAGA
90963491 AAAG-GAAAG
1 AAAGAGAAAG
90963500 AAAGAGCAAAG
1 AAAGAG-AAAG
90963511 -AA-AGAAAG
1 AAAGAGAAAG
90963519 AAGAGAGAAAG
1 AA-AGAGAAAG
90963530 -AA-AGAAAG
1 AAAGAGAAAG
90963538 AAA-A-AAAG
1 AAAGAGAAAG
*
90963546 GAAGAGAAGAG
1 AAAGAGAA-AG
90963557 AAAGAGA
1 AAAGAGA
90963564 GGGGGGTTCG
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
8 16 0.30
9 12 0.23
10 7 0.13
11 18 0.34
ACGTcount: A:0.68, C:0.01, G:0.30, T:0.00
Consensus pattern (10 bp):
AAAGAGAAAG
Found at i:90963515 original size:15 final size:14
Alignment explanation
Indices: 90963491--90963561 Score: 69
Period size: 15 Copynumber: 5.1 Consensus size: 14
90963481 GGGAAGAAGA
90963491 AAAG-GAAAGAAAG
1 AAAGAGAAAGAAAG
90963504 AGCAA-AGAAAGAAAG
1 A--AAGAGAAAGAAAG
90963519 AAGAGAGAAAGAAAG
1 AA-AGAGAAAGAAAG
90963534 AAAGA-AAA-AAAG
1 AAAGAGAAAGAAAG
*
90963546 GAAGAGAAGAGAAAG
1 AAAGAGAA-AGAAAG
90963561 A
1 A
90963562 GAGGGGGGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
12 8 0.17
13 7 0.15
14 5 0.10
15 28 0.58
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.00
Consensus pattern (14 bp):
AAAGAGAAAGAAAG
Found at i:90963519 original size:19 final size:18
Alignment explanation
Indices: 90963495--90963563 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 18
90963485 AGAAGAAAAG
90963495 GAAAGAAAGAGCAAAGAAA
1 GAAAGAAAGAG-AAAGAAA
90963514 GAAAGAAGAGAGAAAGAAA
1 GAAAGAA-AGAGAAAGAAA
90963533 GAAAGAAA-A-AAAGGAAGA
1 GAAAGAAAGAGAAA-GAA-A
90963551 GAAGAGAAAGAGA
1 GAA-AGAAAGAGA
90963564 GGGGGGTTCG
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
16 3 0.07
17 4 0.09
18 5 0.11
19 26 0.59
20 5 0.11
21 1 0.02
ACGTcount: A:0.68, C:0.01, G:0.30, T:0.00
Consensus pattern (18 bp):
GAAAGAAAGAGAAAGAAA
Found at i:90963536 original size:23 final size:22
Alignment explanation
Indices: 90963487--90963561 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 22
90963477 ATGAGGGAAG
*
90963487 AAGAAAAGGAAAGAAAGAGCAAAGA
1 AAGAAAA--AAAGGAAGAG-AAAGA
*
90963512 AAGAAAGAAGAGAGAA-AGAAAGA
1 AAGAAA-AAAAG-GAAGAGAAAGA
90963535 AAGAAAAAAAGGAAGAGAAGAGA
1 AAGAAAAAAAGGAAGAGAA-AGA
90963558 AAGA
1 AAGA
90963562 GAGGGGGGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
21 3 0.07
22 8 0.19
23 18 0.42
24 5 0.12
25 8 0.19
26 1 0.02
ACGTcount: A:0.69, C:0.01, G:0.29, T:0.00
Consensus pattern (22 bp):
AAGAAAAAAAGGAAGAGAAAGA
Found at i:90969312 original size:943 final size:945
Alignment explanation
Indices: 90967463--90969351 Score: 2465
Period size: 943 Copynumber: 2.0 Consensus size: 945
90967453 CTTTAGGTTG
* * *
90967463 ATTAATTGAAATCTCTTTCTAATTAAAACCCCTATTGTCGCATTAACTCAATCTATGGATTCCCT
1 ATTAATTGAAATCTCTTTCTAATTAAAACCCCTATTATCGCATTAACTCAATATATGAATTCCCT
* *
90967528 TATTAGATTTGACTCTAATCCGGAAAATTTATGTCGTCCTATCTCTAGGATTGCATTCAACTCCG
66 TATTAGATTTGACTCTAATCCGGAAAATTTATGTCATCCTATCTCTAGGATTGCATGCAACTCCG
* * * * * *
90967593 CTTATTTATGGATGATCTACTCTTAAACAGGGACTTTTGCTCCACTGATTAAGCACGTCAAAACT
131 CTTAATTATGGAGGATCTACTCATAAACAGGGACTTTTGCTCCACTGAGTAAGCACATCAAAACC
* * *
90967658 TGAATTAATACCCTGGAATATTAAAACAAGAATTTAGAACTCACAATTAAGAATAAGAATAAGTC
196 TGAATTAATACCCTGGAATATTAAAACAAGAATTTAAAACTAACAATTAAGAATAAGAATAAGTA
* *
90967723 TTTATCATATAATTCAAATAGTAATAAGATTCGTCATAGGGTTCATCTCCCTTAGGTATTTAGGG
261 TTTATCATATAATTCAAATAGTAATAAGATTCATCATAGGGTTCAACTCCCTTAGGTATTTAGGG
* * * *
90967788 AGTTTAGTTCATAATAATAATGGAAAACATCTCAAAGTTTGGAAAACAATAAAACATAAAGAAAC
326 AATTTAGTTC--AATAATAATGGAAAACATCTCAAAGATTGGAAAACAACAAAACATAAAAAAAC
* *
90967853 CAAAAGAACTTCTAAGAAATTGGATGGAAATCTTCAGTCTTGATGTAGATCCTGGCTTCGAGGTG
389 CAAAAGAACTTCTAAGAAATTGAATGGAAATCTTCAGTCTTGAAGTAGATCCTGGCTTCGAGGTG
* * *
90967918 ATTCCGATGGCTGTTCTTGAGTATTGCTTGCCTCCAACTCTGTGTGTCCCCCTAATCCTCTTCTA
454 AGTCCGATGGCTGATCTTGACTATTGCTTGCCTCCAACTCTGTGTGTCCCCCTAATCCTCTTCTA
* * *
90967983 GGGTGTTTATATAGACTTTTGAATGCCCAAAATAGTCCAAAATTAGCCTTTTTCGAGTAGAACTA
519 GGGTGTTTAAATAGACTTTGGAATGCCCAAAATAGACCAAAATTAGCCTTTTTCGAGTAGAACTA
* * * * *
90968048 GACTTGGGCTTGACAAGGACACGGCCGTGTGCCACGCTCGTATGAAGGTGCTTAAGCCGTGTGTA
584 GACTTGAGCTCGACAAGAACACGGCCGTGTGCCACGCTCGTATGAAGGTGCTCAAGCCGTGTGCA
* * * * *** * *
90968113 CTACTGAGTTGATTTTTAGTCAACACGGCCATATCCCACGGGCGTGTGGCCTTCCCGTGTGACTC
649 ATACTGAGTTGATTTATAGTCAACACGGCCATATCACACGGGCATGCAACCTGCCCGTGTGACAC
* * * * ***
90968178 ACACGGGCATGTGGATCACCCGTGTGGAAGTGCTTAGGCCATGTGAAACACTGTTTTAAGCCCAT
714 ACACGGGCATATGGATCACCCATGTAGAAGTGCCTAGGCCATGTGAAACACTAAATTAAGCCCAT
* * * *
90968243 TTGGTCCCTTTTTTGTCCGTTTCTTGCTCTTTTCGCCTTCCTATGCTCACCTAAGTATAAAACAA
779 TTGGTCCATTTTTCGCCCGTTTCTTGCTCTTTTCGCCTTCCTAAGCTCACCTAAGTATAAAACAA
* * * * *
90968308 GAATTTAAAGGATTAGGAGAATCGAATTCAATGAAATCAATGAAAAATCATCCATAAATATGCCA
844 GAAATTAAAGAATTAGAAGAATCAAATTCAATGAAATCAATGAAAAATCATCCAAAAATATGCCA
*
90968373 AGCATAGGGTAAAAATATGTATATATTATGGTTTATC
909 AGCATAGGGTAAAAAGATGTATATATTATGGTTTATC
*
90968410 ATTAATTGAAATCTCTTTCTAATTAAAACCCCTATTATCGCATTAACTCGATATATGAATTCCCT
1 ATTAATTGAAATCTCTTTCTAATTAAAACCCCTATTATCGCATTAACTCAATATATGAATTCCCT
* *
90968475 TATTAGATTTGACTCTAATTC-GACAGATTTATGTCATCCTATCTCTAGGATTGCATGCAACTCC
66 TATTAGATTTGACTCTAATCCGGA-AAATTTATGTCATCCTATCTCTAGGATTGCATGCAACTCC
90968539 GCTTAATTATGGAGGATCTACTCATAAACAGGGACTTTTGCTCCACTGAGTAAGCACATCAAAAC
130 GCTTAATTATGGAGGATCTACTCATAAACAGGGACTTTTGCTCCACTGAGTAAGCACATCAAAAC
* * * *
90968604 CTGAATTAATATCCTGGAATATTAAAGCAATG-A-TTAAAACTAATAATTAATAATAAG-ATAAG
195 CTGAATTAATACCCTGGAATATTAAAACAA-GAATTTAAAACTAACAATTAAGAATAAGAATAAG
* * *
90968666 TATTTATCATATAATTCAAATAGTAATAAGATTTATCTTAGGTTTCAACTTCCC-TAGGTATTTA
259 TATTTATCATATAATTCAAATAGTAATAAGATTCATCATAGGGTTCAAC-TCCCTTAGGTATTTA
* * *
90968730 GGGAATTTAGTTC-ATAGTAATGGAAAGCATCTCAAA-ATTGGAAAAATAACAAAACATAAAAAA
323 GGGAATTTAGTTCAATAATAATGGAAAACATCTCAAAGATTGG-AAAACAACAAAACATAAAAAA
* *
90968793 ACCCAAAGAACTTCTAAGGAAATTGAATGGAGATCTTCAGTCTTGAAGTAGA-CCT-GCTTCCGA
387 ACCAAAAGAACTTCTAA-GAAATTGAATGGAAATCTTCAGTCTTGAAGTAGATCCTGGCTT-CGA
* * * * * *
90968856 GTTGAGTCTGATGGCT-ATCTATGACTATT-TTCTGCCT-TATATTCTGTGTGTCCCCCTTGATC
450 GGTGAGTCCGATGGCTGATCT-TGACTATTGCT-TGCCTCCA-ACTCTGTGTGTCCCCC-TAATC
*
90968918 CTCTTCTAGGGTGTTTAAATAGACTTTGGAATGCCCAAAATA-ACCTAAAATTAGTC-TTTTCTG
511 CTCTTCTAGGGTGTTTAAATAGACTTTGGAATGCCCAAAATAGACC-AAAATTAGCCTTTTTC-G
* *
90968981 AGTAGAATTAGACTTGAGCTCGACAAGAACACGGCCGTGTGCCACGC-CG-GTGTAAGGGTGCTC
574 AGTAGAACTAGACTTGAGCTCGACAAGAACACGGCCGTGTGCCACGCTCGTATG-AA-GGTGCTC
* * ** * *
90969044 AAGCCGTGTGCAATTCTG-GCTTGGTTTA-ATGTTGACATGGCCATGA-CACATGGGCATGCAAC
637 AAGCCGTGTGCAATACTGAG-TTGATTTATA-GTCAACACGGCCAT-ATCACACGGGCATGCAAC
* * *
90969106 CTGCCCGTGTGTCACACACGGGCGTATGGATTACCCATGTAGAAGTGCCTAGGCCATGTGAAACA
699 CTGCCCGTGTGACACACACGGGCATATGGATCACCCATGTAGAAGTGCCTAGGCCATGTGAAACA
* * *
90969171 CTAAATTAGGCCCAATTT-GTTCATTTTTCGCCCGTTTCTTGCTCTTTTTG-CTATCCTAAGCTC
764 CTAAATTAAGCCC-ATTTGGTCCATTTTTCGCCCGTTTCTTGCTCTTTTCGCCT-TCCTAAGCTC
* * * * * * *
90969234 TCCTAAGTATAAAACATGAAATTAAAGAATTAGAAGTATCAAATT-TATTAAATCTTATG-ATAA
827 ACCTAAGTATAAAACAAGAAATTAAAGAATTAGAAGAATCAAATTCAATGAAATC-AATGAAAAA
* * *
90969297 TCCTTCCAAAAATATGCCAAGCATGGGGTAAAAAGATGTATATATTATTGTTTAT
891 T-CATCCAAAAATATGCCAAGCATAGGGTAAAAAGATGTATATATTATGGTTTAT
90969352 TAGGAGTGAG
Statistics
Matches: 816, Mismatches: 105, Indels: 46
0.84 0.11 0.05
Matches are distributed among these distances:
941 15 0.02
942 127 0.16
943 366 0.45
944 5 0.01
945 70 0.09
946 26 0.03
947 206 0.25
948 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (945 bp):
ATTAATTGAAATCTCTTTCTAATTAAAACCCCTATTATCGCATTAACTCAATATATGAATTCCCT
TATTAGATTTGACTCTAATCCGGAAAATTTATGTCATCCTATCTCTAGGATTGCATGCAACTCCG
CTTAATTATGGAGGATCTACTCATAAACAGGGACTTTTGCTCCACTGAGTAAGCACATCAAAACC
TGAATTAATACCCTGGAATATTAAAACAAGAATTTAAAACTAACAATTAAGAATAAGAATAAGTA
TTTATCATATAATTCAAATAGTAATAAGATTCATCATAGGGTTCAACTCCCTTAGGTATTTAGGG
AATTTAGTTCAATAATAATGGAAAACATCTCAAAGATTGGAAAACAACAAAACATAAAAAAACCA
AAAGAACTTCTAAGAAATTGAATGGAAATCTTCAGTCTTGAAGTAGATCCTGGCTTCGAGGTGAG
TCCGATGGCTGATCTTGACTATTGCTTGCCTCCAACTCTGTGTGTCCCCCTAATCCTCTTCTAGG
GTGTTTAAATAGACTTTGGAATGCCCAAAATAGACCAAAATTAGCCTTTTTCGAGTAGAACTAGA
CTTGAGCTCGACAAGAACACGGCCGTGTGCCACGCTCGTATGAAGGTGCTCAAGCCGTGTGCAAT
ACTGAGTTGATTTATAGTCAACACGGCCATATCACACGGGCATGCAACCTGCCCGTGTGACACAC
ACGGGCATATGGATCACCCATGTAGAAGTGCCTAGGCCATGTGAAACACTAAATTAAGCCCATTT
GGTCCATTTTTCGCCCGTTTCTTGCTCTTTTCGCCTTCCTAAGCTCACCTAAGTATAAAACAAGA
AATTAAAGAATTAGAAGAATCAAATTCAATGAAATCAATGAAAAATCATCCAAAAATATGCCAAG
CATAGGGTAAAAAGATGTATATATTATGGTTTATC
Found at i:90971828 original size:22 final size:22
Alignment explanation
Indices: 90971796--90971857 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
90971786 AAAATCATAT
*
90971796 ATTAATCATATATTATTTT-AA
1 ATTAATTATATATTATTTTGAA
90971817 ATTTAATTATATATTAATTTTGAA
1 A-TTAATTATATATT-ATTTTGAA
*
90971841 ATAAATTA-ATATTATTT
1 ATTAATTATATATTATTT
90971858 AAAAATAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
21 5 0.14
22 17 0.47
23 11 0.31
24 3 0.08
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
ATTAATTATATATTATTTTGAA
Found at i:90973901 original size:16 final size:18
Alignment explanation
Indices: 90973877--90973925 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
90973867 TATACTTTTA
*
90973877 TATTATATATTA-TAT-T
1 TATTTTATATTATTATGT
90973893 TATTTTATATTATTATGT
1 TATTTTATATTATTATGT
* *
90973911 CATTTTATACTATTA
1 TATTTTATATTATTA
90973926 AATATTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 11 0.39
17 3 0.11
18 14 0.50
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (18 bp):
TATTTTATATTATTATGT
Found at i:90974251 original size:17 final size:17
Alignment explanation
Indices: 90974194--90974251 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
90974184 TTTAAACCAT
*
90974194 TATATTTTATATTTTTA
1 TATATTATATATTTTTA
*
90974211 TATAATTAT-TATTCTTA
1 TAT-ATTATATATTTTTA
90974228 TA-A--ATATATTTTTA
1 TATATTATATATTTTTA
90974242 TATATTATAT
1 TATATTATAT
90974252 CATTAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
13 2 0.06
14 9 0.27
15 2 0.06
17 16 0.48
18 4 0.12
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
