Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 276 of 343
Found at i:91608480 original size:45 final size:43
Alignment explanation
Indices: 91608428--91608541 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 43
91608418 ATCTGTTGTT
* * *
91608428 CTGCAACTTTAGAGAGATAAGATTTTCCATCTTCGATCTACTCTA
1 CTGCAACTTCAGAGAGATAAGATTTT--AACTTCGATCTACTCCA
* *
91608473 CTGCAACTTCA-AGGAGATAAGATCTATAACTTCTATCTACTCCA
1 CTGCAACTTCAGA-GAGATAAGAT-TTTAACTTCGATCTACTCCA
* *
91608517 CTACAACTTCAGGGAGATAAGATTT
1 CTGCAACTTCAGAGAGATAAGATTT
91608542 GCCGTGGTAG
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.02
44 35 0.60
45 20 0.34
46 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (43 bp):
CTGCAACTTCAGAGAGATAAGATTTTAACTTCGATCTACTCCA
Found at i:91617076 original size:14 final size:13
Alignment explanation
Indices: 91617047--91617072 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91617037 CAGTTTACTA
91617047 ACCCTAATAGACT
1 ACCCTAATAGACT
91617060 ACCCTAATAGACT
1 ACCCTAATAGACT
91617073 TACCACTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23
Consensus pattern (13 bp):
ACCCTAATAGACT
Found at i:91638402 original size:3 final size:3
Alignment explanation
Indices: 91638394--91638434 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
91638384 GGTAACTAAC
91638394 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
91638435 GAAATCCAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:91639466 original size:6 final size:6
Alignment explanation
Indices: 91639452--91639484 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
91639442 AAACAAGAAG
*
91639452 AAATAA AAATGA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
91639485 CATAATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:91639469 original size:12 final size:12
Alignment explanation
Indices: 91639452--91639497 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
91639442 AAACAAGAAG
91639452 AAATAAAAATGA
1 AAATAAAAATGA
*
91639464 AAATAAAAATAA
1 AAATAAAAATGA
*
91639476 AAATAAAAA-CA
1 AAATAAAAATGA
*
91639487 TAATAAAAATG
1 AAATAAAAATG
91639498 CAACCTTTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 9 0.31
12 20 0.69
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.17
Consensus pattern (12 bp):
AAATAAAAATGA
Found at i:91639475 original size:18 final size:18
Alignment explanation
Indices: 91639452--91639497 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
91639442 AAACAAGAAG
91639452 AAATAAAAATGAAAATA-A
1 AAATAAAAATGAAAA-ACA
91639470 AAATAAAAAT-AAAAACA
1 AAATAAAAATGAAAAACA
*
91639487 TAATAAAAATG
1 AAATAAAAATG
91639498 CAACCTTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 1 0.04
17 14 0.56
18 10 0.40
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.17
Consensus pattern (18 bp):
AAATAAAAATGAAAAACA
Found at i:91639895 original size:18 final size:20
Alignment explanation
Indices: 91639865--91639901 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
91639855 ATTTTGGGCT
91639865 TGTAAATTGGAC-TTGATAC
1 TGTAAATTGGACTTTGATAC
91639884 TGTAAA-TGGACTTTGATA
1 TGTAAATTGGACTTTGATA
91639902 ATTTAGACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (20 bp):
TGTAAATTGGACTTTGATAC
Found at i:91642943 original size:19 final size:20
Alignment explanation
Indices: 91642919--91642960 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
91642909 AACTGTTCAT
91642919 TTGGT-CAAGTATCGATACC
1 TTGGTCCAAGTATCGATACC
*
91642938 TTGGTCCCTAGTATCGATACC
1 TTGGT-CCAAGTATCGATACC
91642959 TT
1 TT
91642961 TATCCAGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
21 15 0.75
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (20 bp):
TTGGTCCAAGTATCGATACC
Found at i:91647800 original size:12 final size:14
Alignment explanation
Indices: 91647783--91647814 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
91647773 TTATCTTCTC
91647783 ATTTTTTTCT-TT-
1 ATTTTTTTCTATTG
91647795 ATTTTTTTCTATTG
1 ATTTTTTTCTATTG
91647809 ATTTTT
1 ATTTTT
91647815 ACCATCTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 10 0.56
13 2 0.11
14 6 0.33
ACGTcount: A:0.12, C:0.06, G:0.03, T:0.78
Consensus pattern (14 bp):
ATTTTTTTCTATTG
Found at i:91648821 original size:36 final size:37
Alignment explanation
Indices: 91648723--91648822 Score: 112
Period size: 37 Copynumber: 2.7 Consensus size: 37
91648713 TTAAATGTTA
* *
91648723 TGTTCTTACTGAATGCATGTAAAGCATGCCACCATTAC
1 TGTT-TTACTGAATGTATGTAAAGCATACCACCATTAC
* ** * *
91648761 TGTTTTATTGAATGTATCCAAAGCATACCACTATTAT
1 TGTTTTACTGAATGTATGTAAAGCATACCACCATTAC
*
91648798 TG-TTTACTGAATGTATGTTAAGCAT
1 TGTTTTACTGAATGTATGTAAAGCAT
91648823 GCCATCGTGA
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
36 19 0.37
37 28 0.55
38 4 0.08
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (37 bp):
TGTTTTACTGAATGTATGTAAAGCATACCACCATTAC
Found at i:91655763 original size:19 final size:20
Alignment explanation
Indices: 91655739--91655776 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
91655729 TAATAATAAT
91655739 AATAGTTGA-ATATTTAAAA
1 AATAGTTGATATATTTAAAA
*
91655758 AATAGTTTATATATTTAAA
1 AATAGTTGATATATTTAAA
91655777 TTAAAGCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (20 bp):
AATAGTTGATATATTTAAAA
Found at i:91661652 original size:41 final size:41
Alignment explanation
Indices: 91661599--91661727 Score: 168
Period size: 41 Copynumber: 3.1 Consensus size: 41
91661589 TTTCCAAATC
**
91661599 AATGAAGAGGTTGAAAAGGATGTTATCTGAAAAGGATATCA
1 AATGAAGAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
*
91661640 AATGAAGAGGTTGAAAAGGATGTTATCCAAAAAGGGTATCA
1 AATGAAGAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
* * ** * * *
91661681 AATGAAAAGGTTGAAAATGACATTATCCAAAAAAGACAACA
1 AATGAAGAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
91661722 AATGAA
1 AATGAA
91661728 AAAGGTCAGT
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 77 1.00
ACGTcount: A:0.49, C:0.08, G:0.22, T:0.21
Consensus pattern (41 bp):
AATGAAGAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
Found at i:91663555 original size:18 final size:19
Alignment explanation
Indices: 91663520--91663558 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
91663510 GTGACCCTTG
* *
91663520 TTTCCCAAATTTTCATGTT
1 TTTCCAAAAATTTCATGTT
91663539 TTTCCAAAAATTT-ATGTT
1 TTTCCAAAAATTTCATGTT
91663557 TT
1 TT
91663559 GTTTCAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.26, C:0.15, G:0.05, T:0.54
Consensus pattern (19 bp):
TTTCCAAAAATTTCATGTT
Found at i:91664868 original size:22 final size:22
Alignment explanation
Indices: 91664836--91664883 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
91664826 TGTCCAGTAC
91664836 AATTTAATATAAAATTAATCAA
1 AATTTAATATAAAATTAATCAA
* *
91664858 AATTTATTATAAAATTAATTAA
1 AATTTAATATAAAATTAATCAA
91664880 AATT
1 AATT
91664884 CAACAAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AATTTAATATAAAATTAATCAA
Found at i:91665303 original size:16 final size:16
Alignment explanation
Indices: 91665282--91665364 Score: 87
Period size: 16 Copynumber: 5.2 Consensus size: 16
91665272 GATTCACTTG
91665282 AATGGAATAGGGCTGT
1 AATGGAATAGGGCTGT
*
91665298 AATGGAATAGGGCTAT
1 AATGGAATAGGGCTGT
* *
91665314 AATGGAAT-GAAGTTGT
1 AATGGAATAG-GGCTGT
* *
91665330 AATGGAATAGAGCTAT
1 AATGGAATAGGGCTGT
* *
91665346 AATAGAATAGGGTTGT
1 AATGGAATAGGGCTGT
91665362 AAT
1 AAT
91665365 CAGTAATTCA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
15 1 0.02
16 53 0.96
17 1 0.02
ACGTcount: A:0.39, C:0.04, G:0.30, T:0.28
Consensus pattern (16 bp):
AATGGAATAGGGCTGT
Found at i:91665361 original size:32 final size:32
Alignment explanation
Indices: 91665286--91665364 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 32
91665276 CACTTGAATG
* * *
91665286 GAATAGGGCTGTAATGGAATAGGGCTATAATG
1 GAATAGGGTTGTAATGGAATAGAGCTATAATA
*
91665318 GAAT-GAAGTTGTAATGGAATAGAGCTATAATA
1 GAATAG-GGTTGTAATGGAATAGAGCTATAATA
91665350 GAATAGGGTTGTAAT
1 GAATAGGGTTGTAAT
91665365 CAGTAATTCA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 1 0.03
32 38 0.95
33 1 0.03
ACGTcount: A:0.38, C:0.04, G:0.30, T:0.28
Consensus pattern (32 bp):
GAATAGGGTTGTAATGGAATAGAGCTATAATA
Found at i:91670814 original size:14 final size:14
Alignment explanation
Indices: 91670792--91670823 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
91670782 TTTGCCAAGT
91670792 ACATATTCTTTTGC
1 ACATATTCTTTTGC
*
91670806 ACATGTTCTTTTGC
1 ACATATTCTTTTGC
91670820 ACAT
1 ACAT
91670824 CTATTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.22, G:0.09, T:0.47
Consensus pattern (14 bp):
ACATATTCTTTTGC
Found at i:91679594 original size:12 final size:12
Alignment explanation
Indices: 91679577--91679602 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91679567 GTAACAGGTG
91679577 CATTACACAAAC
1 CATTACACAAAC
91679589 CATTACACAAAC
1 CATTACACAAAC
91679601 CA
1 CA
91679603 AATGGTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (12 bp):
