Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 278 of 343
Found at i:92241762 original size:49 final size:49
Alignment explanation
Indices: 92241706--92241878 Score: 172
Period size: 49 Copynumber: 3.6 Consensus size: 49
92241696 TGTTGTGTGT
* *
92241706 CAGTGTAAGACCTGTCTAGGACATGGCATCAACAC-CGATATATGAAAGC
1 CAGTGTAAGACCTGTATGGGACATGGCATCAAC-CTCGATATATGAAAGC
* * * *
92241755 CAGTGTAAGACTTTTATGGGACATGGCATCAACCTTGATATATGAAAGT
1 CAGTGTAAGACCTGTATGGGACATGGCATCAACCTCGATATATGAAAGC
* * * ** * **
92241804 CAGTGTAAGACCTGTTTGGGACACGGCATC-GCCTTTA-ATGTGCTAGC
1 CAGTGTAAGACCTGTATGGGACATGGCATCAACCTCGATATATGAAAGC
*
92241851 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTATGGGACATGGC
92241879 GTCGGCATTT
Statistics
Matches: 104, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
47 18 0.17
48 19 0.18
49 67 0.64
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTATGGGACATGGCATCAACCTCGATATATGAAAGC
Found at i:92242703 original size:15 final size:13
Alignment explanation
Indices: 92242664--92242699 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
92242654 GGTAGACACA
92242664 TAGG-CGTGTGAC
1 TAGGCCGTGTGAC
92242676 TAGGCCGTGTGAC
1 TAGGCCGTGTGAC
92242689 TAGGCCGTGTG
1 TAGGCCGTGTG
92242700 TGACACACGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.14, C:0.19, G:0.42, T:0.25
Consensus pattern (13 bp):
TAGGCCGTGTGAC
Found at i:92248911 original size:28 final size:28
Alignment explanation
Indices: 92248871--92248926 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
92248861 ACACGGGCTA
*
92248871 GGACACGGGTGTGTG-ATGGCCGTGTGAG
1 GGACACAGGTGTGTGTA-GGCCGTGTGAG
92248899 GGACACAGGTGTGTGTCAGGCCGTGTGA
1 GGACACAGGTGTGTGT-AGGCCGTGTGA
92248927 AAACTCCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 14 0.56
29 10 0.40
30 1 0.04
ACGTcount: A:0.16, C:0.16, G:0.46, T:0.21
Consensus pattern (28 bp):
GGACACAGGTGTGTGTAGGCCGTGTGAG
Found at i:92249067 original size:21 final size:20
Alignment explanation
Indices: 92249043--92249082 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
92249033 ATGTTCAAGT
*
92249043 TCCACACGGGCGTGTTGCCCA
1 TCCACACGAGCGTG-TGCCCA
*
92249064 TCCACATGAGCGTGTGCCC
1 TCCACACGAGCGTGTGCCC
92249083 TGTTTCAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.15, C:0.38, G:0.28, T:0.20
Consensus pattern (20 bp):
TCCACACGAGCGTGTGCCCA
Found at i:92251123 original size:21 final size:20
Alignment explanation
Indices: 92251090--92251129 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
92251080 AAAAATTGAA
92251090 AAAGAAAAAGAGAGTGAGAG
1 AAAGAAAAAGAGAGTGAGAG
* *
92251110 AAAGCAAAACGAGATTGAGA
1 AAAG-AAAAAGAGAGTGAGA
92251130 TTGAAAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.57, C:0.05, G:0.30, T:0.07
Consensus pattern (20 bp):
AAAGAAAAAGAGAGTGAGAG
Found at i:92251180 original size:18 final size:17
Alignment explanation
Indices: 92251115--92251193 Score: 61
Period size: 18 Copynumber: 4.4 Consensus size: 17
92251105 GAGAGAAAGC
*
92251115 AAAACGAGATTGAGATTG
1 AAAA-GAGATTGAGAATG
92251133 AAAA-AGAATGTGAGAATG
1 AAAAGAG-AT-TGAGAATG
* *
92251151 AAAAGAAAATTGAAAATG
1 AAAAG-AGATTGAGAATG
*
92251169 AGAAAGAGATTGGAGAAAG
1 A-AAAGAGATT-GAGAATG
92251188 AAAAGA
1 AAAAGA
92251194 AAGAGAGCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
16 2 0.04
17 2 0.04
18 32 0.65
19 12 0.24
20 1 0.02
ACGTcount: A:0.57, C:0.01, G:0.27, T:0.15
Consensus pattern (17 bp):
AAAAGAGATTGAGAATG
Found at i:92251191 original size:37 final size:37
Alignment explanation
Indices: 92251081--92251195 Score: 101
Period size: 37 Copynumber: 3.1 Consensus size: 37
92251071 ATGAATGAAA
* *
92251081 AAAATTGAAAAAGAAAAAGAGAGTGAGAGAAAGCAAAACG
1 AAAATTGAAAATG-AAAAGAGAATGAGAGAAAG-AAAA-G
* * * * *
92251121 -AGATTGAGATTGAAAA-AGAATGTGAGAATGAAAAG
1 AAAATTGAAAATGAAAAGAGAATGAGAGAAAGAAAAG
*
92251156 AAAATTGAAAATGAGAAAGAGATTG-GAGAAAGAAAAG
1 AAAATTGAAAATGA-AAAGAGAATGAGAGAAAGAAAAG
92251193 AAA
1 AAA
92251196 GAGAGCAAGA
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
35 1 0.02
36 14 0.23
37 28 0.47
38 9 0.15
39 8 0.13
ACGTcount: A:0.59, C:0.02, G:0.26, T:0.13
Consensus pattern (37 bp):
AAAATTGAAAATGAAAAGAGAATGAGAGAAAGAAAAG
Found at i:92255794 original size:27 final size:26
Alignment explanation
Indices: 92255763--92255838 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 26
92255753 GAACTTCCAA
*
92255763 AAATTATTACGGTGTAGAAATTGGAGG
1 AAATT-TTACGGTGTAGGAATTGGAGG
*
92255790 AAATTCGTACGGTGTAGGAATTGGAGG
1 AAATT-TTACGGTGTAGGAATTGGAGG
92255817 AAATTTGTACGGTGTAGGAATT
1 AAATTT-TACGGTGTAGGAATT
92255839 TCCAGATGTG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.33, C:0.05, G:0.32, T:0.30
Consensus pattern (26 bp):
AAATTTTACGGTGTAGGAATTGGAGG
Found at i:92258789 original size:18 final size:18
Alignment explanation
Indices: 92258770--92258819 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
92258760 TTCATGATAT
92258770 TTTTATTAA-TAATAATA
1 TTTTATTAAGTAATAATA
* *
92258787 TTTTAATAAGTACTAATA
1 TTTTATTAAGTAATAATA
*
92258805 TTTTATTAATTAATA
1 TTTTATTAAGTAATA
92258820 TTATAATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 8 0.30
18 19 0.70
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (18 bp):
TTTTATTAAGTAATAATA
Found at i:92272647 original size:44 final size:44
Alignment explanation
Indices: 92272586--92272669 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
92272576 AATCGAATAC
* *
92272586 GATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTT
1 GATGCCAACGTCCCAGACATGGTCTTACACGCAAAACAGAAGTT
* *
92272630 GATGCCAACGTCTCAGACGTGGTCTTACACGCAAAACAGA
1 GATGCCAACGTCCCAGACATGGTCTTACACGCAAAACAGA
92272670 TATCGGAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.20
Consensus pattern (44 bp):
GATGCCAACGTCCCAGACATGGTCTTACACGCAAAACAGAAGTT
Found at i:92276956 original size:17 final size:17
Alignment explanation
Indices: 92276934--92276976 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
92276924 ATTTCATTTA
**
92276934 AAATGTCAATTTCCATC
1 AAATGTCAATTAACATC
*
92276951 AAATGTCCATTAACATC
1 AAATGTCAATTAACATC
92276968 AAAT-TCAAT
1 AAATGTCAAT
92276977 ACAATCATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33
Consensus pattern (17 bp):
AAATGTCAATTAACATC
Found at i:92277323 original size:39 final size:40
Alignment explanation
Indices: 92277269--92277351 Score: 159
Period size: 39 Copynumber: 2.1 Consensus size: 40
92277259 ATAAAATGAT
92277269 TTTTATTCAATTTTCCCATTCTATAAGCCTAGCCGAACCA
1 TTTTATTCAATTTTCCCATTCTATAAGCCTAGCCGAACCA
92277309 TTTT-TTCAATTTTCCCATTCTATAAGCCTAGCCGAACCA
1 TTTTATTCAATTTTCCCATTCTATAAGCCTAGCCGAACCA
92277348 TTTT
1 TTTT
92277352 CATAACTATA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 39 0.91
40 4 0.09
ACGTcount: A:0.25, C:0.27, G:0.07, T:0.41
Consensus pattern (40 bp):
TTTTATTCAATTTTCCCATTCTATAAGCCTAGCCGAACCA
Found at i:92281307 original size:29 final size:29
Alignment explanation
Indices: 92281237--92281296 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
92281227 ACCATGAGAA
*
92281237 ACATTGCCACTCAGTCTCGAATTTTGCAC
1 ACATTGCCACTCGGTCTCGAATTTTGCAC
92281266 ACATTGCCACTCGGTCTCGAATTTTGCAC
1 ACATTGCCACTCGGTCTCGAATTTTGCAC
92281295 AC
1 AC
92281297 TTTCTTGCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.23, C:0.32, G:0.15, T:0.30
Consensus pattern (29 bp):
ACATTGCCACTCGGTCTCGAATTTTGCAC
Found at i:92282001 original size:19 final size:19
Alignment explanation
Indices: 92281965--92282003 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
92281955 TTTTCATCAT
* *
92281965 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
92281984 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
92282003 A
1 A
92282004 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:92282681 original size:28 final size:28
Alignment explanation
Indices: 92282635--92282698 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
92282625 AATTAACCCG
*
92282635 AGGGGTATAAAGGTCATTTAGCATACAT
1 AGGGGTATAAAGGTAATTTAGCATACAT
* *
92282663 AGGGGTATAATGGTAATTTTGCATACAT
1 AGGGGTATAAAGGTAATTTAGCATACAT
92282691 AGGGGTAT
1 AGGGGTAT
92282699 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (28 bp):
AGGGGTATAAAGGTAATTTAGCATACAT
Found at i:92286847 original size:43 final size:42
Alignment explanation
Indices: 92286800--92286938 Score: 136