TATATTATATATTTTTA
Found at i:90977461 original size:14 final size:14
Alignment explanation
Indices: 90977442--90977471 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
90977432 AAGATATTCT
90977442 TTTTCTAAATAAAG
1 TTTTCTAAATAAAG
*
90977456 TTTTCTAAATGAAG
1 TTTTCTAAATAAAG
90977470 TT
1 TT
90977472 GAATCGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.47
Consensus pattern (14 bp):
TTTTCTAAATAAAG
Found at i:90985929 original size:205 final size:205
Alignment explanation
Indices: 90985571--90986328 Score: 1196
Period size: 205 Copynumber: 3.7 Consensus size: 205
90985561 CAGATCTGGT
* *
90985571 TGAAGTAGATCCAAGATGGTTTGGCATCATTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGA
1 TGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGA
*
90985636 TTTGGCTTTCACGTGCTTACGTTGAAGTAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
66 TTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
** * *
90985701 AACAAATCGAAGCCTGGCATCTCCACTTCGACGGAGGGCAGACACATCGCAGATCCAACCTTCAG
131 AACAAATCGAAGTTTGGCATCTCCACTTCGACAGAGGGCAGACACATAGCAGATCCAACCTTCAG
90985766 ATGTTTATAC
196 ATGTTTATAC
90985776 TGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGA
1 TGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGA
*
90985841 TTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGAG
66 TTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
*
90985906 AACAAATCGAAGTTTGGCATCTCCACTTCGACAGAGGGCAGACGCATAGCAGATCCAACCTTCAG
131 AACAAATCGAAGTTTGGCATCTCCACTTCGACAGAGGGCAGACACATAGCAGATCCAACCTTCAG
*
90985971 ATGTTTATAT
196 ATGTTTATAC
* *
90985981 TGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGA
1 TGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGA
*
90986046 TTTGGCTTTCACGTGCTTATGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
66 TTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
* * * * * * * *
90986111 AACAAACCAAAGTTTGGCATCTCTATTTCAACAGAGAGCAGACACATAACAGATCTC-ACCTTTA
131 AACAAATCGAAGTTTGGCATCTCCACTTCGACAGAGGGCAGACACATAGCAGATC-CAACCTTCA
* *
90986175 GATAATTT-CAC
195 GAT-GTTTATAC
* * * * *
90986186 TGAAACAAGATCCAAGATGATTTGACATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
1 TGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* * *
90986251 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGTCATTTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
90986316 GAACAAATCGAAG
130 GAACAAATCGAAG
90986329 AAGCAGATTT
Statistics
Matches: 511, Mismatches: 39, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
205 382 0.75
206 129 0.25
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (205 bp):
TGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGA
TTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
AACAAATCGAAGTTTGGCATCTCCACTTCGACAGAGGGCAGACACATAGCAGATCCAACCTTCAG
ATGTTTATAC
Found at i:90987024 original size:25 final size:24
Alignment explanation
Indices: 90986977--90987025 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
90986967 CCTGCAAAAT
* *
90986977 GAAAAAGGAAACACAGCAGAGGAA
1 GAAAAAGGAAACAAAGCAAAGGAA
*
90987001 GAAAAAGGAAACTAAATCAAAGGAA
1 GAAAAAGGAAAC-AAAGCAAAGGAA
90987026 TCTCAGCAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.61, C:0.10, G:0.24, T:0.04
Consensus pattern (24 bp):
GAAAAAGGAAACAAAGCAAAGGAA
Found at i:90987989 original size:7 final size:7
Alignment explanation
Indices: 90987979--90988089 Score: 76
Period size: 7 Copynumber: 16.1 Consensus size: 7
90987969 TTTTTATTTT
90987979 TATATTA
1 TATATTA
90987986 TATATTA
1 TATATTA
90987993 TATAATTA
1 TAT-ATTA
90988001 T-T-TTA
1 TATATTA
90988006 TATATTA
1 TATATTA
90988013 CTCATA-T-
1 -T-ATATTA
90988020 TAT-TTA
1 TATATTA
90988026 TATATTA
1 TATATTA
90988033 TATATTA
1 TATATTA
* *
90988040 TTTCACATA
1 TAT-A-TTA
*
90988049 TATACTTT
1 TATA-TTA
90988057 TATATTA
1 TATATTA
90988064 TATATTA
1 TATATTA
90988071 TAT-TTA
1 TATATTA
*
90988077 TTTA-TA
1 TATATTA
90988083 T-TATTA
1 TATATTA
90988089 T
1 T
90988090 GTCATTTTAT
Statistics
Matches: 85, Mismatches: 7, Indels: 25
0.73 0.06 0.21
Matches are distributed among these distances:
5 9 0.11
6 16 0.19
7 38 0.45
8 15 0.18
9 7 0.08
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:90987993 original size:18 final size:18
Alignment explanation
Indices: 90987986--90988089 Score: 76
Period size: 18 Copynumber: 5.8 Consensus size: 18
90987976 TTTTATATTA
90987986 TATATTATATAATTATTTT
1 TATATTATAT-ATTATTTT
*
90988005 ATATATTACTCATATTATTTA
1 -TATATTA-T-ATATTATTTT
90988026 TATATTATATATTA--TT
1 TATATTATATATTATTTT
* * *
90988042 T-CA-CATATA-TACTTT
1 TATATTATATATTATTTT
*
90988057 TATATTATATATTATATT
1 TATATTATATATTATTTT
90988075 TAT-TTATATTATTAT
1 TATATTATA-TATTAT
90988090 GTCATTTTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
13 2 0.03
14 5 0.07
15 4 0.06
16 3 0.04
17 10 0.15
18 19 0.28
19 1 0.01
20 14 0.21
21 8 0.12
22 2 0.03
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (18 bp):
TATATTATATATTATTTT
Found at i:90988098 original size:40 final size:40
Alignment explanation
Indices: 90987976--90988100 Score: 136
Period size: 40 Copynumber: 3.2 Consensus size: 40
90987966 TTATTTTTAT
*
90987976 TTTTATATTATATATTATATAATTATTT-TATATATTACTCA
1 TTTTATATTATATATTATAT-ATTATTTATAT-TATTATTCA
* * *
90988017 TATTAT-TTATATATTATATATTATTTCACA-TA-TATAC-
1 TTTTATATTATATATTATATATTATTT-ATATTATTATTCA
90988054 TTTTATATTATATATTATAT-TTATTTATATTATTATGTCA
1 TTTTATATTATATATTATATATTATTTATATTATTAT-TCA
90988094 TTTTATA
1 TTTTATA
90988101 CTATTAAATA
Statistics
Matches: 70, Mismatches: 7, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
36 2 0.03
37 13 0.19
38 19 0.27
39 10 0.14
40 20 0.29
41 6 0.09
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (40 bp):
TTTTATATTATATATTATATATTATTTATATTATTATTCA
Found at i:90988437 original size:17 final size:17
Alignment explanation
Indices: 90988380--90988437 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
90988370 TTTAAACCAT
*
90988380 TATATTTTATATTTTTA
1 TATATTATATATTTTTA
*
90988397 TATAATTAT-TATTCTTA
1 TAT-ATTATATATTTTTA
90988414 TA-A--ATATATTTTTA
1 TATATTATATATTTTTA
90988428 TATATTATAT
1 TATATTATAT
90988438 CATTAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
13 2 0.06
14 9 0.27
15 2 0.06
17 16 0.48
18 4 0.12
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
TATATTATATATTTTTA
Found at i:90991552 original size:5 final size:5
Alignment explanation
Indices: 90991542--90991566 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
90991532 TTTTTAATTC
90991542 TATTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT
90991567 CCCAGGTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TATTT
Found at i:90993557 original size:14 final size:15
Alignment explanation
Indices: 90993540--90993573 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
90993530 ATTATTATAC
90993540 AAAATT-TATTTAAA
1 AAAATTATATTTAAA
*
90993554 AAAATTATTTTTAAA
1 AAAATTATATTTAAA
90993569 AAAAT
1 AAAAT
90993574 AATAGTGTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAATTATATTTAAA
Found at i:90993930 original size:15 final size:16
Alignment explanation
Indices: 90993910--90993942 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
90993900 TATATATTTT
90993910 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
90993925 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
90993942 T
1 T
90993943 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:90994052 original size:26 final size:24
Alignment explanation
Indices: 90994007--90994054 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
90993997 GTATTATTTT
*
90994007 TATTTGTTTTTATGTTTTTAAATA
1 TATTTGTTTTTATATTTTTAAATA
90994031 TATTTGATTTATTATATTTTTAAA
1 TATTTG-TTT-TTATATTTTTAAA
90994055 CTTTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (24 bp):
TATTTGTTTTTATATTTTTAAATA
Found at i:90994341 original size:31 final size:31
Alignment explanation
Indices: 90994276--90994347 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
90994266 TGCATATACG
* *
90994276 TTATATATATAATCAAGAACCACACATATATA
1 TTATATATATAA-CAAAAACCACACACATATA
*
90994308 TTATATATATAA-AAAAACCCACACACATGTA
1 TTATATATATAACAAAAA-CCACACACATATA
90994339 TTATATATA
1 TTATATATA
90994348 ATACAACCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 4 0.11
31 20 0.56
32 12 0.33
ACGTcount: A:0.50, C:0.15, G:0.03, T:0.32
Consensus pattern (31 bp):
TTATATATATAACAAAAACCACACACATATA
Found at i:90996773 original size:33 final size:31
Alignment explanation
Indices: 90996695--90996780 Score: 109
Period size: 31 Copynumber: 2.7 Consensus size: 31
90996685 AACCCTTCCT
* *
90996695 GCATTAAATCCAACCAAAAACAGCAAATATA
1 GCATAAAATACAACCAAAAACAGCAAATATA
* * *
90996726 GCATAAAATGCAACCAAAAACAGTAAATTTA
1 GCATAAAATACAACCAAAAACAGCAAATATA
90996757 GCATAAAAAATACAACCAAAAACA
1 GCAT--AAAATACAACCAAAAACA
90996781 TTAATTCTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 31 0.65
33 17 0.35
ACGTcount: A:0.58, C:0.20, G:0.07, T:0.15
Consensus pattern (31 bp):
GCATAAAATACAACCAAAAACAGCAAATATA
Found at i:90997039 original size:21 final size:21
Alignment explanation
Indices: 90997015--90997055 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
90997005 GTTGCCATCA
*
90997015 CTGCTGCCTCTGCCTCTCTCG
1 CTGCTGCCGCTGCCTCTCTCG
90997036 CTGCTGCCGCTGCCTCTCTC
1 CTGCTGCCGCTGCCTCTCTC
90997056 TGTTGCCTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.49, G:0.20, T:0.32
Consensus pattern (21 bp):
CTGCTGCCGCTGCCTCTCTCG
Found at i:90997500 original size:13 final size:14
Alignment explanation
Indices: 90997474--90997502 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
90997464 ACTAATGACG
90997474 AATTAAACCATTAT
1 AATTAAACCATTAT
90997488 AATTAAA-CATTAT
1 AATTAAACCATTAT
90997501 AA
1 AA
90997503 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:90997691 original size:17 final size:16
Alignment explanation
Indices: 90997669--90997707 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
90997659 AAAATATTAT
90997669 TTAATAGTAGAAAGTAA
1 TTAATAGTAGAAAG-AA
* *
90997686 TTAATATTTGAAAGAA
1 TTAATAGTAGAAAGAA