CATTACACAAAC
Found at i:91688433 original size:26 final size:26
Alignment explanation
Indices: 91688398--91688533 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
91688388 GAAGAAGTGA
91688398 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
91688424 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
91688450 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
91688476 AAAAGGGCTTATGCCCCAGATTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
91688502 -AAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
91688524 AAAAGAGGCT
1 AAAAG-GGCT
91688534 AGGCCTCCAG
Statistics
Matches: 99, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
23 8 0.08
24 12 0.12
25 9 0.09
26 70 0.71
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:91693719 original size:13 final size:13
Alignment explanation
Indices: 91693701--91693725 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91693691 AAGTAATCGC
91693701 ACACGGGCGTGTT
1 ACACGGGCGTGTT
91693714 ACACGGGCGTGT
1 ACACGGGCGTGT
91693726 CCCTGCCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:91695485 original size:43 final size:43
Alignment explanation
Indices: 91695437--91695518 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
91695427 ATTACCGAAA
* *
91695437 TGTGATTATATGTAAGACCGTGTATGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTATGGGACATTGGCATTGTAT
*
91695480 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATT
1 TGTGATTACATGTAAGACCATGTATGGGACATTGGCATT
91695519 ATTATATGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTATGGGACATTGGCATTGTAT
Found at i:91695529 original size:43 final size:43
Alignment explanation
Indices: 91695439--91695605 Score: 126
Period size: 43 Copynumber: 3.9 Consensus size: 43
91695429 TACCGAAATG
* * * * *
91695439 TGATTATATGTAAGACCGTGTATGGGACATTGGCATT-GTATTG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTATTA-TA
91695482 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTATTATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTATTATA
* * * * * * *
91695525 TGATTTCGTGTAAGAATC-TGTCTGAGATAGTGGCATCGA-TATA
1 TGATTACATGTAAG-ACCATGTCTGGGACATTGGCAT-TATTATA
* * * * *
91695568 TGATAACATATAAGACCATATCTAGGATA-TGGCATTAT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTAT
91695606 ATAAGCTTTA
Statistics
Matches: 98, Mismatches: 21, Indels: 11
0.75 0.16 0.08
Matches are distributed among these distances:
41 1 0.01
42 8 0.08
43 84 0.86
44 5 0.05
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.35
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATTATTATA
Found at i:91710146 original size:38 final size:38
Alignment explanation
Indices: 91710097--91710175 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
91710087 TGATTAAATG
91710097 TGTAAAACATGAAATAGGAGTAGAAGATGTTATGATTA
1 TGTAAAACATGAAATAGGAGTAGAAGATGTTATGATTA
91710135 TGTAAAACATGAAATAGGAGTAGAAGATGTTATGATTA
1 TGTAAAACATGAAATAGGAGTAGAAGATGTTATGATTA
91710173 TGT
1 TGT
91710176 TGCATGTCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.43, C:0.03, G:0.24, T:0.30
Consensus pattern (38 bp):
TGTAAAACATGAAATAGGAGTAGAAGATGTTATGATTA
Found at i:91710626 original size:20 final size:21
Alignment explanation
Indices: 91710583--91710627 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
91710573 CAAAGGTATC
91710583 GATATTCAGGTTTTAAAAATT
1 GATATTCAGGTTTTAAAAATT
*
91710604 GATATTCGGGTTTTAAAAA-T
1 GATATTCAGGTTTTAAAAATT
91710624 GATA
1 GATA
91710628 CATCTGAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (21 bp):
GATATTCAGGTTTTAAAAATT
Found at i:91714283 original size:54 final size:54
Alignment explanation
Indices: 91714219--91714370 Score: 164
Period size: 55 Copynumber: 2.8 Consensus size: 54
91714209 TAAATTGTAC
* * *
91714219 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGTGAAAGGAA-TATG-
1 AGCACTAAGTGTGCGATT-GATTATGTGGCACTAAGTGTGCGAAACGAACTATGT
** * * *
91714272 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATGT
1 A-GCACTAAGTGTGCG-ATTGATTATGTGGCACTAAGTGTGCGAAACGAACTATGT
* *
91714328 AGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA-TTGATTATGTGGCACTAAGTGTGCGA
91714371 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
53 1 0.01
54 37 0.46
55 42 0.52
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGATTATGTGGCACTAAGTGTGCGAAACGAACTATGT
Found at i:91714341 original size:28 final size:27
Alignment explanation
Indices: 91714274--91714343 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
91714264 GGAATATGAT
* *
91714274 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
91714301 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
91714329 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
91714344 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:91714375 original size:27 final size:27
Alignment explanation
Indices: 91714220--91714375 Score: 136
Period size: 27 Copynumber: 5.7 Consensus size: 27
91714210 AAATTGTACA
* *
91714220 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* ** *
91714247 GCACTAAGTGTGTGAAAGGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
91714274 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
91714301 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
91714329 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
91714356 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
91714376 GTGAATAGCA
Statistics
Matches: 103, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
27 80 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:91723994 original size:22 final size:22
Alignment explanation
Indices: 91723952--91723995 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
91723942 AATTATTTAC
* *
91723952 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
91723974 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
91723996 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:91724296 original size:40 final size:40
Alignment explanation
Indices: 91724222--91724441 Score: 327
Period size: 40 Copynumber: 5.5 Consensus size: 40
91724212 AACCCAAGTA
* * *
91724222 CCTTCGAGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
91724261 CCTTCGGGTCTTAGCCCGGATATAGTCAGTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
91724301 CCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
91724341 CCTTCGGGACTTAGCCTGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
91724381 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
91724421 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
91724442 CTCATTCGAA
Statistics
Matches: 163, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 11 0.07
40 151 0.93
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:91727811 original size:48 final size:48
Alignment explanation
Indices: 91727663--91727836 Score: 179
Period size: 48 Copynumber: 3.6 Consensus size: 48
91727653 TATGTGTGCT
* *
91727663 AGTGTAAGACCATGTCTGGGACATGGCATCGACCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGA-CATGAGAGCC
* * * * * * * *
91727711 AGTTTAAGACCATGTATGGGACATGGCATCGGCGTTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGACATGAGAGCC
* * *
91727759 AGTGTAAGACCATGTCTAGGACATGGCATCCACCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGACATGAGAGCC
* * * *
91727807 AGTGTAACACCATGTTTCGAACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
91727837 AGCAATTCAC
Statistics
Matches: 101, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
48 100 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGACATGAGAGCC
Found at i:91727831 original size:96 final size:96
Alignment explanation
Indices: 91727660--91727836 Score: 248
Period size: 96 Copynumber: 1.8 Consensus size: 96
91727650 TGATATGTGT
* * * * *
91727660 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTTTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCCACCACATCATGAGAGCCAGTGTAACACCATG
* *
91727725 TATGGGACATGGCATCGGCGTTGAGACGAGA
66 TATCGAACATGGCATCGGCGTTGAGACGAGA
* *
91727756 GCTAGTGTAAGACCATGTCTAGGACATGGCATCCACCTCGA-CATGTGAGCCAGTGTAACACCAT
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCCACCAC-ATCATGAGAGCCAGTGTAACACCAT
*
91727820 GTTTCGAACATGGCATC
65 GTATCGAACATGGCATC
91727837 AGCAATTCAC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
96 69 0.99
97 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCCACCACATCATGAGAGCCAGTGTAACACCATG
TATCGAACATGGCATCGGCGTTGAGACGAGA
Found at i:91730402 original size:22 final size:22
Alignment explanation
Indices: 91730349--91730431 Score: 78
Period size: 23 Copynumber: 3.6 Consensus size: 22
91730339 CCTGAGCTGA
* **
91730349 TGAACGGTAAGCTCTGTTGAGT
1 TGAACAGTAAGCTCTGACGAGT
91730371 TGAAACAGTAAGCTCTGACGAGT
1 TG-AACAGTAAGCTCTGACGAGT
*
91730394 TGAACAGTAAACTCAT-ACGAGCT
1 TGAACAGTAAGCTC-TGACGAG-T
*
91730417 GAGAACAGTAAGCTC
1 -TGAACAGTAAGCTC
91730432 ATACAAGTTG
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
22 18 0.35
23 21 0.41
24 12 0.24