Period size: 44 Copynumber: 3.2 Consensus size: 42
92286790 CCCAAATGTA
* *
92286800 GTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGACAGG
1 GTCTTACACGTAATCAAACAT-GATGCCAATGTCCCAGACAGG
* ** * *
92286843 GTCTTACACGAAATCGGATATGATGCCAATGTCCCAGACATG
1 GTCTTACACGTAATCAAACATGATGCCAATGTCCCAGACAGG
* ** *
92286885 GTCTTACACGTAAAACAGAAGTTGATGCCAACGTCCCAGAC-GTG
1 GTCTTACACGT-AATCA-AACATGATGCCAATGTCCCAGACAG-G
92286929 GTCTTACACG
1 GTCTTACACG
92286939 CAAAACAGAT
Statistics
Matches: 78, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 29 0.37
43 19 0.24
44 30 0.38
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (42 bp):
GTCTTACACGTAATCAAACATGATGCCAATGTCCCAGACAGG
Found at i:92286924 original size:44 final size:43
Alignment explanation
Indices: 92286822--92286947 Score: 150
Period size: 44 Copynumber: 2.9 Consensus size: 43
92286812 ATCAAACATC
* * *
92286822 GATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATC-GGATAT
1 GATGCCAAC-GTCCCAGACATGGTCTTACACGAAAACAGAATAT
*
92286864 GATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGT-T
1 GATGCCAACGTCCCAGACATGGTCTTACACG-AAAACAGAA-TAT
*
92286908 GATGCCAACGTCCCAGACGTGGTCTTACACGCAAAACAGA
1 GATGCCAACGTCCCAGACATGGTCTTACACG-AAAACAGA
92286948 TATCGGAAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
42 27 0.37
43 5 0.07
44 40 0.55
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (43 bp):
GATGCCAACGTCCCAGACATGGTCTTACACGAAAACAGAATAT
Found at i:92291416 original size:138 final size:138
Alignment explanation
Indices: 92291021--92291461 Score: 423
Period size: 131 Copynumber: 3.3 Consensus size: 138
92291011 TGTTTGTTGG
* * * * * ** ** *
92291021 TTTATGATCGCAACTTGCAAAAATAGTTAGTGGACTAACACT-CCAACTGATATTCTAAAAGCTC
1 TTTATGATCGCAACCTCCAAAAATAGCTAGCGGACTTATGCTCCCAGGTGATATTCTAAGAGCTC
* * * * * * *
92291085 TAAAGGTTAAGCTCGTAGCTCCAACACAACTAGCGAACCTATG-TTCCTAGCTGATGTTATAAAA
66 AAAAGGTTAAGCTCGCAGCTCCAACACAGCTAGCGGACCTACGTTTCC-AACTGATGTTATAAAG
*
92291149 GTTTGTCAG
130 GTTTGTCAA
* *
92291158 TTTATGATCGCAACCTCCAAAAATAGCTAGCGGACTTATGCTCCCAGTTG--A---T--GAGCTT
1 TTTATGATCGCAACCTCCAAAAATAGCTAGCGGACTTATGCTCCCAGGTGATATTCTAAGAGCTC
** * * * * * * *
92291216 GCAGGGTTAAGCTCGCAACTCTAACATAGCTAGCAGACCTACGTTCCCAACTGATGTGATAAAGG
66 AAAAGGTTAAGCTCGCAGCTCCAACACAGCTAGCGGACCTACGTTTCCAACTGATGTTATAAAGG
*
92291281 TTTGTTAA
131 TTTGTCAA
* * * * * *
92291289 TTTATGATTGCAACCTTCGAAAATAGCTAGTGGACTTATGCTGCTAGGTGATATTCTAAGAGCTC
1 TTTATGATCGCAACCTCCAAAAATAGCTAGCGGACTTATGCTCCCAGGTGATATTCTAAGAGCTC
* * *
92291354 AAAAGGTTAAGCTCGCAGCTCCGACACAGCCAGCGGACCTACGTTTCCATCTGATGTTATAAAGG
66 AAAAGGTTAAGCTCGCAGCTCCAACACAGCTAGCGGACCTACGTTTCCAACTGATGTTATAAAGG
** *
92291419 TTTACCGA
131 TTTGTCAA
*
92291427 TTTATGATCGCAACATCCAAAAATAGCTAGCGGAC
1 TTTATGATCGCAACCTCCAAAAATAGCTAGCGGAC
92291462 CAACGTTCTC
Statistics
Matches: 238, Mismatches: 57, Indels: 17
0.76 0.18 0.05
Matches are distributed among these distances:
131 99 0.42
132 3 0.01
133 2 0.01
136 2 0.01
137 35 0.15
138 97 0.41
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (138 bp):
TTTATGATCGCAACCTCCAAAAATAGCTAGCGGACTTATGCTCCCAGGTGATATTCTAAGAGCTC
AAAAGGTTAAGCTCGCAGCTCCAACACAGCTAGCGGACCTACGTTTCCAACTGATGTTATAAAGG
TTTGTCAA
Found at i:92291770 original size:15 final size:16
Alignment explanation
Indices: 92291741--92291771 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92291731 CACTAATAAC
92291741 TAAACTTCAAAATTTT
1 TAAACTTCAAAATTTT
92291757 TAAACTTC-AAATTTT
1 TAAACTTCAAAATTTT
92291772 CTTATTCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (16 bp):
TAAACTTCAAAATTTT
Found at i:92293682 original size:18 final size:18
Alignment explanation
Indices: 92293659--92293694 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
92293649 AGTCAAATGA
92293659 ATTTCCTTGGTTTTTGGC
1 ATTTCCTTGGTTTTTGGC
92293677 ATTTCCTTGGTTTTTGGC
1 ATTTCCTTGGTTTTTGGC
92293695 TTTTAACAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.06, C:0.17, G:0.22, T:0.56
Consensus pattern (18 bp):
ATTTCCTTGGTTTTTGGC
Found at i:92296890 original size:20 final size:20
Alignment explanation
Indices: 92296824--92296890 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
92296814 ATTTTAGTAA
*
92296824 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
92296844 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
92296864 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
92296884 ACATGAT
1 ACATGAT
92296891 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:92297048 original size:24 final size:24
Alignment explanation
Indices: 92296939--92297095 Score: 226
Period size: 25 Copynumber: 6.4 Consensus size: 24
92296929 GGAGGAAGTG
*
92296939 TAAAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
92296963 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
* *
92296988 AATAAAGAGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
92297013 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
92297038 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
92297062 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
92297085 TAAAAGAGGCT
1 TAAAAG-GGCT
92297096 AGGCCTTCAG
Statistics
Matches: 124, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
23 18 0.15
24 38 0.31
25 68 0.55
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:92297338 original size:31 final size:31
Alignment explanation
Indices: 92297303--92297366 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
92297293 CGTTTACAGT
92297303 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
92297334 AAAGGTTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
92297365 AA
1 AA
92297367 TATGAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:92297365 original size:7 final size:7
Alignment explanation
Indices: 92297353--92297380 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
92297343 GGCCCAGTGT
92297353 TATGAAA
1 TATGAAA
92297360 TATGAAA
1 TATGAAA
92297367 TATGAAA
1 TATGAAA
92297374 TATGAAA
1 TATGAAA
92297381 AGGGCTACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:92304837 original size:20 final size:20
Alignment explanation
Indices: 92304812--92304878 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
92304802 ATTTTAGTAA
92304812 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
92304832 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
92304852 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
92304872 ACATGAT
1 ACATGAT
92304879 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:92305004 original size:50 final size:49
Alignment explanation
Indices: 92304928--92305083 Score: 244
Period size: 50 Copynumber: 3.2 Consensus size: 49
92304918 GAGGAAGTGT
92304928 AAAAGGGCTTATGCCCTAGTTATGATAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCTAGTTATGATAAAGGGCTTATGCCCCAGTTATA
* *
92304977 ATAAAGGGCTTATGCCCTAGTTATGATAAATGGCTTATGCCCCAGTTATT
1 A-AAAGGGCTTATGCCCTAGTTATGATAAAGGGCTTATGCCCCAGTTATA
* *
92305027 AAAAGGGCTTATGCCCTAGTTATTA-AAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATGATAAAGGGCTTATGCCCCAGTTATA
92305074 AAAAGAGGCT
1 AAAAG-GGCT
92305084 AGGCCTCCAG
Statistics
Matches: 101, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
47 18 0.18
48 12 0.12
49 24 0.24
50 47 0.47
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCTAGTTATGATAAAGGGCTTATGCCCCAGTTATA
Found at i:92305040 original size:24 final size:24
Alignment explanation
Indices: 92304927--92305097 Score: 211
Period size: 25 Copynumber: 7.0 Consensus size: 24
92304917 GGAGGAAGTG
*
92304927 TAAAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
92304951 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
* *
92304976 AATAAAGGGCTTATGCCCTAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
* *
92305001 GATAAATGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
92305026 TAAAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
92305050 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
92305073 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
92305098 ATGATAAAGC
Statistics
Matches: 131, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
23 18 0.14
24 38 0.29
25 75 0.57
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:92317250 original size:43 final size:43
Alignment explanation