90997702 TTAATA
1 TTAATA
90997708 AATTCATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (16 bp):
TTAATAGTAGAAAGAA
Found at i:91011076 original size:24 final size:24
Alignment explanation
Indices: 91011044--91011093 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
91011034 CGAAGTTCAA
91011044 CTTTATAAACATTGTCTTAGTTCT
1 CTTTATAAACATTGTCTTAGTTCT
*
91011068 CTTTATAAATATTGTCTTAGTTCT
1 CTTTATAAACATTGTCTTAGTTCT
91011092 CT
1 CT
91011094 ATCTTCCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.52
Consensus pattern (24 bp):
CTTTATAAACATTGTCTTAGTTCT
Found at i:91015911 original size:47 final size:47
Alignment explanation
Indices: 91015827--91016375 Score: 920
Period size: 47 Copynumber: 11.6 Consensus size: 47
91015817 TATTTGAATA
91015827 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
91015876 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91015923 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
91015972 AATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91016018 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
91016065 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91016112 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
91016161 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91016208 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91016255 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
91016302 AATGTGAAAGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
91016349 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
91016376 TCCCGAAGGG
Statistics
Matches: 475, Mismatches: 20, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
46 46 0.10
47 326 0.69
49 103 0.22
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:91015939 original size:96 final size:94
Alignment explanation
Indices: 91015827--91016375 Score: 920
Period size: 96 Copynumber: 5.8 Consensus size: 94
91015817 TATTTGAATA
91015827 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
91015892 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCTAATAGCCGATGTGATG
91015923 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
91015988 TATGTGATAAGGCCTAAT-GCCGATGTGATG
64 TATGTGATAAGGCCTAATAGCCGATGTGATG
91016018 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
91016083 TGTGATAAGGCCTAATAGCCGATGTGATG
66 TGTGATAAGGCCTAATAGCCGATGTGATG
91016112 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
91016177 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATAGCCGATGTGATG
91016208 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
91016273 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATAGCCGATGTGATG
* * * * * * * * *
91016302 AATGTGAAAGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
91016367 TGTGATAAG
66 TGTGATAAG
91016376 TCCCGAAGGG
Statistics
Matches: 438, Mismatches: 12, Indels: 8
0.96 0.03 0.02
Matches are distributed among these distances:
93 69 0.16
94 170 0.39
95 23 0.05
96 176 0.40
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATAGCCGATGTGATG
Found at i:91016568 original size:36 final size:36
Alignment explanation
Indices: 91016493--91016593 Score: 166
Period size: 36 Copynumber: 2.8 Consensus size: 36
91016483 TCCGAGCTCA
91016493 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATT-TGTCCGGGT
91016530 AAGACCCGATGACTACGTGTGGAGATTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTGTCCGGGT
* * *
91016566 AAGACCCGATAACTTCATGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
91016594 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
36 34 0.56
37 27 0.44
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (36 bp):
AAGACCCGATGACTACGTGTGGAGATTTGTCCGGGT
Found at i:91018143 original size:40 final size:40
Alignment explanation
Indices: 91017882--91018131 Score: 369
Period size: 40 Copynumber: 6.2 Consensus size: 40
91017872 GGGCTAAATC
91017882 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
*
91017922 CCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
91017962 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
91018002 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* **
91018042 CCGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAA-AC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCG-GACTAAGTT
* * * * * * *
91018081 CTCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAGGTC
1 C-CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
91018122 CCGAAGAGCA
1 CCGAAGAGCA
91018132 ATCATGCTGG
Statistics
Matches: 196, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
39 2 0.01
40 191 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
Found at i:91022264 original size:47 final size:46
Alignment explanation
Indices: 91022171--91022712 Score: 870
Period size: 47 Copynumber: 11.5 Consensus size: 46
91022161 TATTTGAATA
91022171 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGA-AAGGCCTAATGGCCGATGTGATG
91022220 AATGTGAAAGTGTATTATAATGTG-AAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTA-TAT-ATGTGAAAGGCCTAATGGCCGATGTGATG
91022267 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGA-AAGGCCTAATGGCCGATGTGATG
91022316 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGA-AAGGCCTAATGGCCGATGTGATG
91022363 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGA-AAGGCCTAATGGCCGATGTGATG
91022410 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGA-AAGGCCTAATGGCCGATGTGATG
91022457 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGA-AAGGCCTAATGGCCGATGTGATG
*
91022504 AATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGAAAGGCCTAATGGCCGATGTGATG
91022550 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGA-AAGGCCTAATGGCCGATGTGATG
91022597 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGA-AAGGCCTAATGGCCGATGTGATG
* * * * * *
91022644 AATGTGAAAGTGTATATATGCGACAGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGAAAGGCCTAATGGCCGATGTGATG
* *
91022690 GATGTGAAAGTGTATAAATGTGA
1 AATGTGAAAGTGTATATATGTGA
91022713 TAAGTCCCGA
Statistics
Matches: 475, Mismatches: 11, Indels: 17
0.94 0.02 0.03
Matches are distributed among these distances:
46 83 0.17
47 332 0.70
48 6 0.01
49 54 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (46 bp):
AATGTGAAAGTGTATATATGTGAAAGGCCTAATGGCCGATGTGATG
Found at i:91022634 original size:140 final size:140
Alignment explanation
Indices: 91022171--91022716 Score: 950
Period size: 140 Copynumber: 3.9 Consensus size: 140
91022161 TATTTGAATA
91022171 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA-T
91022236 ATAATGTGA-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
63 AT-ATGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
91022300 AATGGCCGATGTGATG
125 AATGGCCGATGTGATG
91022316 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
91022381 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
91022446 CCGATGTGATG
130 CCGATGTGATG
91022457 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
91022522 TGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
66 TGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
91022587 CGATGTGATG
131 CGATGTGATG
91022597 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
91022662 TGCGACAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
91022717 TCCCGAAGGG
Statistics
Matches: 391, Mismatches: 8, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
140 181 0.46
141 112 0.29
142 3 0.01
143 83 0.21
145 12 0.03
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (140 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
CGATGTGATG
Found at i:91022880 original size:35 final size:36
Alignment explanation
Indices: 91022833--91022930 Score: 144
Period size: 36 Copynumber: 2.7 Consensus size: 36
91022823 CCGAGCTCTA
91022833 AAGACCCGATGACTACGTGTGGAGATTATGTCC-GGT
1 AAGA-CCGATGACTACGTGTGGAGATTATGTCCGGGT
*
91022869 AAGACCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCGATGACTACGTGTGGAGATTATGTCCGGGT
* * *
91022905 AAGACCGATAACTTCATGTGGAGATT
1 AAGACCGATGACTACGTGTGGAGATT
91022931 CGTCTGAGCT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
35 27 0.47
36 30 0.53
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (36 bp):
AAGACCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:91026549 original size:47 final size:47
Alignment explanation
Indices: 91026470--91027018 Score: 938
Period size: 47 Copynumber: 11.6 Consensus size: 47
91026460 TATTTGAATA
91026470 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
91026519 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91026565 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
91026614 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91026661 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
91026708 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91026755 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
91026804 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91026851 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
91026898 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
91026945 AATGTGAAAGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
91026992 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
91027019 TCCCGAAGGG
Statistics
Matches: 479, Mismatches: 16, Indels: 12
0.94 0.03 0.02
Matches are distributed among these distances:
46 20 0.04
47 355 0.74
48 26 0.05
49 78 0.16
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:91026815 original size:190 final size:190
Alignment explanation
Indices: 91026470--91027018 Score: 960
Period size: 190 Copynumber: 2.9 Consensus size: 190
91026460 TATTTGAATA
91026470 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
91026535 TATGTGATAAGGCCTAATGGCC-ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
91026599 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
129 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
91026661 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
91026726 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
*