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (22 bp):
TGAACAGTAAGCTCTGACGAGT
Found at i:91730627 original size:17 final size:19
Alignment explanation
Indices: 91730601--91730647 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 19
91730591 GCATCCATAT
*
91730601 TTCAAGTATATCA-ATT-A
1 TTCAAATATATCACATTCA
91730618 TTCAAATATA-CACATTCA
1 TTCAAATATATCACATTCA
91730636 TTACAAATATAT
1 TT-CAAATATAT
91730648 ACAAGTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 2 0.08
17 12 0.48
18 3 0.12
19 8 0.32
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (19 bp):
TTCAAATATATCACATTCA
Found at i:91733857 original size:42 final size:42
Alignment explanation
Indices: 91733753--91733910 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
91733743 CGTACAATGC
* * * *
91733753 CAAC-GTCCCAGACGTGGTCTTAGATGTAATCAAATATCGATG
1 CAACTGTCCCAGACATGGTCTTACACGAAATCAAATA-CGATG
* * *
91733795 CCACTATCCCAGACAGGGTCTTACACGAAATCAAATACGATG
1 CAACTGTCCCAGACATGGTCTTACACGAAATCAAATACGATG
* *
91733837 CAAATGTCCCAAACATGGTCTTACACGTAAATCATAAGT-CGATG
1 CAACTGTCCCAGACATGGTCTTACACG-AAATCA-AA-TACGATG
* *
91733881 CCAACT-TCCCAGACGTGGACTTACACGAAA
1 -CAACTGTCCCAGACATGGTCTTACACGAAA
91733911 ACACATATCG
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 30 0.32
43 35 0.37
44 25 0.26
45 5 0.05
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (42 bp):
CAACTGTCCCAGACATGGTCTTACACGAAATCAAATACGATG
Found at i:91734576 original size:22 final size:22
Alignment explanation
Indices: 91734548--91734599 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
91734538 ACTCATAATT
*
91734548 TCATCAATGGCTCAACTCAAAA
1 TCATCAACGGCTCAACTCAAAA
91734570 TCATCAACGGCTCAACTCAAAA
1 TCATCAACGGCTCAACTCAAAA
91734592 TCATCAAC
1 TCATCAAC
91734600 AATTTCAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.31, G:0.08, T:0.21
Consensus pattern (22 bp):
TCATCAACGGCTCAACTCAAAA
Found at i:91739736 original size:46 final size:46
Alignment explanation
Indices: 91739683--91739858 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
91739673 TGGTTGAGCA
91739683 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
91739729 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* *
91739774 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91739822 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91739859 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 6 0.05
43 5 0.05
45 2 0.02
46 61 0.55
47 25 0.23
48 2 0.02
50 4 0.04
51 6 0.05
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:91739839 original size:93 final size:93
Alignment explanation
Indices: 91739680--91739849 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
91739670 AGATGGTTGA
* *
91739680 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91739745 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* *
91739773 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91739838 TGAGTCCGAGTT
66 TGAGTCCGAGTT
91739850 CGCTTATGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:91746815 original size:46 final size:46
Alignment explanation
Indices: 91746765--91746938 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
91746755 GTTGAGCATA
91746765 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
91746811 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* * * *
91746858 TGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
91746904 CGAGCTCGTTGAGTTTAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91746939 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 18
0.77 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:91754339 original size:26 final size:26
Alignment explanation
Indices: 91754310--91754361 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
91754300 ACTCAATTGA
*
91754310 CATCCATTGTTCTCCTTTCCCTAGTT
1 CATCCATTGTTCTCCTCTCCCTAGTT
91754336 CATCCATTGTTCTCCTCTCCCTAGTT
1 CATCCATTGTTCTCCTCTCCCTAGTT
91754362 TTTCTTCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.12, C:0.37, G:0.08, T:0.44
Consensus pattern (26 bp):
CATCCATTGTTCTCCTCTCCCTAGTT
Found at i:91755670 original size:47 final size:47
Alignment explanation
Indices: 91755614--91755713 Score: 119
Period size: 47 Copynumber: 2.1 Consensus size: 47
91755604 GTTTAACCAC
* * * *
91755614 ATATCTATTCTAGTAGCTTGGCTGCAAATATTATGGCTTGACCACAT
1 ATATCTATTCTAGCAACTAGGCTGCAAATATAATGGCTTGACCACAT
* * * * *
91755661 ATATTTATTCTGGCAACTAGGTTGCAAATGTAATGTCTTGACCACAT
1 ATATCTATTCTAGCAACTAGGCTGCAAATATAATGGCTTGACCACAT
91755708 ATATCT
1 ATATCT
91755714 GTTATGGCAG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (47 bp):
ATATCTATTCTAGCAACTAGGCTGCAAATATAATGGCTTGACCACAT
Found at i:91759195 original size:17 final size:18
Alignment explanation
Indices: 91759164--91759202 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
91759154 ATCTCATTAG
* *
91759164 TTTTATATCTATAAATAT
1 TTTTATATATATAAACAT
91759182 TTTTATATAT-TAAACAT
1 TTTTATATATATAAACAT
91759199 TTTT
1 TTTT
91759203 TAAAAATATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTTATATATATAAACAT
Found at i:91761280 original size:41 final size:43
Alignment explanation
Indices: 91761185--91761328 Score: 159
Period size: 43 Copynumber: 3.4 Consensus size: 43
91761175 GTTTTCGTGC
* * * *
91761185 AAGACAATGTTTGGGACGTTGGCATCGATATGTGGTTACATGT
1 AAGACCATGTCTGGGACATTGGCATCGATATGTGATTACATGT
*
91761228 AAGACCATGTCTGGGACATTGGCATCG-TATTTGATT-CATGT
1 AAGACCATGTCTGGGACATTGGCATCGATATGTGATTACATGT
* * * *
91761269 AAGACCCTGTCTGGGACAGTGGCATCGATATGAGA-TAGGATGT
1 AAGACCATGTCTGGGACATTGGCATCGATATGTGATTA-CATGT
* *
91761312 AAGATCACGTCTGGGAC
1 AAGACCATGTCTGGGAC
91761329 GTTGCCATTG
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
41 31 0.36
42 12 0.14
43 42 0.49
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.28
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATTGGCATCGATATGTGATTACATGT
Found at i:91762402 original size:20 final size:22
Alignment explanation
Indices: 91762373--91762420 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
91762363 GTGATGTATA
*
91762373 TATATATTGGTTTATTA-AATG
1 TATATATTGGCTTATTACAATG
*
91762394 -ATATTTTGGCTTATTACAATG
1 TATATATTGGCTTATTACAATG
91762415 TATATA
1 TATATA
91762421 AAATTTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 14 0.64
21 4 0.18
22 4 0.18
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.50
Consensus pattern (22 bp):
TATATATTGGCTTATTACAATG
Found at i:91766803 original size:13 final size:14
Alignment explanation
Indices: 91766779--91766807 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
91766769 ATTTTCTAGT
91766779 TTACTAAATTAACC
1 TTACTAAATTAACC
91766793 TTACT-AATTAACC
1 TTACTAAATTAACC
91766806 TT
1 TT
91766808 TAAATCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (14 bp):
TTACTAAATTAACC
Found at i:91781052 original size:25 final size:25
Alignment explanation
Indices: 91781018--91781096 Score: 113
Period size: 25 Copynumber: 3.2 Consensus size: 25
91781008 CTCTTTTAAT
*
91781018 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* * *
91781043 AACTAGGGCAAAGTCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
91781068 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
91781093 AACT
1 AACT
91781097 TTTAGCACTT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:91781361 original size:27 final size:27
Alignment explanation
Indices: 91781302--91781568 Score: 317
Period size: 27 Copynumber: 10.0 Consensus size: 27
91781292 GGGGCAAAAT
* *
91781302 GGTAATTTTACCC-A-A-GGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
91781326 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
91781353 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
91781380 GGTAATTCTACCCTACAGGGGTCTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
91781407 AGTAATTCTACCCTATA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
91781433 AGTAATTCTACCCTATAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* **
91781460 GGTAATTTTACCCTACAGGATTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
91781487 AGTAATTCTACCTTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
91781514 GGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
91781541 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
91781568 G
1 G
91781569 ATATTTTACA
Statistics
Matches: 209, Mismatches: 30, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
24 11 0.05
25 1 0.00
26 26 0.12
27 171 0.82
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:91781457 original size:107 final size:106
Alignment explanation
Indices: 91781303--91781577 Score: 367
Period size: 107 Copynumber: 2.6 Consensus size: 106
91781293 GGGCAAAATG
* *
91781303 GTAATTTTACCC-A-AGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 GTAATTCTACCCTATAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTT-TACCC
* * *
91781366 TACAAGG-GTATTTCGGTAATTCTACCCTACAGGGGTCTTTCA
65 TAC-AGGAGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