Indices: 92317185--92317303 Score: 202
Period size: 43 Copynumber: 2.8 Consensus size: 43
92317175 TACATGAATT
* *
92317185 GCATCCATTATGAACTCGGACCTCTCAACGAGCCCTGATACTC
1 GCATCCATAATAAACTCGGACCTCTCAACGAGCCCTGATACTC
* *
92317228 GCATCCATAATAAACTCAGACCTCTCAACGAGCCTTGATACTC
1 GCATCCATAATAAACTCGGACCTCTCAACGAGCCCTGATACTC
92317271 GCATCCATAATAAACTCGGACCTCTCAACGAGC
1 GCATCCATAATAAACTCGGACCTCTCAACGAGC
92317304 TTAGATGCCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.22
Consensus pattern (43 bp):
GCATCCATAATAAACTCGGACCTCTCAACGAGCCCTGATACTC
Found at i:92322881 original size:38 final size:38
Alignment explanation
Indices: 92322830--92322903 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
92322820 TCCCTAAAGA
92322830 GAATGTAACAATATGTAATGAATTTGAAAGCTATAAGG
1 GAATGTAACAATATGTAATGAATTTGAAAGCTATAAGG
92322868 GAATGTAACAATATGTAATGAATTTGAAAGCTATAA
1 GAATGTAACAATATGTAATGAATTTGAAAGCTATAA
92322904 TCTTTAACGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.30
Consensus pattern (38 bp):
GAATGTAACAATATGTAATGAATTTGAAAGCTATAAGG
Found at i:92322890 original size:19 final size:19
Alignment explanation
Indices: 92322830--92322890 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
92322820 TCCCTAAAGA
92322830 GAATGTAACAATATGTAAT
1 GAATGTAACAATATGTAAT
* * ** * *
92322849 GAATTTGA-AAGCTATAAGG
1 GAATGTAACAATATGTAA-T
92322868 GAATGTAACAATATGTAAT
1 GAATGTAACAATATGTAAT
92322887 GAAT
1 GAAT
92322891 TTGAAAGCTA
Statistics
Matches: 28, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
18 6 0.21
19 16 0.57
20 6 0.21
ACGTcount: A:0.46, C:0.05, G:0.20, T:0.30
Consensus pattern (19 bp):
GAATGTAACAATATGTAAT
Found at i:92326841 original size:10 final size:10
Alignment explanation
Indices: 92326814--92326851 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
92326804 TTAAATTCTC
*
92326814 AAAGATAAAT
1 AAAGATAATT
92326824 ATAA-ATAATT
1 A-AAGATAATT
92326834 AAAGATAATT
1 AAAGATAATT
92326844 AAAGATAA
1 AAAGATAA
92326852 ATAAGGACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (10 bp):
AAAGATAATT
Found at i:92333476 original size:20 final size:20
Alignment explanation
Indices: 92333450--92333504 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
92333440 GATCCATAAT
*
92333450 AGGGGCACCAAAGTGCAGAC
1 AGGGGCACCAAAGTGCAAAC
* *
92333470 TGGGGCA-CATATGTGCAAAC
1 AGGGGCACCA-AAGTGCAAAC
*
92333490 AGGGGCACCATAGTG
1 AGGGGCACCAAAGTG
92333505 TGAATAGGGA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
19 2 0.07
20 23 0.85
21 2 0.07
ACGTcount: A:0.31, C:0.22, G:0.35, T:0.13
Consensus pattern (20 bp):
AGGGGCACCAAAGTGCAAAC
Found at i:92333513 original size:20 final size:20
Alignment explanation
Indices: 92333447--92333518 Score: 51
Period size: 20 Copynumber: 3.6 Consensus size: 20
92333437 ATAGATCCAT
* *
92333447 AATAGGGGCACCAAAGTGCAG
1 AATAGGGGCACCATAGTG-TG
*
92333468 ACT-GGGGCA-CATA-TGTG
1 AATAGGGGCACCATAGTGTG
*
92333485 CAAACAGGGGCACCATAGTGTG
1 --AATAGGGGCACCATAGTGTG
*
92333507 AATAGGGACACC
1 AATAGGGGCACC
92333519 GAAGAGTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 11
0.68 0.12 0.19
Matches are distributed among these distances:
17 1 0.03
18 2 0.05
19 4 0.10
20 22 0.56
21 6 0.15
22 4 0.10
ACGTcount: A:0.33, C:0.21, G:0.32, T:0.14
Consensus pattern (20 bp):
AATAGGGGCACCATAGTGTG
Found at i:92334663 original size:22 final size:22
Alignment explanation
Indices: 92334624--92334689 Score: 96
Period size: 22 Copynumber: 2.9 Consensus size: 22
92334614 AGAAGAAAAC
*
92334624 CTTTTGTTTTCTTATTTTATTAA
1 CTTTTATTTT-TTATTTTATTAA
92334647 CTTTTATTTTTTATTTTATTAA
1 CTTTTATTTTTTATTTTATTAA
92334669 CTTTTATTTTTTTTATTTTAT
1 CTTTTA--TTTTTTATTTTAT
92334690 CTTTTAATAA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
22 18 0.45
23 9 0.22
24 13 0.32
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.74
Consensus pattern (22 bp):
CTTTTATTTTTTATTTTATTAA
Found at i:92339914 original size:32 final size:32
Alignment explanation
Indices: 92339873--92339940 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
92339863 GATTTGTCTT
92339873 AAATTAGTTATTTATCCAAACAAAGCAATTAC
1 AAATTAGTTATTTATCCAAACAAAGCAATTAC
* *
92339905 AAATTAGTTATTTATCCCAATAAAGCAATTAC
1 AAATTAGTTATTTATCCAAACAAAGCAATTAC
92339937 AAAT
1 AAAT
92339941 GTTAGCATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (32 bp):
AAATTAGTTATTTATCCAAACAAAGCAATTAC
Found at i:92343891 original size:25 final size:25
Alignment explanation
Indices: 92343824--92343892 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
92343814 GAGCATAAAT
* *
92343824 GTGCTAATAATCGGAGAACAATAAC
1 GTGCTTATAATCGGAGAGCAATAAC
** *
92343849 GTGCTTATAATCAAAGAGCACTAAC
1 GTGCTTATAATCGGAGAGCAATAAC
92343874 GTGCTTATAATCGGAGAGC
1 GTGCTTATAATCGGAGAGC
92343893 GCACTAAGAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (25 bp):
GTGCTTATAATCGGAGAGCAATAAC
Found at i:92359746 original size:5 final size:5
Alignment explanation
Indices: 92359714--92359803 Score: 53
Period size: 5 Copynumber: 17.2 Consensus size: 5
92359704 TGAATCCTCC
*
92359714 TATTT T-TTT TA-TT TAGTCT TATTTT TATTT TATTT TATATT TATTTT
1 TATTT TATTT TATTT TA-TTT TA-TTT TATTT TATTT TAT-TT TA-TTT
* *
92359761 TCTTT TGATTTT TATTT TCATTT CAATTT TA--T TATTT TATTT T
1 TATTT T-A-TTT TATTT T-ATTT -TATTT TATTT TATTT TATTT T
92359804 CCAAGACAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 22
0.70 0.07 0.23
Matches are distributed among these distances:
3 3 0.04
4 8 0.12
5 28 0.42
6 23 0.34
7 5 0.07
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.74
Consensus pattern (5 bp):
TATTT
Found at i:92359750 original size:22 final size:21
Alignment explanation
Indices: 92359716--92359772 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 21
92359706 AATCCTCCTA
92359716 TTTTTTTTA-TTTAGT-CTTAT
1 TTTTTTTTATTTTA-TACTTAT
*
92359736 TTTTATTTTATTTTATATTTAT
1 TTTT-TTTTATTTTATACTTAT
92359758 TTTTCTTTTGATTTT
1 TTTT-TTTT-ATTTT
92359773 TATTTTCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 4 0.13
21 6 0.19
22 16 0.52
23 5 0.16
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.77
Consensus pattern (21 bp):
TTTTTTTTATTTTATACTTAT
Found at i:92359751 original size:16 final size:16
Alignment explanation
Indices: 92359719--92359803 Score: 68
Period size: 17 Copynumber: 5.2 Consensus size: 16
92359709 CCTCCTATTT
*
92359719 TTTTTA-TTTAGTCTTA
1 TTTTTATTTTA-TTTTA
92359735 TTTTTATTTTATTTTA
1 TTTTTATTTTATTTTA
* *
92359751 TATTTATTTTTCTTTTGA
1 TTTTTA-TTTTATTTT-A
*
92359769 TTTTTATTTTCATTTCA
1 TTTTTATTTT-ATTTTA
*
92359786 ATTTTA--TTATTTTA
1 TTTTTATTTTATTTTA
92359800 TTTT
1 TTTT
92359804 CCAAGACAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
14 8 0.14
15 2 0.04
16 15 0.27
17 22 0.39
18 9 0.16
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTTTATTTTATTTTA
Found at i:92359754 original size:12 final size:11
Alignment explanation
Indices: 92359732--92359803 Score: 65
Period size: 12 Copynumber: 6.2 Consensus size: 11
92359722 TTATTTAGTC
92359732 TTATTTTTATT
1 TTATTTTTATT
92359743 TTA-TTTTATAT
1 TTATTTTTAT-T
*
92359754 TTATTTTTCTT
1 TTATTTTTATT
92359765 TTGATTTTTATT
1 TT-ATTTTTATT
**
92359777 TTCATTTCAATT
1 TT-ATTTTTATT
92359789 TTATTATTTTATT
1 TTA-T-TTTTATT
92359802 TT
1 TT
92359804 CCAAGACAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
10 6 0.12
11 11 0.22
12 25 0.51
13 7 0.14
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.75
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:92359773 original size:7 final size:6
Alignment explanation
Indices: 92359732--92359783 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
92359722 TTATTTAGTC
* * *
92359732 TTATTT TTA-TT TTA-TT TTATAT TTATTT TTCTTT TGATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
*
92359778 TCATTT
1 TTATTT
92359784 CAATTTTATT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
5 10 0.26
6 28 0.74
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:92359776 original size:22 final size:22
Alignment explanation
Indices: 92359732--92359777 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
92359722 TTATTTAGTC
92359732 TTATTTTTATTTTATTTTATAT
1 TTATTTTTATTTTATTTTATAT
*
92359754 TTATTTTTCTTTTGATTTT-TAT
1 TTATTTTTATTTT-ATTTTATAT
92359776 TT
1 TT
92359778 TCATTTCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.78