91026791 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
91026851 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * *
91026916 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGCGACAGGGCCGAGT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
* * * *
91026979 GGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
91027019 TCCCGAAGGG
Statistics
Matches: 345, Mismatches: 12, Indels: 5
0.95 0.03 0.01
Matches are distributed among these distances:
188 53 0.15
189 72 0.21
190 208 0.60
191 12 0.03
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (190 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
Found at i:91027233 original size:35 final size:37
Alignment explanation
Indices: 91027137--91027235 Score: 141
Period size: 36 Copynumber: 2.8 Consensus size: 37
91027127 CCGAGCTCTA
*
91027137 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
91027174 AAGA-CCGATGACTACGTGTGGAGATTTTGTCC-GGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
91027209 AAGACCCGATAACTTCATGT-GAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
91027236 CGTCTGAGCT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
35 14 0.25
36 39 0.68
37 4 0.07
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:91032218 original size:27 final size:27
Alignment explanation
Indices: 91032188--91032255 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
91032178 ACAAATCTGT
91032188 CATTTTACCTTATAGGGGTATTAAAGC
1 CATTTTACCTTATAGGGGTATTAAAGC
* * *** *
91032215 CATTTTACCCTATGGGGGTATTTTGGT
1 CATTTTACCTTATAGGGGTATTAAAGC
91032242 CATTTTACCTTATA
1 CATTTTACCTTATA
91032256 AGGCAAAACA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.43
Consensus pattern (27 bp):
CATTTTACCTTATAGGGGTATTAAAGC
Found at i:91035723 original size:28 final size:28
Alignment explanation
Indices: 91035691--91035788 Score: 115
Period size: 28 Copynumber: 3.5 Consensus size: 28
91035681 GCAATCAAAT
* * *
91035691 ATGGCACTAAGGGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAGATATTGAGA
**
91035719 ATGGCACTTAGTGCGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAGATATTGAGA
* *
91035747 ATGACACTTAGTGTATGAGATATTGAGA
1 ATGGCACTTAGTGTACGAGATATTGAGA
* *
91035775 ATGACACATAGTGT
1 ATGGCACTTAGTGT
91035789 GCAAAATATC
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.27
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAGATATTGAGA
Found at i:91038730 original size:25 final size:26
Alignment explanation
Indices: 91038702--91038818 Score: 82
Period size: 27 Copynumber: 4.4 Consensus size: 26
91038692 TTATAAATTT
91038702 TATTATATGTTATAT-TTTTATTATA
1 TATTATATGTTATATATTTTATTATA
91038727 TATTATTTAT-TCTATTATATTTATATT-T-
1 TATTA--TATGT-TA-TATATTT-TATTATA
*
91038755 TATTATATGTTATATAATTTTTTTACTA
1 TATTATATGTTATAT-ATTTTATTA-TA
* * *
91038783 TA-TATATATTATTTATTTTACTATA
1 TATTATATGTTATATATTTTATTATA
*
91038808 TTTTTATATGT
1 -TATTATATGT
91038819 AAAATTACTT
Statistics
Matches: 72, Mismatches: 7, Indels: 24
0.70 0.07 0.23
Matches are distributed among these distances:
25 13 0.18
26 18 0.25
27 23 0.32
28 10 0.14
29 4 0.06
30 4 0.06
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (26 bp):
TATTATATGTTATATATTTTATTATA
Found at i:91038766 original size:53 final size:52
Alignment explanation
Indices: 91038698--91038896 Score: 151
Period size: 53 Copynumber: 3.8 Consensus size: 52
91038688 ATATTTATAA
*
91038698 ATTTTATTATATGTTATATTTTTATTATATATTATTTATTCTATTATATTTAT
1 ATTTTATTATATGTTATATTTTTATTATATATTATTTATTAT-TTATATTTAT
* *
91038751 ATTTTATTATATGTTATATAATTTTTTTACTATA-TATATATTATTTAT-TTTACT
1 ATTTTATTATATGTTATAT--TTTTATTA-TATATTATTTATTATTTATATTTA-T
* * * *
91038805 ATATTT-TTATATGTAAAATTACTTGTTATATTATT-TTTATTATTTTATATTT-T
1 AT-TTTATTATATGTTATATT-TTTATTATA-TATTATTTATTA-TTTATATTTAT
* * * *
91038858 A-CTTATCATATTGTTCATATTTTTA-TATATTTTGTTTAT
1 ATTTTATTATA-TGTT-ATATTTTTATTATATATTATTTAT
91038897 AAATTTTATT
Statistics
Matches: 117, Mismatches: 15, Indels: 29
0.73 0.09 0.18
Matches are distributed among these distances:
51 5 0.04
52 16 0.14
53 43 0.37
54 28 0.24
55 21 0.18
56 4 0.03
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.64
Consensus pattern (52 bp):
ATTTTATTATATGTTATATTTTTATTATATATTATTTATTATTTATATTTAT
Found at i:91038778 original size:23 final size:23
Alignment explanation
Indices: 91038750--91038808 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
91038740 ATTATATTTA
* *
91038750 TATTTTATTATATGTTATATAATT
1 TATTTTACTATAT-ATATATAATT
*
91038774 T-TTTTACTATATATATATTATT
1 TATTTTACTATATATATATAATT
91038796 TATTTTACTATAT
1 TATTTTACTATAT
91038809 TTTTATATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.29
23 21 0.68
24 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (23 bp):
TATTTTACTATATATATATAATT
Found at i:91038863 original size:16 final size:14
Alignment explanation
Indices: 91038714--91038863 Score: 54
Period size: 16 Copynumber: 9.9 Consensus size: 14
91038704 TTATATGTTA
91038714 TATTTTTATTATA-
1 TATTTTTATTATAT
*
91038727 TATTATTTATTCTAT
1 TATT-TTTATTATAT
*
91038742 TATATTTATATTTTAT
1 TAT-TTT-TATTATAT
*
91038758 TATATGTTA-TATAAT
1 TAT-TTTTATTAT-AT
91038773 T-TTTTTACTATATAT
1 TATTTTTA-T-TATAT
*
91038788 ATATTATTTATTTTACT
1 -TATT-TTTATTATA-T
* *
91038805 ATATTTTTATATGTAA
1 -TATTTTTAT-TATAT
* * *
91038821 AATTACTTGTTATAT
1 TATT-TTTATTATAT
*
91038836 TATTTTTATTATTT
1 TATTTTTATTATAT
91038850 TATATTTTACTTAT
1 TAT-TTTTA-TTAT
91038864 CATATTGTTC
Statistics
Matches: 104, Mismatches: 17, Indels: 29
0.69 0.11 0.19
Matches are distributed among these distances:
13 8 0.08
14 21 0.20
15 26 0.25
16 33 0.32
17 12 0.12
18 4 0.04
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (14 bp):
TATTTTTATTATAT
Found at i:91052570 original size:44 final size:44
Alignment explanation
Indices: 91052520--91052832 Score: 500
Period size: 44 Copynumber: 7.1 Consensus size: 44
91052510 TCACCGGTGA
91052520 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
91052564 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
* * *
91052608 CAGATTTGGCATTTCTATATTGTCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
* *
91052652 CAGATTTGGCGTCTCTGTATTGTCAAAGAGCAGATCAAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
*
91052696 CAGATTTGGCGTCTCTGTATTGTCAGAGAACAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
* ** *
91052740 CGGATTTGGCGTCTCTGTATTGTTTGAGAGTAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
* * * *
91052784 CAGATTTGGCATCTCTGTATTGTTAGAGAGCAGATCAAAGATAA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
91052828 CAGAT
1 CAGAT
91052833 CTAGCGTTCC
Statistics
Matches: 247, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 247 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
Found at i:91052879 original size:132 final size:132
Alignment explanation
Indices: 91052520--91052879 Score: 471
Period size: 132 Copynumber: 2.7 Consensus size: 132
91052510 TCACCGGTGA
*
91052520 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATT
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATT
*
91052585 GTC-AGAGAGCAGATCGAAGATAG-CAGATTTGGCATTTCTATATTGTCAGAGAGCAGATCGAAG
66 GTCAAGA-AGCAGATCGAAGATAGCCA-ATTTGGCATCTCTATATTGTCAGAGAGCAGATCGAAG
91052648 ATAG
129 ATAG
*
91052652 CAGATTTGGCGTCTCTGTATTGTCAAAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATT
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATT
** * * ** *
91052717 GTCAGAGAA-CAGATCGAAGATAGCGGATTTGGCGTCTCTGTATTGTTTGAGAGTAGATCGAAGA
66 GTCA-AGAAGCAGATCGAAGATAGCCAATTTGGCATCTCTATATTGTCAGAGAGCAGATCGAAGA
91052781 TAG
130 TAG
* * * * *
91052784 CAGATTTGGCATCTCTGTATTGTTAGAGAGCAGATCAAAGATAACAGATCTAGCGT-TCCTG-AG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCT-CTGTA-
* *
91052847 TT-TGCAAGAAGCAGGTTGAAGATAGCCAATTTG
64 TTGT-CAAGAAGCAGATCGAAGATAGCCAATTTG
91052880 ACATTCCTGA
Statistics
Matches: 201, Mismatches: 20, Indels: 14
0.86 0.09 0.06
Matches are distributed among these distances:
131 7 0.03
132 190 0.95
133 1 0.00
134 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (132 bp):
CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATT
GTCAAGAAGCAGATCGAAGATAGCCAATTTGGCATCTCTATATTGTCAGAGAGCAGATCGAAGAT
AG
Found at i:91054445 original size:27 final size:27
Alignment explanation
Indices: 91054415--91054488 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 27
91054405 TATATGAAAA
91054415 ATAATATATATTATTATATTCATCTTT
1 ATAATATATATTATTATATTCATCTTT
* *
91054442 ATAA-AT-T-TTATTATATGGTGTATTTTT
1 ATAATATATATTATTATAT--T-CATCTTT
*
91054469 ATTATATATATTATT-TATTC
1 ATAATATATATTATTATATTC
91054489 TATTATATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 13
0.69 0.07 0.24
Matches are distributed among these distances:
24 9 0.24
25 1 0.03
26 3 0.08
27 13 0.35
28 2 0.05
29 4 0.11
30 5 0.14
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (27 bp):
ATAATATATATTATTATATTCATCTTT
Found at i:91054550 original size:21 final size:21
Alignment explanation
Indices: 91054465--91054555 Score: 77
Period size: 21 Copynumber: 4.5 Consensus size: 21
91054455 TATGGTGTAT
*
91054465 TTTTATTATATATATTATTTA
1 TTTTACTATATATATTATTTA
*
91054486 --TT-CTAT-TATATT-TATA
1 TTTTACTATATATATTATTTA
* * *
91054502 TTTTATTATATGTTATATAATT-
1 TTTTACTATAT-ATAT-TATTTA
91054524 TTTTACTATATATATTATTTA
1 TTTTACTATATATATTATTTA
91054545 TTTTACTATAT
1 TTTTACTATAT
91054556 TTTTATATGT
Statistics
Matches: 53, Mismatches: 9, Indels: 16
0.68 0.12 0.21
Matches are distributed among these distances:
16 3 0.06
17 6 0.11
18 5 0.09
19 5 0.09
20 5 0.09
21 17 0.32
22 11 0.21
23 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (21 bp):
TTTTACTATATATATTATTTA
Found at i:91054604 original size:12 final size:10
Alignment explanation
Indices: 91054462--91054669 Score: 50
Period size: 9 Copynumber: 20.6 Consensus size: 10
91054452 TTATATGGTG
91054462 TATTTT-TAT
1 TATTTTATAT
*
91054471 TA-TATATAT
1 TATTTTATAT
*
91054480 TATTTATTCTAT
1 TA-TT-TTATAT
91054492 TATATTTATAT
1 TAT-TTTATAT
91054503 T-TTATTATA-
1 TATT-TTATAT
* *
91054512 TGTTATATAAT
1 TATTTTAT-AT
91054523 T-TTTTACTAT