* *
91781408 GTAATTCTACCCTATAGGGTATTTCAGTAATTCTACCCTATAGGAGTATTTCGGTAATTTTACCC
1 GTAATTCTACCCTATAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT-ATTTTACCC
* * * *
91781473 TACAGGATTATTTCAGTAATTCTACCTTATAAGGGTATTTCG
65 TACAGGAGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
** *
91781515 GTAATTCTACCCTATAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATATTTTAC
1 GTAATTCTACCCTAT-AGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTTAC
91781578 AAATTGAGAG
Statistics
Matches: 149, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
105 11 0.07
106 4 0.03
107 95 0.64
108 39 0.26
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (106 bp):
GTAATTCTACCCTATAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTTACCCT
ACAGGAGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
Found at i:91781600 original size:134 final size:134
Alignment explanation
Indices: 91781328--91781601 Score: 329
Period size: 134 Copynumber: 2.0 Consensus size: 134
91781318 GGTATCTCAG
* * * *
91781328 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
1 TAATTTTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
* * * **
91781393 TACAGGGGTCTTTCAGTAATTCTACCCTATAGGGTATTTCAGTAATTCTACCCTATAGGAGTATT
66 TACAAGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCAGTAATTCTACCAAATAGGAGTATT
*
91781458 TCGG
131 TCGA
* * *
91781462 TAATTTTACCCTACAGGATTATTTCAGTAATTCTACCTTATAAGGGTATTTCGGTAATTCTACCC
1 TAATTTTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
* ** * *
91781527 TATAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC-G-ATATTTTA-CAAATTGAGAGT
66 TACAAGGGTATTTCAGTAATTCTACCCTACA-GGGTATTTCAGTA-ATTCTACCAAATAG-GAGT
*
91781589 ATTTTGA
128 ATTTCGA
91781596 TAATTT
1 TAATTT
91781602 CACAAATCAG
Statistics
Matches: 118, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
133 5 0.04
134 104 0.88
135 9 0.08
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (134 bp):
TAATTTTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
TACAAGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCAGTAATTCTACCAAATAGGAGTATT
TCGA
Found at i:91781769 original size:27 final size:27
Alignment explanation
Indices: 91781587--91781765 Score: 225
Period size: 27 Copynumber: 6.6 Consensus size: 27
91781577 CAAATTGAGA
* * *
91781587 GTATTTTGATAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
91781614 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
91781641 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
91781668 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
** *
91781695 GTATTTTGGTAATTTTACTGATC-GAGG
1 GTATTTTGGTAATTTTACAAACCAG-GG
** * *
91781722 GTATTTTGGTAATTTTTTAAACCAAGA
1 GTATTTTGGTAATTTTACAAACCAGGG
*
91781749 GTATTTTAGTAATTTTA
1 GTATTTTGGTAATTTTA
91781766 TAAATCGAGG
Statistics
Matches: 131, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 130 0.99
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:91781777 original size:54 final size:54
Alignment explanation
Indices: 91781587--91781832 Score: 203
Period size: 54 Copynumber: 4.6 Consensus size: 54
91781577 CAAATTGAGA
* * * *
91781587 GTATTTT-GATAATTTCACAAATC-AGGGGTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTAG-TAATTTTATAAATCGA-GGGTATTTTGGTAATTTTACAAACCAAGG
* * * * *
91781641 GTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTAGTAATTTTATAAATCGA-GGGTATTTTGGTAATTTTACAAACCAAGG
* * ** *
91781695 GTATTTTGGTAATTTTACT-GATCGAGGGTATTTTGGTAATTTTTTAAACCAAGA
1 GTATTTTAGTAATTTTA-TAAATCGAGGGTATTTTGGTAATTTTACAAACCAAGG
*** * * * *
91781749 GTATTTTAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGG
1 GTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAAACCAAGG
*** *
91781803 GTAAAATAGTAATTCTATAAATCGAGGGTA
1 GTATTTTAGTAATTTTATAAATCGAGGGTA
91781833 AAACGGTAAT
Statistics
Matches: 162, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.01
54 157 0.97
55 3 0.02
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (54 bp):
GTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAAACCAAGG
Found at i:91781778 original size:81 final size:81
Alignment explanation
Indices: 91781532--91781776 Score: 262
Period size: 81 Copynumber: 3.0 Consensus size: 81
91781522 TACCCTATAA
* **** * * ***
91781532 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGAT-ATTTTACAAATTGAGAGTATTTT-G
1 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAAGAGTATTTTAG
*
91781595 ATAATTTCACAAATCAG
66 -TAATTTTACAAATCAG
* *
91781612 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAAGAGTATTTTAG
*
91781677 TAATTTTACAAACCAG
66 TAATTTTACAAATCAG
* * * **
91781693 GGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTTTTAAACCAAGAGTATTTTA
1 GGGTATTTTGGTAATTTTAC-AAGCCAGGGGTATTTTGGTAATTTTACAAACCAAGAGTATTTTA
*
91781757 GTAATTTTATAAATCGAG
65 GTAATTTTACAAATC-AG
91781775 GG
1 GG
91781777 TAAAATGGTA
Statistics
Matches: 138, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
80 32 0.23
81 98 0.71
82 8 0.06
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAAGAGTATTTTAG
TAATTTTACAAATCAG
Found at i:91781787 original size:27 final size:27
Alignment explanation
Indices: 91781757--91782073 Score: 445
Period size: 27 Copynumber: 11.7 Consensus size: 27
91781747 GAGTATTTTA
*
91781757 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
91781784 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
91781811 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
91781838 GTAATTCTATAAATCGAGGGTCAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
91781865 GTAATTATATAAATCGATGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
91781892 GTAATTTTTTAAATCGAGTGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
91781919 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
91781946 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
91781973 ATAATTCTGTAGATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
91782000 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
91782027 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
91782054 GTAATTTTACAAATCGAGGG
1 GTAATTCTATAAATCGAGGG
91782074 CATTTCAGTA
Statistics
Matches: 260, Mismatches: 30, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 260 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:91784075 original size:15 final size:15
Alignment explanation
Indices: 91784026--91784077 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
91784016 TAATGAGTGC
*
91784026 TCGTGGTACGAAAGG
1 TCGTGGTACGTAAGG
* * *
91784041 TCATGGTATGTGAGG
1 TCGTGGTACGTAAGG
91784056 TCGTGGTACGTAAGG
1 TCGTGGTACGTAAGG
*
91784071 GCGTGGT
1 TCGTGGT
91784078 GGACGTCGTA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.19, C:0.12, G:0.42, T:0.27
Consensus pattern (15 bp):
TCGTGGTACGTAAGG
Found at i:91787186 original size:29 final size:29
Alignment explanation
Indices: 91787142--91787319 Score: 257
Period size: 29 Copynumber: 6.1 Consensus size: 29
91787132 TGTGCTAAAT
91787142 GATGGTCGAAACCATCCCTTTTCATATTC
1 GATGGTCGAAACCATCCCTTTTCATATTC
* *
91787171 GATGGTTGAAATCATCCCTTTTCATATTC
1 GATGGTCGAAACCATCCCTTTTCATATTC
*
91787200 GATGGTCAAAACCATCCCTTTTCATATTC
1 GATGGTCGAAACCATCCCTTTTCATATTC
** *
91787229 GATGGTCGTCACCATCCCTTTTCATATCC
1 GATGGTCGAAACCATCCCTTTTCATATTC
** * *
91787258 GATGGTCGTCACCATCCCTTTTCGTATTT
1 GATGGTCGAAACCATCCCTTTTCATATTC
*
91787287 GATGGTCGAAACTATCCCTTTTCATATTC
1 GATGGTCGAAACCATCCCTTTTCATATTC
91787316 GATG
1 GATG
91787320 AGCGTTGATA
Statistics
Matches: 132, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 132 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (29 bp):
GATGGTCGAAACCATCCCTTTTCATATTC
Found at i:91789317 original size:24 final size:24
Alignment explanation
Indices: 91789304--91789349 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
91789294 TCCTTTACTC
91789304 TCCTAATCAATTTTTACTTCTAAT
1 TCCTAATCAATTTTTACTTCTAAT
*
91789328 TCCTAATC-ATCTTTGACTTCTA
1 TCCTAATCAAT-TTTTACTTCTA
91789350 TAACCCTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.26, C:0.24, G:0.02, T:0.48
Consensus pattern (24 bp):
TCCTAATCAATTTTTACTTCTAAT
Found at i:91792517 original size:5 final size:5
Alignment explanation
Indices: 91792510--91792794 Score: 561
Period size: 5 Copynumber: 57.0 Consensus size: 5
91792500 ATTGTGAATA
*
91792510 GTATA GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT
1 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT
91792560 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT
1 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT
91792610 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT
1 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT
91792660 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT
1 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT
91792710 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT
1 GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT GTATT