Consensus pattern (22 bp):
TTATTTTTATTTTATTTTATAT
Found at i:92366511 original size:13 final size:14
Alignment explanation
Indices: 92366488--92366520 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
92366478 TACAAATAAC
*
92366488 AGAATCAGATATGT
1 AGAATCAGATATAT
92366502 AGAA-CAGATATAT
1 AGAATCAGATATAT
92366515 AGAATC
1 AGAATC
92366521 CTACCCCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.48, C:0.09, G:0.18, T:0.24
Consensus pattern (14 bp):
AGAATCAGATATAT
Found at i:92369274 original size:39 final size:40
Alignment explanation
Indices: 92369176--92369357 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
92369166 AATGATGTCT
* * *
92369176 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCC
* *
92369216 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
92369256 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
92369295 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
92369335 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
92369358 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 17, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
39 34 0.29
40 75 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:92369379 original size:79 final size:79
Alignment explanation
Indices: 92369226--92369390 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
92369216 GGACTAAGAT
* **
92369226 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* *
92369291 ATCAGGGTTAAGTC
66 ATCACGGTTAAATC
* * *
92369305 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
92369368 TATATC-CGGTTAAATT
63 TAAATCACGGTTAAATC
92369384 CCGAAGG
1 CCGAAGG
92369391 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCACGGTTAAATC
Found at i:92371307 original size:22 final size:21
Alignment explanation
Indices: 92371281--92371325 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
92371271 TTTACACCAA
*
92371281 GTTGTGGGTAAAACCACTCATT
1 GTTGTGGAT-AAACCACTCATT
*
92371303 GTTGTGGATGAACCACTCATT
1 GTTGTGGATAAACCACTCATT
92371324 GT
1 GT
92371326 AGATAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (21 bp):
GTTGTGGATAAACCACTCATT
Found at i:92371710 original size:34 final size:34
Alignment explanation
Indices: 92371615--92371695 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 34
92371605 AGAATTTAAT
* ** * *
92371615 TATGCTTTTAACAGAACAATACGGTAGCAATCAA
1 TATGCTTATAACAGTTCAATTCAGTAGCAATCAA
*
92371649 TATGCTTATAACAGTTTAATTCAGTAGCAAAT-AA
1 TATGCTTATAACAGTTCAATTCAGTAGC-AATCAA
92371683 TATGCTTATAACA
1 TATGCTTATAACA
92371696 TATCAGCTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
34 37 0.93
35 3 0.08
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (34 bp):
TATGCTTATAACAGTTCAATTCAGTAGCAATCAA
Found at i:92371989 original size:29 final size:29
Alignment explanation
Indices: 92371959--92372065 Score: 121
Period size: 28 Copynumber: 3.8 Consensus size: 29
92371949 AATTCTAGGT
* *
92371959 AAAATTGTAAAATATGAAAAACATGAGGT
1 AAAATTGTAAAATCTGAAAAACATGAGGG
*
92371988 AAAATTGTAAAATCT-AAAAA-ATAAGGG
1 AAAATTGTAAAATCTGAAAAACATGAGGG
* * *
92372015 GAAATTGTAAAATTTGAAAAATA-GAGGG
1 AAAATTGTAAAATCTGAAAAACATGAGGG
* *
92372043 ACAATTGTAAAATCTAAAAAACA
1 AAAATTGTAAAATCTGAAAAACA
92372066 GGGGTCACAT
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
27 18 0.28
28 32 0.49
29 15 0.23
ACGTcount: A:0.56, C:0.05, G:0.16, T:0.23
Consensus pattern (29 bp):
AAAATTGTAAAATCTGAAAAACATGAGGG
Found at i:92372006 original size:56 final size:54
Alignment explanation
Indices: 92371959--92372062 Score: 145
Period size: 56 Copynumber: 1.9 Consensus size: 54
92371949 AATTCTAGGT
*
92371959 AAAATTGTAAAATATGAAAAACATGAGGTAAAATTGTAAAATCTAAAAAATAAGGG
1 AAAATTGTAAAATATGAAAAACA-GAGGGAAAATTGTAAAATCT-AAAAATAAGGG
* * * *
92372015 GAAATTGTAAAATTTGAAAAATAGAGGGACAATTGTAAAATCTAAAAA
1 AAAATTGTAAAATATGAAAAACAGAGGGAAAATTGTAAAATCTAAAAA
92372063 ACAGGGGTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 5 0.12
55 18 0.42
56 20 0.47
ACGTcount: A:0.56, C:0.04, G:0.16, T:0.24
Consensus pattern (54 bp):
AAAATTGTAAAATATGAAAAACAGAGGGAAAATTGTAAAATCTAAAAATAAGGG
Found at i:92372034 original size:28 final size:26
Alignment explanation
Indices: 92371960--92372069 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 26
92371950 ATTCTAGGTA
* **
92371960 AAATTGTAAAATATGAAAAACATGAGGTA
1 AAATTGTAAAATCT-AAAAA-AT-AGGGG
92371989 AAATTGTAAAATCTAAAAAATAAGGGG
1 AAATTGTAAAATCTAAAAAAT-AGGGG
* *
92372016 AAATTGTAAAATTTGAAAAATAGAGGG
1 AAATTGTAAAATCTAAAAAATAG-GGG
*
92372043 ACAATTGTAAAATCTAAAAAACAGGGG
1 A-AATTGTAAAATCTAAAAAATAGGGG
92372070 TCACATGCTC
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.03
27 31 0.44
28 24 0.34
29 13 0.19
ACGTcount: A:0.54, C:0.05, G:0.19, T:0.23
Consensus pattern (26 bp):
AAATTGTAAAATCTAAAAAATAGGGG
Found at i:92378894 original size:39 final size:40
Alignment explanation
Indices: 92378786--92378970 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
92378776 TCGAATGATG
* * *
92378786 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
92378825 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
92378866 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
92378905 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
92378944 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
92378971 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:92378992 original size:79 final size:79
Alignment explanation
Indices: 92378841--92379003 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
92378831 ACTAAGATCT
* **
92378841 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
*
92378906 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* * *
92378920 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
* *
92378983 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
92378999 GAAGG
1 GAAGG
92379004 TACGTGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:92381323 original size:34 final size:34
Alignment explanation
Indices: 92381228--92381308 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 34
92381218 AGAATTTAAT
* ** * *
92381228 TATGCTTTTAACAGAACAATACGGTAGCAATCAA
1 TATGCTTATAACAGTTCAATTCAGTAGCAATCAA
*
92381262 TATGCTTATAACAGTTTAATTCAGTAGCAAAT-AA
1 TATGCTTATAACAGTTCAATTCAGTAGC-AATCAA
92381296 TATGCTTATAACA
1 TATGCTTATAACA
92381309 TATCAGCTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
34 37 0.93
35 3 0.08
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (34 bp):
TATGCTTATAACAGTTCAATTCAGTAGCAATCAA
Found at i:92381602 original size:29 final size:29
Alignment explanation
Indices: 92381572--92381678 Score: 121
Period size: 28 Copynumber: 3.8 Consensus size: 29
92381562 AATTCTAGGT
* *
92381572 AAAATTGTAAAATATGAAAAACATGAGGT
1 AAAATTGTAAAATCTGAAAAACATGAGGG
*
92381601 AAAATTGTAAAATCT-AAAAA-ATAAGGG
1 AAAATTGTAAAATCTGAAAAACATGAGGG
* * *
92381628 GAAATTGTAAAATTTGAAAAATA-GAGGG
1 AAAATTGTAAAATCTGAAAAACATGAGGG
* *
92381656 ACAATTGTAAAATCTAAAAAACA
1 AAAATTGTAAAATCTGAAAAACA
92381679 GGGGTCACAT
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
27 18 0.28
28 32 0.49
29 15 0.23
ACGTcount: A:0.56, C:0.05, G:0.16, T:0.23
Consensus pattern (29 bp):
AAAATTGTAAAATCTGAAAAACATGAGGG
Found at i:92381619 original size:56 final size:54
Alignment explanation
Indices: 92381572--92381675 Score: 145
Period size: 56 Copynumber: 1.9 Consensus size: 54
92381562 AATTCTAGGT
*
92381572 AAAATTGTAAAATATGAAAAACATGAGGTAAAATTGTAAAATCTAAAAAATAAGGG
1 AAAATTGTAAAATATGAAAAACA-GAGGGAAAATTGTAAAATCT-AAAAATAAGGG
* * * *
92381628 GAAATTGTAAAATTTGAAAAATAGAGGGACAATTGTAAAATCTAAAAA
1 AAAATTGTAAAATATGAAAAACAGAGGGAAAATTGTAAAATCTAAAAA
92381676 ACAGGGGTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 5 0.12
55 18 0.42
56 20 0.47
ACGTcount: A:0.56, C:0.04, G:0.16, T:0.24
Consensus pattern (54 bp):
AAAATTGTAAAATATGAAAAACAGAGGGAAAATTGTAAAATCTAAAAATAAGGG
Found at i:92381647 original size:28 final size:26
Alignment explanation
Indices: 92381573--92381682 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 26
92381563 ATTCTAGGTA
* **
92381573 AAATTGTAAAATATGAAAAACATGAGGTA
1 AAATTGTAAAATCT-AAAAA-AT-AGGGG
92381602 AAATTGTAAAATCTAAAAAATAAGGGG
1 AAATTGTAAAATCTAAAAAAT-AGGGG
* *
92381629 AAATTGTAAAATTTGAAAAATAGAGGG
1 AAATTGTAAAATCTAAAAAATAG-GGG