1 TATTTTA-TAT
*
91054533 ATATATTAT-T
1 -TATTTTATAT
91054543 TATTTTACTA-
1 TATTTTA-TAT
91054553 TATTTT-TA-
1 TATTTTATAT
* * *
91054561 TATGTAAAAT
1 TATTTTATAT
91054571 TACTTGTTATAT
1 TA-TT-TTATAT
91054583 TATTTT-TAT
1 TATTTTATAT
91054592 TATTTTATA-
1 TATTTTATAT
91054601 TATTACTTATCA-
1 TATT--TTAT-AT
91054613 TATTGTTCATAT
1 TATT-TT-ATAT
*
91054625 TATTATATAT
1 TATTTTATAT
*
91054635 TTTGTTTATA-
1 TAT-TTTATAT
*
91054645 AATTTTAT-T
1 TATTTTATAT
*
91054654 ATATGTTATA-
1 -TATTTTATAT
91054664 TATTTT
1 TATTTT
91054670 TCCACATATT
Statistics
Matches: 148, Mismatches: 23, Indels: 56
0.65 0.10 0.25
Matches are distributed among these distances:
8 8 0.05
9 42 0.28
10 42 0.28
11 28 0.19
12 28 0.19
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (10 bp):
TATTTTATAT
Found at i:91054616 original size:33 final size:33
Alignment explanation
Indices: 91054569--91054634 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
91054559 TATATGTAAA
* * ** *
91054569 ATTACTTGTTATATTATTTTTATTATTTTATAT
1 ATTACTTATCATATTATTCATATTATTATATAT
*
91054602 ATTACTTATCATATTGTTCATATTATTATATAT
1 ATTACTTATCATATTATTCATATTATTATATAT
91054635 TTTGTTTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (33 bp):
ATTACTTATCATATTATTCATATTATTATATAT
Found at i:91061172 original size:28 final size:28
Alignment explanation
Indices: 91061126--91061198 Score: 119
Period size: 28 Copynumber: 2.6 Consensus size: 28
91061116 TCAAATATGG
*
91061126 CACTCAGTGTACGAAATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
* *
91061154 CACTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
91061182 CACTTAGTGTACGAAAT
1 CACTTAGTGTACGAAAT
91061199 TTCAAATGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (28 bp):
CACTTAGTGTACGAAATATTGAGAATGA
Found at i:91077804 original size:33 final size:34
Alignment explanation
Indices: 91077728--91077818 Score: 107
Period size: 33 Copynumber: 2.7 Consensus size: 34
91077718 AACACAGTTA
*
91077728 GGCCCTAGCCCATTTCAGAATCAGAAATAGTGTG
1 GGCCCAAGCCCATTTCAGAATCAGAAATAGTGTG
* *
91077762 GGCCTAAGCCCATTTCAGTAA-CA-ATATCAGTG-G
1 GGCCCAAGCCCATTTCAG-AATCAGAAAT-AGTGTG
*
91077795 GGCCCAAGCCCATTACAGAATCAG
1 GGCCCAAGCCCATTTCAGAATCAG
91077819 TACAGTGCGC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
32 2 0.04
33 22 0.46
34 22 0.46
35 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (34 bp):
GGCCCAAGCCCATTTCAGAATCAGAAATAGTGTG
Found at i:91078186 original size:27 final size:27
Alignment explanation
Indices: 91078156--91078343 Score: 209
Period size: 27 Copynumber: 7.0 Consensus size: 27
91078146 GTAGGAAAAT
91078156 CAGTCATTTTA-CCTCACAGGGGTATTA
1 CAGTCATTTTACCCT-ACAGGGGTATTA
*
91078183 CAGTCATTTTACCCTAAAGGGGTATTA
1 CAGTCATTTTACCCTACAGGGGTATTA
* * * *
91078210 TAGTCATGTTACCCTACAGGGCTTTTA
1 CAGTCATTTTACCCTACAGGGGTATTA
* *
91078237 TAGTCATTTTACCCTACAGGGGTGTTA
1 CAGTCATTTTACCCTACAGGGGTATTA
* * * *
91078264 CAGTCATTTTACCTTATAAGGGTATTT
1 CAGTCATTTTACCCTACAGGGGTATTA
* *
91078291 CAGTCATTTTAACCTAC-GAGGGTATTT
1 CAGTCATTTTACCCTACAG-GGGTATTA
* *
91078318 CAATCATTTTACCCTATAGGGGTATT
1 CAGTCATTTTACCCTACAGGGGTATT
91078344 TTGGATATTA
Statistics
Matches: 136, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 132 0.97
28 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
CAGTCATTTTACCCTACAGGGGTATTA
Found at i:91078296 original size:81 final size:82
Alignment explanation
Indices: 91078157--91078343 Score: 235
Period size: 81 Copynumber: 2.3 Consensus size: 82
91078147 TAGGAAAATC
91078157 AGTCATTTTA-CCTCACAGGGGTATTACAGTCATTTTACCCTAAAGGGGTATTATAGTCATGTTA
1 AGTCATTTTACCCT-ACAGGGGTATTACAGTCATTTTACCCTAAAGGGGTATTATAGTCATGTTA
*
91078221 CCCTAC-AGGGCT-TTT-A
65 ACCTACGAGGG-TATTTCA
* * *
91078237 TAGTCATTTTACCCTACAGGGGTGTTACAGTCATTTTACCTTATAA-GGGTATT-TCAGTCATTT
1 -AGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTA-AAGGGGTATTAT-AGTCATGT
91078300 TAACCTACGAGGGTATTTCA
63 TAACCTACGAGGGTATTTCA
*
91078320 A-TCATTTTACCCTATAGGGGTATT
1 AGTCATTTTACCCTACAGGGGTATT
91078344 TTGGATATTA
Statistics
Matches: 94, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
80 1 0.01
81 79 0.84
82 13 0.14
83 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (82 bp):
AGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTAAAGGGGTATTATAGTCATGTTAA
CCTACGAGGGTATTTCA
Found at i:91081745 original size:13 final size:14
Alignment explanation
Indices: 91081727--91081756 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
91081717 GCTCTAATGA
91081727 TTTGAACTGAA-CT
1 TTTGAACTGAATCT
91081740 TTTGAACTGAATCT
1 TTTGAACTGAATCT
91081754 TTT
1 TTT
91081757 TGAGTTAGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47
Consensus pattern (14 bp):
TTTGAACTGAATCT
Found at i:91083078 original size:21 final size:21
Alignment explanation
Indices: 91083041--91083088 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
91083031 AAATATGGTA
*
91083041 AAATAATTAGTATTAAAAAAT
1 AAATAATTAGTAATAAAAAAT
*
91083062 AAATAATATA-TAATAAAATAT
1 AAATAAT-TAGTAATAAAAAAT
*
91083083 ATATAA
1 AAATAA
91083089 GAAAGATTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
AAATAATTAGTAATAAAAAAT
Found at i:91083145 original size:17 final size:17
Alignment explanation
Indices: 91083118--91083168 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
91083108 GAATATTAAA
91083118 TAATAAAAATATAGTATG
1 TAAT-AAAATATAGTATG
91083136 TAATAAAATATAGTATG
1 TAATAAAATATAGTATG
* * *
91083153 AAATATAATATGGTAT
1 TAATAAAATATAGTAT
91083169 ATGTATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 26 0.87
18 4 0.13
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (17 bp):
TAATAAAATATAGTATG
Found at i:91083529 original size:14 final size:14
Alignment explanation
Indices: 91083499--91083573 Score: 64
Period size: 14 Copynumber: 5.3 Consensus size: 14
91083489 ACAATTTTAA
91083499 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
91083511 GAAATATATAAAAT
1 AAAATATATAAAAT
*
91083525 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
91083539 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
91083555 AAAATATATAATAAT
1 AAAATATATAA-AAT
91083570 AAAA
1 AAAA
91083574 AATAATGGAT
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
12 8 0.16
13 3 0.06
14 17 0.35
15 14 0.29
16 7 0.14
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:91083542 original size:26 final size:30
Alignment explanation
Indices: 91083499--91083567 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 30
91083489 ACAATTTTAA
91083499 AAAATATATAA-AGAAATAT-A-TA-AAAT
1 AAAATATATAATAGAAATATAATTATAAAT
* *
91083525 AAAATATATAATA-TAATATAATTTATAGAT
1 AAAATATATAATAGAAATATAA-TTATAAAT
91083555 AAAATATATAATA
1 AAAATATATAATA
91083568 ATAAAAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
26 16 0.44
27 2 0.06
29 2 0.06
30 16 0.44
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (30 bp):
AAAATATATAATAGAAATATAATTATAAAT
Found at i:91083568 original size:12 final size:12
Alignment explanation
Indices: 91083479--91083568 Score: 53
Period size: 12 Copynumber: 7.1 Consensus size: 12
91083469 CAAATTTAGT
91083479 AAATA-ATAATA
1 AAATATATAATA
* *
91083490 CAAT-TTTAA-A
1 AAATATATAATA
91083500 AAATATATAA-A
1 AAATATATAATA
91083511 GAAATATATAAAATA
1 -AAATATAT--AATA
91083526 AAATATATAATA
1 AAATATATAATA
91083538 TAATATAATTTATAGATA
1 -AA-AT-A--TATA-ATA
91083556 AAATATATAATA
1 AAATATATAATA
91083568 A
1 A
91083569 TAAAAAATAA
Statistics
Matches: 63, Mismatches: 4, Indels: 23
0.70 0.04 0.26
Matches are distributed among these distances:
10 4 0.06
11 11 0.17
12 16 0.25
13 6 0.10
14 12 0.19
15 3 0.05
16 2 0.03
17 6 0.10
18 3 0.05
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.33
Consensus pattern (12 bp):
AAATATATAATA
Found at i:91085601 original size:206 final size:206
Alignment explanation
Indices: 91085233--91085981 Score: 1151
Period size: 206 Copynumber: 3.6 Consensus size: 206
91085223 TCGATTTGTC
* * *
91085233 CTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGAAAGTACGCGAAAGCCAAA
1 CTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGAAAGCCAAA
* * * * *
91085298 TGAGCTATGTCTTCGATTTGCTCCTTGTAAGCACGAGGATACCAAACCATCTTGGATCTGCTTCT
66 TCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCA
* * ** * * * *
91085363 GTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTTCCCTCCATCAAATATGGAGACGCCAAAC
131 GTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAAC
91085428 TTTGATTTATT
196 TTTGATTTATT
* * * *
91085439 CTCTGAAAATACAGAGATGTCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGTGAAAGCTAAA
1 CTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGAAAGCCAAA
* * *
91085504 TCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATTTTGGATCTGCTTC
66 TCAGCTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTC
*
91085568 AGTATAAACATCTGAAGGCCAGATCTTCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAA
130 AGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAA
*
91085633 CTTCGATTTATT
195 CTTTGATTTATT
* *
91085645 CTCTGACAATACAGAGATGCCAAATCATCTTATATTTGCTTCATCGTAA-CACGTGAAAGCCAAA
1 CTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGAAAGCCAAA
* *
91085709 TCAGCTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTGCTTCA
66 TCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCA
* *
91085774 GTATAAACATCTGAAGGCCAAATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGATGCCAAAC
131 GTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAAC
* *
91085839 TTTGGTTTGTT
196 TTTGATTTATT
*
91085850 CTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAA
1 CTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGAAAGCCAAA
*
91085915 TCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGTATGCCAAACCATCTTGGATCTTGCTTC
66 TCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC-TGCTTC
91085980 AG
130 AG
91085982 CCAGATCTGC
Statistics
Matches: 495, Mismatches: 44, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
204 1 0.00
205 192 0.39
206 293 0.59
207 9 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
CTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGAAAGCCAAA
TCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCA
GTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAAC
TTTGATTTATT
Found at i:91097211 original size:40 final size:39
Alignment explanation
Indices: 91097137--91097361 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 39
91097127 AACCCAAGTA
* * *
91097137 CCTTCAGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
*
91097176 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
*
91097216 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTA---GCACAAATG
* *
91097259 CCTTCGGGACTTCGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* * * *
91097299 CCTTCGGTACTTAGCCCAGATATAGGAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
**
91097339 CCTTCGAAACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
91097362 CATCCGAATA
Statistics
Matches: 162, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
39 12 0.07
40 112 0.69
41 2 0.01
43 35 0.22
44 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:91097257 original size:83 final size:83
Alignment explanation
Indices: 91097163--91097361 Score: 296
Period size: 83 Copynumber: 2.4 Consensus size: 83
91097153 GGATATAGCA
*
91097163 ACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
* *
91097228 AGCCCGGGTATAGCAACT
66 AGCCCAGATATAGCAACT
* * *
91097246 ACTCGCACAAATGCCTTCGGGACTTCGCCCAGATATAGTCACTAGCACAAATGCCTTCGGTACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
*
91097311 AGCCCAGATATAGGAACT
66 AGCCCAGATATAGCAACT
**
91097329 --T-GCACAAATGCCTTCGAAACTTAGCCCGGATAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
91097362 CATCCGAATA
Statistics
Matches: 105, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
80 28 0.27
81 1 0.01
83 76 0.72
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (83 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
AGCCCAGATATAGCAACT
Found at i:91105359 original size:40 final size:40
Alignment explanation
Indices: 91105285--91105429 Score: 195
Period size: 40 Copynumber: 3.6 Consensus size: 40
91105275 AACCCAAGTA
* * *
91105285 CCTTTGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
91105324 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
*
91105364 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
91105407 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
91105430 CATCCGAATA
Statistics
Matches: 93, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
39 12 0.13
40 49 0.53
41 1 0.01
43 31 0.33
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:91109273 original size:5 final size:5
Alignment explanation
Indices: 91109263--91109319 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
91109253 GTTATGTATA
* * * *
91109263 ATAAT ATAAT ATGAAT AAAAT ATAAGG A-AAT ATAAT ATAAA ATAAT AAAAT
1 ATAAT ATAAT AT-AAT ATAAT ATAA-T ATAAT ATAAT ATAAT ATAAT ATAAT
91109314 ATAAT A
1 ATAAT A
91109320 AGTATCTTGC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
4 1 0.02
5 35 0.85
6 5 0.12
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (5 bp):
ATAAT
Found at i:91109307 original size:10 final size:10
Alignment explanation
Indices: 91109263--91109320 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
91109253 GTTATGTATA
*
91109263 ATAATATAAT
1 ATAATAAAAT
91109273 ATGAATAAAAT
1 AT-AATAAAAT
**
91109284 ATAAGGAAAT
1 ATAATAAAAT
91109294 ATAATATAAA-
1 ATAATA-AAAT
91109304 ATAATAAAAT
1 ATAATAAAAT
91109314 ATAATAA
1 ATAATAA
91109321 GTATCTTGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 3 0.08
10 25 0.62
11 12 0.30
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (10 bp):
ATAATAAAAT
Found at i:91109445 original size:18 final size:18
Alignment explanation
Indices: 91109422--91109462 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
91109412 GAATATTGAA
91109422 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
91109440 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
*
91109458 AAATA
1 TAATA
91109463 TAATATGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (18 bp):
TAATAAAAATATAGTATG
Found at i:91109834 original size:26 final size:30
Alignment explanation
Indices: 91109805--91109873 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
91109795 ACAATTTTAA
91109805 AAAATATATAA-ATAA-AT-ATATA-AAAT
1 AAAATATATAATATAATATAATATATAAAT
* *
91109831 AAAATATATAATATAATATAATTTATAGAT
1 AAAATATATAATATAATATAATATATAAAT
91109861 AAAATATATAATA
1 AAAATATATAATA
91109874 ATAAAAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 11 0.30
27 4 0.11
28 2 0.05
29 4 0.11
30 16 0.43
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (30 bp):
AAAATATATAATATAATATAATATATAAAT
Found at i:91109835 original size:14 final size:14
Alignment explanation
Indices: 91109805--91109879 Score: 73
Period size: 14 Copynumber: 5.3 Consensus size: 14
91109795 ACAATTTTAA
91109805 AAAATATAT-AAAT
1 AAAATATATAAAAT
91109818 -AAATATATAAAAT
1 AAAATATATAAAAT
*
91109831 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
91109845 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
91109861 AAAATATATAATAAT
1 AAAATATATAA-AAT
91109876 AAAA
1 AAAA
91109880 AATAATGGAT
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
12 8 0.16
13 4 0.08
14 17 0.34
15 14 0.28
16 7 0.14
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:91109845 original size:7 final size:7
Alignment explanation
Indices: 91109807--91109907 Score: 50
Period size: 7 Copynumber: 14.3 Consensus size: 7
91109797 AATTTTAAAA
91109807 AATATAT
1 AATATAT
91109814 AA-ATA-
1 AATATAT
91109819 AATATAT
1 AATATAT
* *
91109826 AAAATAA
1 AATATAT
91109833 AATATAT
1 AATATAT
91109840 AATATAATAT
1 -A-AT-ATAT
*
91109850 AATTTAT
1 AATATAT
91109857 AGATA-A-
1 A-ATATAT
91109863 AATATAT
1 AATATAT
91109870 AATA-AT
1 AATATAT
* *
91109876 AAAAAAT
1 AATATAT
**
91109883 AATGGAT
1 AATATAT
91109890 AATAATAGT
1 AAT-ATA-T
91109899 AATATAT
1 AATATAT
91109906 AA
1 AA
91109908 CTAATATTTA
Statistics
Matches: 71, Mismatches: 12, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
5 5 0.07
6 13 0.18
7 33 0.46
8 9 0.13
9 7 0.10
10 4 0.06
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (7 bp):
AATATAT
Found at i:91109848 original size:56 final size:53
Alignment explanation
Indices: 91109787--91109930 Score: 127
Period size: 56 Copynumber: 2.6 Consensus size: 53
91109777 AATTTAGTAA
91109787 ATAATAATACAATTTTAAAAAATATATAAATAAATATATAAAATAA-AATATATAAT
1 ATAATAATACAATTTTAAAAAATATATAAAT-AATA-A-AAAATAAGAATA-ATAAT
*
91109843 ATAAT-AT--AATTTATAGATAAAATATAT-AATAATAAAAAATAATGGATAATAAT
1 ATAATAATACAATTT-TA-A-AAAATATATAAATAATAAAAAATAA-GAATAATAAT
91109896 AGTAATATATAACTAATATTTAAAAAATATATAAA
1 A-TAATA-AT-AC-AAT-TTTAAAAAATATATAAA
91109931 GTGTTTAAAG
Statistics
Matches: 73, Mismatches: 1, Indels: 25
0.74 0.01 0.25
Matches are distributed among these distances:
52 7 0.10
53 12 0.16
54 13 0.18
55 6 0.08
56 16 0.22
58 9 0.12
59 3 0.04
60 5 0.07
61 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (53 bp):
ATAATAATACAATTTTAAAAAATATATAAATAATAAAAAATAAGAATAATAAT
Found at i:91109864 original size:30 final size:29
Alignment explanation
Indices: 91109790--91109873 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 29
91109780 TTAGTAAATA
*
91109790 ATAATACAATTT-TAA-AAAATATATAA-
1 ATAATATAATTTATAATAAAATATATAAT
* *
91109816 ATAA-AT-ATATAAAATAAAATATATAAT
1 ATAATATAATTTATAATAAAATATATAAT
91109843 ATAATATAATTTATAGATAAAATATATAAT
1 ATAATATAATTTATA-ATAAAATATATAAT
91109873 A
1 A
91109874 ATAAAAAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
24 3 0.06
25 3 0.06
26 15 0.32
27 4 0.09
28 2 0.04
29 5 0.11
30 15 0.32
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (29 bp):
ATAATATAATTTATAATAAAATATATAAT
Found at i:91109874 original size:12 final size:12
Alignment explanation
Indices: 91109785--91109874 Score: 60
Period size: 12 Copynumber: 7.1 Consensus size: 12
91109775 CAAATTTAGT
91109785 AAATA-ATAATA
1 AAATATATAATA
* *
91109796 CAAT-TTTAA-A
1 AAATATATAATA
91109806 AAATATATAAATA
1 AAATATAT-AATA
*
91109819 AATATATAAAATA
1 AA-ATATATAATA
91109832 AAATATATAATA
1 AAATATATAATA
91109844 TAATATAATTTATAGATA
1 -AA-AT-A--TATA-ATA
91109862 AAATATATAATA
1 AAATATATAATA
91109874 A
1 A
91109875 TAAAAAATAA
Statistics
Matches: 62, Mismatches: 6, Indels: 21
0.70 0.07 0.24
Matches are distributed among these distances:
10 4 0.06
11 8 0.13
12 15 0.24
13 15 0.24
14 7 0.11
15 2 0.03
16 2 0.03
17 6 0.10
18 3 0.05
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (12 bp):
AAATATATAATA
Found at i:91109914 original size:11 final size:11
Alignment explanation
Indices: 91109802--91109930 Score: 68
Period size: 11 Copynumber: 11.4 Consensus size: 11
91109792 AATACAATTT
*
91109802 TAAAAAATATA
1 TAAATAATATA
91109813 TAAATAAATATA
1 TAAAT-AATATA
91109825 TAAAATAA-A-A
1 T-AAATAATATA
*
91109835 TATATAATATA
1 TAAATAATATA
* *
91109846 -ATATAATTTA
1 TAAATAATATA
* *
91109856 TAGATAAAATA
1 TAAATAATATA
91109867 TATAATAATA-A
1 TA-AATAATATA
*
91109878 AAAATAATGGATAA
1 TAAATAAT--AT-A
91109892 TAATAGTAATATA
1 TAA-A-TAATATA
* *
91109905 TAACTAATATT
1 TAAATAATATA
*
91109916 TAAAAAATATA
1 TAAATAATATA
91109927 TAAA
1 TAAA
91109931 GTGTTTAAAG
Statistics
Matches: 91, Mismatches: 15, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
9 5 0.05
10 18 0.20
11 35 0.38
12 15 0.16
13 8 0.09
14 5 0.05
15 1 0.01
16 4 0.04
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (11 bp):
TAAATAATATA
Found at i:91115878 original size:27 final size:27
Alignment explanation
Indices: 91115837--91115890 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
91115827 TGTCATGTGA
* *
91115837 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
91115864 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
91115891 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:91116381 original size:49 final size:50
Alignment explanation
Indices: 91116136--91116382 Score: 275
Period size: 49 Copynumber: 5.0 Consensus size: 50
91116126 ATCTATTGTA
* *
91116136 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAG-ATAATT