91792760 GTATT GTATT GTATT GTATT GTATT GTATT GTATT
1 GTATT GTATT GTATT GTATT GTATT GTATT GTATT
91792795 ATGGGTATAT
Statistics
Matches: 279, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 279 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
GTATT
Found at i:91795207 original size:36 final size:36
Alignment explanation
Indices: 91795167--91795279 Score: 90
Period size: 36 Copynumber: 3.1 Consensus size: 36
91795157 AGAAGGGTTG
91795167 TGAAACATACTTAGCTTATGTGCATTACATGAGTAT
1 TGAAACATACTTAGCTTATGTGCATTACATGAGTAT
* * * ** * *
91795203 TGAAA-GTA-TT-GCAGTTGA-GGGCATTCAAACAATTAG
1 TGAAACATACTTAGC--TT-ATGTGCATT-ACATGAGTAT
*
91795239 GGAAACATACTTAGCTTATGTGCATTACATGAGTAT
1 TGAAACATACTTAGCTTATGTGCATTACATGAGTAT
91795275 TGAAA
1 TGAAA
91795280 GTATTGTAGT
Statistics
Matches: 53, Mismatches: 16, Indels: 16
0.62 0.19 0.19
Matches are distributed among these distances:
33 2 0.04
34 2 0.04
35 10 0.19
36 25 0.47
37 10 0.19
38 2 0.04
39 2 0.04
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.32
Consensus pattern (36 bp):
TGAAACATACTTAGCTTATGTGCATTACATGAGTAT
Found at i:91795285 original size:72 final size:72
Alignment explanation
Indices: 91795168--91795309 Score: 275
Period size: 72 Copynumber: 2.0 Consensus size: 72
91795158 GAAGGGTTGT
91795168 GAAACATACTTAGCTTATGTGCATTACATGAGTATTGAAAGTATTGCAGTTGAGGGCATTCAAAC
1 GAAACATACTTAGCTTATGTGCATTACATGAGTATTGAAAGTATTGCAGTTGAGGGCATTCAAAC
91795233 AATTAGG
66 AATTAGG
*
91795240 GAAACATACTTAGCTTATGTGCATTACATGAGTATTGAAAGTATTGTAGTTGAGGGCATTCAAAC
1 GAAACATACTTAGCTTATGTGCATTACATGAGTATTGAAAGTATTGCAGTTGAGGGCATTCAAAC
91795305 AATTA
66 AATTA
91795310 AGGATTTTCC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (72 bp):
GAAACATACTTAGCTTATGTGCATTACATGAGTATTGAAAGTATTGCAGTTGAGGGCATTCAAAC
AATTAGG
Found at i:91809421 original size:24 final size:24
Alignment explanation
Indices: 91809391--91809436 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
91809381 TCAATTTTAT
91809391 AAAAATAACTAAAAATA-TATAATA
1 AAAAAT-ACTAAAAATATTATAATA
*
91809415 AAAAATAGTAAAAATATTATAA
1 AAAAATACTAAAAATATTATAA
91809437 AGTATTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (24 bp):
AAAAATACTAAAAATATTATAATA
Found at i:91813513 original size:29 final size:29
Alignment explanation
Indices: 91813468--91813554 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
91813458 AACATTTGAT
91813468 AAGTTTAGGTACCAAATTGGACAAAAAAA
1 AAGTTTAGGTACCAAATTGGACAAAAAAA
* * **
91813497 AAGTTTAGGTACTAAATTAGA-AAAAATTC
1 AAGTTTAGGTACCAAATTGGACAAAAA-AA
* * *
91813526 AAGTTTAGGTGCGAAATTGGACCAAAAAA
1 AAGTTTAGGTACCAAATTGGACAAAAAAA
91813555 CTTAGATACC
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
28 5 0.11
29 37 0.80
30 4 0.09
ACGTcount: A:0.48, C:0.09, G:0.18, T:0.24
Consensus pattern (29 bp):
AAGTTTAGGTACCAAATTGGACAAAAAAA
Found at i:91818717 original size:15 final size:15
Alignment explanation
Indices: 91818697--91818728 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
91818687 AGTGAGAGAA
91818697 AATGGATGAGAAAGT
1 AATGGATGAGAAAGT
91818712 AATGGATGAGAAAGT
1 AATGGATGAGAAAGT
91818727 AA
1 AA
91818729 GTTGAAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.31, T:0.19
Consensus pattern (15 bp):
AATGGATGAGAAAGT
Found at i:91820137 original size:2 final size:2
Alignment explanation
Indices: 91820130--91820158 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
91820120 AGCTATTGTT
91820130 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91820159 GAGATAGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91821877 original size:3 final size:3
Alignment explanation
Indices: 91821869--91821912 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
91821859 TCAAAATTCT
91821869 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
91821913 TATTGTCGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:91823713 original size:17 final size:17
Alignment explanation
Indices: 91823691--91823744 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 17
91823681 TTCAAATGGG
91823691 TTTGATTGGGTCAGGCT
1 TTTGATTGGGTCAGGCT
*
91823708 TTTGA-T-GGTC---CC
1 TTTGATTGGGTCAGGCT
91823720 TTTGATTGGGTCAGGCT
1 TTTGATTGGGTCAGGCT
91823737 TTTGATTG
1 TTTGATTG
91823745 TGGGACCATA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
12 6 0.20
13 1 0.03
14 4 0.13
15 4 0.13
16 1 0.03
17 14 0.47
ACGTcount: A:0.11, C:0.13, G:0.31, T:0.44
Consensus pattern (17 bp):
TTTGATTGGGTCAGGCT
Found at i:91824000 original size:25 final size:25
Alignment explanation
Indices: 91823969--91824029 Score: 122
Period size: 25 Copynumber: 2.4 Consensus size: 25
91823959 TGACTCCTAT
91823969 TTTCAGTTAAATTTGAGAAATAATC
1 TTTCAGTTAAATTTGAGAAATAATC
91823994 TTTCAGTTAAATTTGAGAAATAATC
1 TTTCAGTTAAATTTGAGAAATAATC
91824019 TTTCAGTTAAA
1 TTTCAGTTAAA
91824030 CTGTGTTTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.41
Consensus pattern (25 bp):
TTTCAGTTAAATTTGAGAAATAATC
Found at i:91826645 original size:29 final size:31
Alignment explanation
Indices: 91826604--91826679 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 31
91826594 ACAAAAACAA
91826604 ATCAT-AATCATAT-AT-CATACTTACATAT
1 ATCATAAATCATATGATACATACTTACATAT
91826632 ATCATAAATCATATGGCATACATACTTACATAT
1 ATCATAAATCATAT-G-ATACATACTTACATAT
*
91826665 TTCATACAAATCATA
1 ATCAT--AAATCATA
91826680 ACATAGCACA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
28 5 0.12
29 8 0.20
32 2 0.05
33 17 0.43
35 8 0.20
ACGTcount: A:0.43, C:0.18, G:0.03, T:0.36
Consensus pattern (31 bp):
ATCATAAATCATATGATACATACTTACATAT
Found at i:91831701 original size:21 final size:21
Alignment explanation
Indices: 91831675--91831716 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
91831665 CTCAATTGCA
91831675 GGTATGTATTATATCTATAAC
1 GGTATGTATTATATCTATAAC
91831696 GGTATGTATTATATCTATAAC
1 GGTATGTATTATATCTATAAC
91831717 CCAGTCTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (21 bp):
GGTATGTATTATATCTATAAC
Found at i:91834568 original size:18 final size:19
Alignment explanation
Indices: 91834535--91834570 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
91834525 TTTTTTACTA
91834535 TAAACATTATTTATATATG
1 TAAACATTATTTATATATG
*
91834554 TAAAGATTA-TTATATAT
1 TAAACATTATTTATATAT
91834571 TATATCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (19 bp):
TAAACATTATTTATATATG
Found at i:91834583 original size:20 final size:19
Alignment explanation
Indices: 91834560--91834598 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
91834550 TATGTAAAGA
91834560 TTATTATATATTATATCATT
1 TTATTATATATTAT-TCATT
*
91834580 TTATTATTTATTATTCATT
1 TTATTATATATTATTCATT
91834599 AATTATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATTATATATTATTCATT
Found at i:91840371 original size:3 final size:3
Alignment explanation
Indices: 91840330--91840431 Score: 61
Period size: 3 Copynumber: 33.0 Consensus size: 3
91840320 TTTTTTACTA
*
91840330 TAT TA- TAT TAT T-T TA- TAT T-C TAT TAT ATAT T-T ATAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT -TAT TAT TAT
* *
91840372 TACA TAT TATT TAT TAT GTAT TATT TAT ATAT ATAT TAT TAT TTT TAT
1 TA-T TAT TA-T TAT TAT -TAT TA-T TAT -TAT -TAT TAT TAT TAT TAT
*
91840420 TAT TAT TTT TAT
1 TAT TAT TAT TAT
91840432 ATTTAAATAT
Statistics
Matches: 79, Mismatches: 8, Indels: 24
0.71 0.07 0.22
Matches are distributed among these distances:
2 8 0.10
3 49 0.62
4 22 0.28
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:91840387 original size:14 final size:14
Alignment explanation
Indices: 91840350--91840433 Score: 77
Period size: 14 Copynumber: 6.1 Consensus size: 14
91840340 TTTTATATTC
*
91840350 TATTATATATT-TA
1 TATTATTTATTATA
*
91840363 TATTA-TTATTACA
1 TATTATTTATTATA
*
91840376 TATTATTTATTATG
1 TATTATTTATTATA
91840390 TATTATTTATATATA
1 TATTATTTAT-TATA
*
91840405 TATTA-TTATTTTTA
1 TATTATTTA-TTATA
91840419 TTATTATTT-TTATA
1 -TATTATTTATTATA
91840433 T
1 T
91840434 TTAAATATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
12 4 0.07
13 12 0.21
14 26 0.45
15 14 0.24
16 2 0.03
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (14 bp):
TATTATTTATTATA
Found at i:91840399 original size:18 final size:17
Alignment explanation
Indices: 91840350--91840431 Score: 73
Period size: 18 Copynumber: 4.8 Consensus size: 17
91840340 TTTTATATTC
91840350 TATTATATATTTATATTAT
1 TATTAT-TATTTAT-TTAT
*
91840369 TATTA-CATATTATTTAT
1 TATTATTAT-TTATTTAT
*
91840386 TATGTATTATTTATATAT
1 TAT-TATTATTTATTTAT
91840404 ATATTATTA-TT-TTTAT
1 -TATTATTATTTATTTAT
91840420 TATTATT-TTTAT
1 TATTATTATTTAT
91840432 ATTTAAATAT
Statistics
Matches: 53, Mismatches: 4, Indels: 15
0.74 0.06 0.21
Matches are distributed among these distances:
15 9 0.17
16 5 0.09
17 11 0.21
18 18 0.34
19 10 0.19
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (17 bp):
TATTATTATTTATTTAT
Found at i:91840408 original size:48 final size:47
Alignment explanation
Indices: 91840324--91840421 Score: 114