*
92381656 ACAATTGTAAAATCTAAAAAACAGGGG
1 A-AATTGTAAAATCTAAAAAATAGGGG
92381683 TCACATGCTC
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.03
27 31 0.44
28 24 0.34
29 13 0.19
ACGTcount: A:0.54, C:0.05, G:0.19, T:0.23
Consensus pattern (26 bp):
AAATTGTAAAATCTAAAAAATAGGGG
Found at i:92383717 original size:27 final size:27
Alignment explanation
Indices: 92383693--92383757 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
92383683 GAGTTTTTGG
*
92383693 TAAT-TTTTACTATTTTTTCAATTTTA
1 TAATATTTTAATATTTTTTCAATTTTA
* *
92383719 TACTATTTTAATATTTTTTCCATTTTTTA
1 TAATATTTTAATATTTTTT-CA-ATTTTA
92383748 TAAT-TTTTAA
1 TAATATTTTAA
92383758 AAATTCTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 3 0.09
27 13 0.41
28 8 0.25
29 8 0.25
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.65
Consensus pattern (27 bp):
TAATATTTTAATATTTTTTCAATTTTA
Found at i:92383771 original size:24 final size:25
Alignment explanation
Indices: 92383742--92383806 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 25
92383732 TTTTTTCCAT
92383742 TTTTTATAATTTTTAAAAAT-TCTA
1 TTTTTATAATTTTTAAAAATATCTA
* ** * * *
92383766 TTTTTAAAAAATTAAAAAATATTTT
1 TTTTTATAATTTTTAAAAATATCTA
92383791 TTTTTAT-ATTTTTAAA
1 TTTTTATAATTTTTAAA
92383807 TTTTTTATGA
Statistics
Matches: 30, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
24 22 0.73
25 8 0.27
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (25 bp):
TTTTTATAATTTTTAAAAATATCTA
Found at i:92383812 original size:19 final size:19
Alignment explanation
Indices: 92383790--92383826 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
92383780 AAAAATATTT
92383790 TTTTTTAT-A-TTTTTAAA
1 TTTTTTATGATTTTTTAAA
92383807 TTTTTTATGATTTTTTAAA
1 TTTTTTATGATTTTTTAAA
92383826 T
1 T
92383827 AAATATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 1 0.06
19 9 0.50
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (19 bp):
TTTTTTATGATTTTTTAAA
Found at i:92384312 original size:30 final size:30
Alignment explanation
Indices: 92384276--92384335 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
92384266 AATATTTCGT
92384276 TTTTTTGGCTTAGCTTAAAATTTC-ATATTA
1 TTTTTTGGCTTAGCTTAAAA-TTCAATATTA
92384306 TTTTTTGGCTTAGCTTAAAATTCAATATTA
1 TTTTTTGGCTTAGCTTAAAATTCAATATTA
92384336 AAATCAAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 3 0.10
30 26 0.90
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.52
Consensus pattern (30 bp):
TTTTTTGGCTTAGCTTAAAATTCAATATTA
Found at i:92384775 original size:6 final size:6
Alignment explanation
Indices: 92384764--92384788 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
92384754 TCATTTTCCT
92384764 TTAAAA TTAAAA TTAAAA TTAAAA T
1 TTAAAA TTAAAA TTAAAA TTAAAA T
92384789 AGTGTTCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TTAAAA
Found at i:92393053 original size:15 final size:16
Alignment explanation
Indices: 92393027--92393062 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
92393017 AATTACTTAA
*
92393027 TTAATGTAATTAAATC
1 TTAATGTAATTAAACC
92393043 TTAAT-TAATTAAACC
1 TTAATGTAATTAAACC
92393058 TTAAT
1 TTAAT
92393063 CACAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.44
Consensus pattern (16 bp):
TTAATGTAATTAAACC
Found at i:92400375 original size:106 final size:106
Alignment explanation
Indices: 92400254--92400452 Score: 299
Period size: 106 Copynumber: 1.9 Consensus size: 106
92400244 CACCCCACAC
* *
92400254 AGTCGTGTGTCATTATTATTTTTGGTGTAGGTTTCACATGGTTTGCAACATGGCTGTGTGACTCA
1 AGTCGTGTGTCATTATTATTTTTGGTGTAGGTTTCACATGGTCTGCAACATGGCCGTGTGACTCA
** * *
92400319 ACATTGAGTGCACACACTATTTGGCACATGTTCTGCATCAT
66 ACATCAAATGCACACACGATTTGGCACATGTTCTGCATCAT
* ** *
92400360 AGTCGTGTGTCATTATTGTTTTTGGTGTAGGTTTCACATGGTCTGTGACATGGCCGTGTGACTTA
1 AGTCGTGTGTCATTATTATTTTTGGTGTAGGTTTCACATGGTCTGCAACATGGCCGTGTGACTCA
*
92400425 ACATCAAATGCACACACGGTTTGGCACA
66 ACATCAAATGCACACACGATTTGGCACA
92400453 GGTGTAACAC
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
106 82 1.00
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (106 bp):
AGTCGTGTGTCATTATTATTTTTGGTGTAGGTTTCACATGGTCTGCAACATGGCCGTGTGACTCA
ACATCAAATGCACACACGATTTGGCACATGTTCTGCATCAT
Found at i:92402493 original size:48 final size:48
Alignment explanation
Indices: 92402423--92402744 Score: 219
Period size: 48 Copynumber: 6.8 Consensus size: 48
92402413 GTGAATTGCT
* * * **
92402423 GATGCCATATCCCACACATGGTCTTACACTGGCTCACATGTCGAGGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCC
* * * * * * *
92402471 GATGCCATGTCCTAGATATGGTCTTACACTAGCTCTCATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCC
* * * * *
92402519 GAGGCTATGT-CCA-ACATGGTCTTACACTGGCTCTCATATGGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCC
* * * **
92402565 GACGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-GTCAACACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCC
* ** * * * *
92402612 GATGCTATGT-CCA-ACATGGTCTTACACCAGCTCTCATAAC-ATAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGA-GGCC
* * * * * *
92402658 GATGCCATGTTCCAAACATGGTTTTACACTGGCATGCA-AAAT-GTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CACATATCGAGGCC
* * *
92402706 GATGCCATATCCCAAACATGGTCTTACACTAGCTCACAT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
92402745 GTCACCCCAA
Statistics
Matches: 208, Mismatches: 56, Indels: 21
0.73 0.20 0.07
Matches are distributed among these distances:
45 21 0.10
46 50 0.24
47 21 0.10
48 112 0.54
49 3 0.01
50 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCC
Found at i:92402645 original size:93 final size:94
Alignment explanation
Indices: 92402474--92402690 Score: 256
Period size: 93 Copynumber: 2.3 Consensus size: 94
92402464 CGAGGTTGAT
* * * * **
92402474 GCCATGTCCTAGATATGGTCTTACACTAGCTCTCATCTCAATGCCGAGGCTATGTCCAACATGGT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAACACCGAGGCTATGTCCAACATGGT
** *** *
92402539 CTTACACTGGCTCTCATATGGTGGCCGAC
66 CTTACACCAGCTCTCATAACATAGCCGAC
* *
92402568 GCCATGTCCCAGACATGGTCTTACACTGGCTCACA-GTCAACACCGATGCTATGTCCAACATGGT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAACACCGAGGCTATGTCCAACATGGT
* *
92402632 CTTACACCAGCTCTCATAACATAGTCGAT
66 CTTACACCAGCTCTCATAACATAGCCGAC
* * *
92402661 GCCATGTTCCAAACATGGTTTTACACTGGC
1 GCCATGTCCCAGACATGGTCTTACACTGGC
92402691 ATGCAAAATG
Statistics
Matches: 104, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
93 73 0.70
94 31 0.30
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (94 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAACACCGAGGCTATGTCCAACATGGT
CTTACACCAGCTCTCATAACATAGCCGAC
Found at i:92402704 original size:141 final size:142
Alignment explanation
Indices: 92402426--92402748 Score: 361
Period size: 141 Copynumber: 2.3 Consensus size: 142
92402416 AATTGCTGAT
* * **** *
92402426 GCCATATCCCACACATGGTCTTACACTGGCTCACATGTCGAGGTTGATGCCATGTCCTAGATATG
1 GCCATATCCCAAACATGGTCTTACACTGGCTCACATGTCAACACCGATGCCATGTCCTAGACATG
* ** * * *
92402491 GTCTTACACTAGCTCTCATCTCAATGCCGAGGCTATGTCCAACATGGTCTTACACTGGCTCTCAT
66 GTCTTACACCAGCTCTCATAACAATGCCGAGGCCATGTCCAACATGGTCTTACACTGGCTCTAAA
92402556 ATGGTGGCCGAC
131 ATGGTGGCCGAC
* * *
92402568 GCCATGTCCCAGACATGGTCTTACACTGGCTCACA-GTCAACACCGATGCTATGTCC-A-ACATG
1 GCCATATCCCAAACATGGTCTTACACTGGCTCACATGTCAACACCGATGCCATGTCCTAGACATG
* * *
92402630 GTCTTACACCAGCTCTCATAAC-ATAGTCGATGCCATGTTCCAAACATGGTTTTACACTGGCATG
66 GTCTTACACCAGCTCTCATAACAAT-GCCGAGGCCATG-TCC-AACATGGTCTTACACTGGC-T-
* *
92402694 C-AAAAT-GTGGCTGAT
126 CTAAAATGGTGGCCGAC
*
92402709 GCCATATCCCAAACATGGTCTTACACTAGCTCACATGTCA
1 GCCATATCCCAAACATGGTCTTACACTGGCTCACATGTCA
92402749 CCCCAAATGT
Statistics
Matches: 152, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
138 2 0.01
139 32 0.21
140 4 0.03
141 72 0.47
142 41 0.27
143 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (142 bp):
GCCATATCCCAAACATGGTCTTACACTGGCTCACATGTCAACACCGATGCCATGTCCTAGACATG
GTCTTACACCAGCTCTCATAACAATGCCGAGGCCATGTCCAACATGGTCTTACACTGGCTCTAAA
ATGGTGGCCGAC
Found at i:92404985 original size:31 final size:30
Alignment explanation
Indices: 92404959--92405017 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
92404949 AATTTACATT
*
92404959 TTATATACCATTATATTAAATTATTTAAACA
1 TTATATAACATTA-ATTAAATTATTTAAACA
*
92404990 TTATGTAACATTAATTAAATTATTTAAA