* * *
91116186 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * * * **
91116236 CGATCACGTGTGTAGTACTAAGTCCAGGCTTCTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
91116286 AGGTCACGTGTGTAGTACTAGGTGCAGGCTACTACGTGTACTAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* **
91116336 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA
91116383 CCTTGTCTAC
Statistics
Matches: 163, Mismatches: 31, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
49 81 0.50
50 45 0.28
51 37 0.23
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:91118903 original size:40 final size:40
Alignment explanation
Indices: 91118859--91118934 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
91118849 TTAGTGCCAC
*
91118859 ATATAGCCAAAGCTAT-TCCAATTCGCACACTAAGTGTTTT
1 ATATAGCCAAAGCTATCTCCAA-TCACACACTAAGTGTTTT
** *
91118899 ATATAGCTGAAGCTATCTCGAATCACACACTAAGTG
1 ATATAGCCAAAGCTATCTCCAATCACACACTAAGTG
91118935 CCAAACATAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 27 0.87
41 4 0.13
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.29
Consensus pattern (40 bp):
ATATAGCCAAAGCTATCTCCAATCACACACTAAGTGTTTT
Found at i:91122417 original size:43 final size:42
Alignment explanation
Indices: 91122356--91122458 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 42
91122346 CAATACTGAC
* * * **
91122356 GTCCCGGACATGGTCTTACATGTAATTCA-ATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACG-AAATCAGATA-CGATGCCAAT
91122399 GTCCCAGACA-GGATCTTACACGAAATCAGATACGATGCCAAT
1 GTCCCAGACATGG-TCTTACACGAAATCAGATACGATGCCAAT
91122441 GTCCCAGACATGGTCTTA
1 GTCCCAGACATGGTCTTA
91122459 TACATAAATC
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
42 30 0.58
43 22 0.42
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCAAT
Found at i:91133567 original size:104 final size:104
Alignment explanation
Indices: 91133432--91133698 Score: 455
Period size: 104 Copynumber: 2.6 Consensus size: 104
91133422 TTGTATATAA
** *
91133432 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
91133497 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
91133536 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
91133600 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
91133640 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
91133699 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
104 152 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:91141138 original size:103 final size:103
Alignment explanation
Indices: 91140910--91141174 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 103
91140900 TTGTATATAA
** *
91140910 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATGGTGGTGCTATGTGCG-TGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGAT-ATCCACCATATCTT
91140974 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
91141013 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGATATCCACCATATCTT
91141078 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
91141117 A-GGGTTGCTAAGTGCTGATT-CCCGATTTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCA-TGGTGGTGCTAAGTGCGATATCCACCA
91141175 ATAACGGTTA
Statistics
Matches: 151, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
102 4 0.03
103 76 0.50
104 70 0.46
105 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGATATCCACCATATCTTT
GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:91146135 original size:43 final size:43
Alignment explanation
Indices: 91146088--91146244 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
91146078 TGTGTATTCG
* * * *
91146088 TGTAAGACCACATCTGGGATGTTGGCATTGATATGTAATTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATTGATATATGATTACA
* * * * * * *
91146131 TGTAAGACCATGTCTGGGACATCGACA-TCATATTTGATT-CG
1 TGTAAGACCACGTCTGGGACGTTGGCATTGATATATGATTACA
* * *
91146172 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGAGATATGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATTGATATATGATTACA
91146215 TGTAAGACCACGTCTGGGACGTTGGCATTG
1 TGTAAGACCACGTCTGGGACGTTGGCATTG
91146245 TACGATATGT
Statistics
Matches: 86, Mismatches: 22, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
41 21 0.24
42 18 0.21
43 46 0.53
44 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATTGATATATGATTACA
Found at i:91151744 original size:20 final size:21
Alignment explanation
Indices: 91151708--91151755 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
91151698 ATTTTGATAT
*
91151708 ACATGATTTGATATGATATGC
1 ACATGATATGATATGATATGC
91151729 ACATGATATG-TATGATATGC
1 ACATGATATGATATGATATGC
91151749 ACATGAT
1 ACATGAT
91151756 GTATTCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:91151879 original size:24 final size:25
Alignment explanation
Indices: 91151803--91151872 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
91151793 GAGGAAGTGC
* * * *
91151803 AAAAGGGCTTCGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
91151828 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
91151853 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
91151873 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:91151885 original size:24 final size:25
Alignment explanation
Indices: 91151802--91151885 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 25
91151792 GGAGGAAGTG
* * *
91151802 CAAAAG-GGCTTCGCCCTAGTTTAC
1 CAAAAGAGGCTTTGCCCCAGTTTAT
91151826 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAGTTTAT
91151851 CAAAA-AGGGCTTTGCCCCAG-TTAT
1 CAAAAGA-GGCTTTGCCCCAGTTTAT
*
91151875 TAAAAGAGGCT
1 CAAAAGAGGCT
91151886 AGGCTTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
24 17 0.33
25 35 0.67
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.25
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:91152155 original size:30 final size:32
Alignment explanation
Indices: 91152119--91152183 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 32
91152109 TGATATGAGT
* *
91152119 TGTGAATTATTAA-AGGCTTCGGCCCAGTA-A
1 TGTGAATTATGAAGAGGCTTCAGCCCAGTATA
91152149 TGTGAATTATGAAGAGGCTTCAGCCCAGTATA
1 TGTGAATTATGAAGAGGCTTCAGCCCAGTATA
91152181 TGT
1 TGT
91152184 TGAGATTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 12 0.39
31 15 0.48
32 4 0.13
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (32 bp):
TGTGAATTATGAAGAGGCTTCAGCCCAGTATA
Found at i:91157247 original size:27 final size:25
Alignment explanation
Indices: 91157217--91157302 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 25
91157207 GGAGGAAGAG
*
91157217 TTCTGGTGGCTATTCTACAAGTATCTA
1 TTCTGGTGGCTCTTC-ACAA-TATCTA
*
91157244 TTCTGGTGGCTCTACCACAATATCTGA
1 TTCTGGTGGCTCT-TCACAATATCT-A
* *
91157271 ATCTGGTGACTCTGTCACAATATCTA
1 TTCTGGTGGCTCT-TCACAATATCTA
91157297 TTCTGG
1 TTCTGG
91157303 CTGCCACACT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
26 11 0.22
27 38 0.76
28 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (25 bp):
TTCTGGTGGCTCTTCACAATATCTA
Found at i:91158493 original size:18 final size:18
Alignment explanation
Indices: 91158472--91158506 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
91158462 GGAAAAATAC
91158472 AAAAATACAAAAA-ATTTA
1 AAAAATA-AAAAATATTTA
91158490 AAAAATAAAAAATATTT
1 AAAAATAAAAAATATTT
91158507 TTTGGGTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAAATAAAAAATATTTA
Found at i:91159369 original size:33 final size:33
Alignment explanation
Indices: 91159327--91159393 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
91159317 ATGTGAAATG
91159327 TAAGCTGATAATTGAGAAATGTTACATTTTAGA
1 TAAGCTGATAATTGAGAAATGTTACATTTTAGA
91159360 TAAGCTGATAATTGAGAAATGTTACATTTTAGA
1 TAAGCTGATAATTGAGAAATGTTACATTTTAGA
91159393 T
1 T
91159394 CAAGATCCCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (33 bp):
TAAGCTGATAATTGAGAAATGTTACATTTTAGA
Found at i:91159795 original size:24 final size:25
Alignment explanation
Indices: 91159767--91159817 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
91159757 GTGTTTCAGT
91159767 TGGACTAGCTCTTATGAGCA-TTGG
1 TGGACTAGCTCTTATGAGCATTTGG
*
91159791 TGGACTAGCTCTTGTGAGCATTTGG
1 TGGACTAGCTCTTATGAGCATTTGG
91159816 TG
1 TG
91159818 TGTTTTGGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.18, C:0.16, G:0.31, T:0.35
Consensus pattern (25 bp):
TGGACTAGCTCTTATGAGCATTTGG
Found at i:91172812 original size:23 final size:24
Alignment explanation
Indices: 91172768--91172812 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
91172758 AAAATCCTAC
*
91172768 CCATCCAGCCTCTACACACCATCT
1 CCATCCAACCTCTACACACCATCT
*
91172792 CCATCCAACC-CTACACTCCAT
1 CCATCCAACCTCTACACACCAT
91172813 GTAGGGATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.27, C:0.51, G:0.02, T:0.20
Consensus pattern (24 bp):
CCATCCAACCTCTACACACCATCT
Found at i:91175135 original size:46 final size:46
Alignment explanation
Indices: 91175082--91175172 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
91175072 TATATATACA
* * *
91175082 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
91175128 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
91175173 ATACACTTCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:91175215 original size:22 final size:22
Alignment explanation
Indices: 91175189--91175310 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
91175179 TTCCACGTTC
91175189 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
91175211 ATCACATATATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
* *
91175236 ATCACATTGGCTATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
91175258 ATCACATATGTG-CATGT-T-CACATT
1 ATCACAT-TG-GCCAT-TCTGC-C-TT
*
91175282 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
91175305 ATCACA
1 ATCACA
91175311 CATATGCATG
Statistics
Matches: 75, Mismatches: 7, Indels: 36
0.64 0.06 0.31
Matches are distributed among these distances:
22 24 0.32
23 17 0.23
24 16 0.21
25 18 0.24
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:91175217 original size:47 final size:47
Alignment explanation
Indices: 91175186--91175571 Score: 583
Period size: 47 Copynumber: 8.2 Consensus size: 47
91175176 CACTTCCACG