Period size: 48 Copynumber: 2.1 Consensus size: 47
91840314 TTCATGTTTT
91840324 TTACTATATTATATTATTTTATATTCTATTATATATT-TATATTATTA
1 TTACTATATTATATTATTTTATATTCTATTATATATTAT-TATTATTA
*
91840371 TTAC-ATATTAT-TTATTATGTATTATT-TATATATATATTATTATTTTTA
1 TTACTATATTATATTATT-T-TA-TATTCTAT-TATATATTATTATTATTA
91840419 TTA
1 TTA
91840422 TTATTTTTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
45 5 0.11
46 8 0.18
47 9 0.20
48 22 0.49
49 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (47 bp):
TTACTATATTATATTATTTTATATTCTATTATATATTATTATTATTA
Found at i:91840436 original size:18 final size:18
Alignment explanation
Indices: 91840321--91840436 Score: 70
Period size: 18 Copynumber: 6.7 Consensus size: 18
91840311 ATATTCATGT
91840321 TTTTTACTATATTA-TATTA
1 TTTTTA-TAT-TTATTATTA
91840340 -TTTTATATTCTATTA-TA
1 TTTTTATATT-TATTATTA
*
91840357 TATTTATA-TTATTATTA
1 TTTTTATATTTATTATTA
** *
91840374 CATAT-TATTTATTATGTA
1 TTTTTATATTTATTAT-TA
91840392 TTATTTATA--TA-TA-TA
1 TT-TTTATATTTATTATTA
* *
91840407 TTATTATTTTTATTATTA
1 TTTTTATATTTATTATTA
91840425 TTTTTATATTTA
1 TTTTTATATTTA
91840437 AATATTAAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 25
0.68 0.09 0.23
Matches are distributed among these distances:
14 4 0.05
15 4 0.05
16 10 0.13
17 24 0.32
18 29 0.39
19 2 0.03
20 2 0.03
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.65
Consensus pattern (18 bp):
TTTTTATATTTATTATTA
Found at i:91840442 original size:34 final size:35
Alignment explanation
Indices: 91840357--91840443 Score: 90
Period size: 34 Copynumber: 2.5 Consensus size: 35
91840347 TTCTATTATA
* * *
91840357 TATTTATATTATTATTACATATTATTTATTATGTAT
1 TATTTATATAAATATTA-TTATTATTTATTATGTAT
*
91840393 TATTTATATATATATTATTATT-TTTATTAT-TAT
1 TATTTATATAAATATTATTATTATTTATTATGTAT
91840426 T-TTTATATTTAAATATTA
1 TATTTATA--TAAATATTA
91840444 AATCGATGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
32 6 0.14
33 4 0.09
34 16 0.36
35 4 0.09
36 14 0.32
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (35 bp):
TATTTATATAAATATTATTATTATTTATTATGTAT
Found at i:91846289 original size:86 final size:85
Alignment explanation
Indices: 91846199--91846653 Score: 277
Period size: 87 Copynumber: 5.2 Consensus size: 85
91846189 ATGTGTTTAT
*
91846199 ACTGAAACAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAACAGATACATAGCAG
1 ACTGAAACAGATCCAAGATAA-AGATCTGGCATCTCTATTTCGACGGAGAACAGATACATAGCAG
91846264 ATCTAACCTTCAGATGATTTC
65 ATCTAACCTTCAGATGATTTC
* * * * * * *
91846285 ACTGAAGCAGATCCAAGAT---GATTTGGCATCCTTGTGTTTAC-AAGGA-ACAAATCGAAGACA
1 ACTGAAACAGATCCAAGATAAAGATCTGGCAT-C-TCTATTT-CGACGGAGA-ACA--G-ATACA
* * * * * *
91846345 TAACAGATTTGACTTTCGGATG-TTACC
59 TAGCAGATCTAACCTTCAGATGATT-TC
** * *
91846372 ACACCAAAGCAGATCCAAGATAACAGATCTAGCATCTCTATTTCGACGTAGAACAGATACATAGC
1 AC-TGAAA-CAGATCCAAGATAA-AGATCTGGCATCTCTATTTCGACGGAGAACAGATACATAGC
91846437 AGATCTAACCTTCAGATGATTTC
63 AGATCTAACCTTCAGATGATTTC
* * * * * * * *
91846460 ACTGAAGCAGATACAAGAT---GATTTGGCATCTTTGTGTTTAC-AAGGA-ACAAATCGAAGACA
1 ACTGAAACAGATCCAAGATAAAGATCTGGCATC--TCTATTT-CGACGGAGA-ACA--G-ATACA
* * * * *
91846520 TAGCAGATTTGACTTTCGGATG-TTCCC
59 TAGCAGATCTAACCTTCAGATGATT-TC
** * * * *
91846547 ACACCAAAGTAGATCCAAGATAATAGATCTAGCATCTCTATTTCGACGAAGAACAGATCCATAGC
1 AC-TGAAA-CAGATCCAAGATAA-AGATCTGGCATCTCTATTTCGACGGAGAACAGATACATAGC
91846612 AGATCTAACCTTCAGATGATTTC
63 AGATCTAACCTTCAGATGATTTC
*
91846635 ACTGAAGCAGATCCAAGAT
1 ACTGAAACAGATCCAAGAT
91846654 GATTTGGCAT
Statistics
Matches: 264, Mismatches: 71, Indels: 68
0.66 0.18 0.17
Matches are distributed among these distances:
82 18 0.07
83 3 0.01
84 20 0.08
85 2 0.01
86 46 0.17
87 53 0.20
88 52 0.20
89 28 0.11
90 2 0.01
91 20 0.08
92 3 0.01
93 17 0.06
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (85 bp):
ACTGAAACAGATCCAAGATAAAGATCTGGCATCTCTATTTCGACGGAGAACAGATACATAGCAGA
TCTAACCTTCAGATGATTTC
Found at i:91846497 original size:175 final size:175
Alignment explanation
Indices: 91846206--91846711 Score: 877
Period size: 175 Copynumber: 2.9 Consensus size: 175
91846196 TATACTGAAA
* * *
91846206 CAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAACAGATACATAGCAGATCTAAC
1 CAGATCCAAGATAACAGATCTAGCATCTCTATTTCGACGAAGAACAGATACATAGCAGATCTAAC
91846271 CTTCAGATGATTTCACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAA
66 CTTCAGATGATTTCACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAA
*
91846336 TCGAAGACATAACAGATTTGACTTTCGGATGTTACCACACCAAAG
131 TCGAAGACATAGCAGATTTGACTTTCGGATGTTACCACACCAAAG
*
91846381 CAGATCCAAGATAACAGATCTAGCATCTCTATTTCGACGTAGAACAGATACATAGCAGATCTAAC
1 CAGATCCAAGATAACAGATCTAGCATCTCTATTTCGACGAAGAACAGATACATAGCAGATCTAAC
* *
91846446 CTTCAGATGATTTCACTGAAGCAGATACAAGATGATTTGGCATCTTTGTGTTTACAAGGAACAAA
66 CTTCAGATGATTTCACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAA
*
91846511 TCGAAGACATAGCAGATTTGACTTTCGGATGTTCCCACACCAAAG
131 TCGAAGACATAGCAGATTTGACTTTCGGATGTTACCACACCAAAG
* * *
91846556 TAGATCCAAGATAATAGATCTAGCATCTCTATTTCGACGAAGAACAGATCCATAGCAGATCTAAC
1 CAGATCCAAGATAACAGATCTAGCATCTCTATTTCGACGAAGAACAGATACATAGCAGATCTAAC
* *
91846621 CTTCAGATGATTTCACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAA
66 CTTCAGATGATTTCACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAA
* *
91846686 TCGAAGACACAGCAGATTTGGCTTTC
131 TCGAAGACATAGCAGATTTGACTTTC
91846712 ACGTGTTTAC
Statistics
Matches: 314, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
175 314 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (175 bp):
CAGATCCAAGATAACAGATCTAGCATCTCTATTTCGACGAAGAACAGATACATAGCAGATCTAAC
CTTCAGATGATTTCACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAA
TCGAAGACATAGCAGATTTGACTTTCGGATGTTACCACACCAAAG
Found at i:91848643 original size:3 final size:3
Alignment explanation
Indices: 91848602--91848715 Score: 64
Period size: 3 Copynumber: 38.0 Consensus size: 3
91848592 TTTTTTACTA
*
91848602 TAT TA- TAT TAT T-T TA- TAT T-C TAT TAT ATAT T-T ATAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT -TAT TAT TAT
* *
91848644 TACA TAT TATT TAT TAT GTAT TAT TTT TA- TAT ATAT TAT TAT T-T ATAT
1 TA-T TAT TA-T TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT -TAT
*
91848692 TAT TAT T-T ATAT TAT TAT TTT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT
91848716 ATTTAAATAT
Statistics
Matches: 87, Mismatches: 8, Indels: 32
0.69 0.06 0.25
Matches are distributed among these distances:
2 12 0.14
3 58 0.67
4 17 0.20
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:91848644 original size:12 final size:12
Alignment explanation
Indices: 91848622--91848711 Score: 95
Period size: 12 Copynumber: 7.9 Consensus size: 12
91848612 TTTTATATTC
91848622 TATTATATATTTA
1 TATTAT-TATTTA
91848635 TATTATTA-TTA
1 TATTATTATTTA
*
91848646 CA-TATTA-TT-
1 TATTATTATTTA
91848655 TATTATGTA-TTA
1 TATTAT-TATTTA
*
91848667 T-TT-TTATATA
1 TATTATTATTTA
91848677 TATTATTATTTA
1 TATTATTATTTA
91848689 TATTATTATTTA
1 TATTATTATTTA
91848701 TATTATTATTT
1 TATTATTATTT
91848712 TTATATTTAA
Statistics
Matches: 67, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
9 3 0.04
10 14 0.21
11 12 0.18
12 32 0.48
13 6 0.09
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (12 bp):
TATTATTATTTA
Found at i:91848697 original size:24 final size:24
Alignment explanation
Indices: 91848604--91848711 Score: 90
Period size: 24 Copynumber: 4.1 Consensus size: 24
91848594 TTTTACTATA
*
91848604 TTATATTATTTTATATTCTATTATATAT
1 TTATATTA--TTATA-TATATTAT-TAT
91848632 TTATATTATTATTACATATTATTTATTAT
1 TTATATTATTA-T--ATA-TA-TTATTAT
* *
91848661 GTATTATTTTTATATATATTATTAT
1 TTA-TATTATTATATATATTATTAT
*
91848686 TTATATTATTATTTATATTATTAT
1 TTATATTATTATATATATTATTAT
91848710 TT
1 TT
91848712 TTATATTTAA
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
24 21 0.31
25 9 0.13
26 5 0.07
27 4 0.06
28 9 0.13
29 9 0.13
30 11 0.16
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (24 bp):
TTATATTATTATATATATTATTAT
Found at i:91848726 original size:24 final size:23
Alignment explanation
Indices: 91848594--91848726 Score: 76
Period size: 24 Copynumber: 5.5 Consensus size: 23
91848584 TATTCATGTT
91848594 TTTTACTATAT-TATATTATTTTATA
1 TTTTA-TATATAT-TATTATTTT-TA
* *
91848619 TTCTAT-TATA-TATT-TATATTA
1 TTTTATATATATTATTAT-TTTTA
* *
91848640 TTATTACATATTATTTATTATGTATTA
1 TT-TTATATA-TA-TTATTAT-TTTTA
*
91848667 TTTTTATATATATTATTATTTATA
1 -TTTTATATATATTATTATTTTTA
*
91848691 TTATTATTTATATTATTATTTTTA
1 TT-TTATATATATTATTATTTTTA
*
91848715 TATTTAAATATA
1 T-TTTATATATA
91848727 AAATTGATGT
Statistics
Matches: 85, Mismatches: 12, Indels: 23
0.71 0.10 0.19
Matches are distributed among these distances:
21 5 0.06
22 8 0.09
23 7 0.08
24 33 0.39
25 12 0.14
26 6 0.07
27 12 0.14
28 2 0.02
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (23 bp):
TTTTATATATATTATTATTTTTA
Found at i:91849078 original size:28 final size:26
Alignment explanation
Indices: 91849014--91849077 Score: 119