1 TTATATAACATTAATTAAATTATTTAAA
92405018 TATCAGTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.46
Consensus pattern (30 bp):
TTATATAACATTAATTAAATTATTTAAACA
Found at i:92405646 original size:5 final size:6
Alignment explanation
Indices: 92405619--92405644 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
92405609 ATGTTCTTAG
92405619 TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
92405645 ATGAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:92410881 original size:25 final size:27
Alignment explanation
Indices: 92410844--92410896 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
92410834 TCAAACATGC
92410844 ATTTAGGTCAATTTAACT-CTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
92410870 ATTTTGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
92410896 A
1 A
92410897 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.11, G:0.23, T:0.42
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:92412376 original size:26 final size:26
Alignment explanation
Indices: 92412340--92412395 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
92412330 TGAAATTCCA
92412340 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92412366 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92412392 ATCA
1 ATCA
92412396 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:92417773 original size:24 final size:26
Alignment explanation
Indices: 92417737--92417787 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
92417727 TCAAACATGC
92417737 ATTTAGGTCAATTTAAC-CCTAGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGT
* *
92417762 ATTTCGGT-AATTTATCTCCTAGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGT
92417787 A
1 A
92417788 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACTCCTAGGGT
Found at i:92419298 original size:26 final size:26
Alignment explanation
Indices: 92419259--92419340 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
92419249 TGAAATTCCA
92419259 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
92419285 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92419311 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92419337 ATCA
1 ATCA
92419341 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:92424870 original size:93 final size:92
Alignment explanation
Indices: 92424769--92424948 Score: 238
Period size: 93 Copynumber: 1.9 Consensus size: 92
92424759 CACTCGTCGG
92424769 TTTTTTTTTTCAATTTCAAATATAACGGTAAAA-TTTATGTTTTG-GCCTCACTATTAAACTCGA
1 TTTTTTTTTTC-ATTTCAAATATAACGGTAAAATTTTA-GTTTTGAGCC-CACTATTAAACTCGA
* *
92424832 ATTTAAGATTTAATTTTTATATTTTATATT
63 ATTTAAAATTTAATCTTTATATTTTATATT
* * * * *
92424862 TTTATTTTTTTCATTTCAATTATAATGGTAAAATTTTAGTTTTGATCCCTCTTTTAAACTCGAAT
1 TTT-TTTTTTTCATTTCAAATATAACGGTAAAATTTTAGTTTTGAGCCCACTATTAAACTCGAAT
*
92424927 TTAAAATTTACTCTTTATATTT
65 TTAAAATTTAATCTTTATATTT
92424949 CTATGTCCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
93 62 0.82
94 14 0.18
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.53
Consensus pattern (92 bp):
TTTTTTTTTTCATTTCAAATATAACGGTAAAATTTTAGTTTTGAGCCCACTATTAAACTCGAATT
TAAAATTTAATCTTTATATTTTATATT
Found at i:92441049 original size:50 final size:49
Alignment explanation
Indices: 92440877--92441146 Score: 170
Period size: 49 Copynumber: 5.6 Consensus size: 49
92440867 GGGTAGGATA
* * **
92440877 CCGATGCCATG-CCCTAGAAATGGTCTTACACTGGCTCAT-AC-ATC-AAT
1 CCGATGCCATGTCCC-AGACATGGTCTTACACTGACT-ATCACAATCGAGG
* *
92440924 TCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGCAATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACAATCGAGG
* ** * *
92440973 CTGACACCATGTCCCATG-CATGGTCTTACACT-AGCTCTCACATATCTG-TG
1 CCGATGCCATGTCCCA-GACATGGTCTTACACTGA-CTATCACA-ATC-GAGG
* * * *
92441023 CCGATGCCATATCCCAGACATGGTCTTACATTGACACATCTC-AT--A-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCACAATCGAGG
* * * *
92441069 CCGATGCCATGTCCCAAACATGGTCTTACAATGGC--TCACATCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACA-ATCGAGG
* * **
92441117 CCAATGCCATGTCCTAGACACAGTCTTACA
1 CCGATGCCATGTCCCAGACATGGTCTTACA
92441147 TTAGCTCTCG
Statistics
Matches: 174, Mismatches: 32, Indels: 33
0.73 0.13 0.14
Matches are distributed among these distances:
43 3 0.02
45 1 0.01
46 34 0.20
47 31 0.18
48 33 0.19
49 36 0.21
50 31 0.18
51 5 0.03
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACAATCGAGG
Found at i:92441128 original size:48 final size:46
Alignment explanation
Indices: 92441026--92441130 Score: 122
Period size: 46 Copynumber: 2.2 Consensus size: 46
92441016 ATCTGTGCCG
* * * *
92441026 ATGCCATATCCCAGACATGGTCTTACATTGACACATCTCATAGCCG
1 ATGCCATGTCCCAAACATGGTCTTACATGGACACATCTCATAGCCA
* *
92441072 ATGCCATGTCCCAAACATGGTCTTACAATGGCTCACATCTCGA-GGCCA
1 ATGCCATGTCCCAAACATGGTCTTAC-ATGG-ACACATCTC-ATAGCCA
92441120 ATGCCATGTCC
1 ATGCCATGTCC
92441131 TAGACACAGT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
46 24 0.48
47 3 0.06
48 22 0.44
49 1 0.02
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (46 bp):
ATGCCATGTCCCAAACATGGTCTTACATGGACACATCTCATAGCCA
Found at i:92441202 original size:48 final size:48
Alignment explanation
Indices: 92440877--92441205 Score: 172
Period size: 48 Copynumber: 6.9 Consensus size: 48
92440867 GGGTAGGATA
* * * *
92440877 CCGATGCCATGCCCTAGAAATGGTCTTACACTGG--CTCATACATCAA-T
1 CCGATGCCATGTCCTAGACATGGTCTTACAATGGCTCTCAT-C-TCAAGG
* * * * * * *
92440924 TCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGCA-ATCGAGG
1 CCGATGCCATGTCCTAGACATGGTCTTACAATGGC--TCTCATCTCAAGG
* ** * * * * *
92440973 CTGACACCATGTCCCATG-CATGGTCTTACACTAGCTCTCACATATC-TGTG
1 CCGATGCCATGTCCTA-GACATGGTCTTACAATGGCTCT--CATCTCAAG-G
* * * * *
92441023 CCGATGCCATATCCCAGACATGGTCTTAC-ATTG-ACACATCTCATA-G
1 CCGATGCCATGTCCTAGACATGGTCTTACAATGGCTCTCATCTCA-AGG
* * * *
92441069 CCGATGCCATGTCCCAAACATGGTCTTACAATGGCTCACATCTCGAGG
1 CCGATGCCATGTCCTAGACATGGTCTTACAATGGCTCTCATCTCAAGG
* ** * * * *
92441117 CCAATGCCATGTCCTAGACACAGTCTTACATTAGCTCTCGTCTCAATG
1 CCGATGCCATGTCCTAGACATGGTCTTACAATGGCTCTCATCTCAAGG
* * *
92441165 CCGATGACATGTCTTAGACATGGTCTTACACTGGCTCTCAT
1 CCGATGCCATGTCCTAGACATGGTCTTACAATGGCTCTCAT
92441206 AATGTGACCG
Statistics
Matches: 215, Mismatches: 51, Indels: 31
0.72 0.17 0.10
Matches are distributed among these distances:
46 33 0.15
47 35 0.16
48 83 0.39
49 33 0.15
50 28 0.13
51 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCTAGACATGGTCTTACAATGGCTCTCATCTCAAGG
Found at i:92444933 original size:21 final size:21
Alignment explanation
Indices: 92444899--92444939 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
92444889 GTCAGTAACC
*
92444899 AAATGTTCACACAAATAGACA
1 AAATGTTCACACAAACAGACA
**
92444920 AAATGTTCTGACAAACAGAC
1 AAATGTTCACACAAACAGAC
92444940 GTCTATTTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.49, C:0.20, G:0.12, T:0.20
Consensus pattern (21 bp):
AAATGTTCACACAAACAGACA
Found at i:92447695 original size:23 final size:23
Alignment explanation
Indices: 92447669--92447712 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
92447659 TCGAATCCAA
92447669 GTCT-GAAAACAAGAATAAAACTT
1 GTCTAGAAAACAA-AATAAAACTT
*
92447692 GTCTAGAAAATAAAATAAAAC
1 GTCTAGAAAACAAAATAAAAC
92447713 CTTATTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.20
Consensus pattern (23 bp):
GTCTAGAAAACAAAATAAAACTT
Found at i:92454964 original size:25 final size:25
Alignment explanation
Indices: 92454935--92454986 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
92454925 GGGTAAAATG
*
92454935 AACTAGAAGACAAATTTAAAAGCCA
1 AACTAGAAGACAAAATTAAAAGCCA
92454960 AACTAGAAGACAAAATTAAAAGCCA
1 AACTAGAAGACAAAATTAAAAGCCA
92454985 AA
1 AA
92454987 TGTGTCCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.60, C:0.15, G:0.12, T:0.13
Consensus pattern (25 bp):
AACTAGAAGACAAAATTAAAAGCCA
Found at i:92456471 original size:24 final size:24
Alignment explanation
Indices: 92456444--92456497 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
92456434 TGAAAGGTAT
*
92456444 GTATATATGTGTTTATATGTATAA
1 GTATATATGTGTTCATATGTATAA
* * *
92456468 GTATGTATGTGTTCATGTGTATAT
1 GTATATATGTGTTCATATGTATAA
92456492 GTATAT
1 GTATAT
92456498 GAAGGTGTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.02, G:0.20, T:0.50
Consensus pattern (24 bp):
GTATATATGTGTTCATATGTATAA