*
91175186 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
91175233 TTTATCACATTGGCTATTCGGCCTTATCACATATGTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
91175280 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
91175327 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
91175374 TTCATCACATTGGCCATTCGGCCTTATCACATATGTACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
91175421 TTCATCACATTGGCCATTCAGCCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
91175468 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * * **
91175515 TTCATCACATTTGCCATTCGGCCTTAGCTCATATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
91175562 TTCATCACAT
1 TTCATCACAT
91175572 AAAATCCTAA
Statistics
Matches: 314, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 314 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:91175334 original size:25 final size:25
Alignment explanation
Indices: 91175305--91175382 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
91175295 ATTCGGCCTT
91175305 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
91175330 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
91175352 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
91175377 ATCACA
1 ATCACA
91175383 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:91175523 original size:23 final size:23
Alignment explanation
Indices: 91175450--91175523 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
91175440 AGCCTTATCA
91175450 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
** * *
91175473 CACATTTGCCA--TTCGGCCTTAGCA-
1 CACAAATG-CATGTTC-ACATT--CAT
91175497 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
91175520 CACA
1 CACA
91175524 TTTGCCATTC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 15 0.42
24 11 0.31
25 5 0.14
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (23 bp):
CACAAATGCATGTTCACATTCAT
Found at i:91177890 original size:13 final size:13
Alignment explanation
Indices: 91177872--91177897 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91177862 ATTTTTATTT
91177872 TTAACATAAAATA
1 TTAACATAAAATA
91177885 TTAACATAAAATA
1 TTAACATAAAATA
91177898 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:91190235 original size:21 final size:20
Alignment explanation
Indices: 91190198--91190236 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
91190188 TATGAGCTTC
91190198 ATTCAAAATCTTCTGTACTA
1 ATTCAAAATCTTCTGTACTA
* *
91190218 ATTCAGAATTCTTTTGTAC
1 ATTCA-AAATCTTCTGTAC
91190237 ACATATTCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.44
Consensus pattern (20 bp):
ATTCAAAATCTTCTGTACTA
Found at i:91192070 original size:25 final size:25
Alignment explanation
Indices: 91192029--91192080 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
91192019 TCCCAAAATC
* **
91192029 ACATCAAATTCATCAAATGGTAATA
1 ACATCAAATTCACCAAAAAGTAATA
91192054 ACATCAAA-TCAACCAAAAAGTAATA
1 ACATCAAATTC-ACCAAAAAGTAATA
91192079 AC
1 AC
91192081 TTTTTACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.54, C:0.19, G:0.06, T:0.21
Consensus pattern (25 bp):
ACATCAAATTCACCAAAAAGTAATA
Found at i:91195212 original size:58 final size:57
Alignment explanation
Indices: 91195107--91195215 Score: 134
Period size: 58 Copynumber: 1.9 Consensus size: 57
91195097 TCTTGTTTCC
*
91195107 AACATATGCTCACAAGAGCTTAATCAGGATTACCCGTCCCAAATAAATCCTATCCAT
1 AACATATGCTCACAAGAGCTTAATCAGGATTACCAGTCCCAAATAAATCCTATCCAT
* *
91195164 AACATATGCT--CAAGAGGACTTATATCAGGATTACTAGT-CTAAGATAAATCCT
1 AACATATGCTCACAAGA-G-CTTA-ATCAGGATTACCAGTCCCAA-ATAAATCCT
91195216 TTCTATAATG
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
55 5 0.11
56 1 0.02
57 17 0.38
58 22 0.49
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.27
Consensus pattern (57 bp):
AACATATGCTCACAAGAGCTTAATCAGGATTACCAGTCCCAAATAAATCCTATCCAT
Found at i:91206764 original size:17 final size:19
Alignment explanation
Indices: 91206737--91206771 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
91206727 AAGAAGAGGA
91206737 AAAACATAAAC-ATAAAAG
1 AAAACATAAACAATAAAAG
91206755 AAAA-ATAAACAATAAAA
1 AAAACATAAACAATAAAA
91206772 ATTATTCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.77, C:0.09, G:0.03, T:0.11
Consensus pattern (19 bp):
AAAACATAAACAATAAAAG
Found at i:91208941 original size:27 final size:26
Alignment explanation
Indices: 91208905--91208993 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 26
91208895 GCCATCAGCG
*
91208905 ATGGT-AATATAATCGGCACATAGCC
1 ATGGTAAATATGATCGGCACATAGCC
* * *
91208930 ATGGGTAAATATGATC-ACTACAGAGTC
1 AT-GGTAAATATGATCGGC-ACATAGCC
* *
91208957 ATCGATAAATATGATAGGCACATAGCC
1 AT-GGTAAATATGATCGGCACATAGCC
91208984 ACTGGTAAAT
1 A-TGGTAAAT
91208994 GCGATTTGCA
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
25 2 0.04
26 4 0.08
27 40 0.83
28 2 0.04
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (26 bp):
ATGGTAAATATGATCGGCACATAGCC
Found at i:91213539 original size:24 final size:24
Alignment explanation
Indices: 91213511--91213577 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
91213501 CTCCTTAAAT
* *
91213511 CTCTCCATAAATCACTCCTTGATT
1 CTCTCCATAAATCACTCCATGATA
* * *
91213535 TTCTCC-TAATATCTCTTCATGATA
1 CTCTCCATAA-ATCACTCCATGATA
*
91213559 CACTCCATAAATCACTCCA
1 CTCTCCATAAATCACTCCA
91213578 ACCTCCCATT
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
23 3 0.09
24 26 0.81
25 3 0.09
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (24 bp):
CTCTCCATAAATCACTCCATGATA
Found at i:91215422 original size:108 final size:108
Alignment explanation
Indices: 91215233--91215469 Score: 447
Period size: 108 Copynumber: 2.2 Consensus size: 108
91215223 GCCGTGTGTC
91215233 TCACACTGCCAAAGACACGCCCGTGTCACAGGCCGTGTGGACATTCGAAATGCGATCACATGGCC
1 TCACACTGCCAAAGACACGCCCGTGTCACAGGCCGTGTGGACATTCGAAATGCGATCACATGGCC
91215298 ATGTCCCAGCCCGAGTCCTACCCGTTTAACTCCCTAACTTAGG
66 ATGTCCCAGCCCGAGTCCTACCCGTTTAACTCCCTAACTTAGG
91215341 TCACACTGCCAAAGACACGCCCGTGTCACAGGCCGTGTGGACATTCGAAATGCGATCACATGGCC
1 TCACACTGCCAAAGACACGCCCGTGTCACAGGCCGTGTGGACATTCGAAATGCGATCACATGGCC
91215406 ATGTCCCAGCCCGAGTCCTACCCGTTTAACTCCCTAACTTAGG
66 ATGTCCCAGCCCGAGTCCTACCCGTTTAACTCCCTAACTTAGG
* **
91215449 TCACACGGCCAACCACACGCC
1 TCACACTGCCAAAGACACGCC
91215470 TGTCTGACCA
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 126 1.00
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (108 bp):
TCACACTGCCAAAGACACGCCCGTGTCACAGGCCGTGTGGACATTCGAAATGCGATCACATGGCC
ATGTCCCAGCCCGAGTCCTACCCGTTTAACTCCCTAACTTAGG
Found at i:91218280 original size:25 final size:25
Alignment explanation
Indices: 91218251--91218298 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
91218241 TTATAATATG
* * *
91218251 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
91218276 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
91218299 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:91218360 original size:20 final size:20
Alignment explanation
Indices: 91218335--91218377 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
91218325 ATTTTGATAA
91218335 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
91218355 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
91218375 ACA
1 ACA
91218378 CGAGATGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:91218385 original size:20 final size:20
Alignment explanation
Indices: 91218342--91218385 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
91218332 TAAACATGAT
* *
91218342 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACACGAG
91218362 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
91218382 ATGT
1 ATGT
91218386 TCATAAATGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:91218510 original size:23 final size:24
Alignment explanation
Indices: 91218431--91218555 Score: 191
Period size: 24 Copynumber: 5.2 Consensus size: 24
91218421 GAGGAAGTGC
*
91218431 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
91218455 AAAAGGGCTTATTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
91218479 AAAAGGGCTTATGCCCCAGCTATT
1 AAAAGGGCTTATGCCCCAGTTATT
91218503 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
91218526 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
91218551 AAAAG
1 AAAAG
91218556 AGACTAGGCC
Statistics
Matches: 93, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
23 27 0.29
24 44 0.47
25 13 0.14
26 9 0.10
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:91218803 original size:31 final size:31
Alignment explanation
Indices: 91218767--91218830 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
91218757 CGCTTACCGT
*
91218767 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
91218798 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
91218829 AA
1 AA
91218831 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:91220657 original size:43 final size:43
Alignment explanation
Indices: 91220563--91220713 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 43
91220553 TATCCTAGAT
* ** * * *
91220563 ATGGTCTTACATGTTATCACATATCGATGCCATTGTCCCAAAC
1 ATGGTCTTACACGAAATCACATAACGATGCCAATGTCCCAGAC
* *
91220606 A-GGATCTTATACGAAATCATATAACGATGCCAATGTCCCAGAC
1 ATGG-TCTTACACGAAATCACATAACGATGCCAATGTCCCAGAC
* * * *
91220649 ATGGTCTTACCCGTAATCACA-ATACAATGCCAATATCCCAGAC
1 ATGGTCTTACACGAAATCACATA-ACGATGCCAATGTCCCAGAC
* *
91220692 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACACGAAATCACAT
91220714 CTCGATAATC
Statistics
Matches: 88, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
42 3 0.03
43 83 0.94
44 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCACATAACGATGCCAATGTCCCAGAC
Found at i:91226072 original size:27 final size:27
Alignment explanation
Indices: 91226039--91226094 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
91226029 TAAAATAAGA
91226039 CTTATGAAAATAATGCTACGGGAATAT
1 CTTATGAAAATAATGCTACGGGAATAT
91226066 CTTATGAAAATAATGCTACGGGAATAT
1 CTTATGAAAATAATGCTACGGGAATAT
91226093 CT
1 CT
91226095 AATGCATGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (27 bp):
CTTATGAAAATAATGCTACGGGAATAT
Done.