Period size: 26 Copynumber: 2.4 Consensus size: 26
91849004 TAATTTGATG
91849014 ATTGTATTTTTTGTATATTGATACTAT
1 ATTGT-TTTTTTGTATATTGATACTAT
91849041 ATTGTTTTTTTGTATATTGATACTAT
1 ATTGTTTTTTTGTATATTGATACTAT
91849067 ATTGTTTTTTT
1 ATTGTTTTTTT
91849078 TGTTGTTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 32 0.86
27 5 0.14
ACGTcount: A:0.22, C:0.03, G:0.11, T:0.64
Consensus pattern (26 bp):
ATTGTTTTTTTGTATATTGATACTAT
Found at i:91852055 original size:21 final size:18
Alignment explanation
Indices: 91852013--91852047 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
91852003 TTTAACAAAT
91852013 CACTTCTCTTTTACATAC
1 CACTTCTCTTTTACATAC
91852031 CACTTCTCTTTTACATA
1 CACTTCTCTTTTACATA
91852048 TCACCACTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (18 bp):
CACTTCTCTTTTACATAC
Found at i:91852582 original size:26 final size:26
Alignment explanation
Indices: 91852553--91852604 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
91852543 GATTAATAAG
91852553 ATTGATTGTTTTGGATTTTACTCAAC
1 ATTGATTGTTTTGGATTTTACTCAAC
91852579 ATTGATTGTTTTGGATTTTACTCAAC
1 ATTGATTGTTTTGGATTTTACTCAAC
91852605 TTTCTCATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (26 bp):
ATTGATTGTTTTGGATTTTACTCAAC
Found at i:91856421 original size:21 final size:21
Alignment explanation
Indices: 91856395--91856442 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
91856385 TTGTCGACTC
91856395 TAGTCCCAAAATTAGGAAACT
1 TAGTCCCAAAATTAGGAAACT
91856416 TAGTCCCAAAATTAGGAAACT
1 TAGTCCCAAAATTAGGAAACT
91856437 TAGTCC
1 TAGTCC
91856443 TAAACTTGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (21 bp):
TAGTCCCAAAATTAGGAAACT
Found at i:91857655 original size:12 final size:11
Alignment explanation
Indices: 91857634--91857660 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
91857624 GTCTATCACC
91857634 AAAAATAAAAA
1 AAAAATAAAAA
91857645 AAAAATAAAAA
1 AAAAATAAAAA
91857656 AAAAA
1 AAAAA
91857661 GAAACGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (11 bp):
AAAAATAAAAA
Found at i:91861707 original size:33 final size:32
Alignment explanation
Indices: 91861644--91861707 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
91861634 AAAACCAAAC
* * *
91861644 ATTTAATCTAATTAACAGAAACTATGCAAAAT
1 ATTTAAACTAATTAACAAAAACTATACAAAAT
91861676 ATTTAAACTAATTAACTAAAAACTCA-ACAAAA
1 ATTTAAACTAATTAAC-AAAAACT-ATACAAAA
91861708 CCCAAAACCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 15 0.56
33 11 0.41
34 1 0.04
ACGTcount: A:0.55, C:0.14, G:0.03, T:0.28
Consensus pattern (32 bp):
ATTTAAACTAATTAACAAAAACTATACAAAAT
Found at i:91866321 original size:5 final size:5
Alignment explanation
Indices: 91866311--91866351 Score: 68
Period size: 5 Copynumber: 8.6 Consensus size: 5
91866301 TTGTGTGTTC
91866311 TTTAT TTTA- TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
91866352 TTAGTAAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 8 0.24
5 26 0.76
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:91866325 original size:9 final size:9
Alignment explanation
Indices: 91866311--91866350 Score: 71
Period size: 9 Copynumber: 4.3 Consensus size: 9
91866301 TTGTGTGTTC
91866311 TTTATTTTA
1 TTTATTTTA
91866320 TTTATTTTA
1 TTTATTTTA
91866329 TTTATTTTA
1 TTTATTTTA
91866338 TTTTATTTTA
1 -TTTATTTTA
91866348 TTT
1 TTT
91866351 TTTAGTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
9 21 0.70
10 9 0.30
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTATTTTA
Found at i:91866330 original size:14 final size:14
Alignment explanation
Indices: 91866311--91866350 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
91866301 TTGTGTGTTC
91866311 TTTATTTTATTTAT
1 TTTATTTTATTTAT
91866325 TTTA-TTTATTTTAT
1 TTTATTTTA-TTTAT
91866339 TTTATTTTATTT
1 TTTATTTTATTT
91866351 TTTAGTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.17
14 16 0.67
15 4 0.17
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTATTTTATTTAT
Found at i:91870775 original size:5 final size:5
Alignment explanation
Indices: 91870765--91870796 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
91870755 TTGTGTTTTC
91870765 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
91870797 TCAACAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:91870777 original size:9 final size:9
Alignment explanation
Indices: 91870760--91870795 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
91870750 AAAATTTGTG
*
91870760 TTTTCTTTA
1 TTTTATTTA
91870769 TTTTATTTA
1 TTTTATTTA
91870778 TTTTATTTTA
1 TTTTA-TTTA
91870788 TTTTATTT
1 TTTTATTT
91870796 TTCAACAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTATTTA
Found at i:91873451 original size:12 final size:12
Alignment explanation
Indices: 91873434--91873470 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
91873424 TTGGTTAACT
91873434 TTCTAGAAATTC
1 TTCTAGAAATTC
91873446 TTCTAGAAATTC
1 TTCTAGAAATTC
91873458 TTCTAGAAATTC
1 TTCTAGAAATTC
91873470 T
1 T
91873471 ATCACGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.43
Consensus pattern (12 bp):
TTCTAGAAATTC
Found at i:91875728 original size:13 final size:12
Alignment explanation
Indices: 91875698--91875726 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
91875688 TCCCCTACCA
91875698 TTTTTTCCTTCT
1 TTTTTTCCTTCT
91875710 TTTTTTCCTT-T
1 TTTTTTCCTTCT
91875721 TTTTTT
1 TTTTTT
91875727 TTTTTGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTTCCTTCT
Found at i:91879871 original size:18 final size:18
Alignment explanation
Indices: 91879839--91879876 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
91879829 ATTACAAAAT
*
91879839 AATTTAAAATAATTTTTA
1 AATTTAAAATAATTTATA
91879857 AATTTCAAAAT-ATTTATA
1 AATTT-AAAATAATTTATA
91879875 AA
1 AA
91879877 AATTCTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (18 bp):
AATTTAAAATAATTTATA
Found at i:91880172 original size:26 final size:25
Alignment explanation
Indices: 91880143--91880194 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
91880133 ATTTCACTCG
* * *
91880143 ATTTTATTTGATTCGACTCGACTTAA
1 ATTTCATTTGACTCAACTCGA-TTAA
*
91880169 ATTTCATTTTACTCAACTCGATTAA
1 ATTTCATTTGACTCAACTCGATTAA
91880194 A
1 A
91880195 AAAATTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (25 bp):
ATTTCATTTGACTCAACTCGATTAA
Found at i:91889187 original size:18 final size:18
Alignment explanation
Indices: 91889164--91889198 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91889154 TAGGTTTCAA
*
91889164 AAAATGGAAACGGAAATG
1 AAAATGAAAACGGAAATG
*
91889182 AAAATGAAAATGGAAAT
1 AAAATGAAAACGGAAAT
91889199 AATCCATTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.03, G:0.23, T:0.14
Consensus pattern (18 bp):
AAAATGAAAACGGAAATG
Found at i:91889391 original size:26 final size:25
Alignment explanation
Indices: 91889347--91889418 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 25
91889337 TATTTTCTCG
*
91889347 AAATTTTCTAGGGGAAAAATCATCA
1 AAATTTTCTAGGGGTAAAATCATCA
* **
91889372 AAATTTTACTAGAGGTAAAATTGTCA
1 AAATTTT-CTAGGGGTAAAATCATCA
*
91889398 AATTTTTGCTAGGGGTAAAAT
1 AAATTTT-CTAGGGGTAAAAT
91889419 AGGGATGAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 7 0.18
26 32 0.82
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.33
Consensus pattern (25 bp):
AAATTTTCTAGGGGTAAAATCATCA
Found at i:91891028 original size:27 final size:27
Alignment explanation
Indices: 91890977--91891029 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
91890967 TACTAGTTTC
* *
91890977 TTTTATAGTAAAATTGTCGTCACTTTA
1 TTTTATAGTAAAATCGTCATCACTTTA
*
91891004 TTTTATAGTAAAATCGTCATTACTTT
1 TTTTATAGTAAAATCGTCATCACTTT
91891030 GATGGAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.49
Consensus pattern (27 bp):
TTTTATAGTAAAATCGTCATCACTTTA
Found at i:91891468 original size:22 final size:21
Alignment explanation
Indices: 91891418--91891469 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
91891408 GTCAAAAAGT
*
91891418 ATAAAATTTTATTTTCTTAGA
1 ATAAAATTTTATTTTCTTAAA
*
91891439 ATTAAATTTTATTTT-TTGAAA
1 ATAAAATTTTATTTTCTT-AAA
91891460 ATAATAATTT
1 ATAA-AATTT
91891470 CTACCGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 2 0.08
21 19 0.73
22 5 0.19
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (21 bp):
ATAAAATTTTATTTTCTTAAA
Found at i:91900853 original size:46 final size:46
Alignment explanation
Indices: 91900786--91900877 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
91900776 GGAGAGTATG
91900786 TATCTCCATAATTAGTTTTGAGCTTTGTGAAAATTCTTTTGCTACA
1 TATCTCCATAATTAGTTTTGAGCTTTGTGAAAATTCTTTTGCTACA
91900832 TATCTCCATAATTAGTTTTGAGCTTTGTGAAAATTCTTTTGCTACA
1 TATCTCCATAATTAGTTTTGAGCTTTGTGAAAATTCTTTTGCTACA
91900878 AGTCGTGCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (46 bp):
TATCTCCATAATTAGTTTTGAGCTTTGTGAAAATTCTTTTGCTACA
Found at i:91902139 original size:20 final size:20
Alignment explanation
Indices: 91902097--91902137 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
91902087 TACAACATAA
*