Found at i:92461396 original size:25 final size:25
Alignment explanation
Indices: 92461357--92461405 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
92461347 GGCCAAAATC
*
92461357 GAAGCTCGCTTTCATTTCTCTCGTT
1 GAAGCTCGCTCTCATTTCTCTCGTT
*
92461382 GAAGCTCTCTCTCATTTCTCTCGT
1 GAAGCTCGCTCTCATTTCTCTCGT
92461406 CTCTAGCTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.31, G:0.14, T:0.43
Consensus pattern (25 bp):
GAAGCTCGCTCTCATTTCTCTCGTT
Found at i:92464723 original size:9 final size:9
Alignment explanation
Indices: 92464705--92464735 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
92464695 TGACAAGAAT
*
92464705 GATGATGAC
1 GATGAGGAC
92464714 GATGAGGAC
1 GATGAGGAC
92464723 GATGAGGAC
1 GATGAGGAC
92464732 GATG
1 GATG
92464736 TTTCTTCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.32, C:0.10, G:0.42, T:0.16
Consensus pattern (9 bp):
GATGAGGAC
Found at i:92477809 original size:43 final size:43
Alignment explanation
Indices: 92477748--92477836 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
92477738 AATCTAACTT
92477748 ATTTTTAACTACCTCTTTTATTTGTCCACAAAACAAAAATTAC
1 ATTTTTAACTACCTCTTTTATTTGTCCACAAAACAAAAATTAC
92477791 ATTTTTAACTACCTCTTTTATTTGTCCACAAAACAAAAATTAC
1 ATTTTTAACTACCTCTTTTATTTGTCCACAAAACAAAAATTAC
92477834 ATT
1 ATT
92477837 ATCTATAGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.40
Consensus pattern (43 bp):
ATTTTTAACTACCTCTTTTATTTGTCCACAAAACAAAAATTAC
Found at i:92480436 original size:23 final size:24
Alignment explanation
Indices: 92480392--92480447 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
92480382 TGAGTATTTA
*
92480392 AATGTATAT-ATTTAATTGAATTG
1 AATGTATATGATTTAATTAAATTG
*
92480415 AATGTATATGATTTGA-TAAATTG
1 AATGTATATGATTTAATTAAATTG
92480438 AAT-TAT-TGAT
1 AATGTATATGAT
92480448 CATTAAATGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 4 0.13
22 3 0.10
23 18 0.60
24 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.46
Consensus pattern (24 bp):
AATGTATATGATTTAATTAAATTG
Found at i:92482629 original size:20 final size:20
Alignment explanation
Indices: 92482604--92482653 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
92482594 AGATCATATT
*
92482604 GAGAGATTGAATTTATTTCA
1 GAGAGATTAAATTTATTTCA
92482624 GAGAGATTAAATTTATTTCA
1 GAGAGATTAAATTTATTTCA
92482644 GAGAGATTAA
1 GAGAGATTAA
92482654 GGATATTGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.40, C:0.04, G:0.20, T:0.36
Consensus pattern (20 bp):
GAGAGATTAAATTTATTTCA
Found at i:92482660 original size:20 final size:20
Alignment explanation
Indices: 92482617--92482660 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
92482607 AGATTGAATT
**
92482617 TATTTCAGAGAGATTAAATT
1 TATTTCAGAGAGATTAAAGA
*
92482637 TATTTCAGAGAGATTAAGGA
1 TATTTCAGAGAGATTAAAGA
92482657 TATT
1 TATT
92482661 GAGGGTAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.18, T:0.39
Consensus pattern (20 bp):
TATTTCAGAGAGATTAAAGA
Found at i:92487991 original size:16 final size:16
Alignment explanation
Indices: 92487972--92488002 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92487962 CTAGTTTTTT
*
92487972 AAAATTGTAAATTATA
1 AAAATTATAAATTATA
92487988 AAAATTATAAATTAT
1 AAAATTATAAATTAT
92488003 TGTAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
AAAATTATAAATTATA
Found at i:92488019 original size:19 final size:19
Alignment explanation
Indices: 92487995--92488051 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 19
92487985 ATAAAAATTA
92487995 TAAATTATTGTAATTTTTT
1 TAAATTATTGTAATTTTTT
* * *
92488014 TAAATTATAG-AAATATTT
1 TAAATTATTGTAATTTTTT
* *
92488032 TAAA-TGTTATAATTTTTT
1 TAAATTATTGTAATTTTTT
92488050 TA
1 TA
92488052 CAAAATACTT
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
17 2 0.07
18 18 0.62
19 9 0.31
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
TAAATTATTGTAATTTTTT
Found at i:92488019 original size:35 final size:36
Alignment explanation
Indices: 92487979--92488051 Score: 96
Period size: 36 Copynumber: 2.1 Consensus size: 36
92487969 TTTAAAATTG
*
92487979 TAAATTATA-AAA-ATTATAAATTATTGTAATTTTTT
1 TAAATTATAGAAATATTATAAA-TATTATAATTTTTT
* *
92488014 TAAATTATAGAAATATTTTAAATGTTATAATTTTTT
1 TAAATTATAGAAATATTATAAATATTATAATTTTTT
92488050 TA
1 TA
92488052 CAAAATACTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
35 9 0.27
36 17 0.52
37 7 0.21
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (36 bp):
TAAATTATAGAAATATTATAAATATTATAATTTTTT
Found at i:92491070 original size:22 final size:22
Alignment explanation
Indices: 92491012--92491070 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
92491002 GAATGGTATC
92491012 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
92491034 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
92491057 TACATATCAAATCT
1 TACAAATCAAATCT
92491071 ACGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:92496204 original size:22 final size:22
Alignment explanation
Indices: 92496146--92496204 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
92496136 GAATGGTATC
92496146 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
92496168 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
92496191 TACATATCAAATCT
1 TACAAATCAAATCT
92496205 ACGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:92496609 original size:3 final size:3
Alignment explanation
Indices: 92496601--92496626 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
92496591 GCAACGCCAA
92496601 CAG CAG CAG CAG CAG CAG CAG CAG CA
1 CAG CAG CAG CAG CAG CAG CAG CAG CA
92496627 AGCTGAGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.35, G:0.31, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:92502079 original size:18 final size:18
Alignment explanation
Indices: 92502056--92502091 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
92502046 TATAGAAGTC
*
92502056 AAACTTTCTAGCAGAATA
1 AAACTTTCTAGCAAAATA
92502074 AAACTTTCTAGCAAAATA
1 AAACTTTCTAGCAAAATA
92502092 GGTAAAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (18 bp):
AAACTTTCTAGCAAAATA
Found at i:92504142 original size:87 final size:87
Alignment explanation
Indices: 92503996--92504165 Score: 313
Period size: 87 Copynumber: 2.0 Consensus size: 87
92503986 ATGAAACAAC
*
92503996 TTTGAATATCATGAACGTGCGAACCAAAATCCAAACAACTTTTTTCTTTGATATTCGACATTGAC
1 TTTGAACATCATGAACGTGCGAACCAAAATCCAAACAACTTTTTTCTTTGATATTCGACATTGAC
92504061 CATTAGATAGACTTAAATGTTG
66 CATTAGATAGACTTAAATGTTG
* *
92504083 TTTGAACATCATGAACGTGTGAACCAAAATCCAAACAATTTTTTTCTTTGATATTCGACATTGAC
1 TTTGAACATCATGAACGTGCGAACCAAAATCCAAACAACTTTTTTCTTTGATATTCGACATTGAC
92504148 CATTAGATAGACTTAAAT
66 CATTAGATAGACTTAAAT
92504166 CTAAGATATG
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (87 bp):
TTTGAACATCATGAACGTGCGAACCAAAATCCAAACAACTTTTTTCTTTGATATTCGACATTGAC
CATTAGATAGACTTAAATGTTG
Found at i:92507915 original size:50 final size:50
Alignment explanation
Indices: 92507746--92508071 Score: 277
Period size: 48 Copynumber: 6.8 Consensus size: 50
92507736 ACATTTGGGT
* * * ** *
92507746 GATATGTGTGCTAGTGTAAGA-CATGTCTGAGACAT-GCATCAGCCAC-A
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGA
* * * * *
92507793 -TTATGAGAGCCAGTGTAAGACCATGTATGGGACATGGCATTGGCATTGA
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGA
* * * *
92507842 G--ACGAGAGCTAGTATAAGACCATGTTTGGGACATGGCATTGGCCTCAA
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGA
* *
92507890 GATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGG-CTTGA
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGA
* * *
92507939 G--ATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGA
* * * * *
92507985 TATGTGAGAG-TCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTTGA
1 GATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGA
* * *
92508035 TG-TGTGA-A-CCAGTGTAAGACCATGTCTAGGACATGGC
1 -GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
92508072 GTCGGCATCT
Statistics
Matches: 225, Mismatches: 40, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
45 31 0.14
46 21 0.09
47 15 0.07
48 76 0.34
49 6 0.03
50 76 0.34
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (50 bp):
GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGA
Found at i:92508001 original size:95 final size:96
Alignment explanation
Indices: 92507756--92508077 Score: 370