91902097 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
*
91902117 TTCAATTT-TTATTCAATAT
1 TTCAATTTCATATTCAATAT
91902136 TT
1 TT
91902138 TCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:91902929 original size:13 final size:13
Alignment explanation
Indices: 91902911--91902935 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91902901 AACTAGCTTC
91902911 ATAAATATTTTTA
1 ATAAATATTTTTA
91902924 ATAAATATTTTT
1 ATAAATATTTTT
91902936 GAGTCCGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATAAATATTTTTA
Found at i:91906133 original size:17 final size:17
Alignment explanation
Indices: 91906111--91906143 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
91906101 TCTCACTTTA
91906111 TAAGTGAATTTAGGGAG
1 TAAGTGAATTTAGGGAG
91906128 TAAGTGAATTTAGGGA
1 TAAGTGAATTTAGGGA
91906144 TGGTTTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.33, T:0.30
Consensus pattern (17 bp):
TAAGTGAATTTAGGGAG
Found at i:91911872 original size:57 final size:57
Alignment explanation
Indices: 91911794--91911909 Score: 169
Period size: 57 Copynumber: 2.0 Consensus size: 57
91911784 TCTAAACAAC
* * *
91911794 ATAAATTTAACTTTAAAAAAAATTTAATTTCATTGTTTGAGACCTTTGTTAGAAGAG
1 ATAAATTTAACTTTAAAAAAAAATCAATTTCATTGTTTGAGACCTTTCTTAGAAGAG
* * **
91911851 ATAAGTTTAACTTTGAAAAAAAATCAATTTCATTGTTTGAGATTTTTCTTAGAAGAG
1 ATAAATTTAACTTTAAAAAAAAATCAATTTCATTGTTTGAGACCTTTCTTAGAAGAG
91911908 AT
1 AT
91911910 TTGAAAAGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.41
Consensus pattern (57 bp):
ATAAATTTAACTTTAAAAAAAAATCAATTTCATTGTTTGAGACCTTTCTTAGAAGAG
Found at i:91914865 original size:24 final size:24
Alignment explanation
Indices: 91914837--91914888 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
91914827 TTTCTAGAAG
* *
91914837 ATTTAGTATTTATGAATATAATAT
1 ATTTAGCATTTATGAACATAATAT
* *
91914861 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAACATAATAT
91914885 ATTT
1 ATTT
91914889 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:91915390 original size:26 final size:26
Alignment explanation
Indices: 91915361--91915468 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
91915351 TGGTACAAAT
91915361 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
91915387 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
91915413 TGATAACGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
91915439 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91915465 TGAT
1 TGAT
91915469 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:91917145 original size:54 final size:53
Alignment explanation
Indices: 91917063--91917206 Score: 207
Period size: 54 Copynumber: 2.7 Consensus size: 53
91917053 TGGAGGAAGC
*
91917063 GTCCTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCA-CATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
91917117 GTCCTAGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * *
91917171 GTTCTGGTGGCTCTGCCACAATATCTATATCTGGTG
1 GTCCTGGTGGCTATGCCACATTATCT-GATCTGGTG
91917207 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 6 0.07
54 75 0.93
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
GTCCTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:91917200 original size:32 final size:27
Alignment explanation
Indices: 91917066--91917206 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
91917056 AGGAAGCGTC
* *
91917066 CTGGTGGCTATGCCATA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
91917093 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACATATATCTGAT
* *
91917119 CCTAGTGGCTATGCCACGAT-TATCTGAT
1 -CTGGTGGCTCTGCCAC-ATATATCTGAT
*
91917147 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
91917174 CTGGTGGCTCTGCCACA-ATATCTATAT
1 CTGGTGGCTCTGCCACATATATCT-GAT
91917201 CTGGTG
1 CTGGTG
91917207 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
26 9 0.09
27 86 0.87
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:91922870 original size:13 final size:13
Alignment explanation
Indices: 91922850--91922881 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
91922840 TATAAATAGA
91922850 AGAAATTTTTAAC
1 AGAAATTTTTAAC
*
91922863 ATAAATTTTTAAC
1 AGAAATTTTTAAC
91922876 AGAAAT
1 AGAAAT
91922882 GACTAATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (13 bp):
AGAAATTTTTAAC
Found at i:91923720 original size:19 final size:19
Alignment explanation
Indices: 91923698--91923734 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
91923688 TTTGATAATT
91923698 TAATTTAATTTTTTATTTG
1 TAATTTAATTTTTTATTTG
91923717 TAATTTAATTTTTTATTT
1 TAATTTAATTTTTTATTT
91923735 AATAAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (19 bp):
TAATTTAATTTTTTATTTG
Found at i:91937059 original size:41 final size:41
Alignment explanation
Indices: 91937013--91937094 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
91937003 TTGTTGACTT
* *
91937013 CATTTTATTAGGTTAAAGAATAAACAAATAAATTTAAATTA
1 CATTTTATTAGGTTAAAAAATAAACAAACAAATTTAAATTA
91937054 CATTTTATTAGGTTAAAAAATAAACAAACAAATTTAAATTA
1 CATTTTATTAGGTTAAAAAATAAACAAACAAATTTAAATTA
91937095 TTTCCATCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (41 bp):
CATTTTATTAGGTTAAAAAATAAACAAACAAATTTAAATTA
Found at i:91937111 original size:41 final size:40
Alignment explanation
Indices: 91937014--91937121 Score: 119
Period size: 41 Copynumber: 2.6 Consensus size: 40
91937004 TGTTGACTTC
* * * *
91937014 ATTTTATTAGGTTAAAGAATAAACAAATAAATTTAAATTA
1 ATTTCATTAGATTAAAAAATAAACAAACAAATTTAAATTA
* *
91937054 CATTTTATTAGGTTAAAAAATAAACAAACAAATTTAAATT-
1 -ATTTCATTAGATTAAAAAATAAACAAACAAATTTAAATTA
91937094 ATTTCCATCTAGATTAAAAAAATAAACA
1 ATTT-CAT-TAGATT-AAAAAATAAACA
91937122 TACTTGGGAA
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
39 4 0.07
40 2 0.03
41 42 0.70
42 12 0.20
ACGTcount: A:0.53, C:0.07, G:0.06, T:0.34
Consensus pattern (40 bp):
ATTTCATTAGATTAAAAAATAAACAAACAAATTTAAATTA
Found at i:91938607 original size:25 final size:25
Alignment explanation
Indices: 91938578--91938628 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
91938568 ATTCTACCAC
91938578 AGTGTTAGTAAAAACCTTACTTTCA
1 AGTGTTAGTAAAAACCTTACTTTCA
*
91938603 AGTGTTAGTAAAAATCTTACTTTCA
1 AGTGTTAGTAAAAACCTTACTTTCA
91938628 A
1 A
91938629 AACTGAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (25 bp):
AGTGTTAGTAAAAACCTTACTTTCA
Found at i:91943900 original size:14 final size:16
Alignment explanation
Indices: 91943875--91943906 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
91943865 AAAAGACAAC
91943875 AATTTCACACA-TATA
1 AATTTCACACATTATA
91943890 AATTT-ACACATTATA
1 AATTTCACACATTATA
91943905 AA
1 AA
91943907 CATAGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (16 bp):
AATTTCACACATTATA
Found at i:91953368 original size:26 final size:26
Alignment explanation
Indices: 91953339--91953395 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
91953329 ATCCTCTCTC
* *
91953339 GAGCCATTGAA-CACGAAACTCGCAAA
1 GAGCCATT-AATCAAGAAACTCACAAA
*
91953365 GAGCCATTAATCAAGAAGCTCACAAA
1 GAGCCATTAATCAAGAAACTCACAAA
91953391 GAGCC
1 GAGCC
91953396 TTTCAGAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 2 0.07
26 25 0.93
ACGTcount: A:0.42, C:0.26, G:0.19, T:0.12
Consensus pattern (26 bp):
GAGCCATTAATCAAGAAACTCACAAA
Found at i:91963407 original size:13 final size:13
Alignment explanation
Indices: 91963386--91963419 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
91963376 CCAAACGTTA
91963386 AAATTTTCGAACG
1 AAATTTTCGAACG
* *
91963399 AATTTTTCGAGCG
1 AAATTTTCGAACG
91963412 AAATTTTC
1 AAATTTTC
91963420 AATAAACCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
AAATTTTCGAACG
Found at i:91965610 original size:22 final size:22
Alignment explanation
Indices: 91965585--91965633 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
91965575 TTTTAATATT
*
91965585 ATTTT-CTCCCTATTTTGCTACC
1 ATTTTACT-CCTATGTTGCTACC
* *
91965607 ATTTTACTCTTATGTTGCTACT
1 ATTTTACTCCTATGTTGCTACC
91965629 ATTTT
1 ATTTT
91965634 GTTGTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.16, C:0.22, G:0.06, T:0.55
Consensus pattern (22 bp):
ATTTTACTCCTATGTTGCTACC
Found at i:91965704 original size:30 final size:30
Alignment explanation
Indices: 91965670--91965732 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
91965660 ACTTATTTTA
*
91965670 TTGTTAATTTTGTTATTATTTTAAAGATAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
91965700 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
91965730 TTG
1 TTG
91965733 CTTGTTAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:91970952 original size:25 final size:26
Alignment explanation
Indices: 91970911--91970959 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
91970901 CCTCATCCCT
91970911 ATTTTACCTCTAGTAAAATTTTGACG
1 ATTTTACCTCTAGTAAAATTTTGACG
91970937 ATTTTACC-CTAGTAAAATTTTGA
1 ATTTTACCTCTAGTAAAATTTTGA
91970960 GAAAGTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (26 bp):
ATTTTACCTCTAGTAAAATTTTGACG
Done.