Period size: 95 Copynumber: 3.4 Consensus size: 96
92507746 GATATGTGTG
* * *
92507756 CTAGTGTAAGA-CATGTCTGAGACAT-GCATCAGCCACAT-TATGAGAGCCAGTGTAAGACCATG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATATATGAGAG-CAGTGTAAGACCATG
* * * *
92507818 TATGGGACATGGCATTGGCATTGAGACGAGAG
65 TCTGGGACATGGCATTGGCATTGAGATGTGAT
* * * * *
92507850 CTAGTATAAGACCATGTTTGGGACATGGCATTGGCCTCAAGATATGAAAGCTAGTGTAAGACCAT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC-ATATATGAGAGC-AGTGTAAGACCAT
92507915 GTCTGGGACATGGCATTGGC-TTGAGATGTG-T
64 GTCTGGGACATGGCATTGGCATTGAGATGTGAT
*
92507946 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGAGTCAGTGTAAGACCAT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC-ATATATGAGAG-CAGTGTAAGACCAT
* * *
92508010 GTCTGGGACATGGCATTGACTTTGATG-TGTGAA
64 GTCTGGGACATGGCATTGGCATTGA-GATGTGAT
* * *
92508043 CCAGTGTAAGACCATGTCTAGGACATGGCGTCGGC
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
92508078 ATCTTACCCT
Statistics
Matches: 195, Mismatches: 23, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
94 10 0.05
95 85 0.44
96 18 0.09
97 12 0.06
98 70 0.36
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (96 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATATATGAGAGCAGTGTAAGACCATGT
CTGGGACATGGCATTGGCATTGAGATGTGAT
Found at i:92508060 original size:143 final size:143
Alignment explanation
Indices: 92507803--92508071 Score: 339
Period size: 143 Copynumber: 1.9 Consensus size: 143
92507793 TTATGAGAGC
* * *
92507803 CAGTGTAAGACCATGTATGGGACATGGCATTGGCATTGAGACGAGAGCTAGTATAAGACCATGTT
1 CAGTGTAAGACCATGTATGGGACATGGCATCGGCATCGAGACGAGAGCTAGTATAAGACCATGTC
* * *
92507868 TGGGACATGGCATTGGCCTCAAGATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATTG
66 TGGGACATGGCATTGGACTCAAGATATGAAAGCCAGTGTAAGACCATGTCTAGGACATGGCATTG
92507933 GCTTGAGATGTGT
131 GCTTGAGATGTGT
* * * * *
92507946 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGAG-TCAGTGTAAGACCAT
1 CAGTGTAAGACCATGTATGGGACATGGCATCGGCATCGAGA--CGAGAGCT-AGTATAAGACCAT
** * *
92508010 GTCTGGGACATGGCATT-GACT-TTGATGTGTGAA-CCAGTGTAAGACCATGTCTAGGACATGGC
63 GTCTGGGACATGGCATTGGACTCAAGATATG-AAAGCCAGTGTAAGACCATGTCTAGGACATGGC
92508072 GTCGGCATCT
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
143 68 0.64
144 6 0.06
145 33 0.31
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (143 bp):
CAGTGTAAGACCATGTATGGGACATGGCATCGGCATCGAGACGAGAGCTAGTATAAGACCATGTC
TGGGACATGGCATTGGACTCAAGATATGAAAGCCAGTGTAAGACCATGTCTAGGACATGGCATTG
GCTTGAGATGTGT
Found at i:92511094 original size:44 final size:44
Alignment explanation
Indices: 92511027--92511117 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
92511017 ATTTGCAGGT
* **
92511027 AAAATAATATTAAAGTAACCTACACTAATTAGAGTTTAAG-TGG
1 AAAATAATATTAAAGTAACCTACAATAACCAGAGTTTAAGTTGG
*
92511070 AAAACTAATATTAAAGTAACCTACAATAACCAGAGTTTACGTTGG
1 AAAA-TAATATTAAAGTAACCTACAATAACCAGAGTTTAAGTTGG
92511115 AAA
1 AAA
92511118 CGAAAAGCAG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 4 0.10
44 32 0.76
45 6 0.14
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.27
Consensus pattern (44 bp):
AAAATAATATTAAAGTAACCTACAATAACCAGAGTTTAAGTTGG
Found at i:92513543 original size:151 final size:147
Alignment explanation
Indices: 92513261--92513546 Score: 340
Period size: 151 Copynumber: 1.9 Consensus size: 147
92513251 CACGGCTTGA
* * * *
92513261 CCCAATAACCCACACGTGTGGCCCACACGCCCAACTTAGCCTGACCTGTGTGGCCCACACGGCCA
1 CCCAATAACCCACACGTGTGACCCACACGCCCAAATTAGCCTGACCCGTGTGGCCCACACGACCA
* * * ***
92513326 CACTCAAGCCACTACACGACCGTGTCTTGTGTACGGCCATGACTTCATCAATCACACGGTTGTGT
66 CACTCAAGCCACCACACAACCGTGTCTTGCGTACGGCCATGACTTCATCAATCACACGGCAATGT
92513391 CCTCATACACGGTCTGG
131 CCTCATACACGGTCTGG
* *
92513408 CCCAATAACCCACACGCCCGTGTGACCCACATGCCCAAATTGGCCT-AGCCCGTGTGGCCCACAC
1 CCCAATAACCCACA----CGTGTGACCCACACGCCCAAATTAGCCTGA-CCCGTGTGGCCCACAC
* * * * * * * *
92513472 GACTACACTCAAGCCACCACACAATCGTGTCTTGCGTATGGCCATGCCTTCGTCAGTTATACGGC
61 GACCACACTCAAGCCACCACACAACCGTGTCTTGCGTACGGCCATGACTTCATCAATCACACGGC
92513537 AATGTCCTCA
126 AATGTCCTCA
92513547 CACAGCCTAC
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
147 14 0.12
150 1 0.01
151 99 0.87
ACGTcount: A:0.23, C:0.37, G:0.20, T:0.20
Consensus pattern (147 bp):
CCCAATAACCCACACGTGTGACCCACACGCCCAAATTAGCCTGACCCGTGTGGCCCACACGACCA
CACTCAAGCCACCACACAACCGTGTCTTGCGTACGGCCATGACTTCATCAATCACACGGCAATGT
CCTCATACACGGTCTGG
Found at i:92514036 original size:7 final size:7
Alignment explanation
Indices: 92513997--92514034 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
92513987 TGAGAGAAAC
92513997 AAAAGAG
1 AAAAGAG
92514004 AAAAGAG
1 AAAAGAG
*
92514011 GAAAGAG
1 AAAAGAG
92514018 AAAAGAG
1 AAAAGAG
*
92514025 AAAGGAG
1 AAAAGAG
92514032 AAA
1 AAA
92514035 GGGAACGCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (7 bp):
AAAAGAG
Found at i:92514792 original size:33 final size:33
Alignment explanation
Indices: 92514750--92514816 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
92514740 GCCTCAACAT
92514750 CGAAACATGAAAAACATCATGGATATGATCTAA
1 CGAAACATGAAAAACATCATGGATATGATCTAA
*
92514783 CGAAACATGAAAAACATCATGGATATGGTCTAA
1 CGAAACATGAAAAACATCATGGATATGATCTAA
92514816 C
1 C
92514817 TCTGGAGGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.21
Consensus pattern (33 bp):
CGAAACATGAAAAACATCATGGATATGATCTAA
Found at i:92521107 original size:26 final size:26
Alignment explanation
Indices: 92521077--92521129 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
92521067 ACCATTATTA
92521077 AGTTTA-TATATTAT-TTCATTAAGGAT
1 AGTTTAGTA-ATTATGTT-ATTAAGGAT
*
92521103 AGTTTAGTAATTATGTTATTAATGAT
1 AGTTTAGTAATTATGTTATTAAGGAT
92521129 A
1 A
92521130 ATAAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (26 bp):
AGTTTAGTAATTATGTTATTAAGGAT
Found at i:92522133 original size:44 final size:43
Alignment explanation
Indices: 92522066--92522217 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 43
92522056 TGTTATCTTA
* * * *
92522066 TAAGACCACGTCTAGGACGTTGGCATCGAT-TCGTGATTTACGTG
1 TAAGACCATGTCTGGGACATTGGCATCGATAT-ATGATTT-CGTG
*
92522110 TATGACCATGTCTGGGACATTGGCATCG-TATATGATTTCGTG
1 TAAGACCATGTCTGGGACATTGGCATCGATATATGATTTCGTG
* * * * * * *
92522152 TAAGACCCTGTCTGAGATAGTGGCATCGATATTTGATTACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATATGATTTCGTG
* * *
92522195 TAAGATCACGTCTGGGATATTGG
1 TAAGACCATGTCTGGGACATTGG
92522218 TATTGCACAA
Statistics
Matches: 88, Mismatches: 18, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 27 0.31
43 36 0.41
44 25 0.28
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATCGATATATGATTTCGTG
Found at i:92524534 original size:7 final size:7
Alignment explanation
Indices: 92524519--92524556 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
92524509 TGAGAGAAAC
92524519 AAAAGAG
1 AAAAGAG
*
92524526 AACAGAG
1 AAAAGAG
*
92524533 AAGAGAG
1 AAAAGAG
92524540 AAAAGAG
1 AAAAGAG
92524547 AAAAGAG
1 AAAAGAG
92524554 AAA
1 AAA
92524557 GGGAACGTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.68, C:0.03, G:0.29, T:0.00
Consensus pattern (7 bp):
AAAAGAG
Found at i:92525905 original size:44 final size:44
Alignment explanation
Indices: 92525842--92525932 Score: 164
Period size: 44 Copynumber: 2.1 Consensus size: 44
92525832 GTAGGTCAAA
92525842 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTGGAAAAC
1 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTGGAAAAC
* *
92525886 TAATATTAAAGTAACCTACACTAATCAGAGTTTAAGTGGGAAAC
1 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTGGAAAAC
92525930 TAA
1 TAA
92525933 CAATAGAATT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.27
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTGGAAAAC
Found at i:92528441 original size:14 final size:14
Alignment explanation
Indices: 92528422--92528449 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
92528412 TAGCTTGTAG
92528422 CATCTAGATAAAAA
1 CATCTAGATAAAAA
92528436 CATCTAGATAAAAA
1 CATCTAGATAAAAA
92528450 GATAAGGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.14, G:0.07, T:0.21
Consensus pattern (14 bp):
CATCTAGATAAAAA
Found at i:92531196 original size:57 final size:58
Alignment explanation
Indices: 92531104--92531221 Score: 193
Period size: 57 Copynumber: 2.1 Consensus size: 58
92531094 ATAGAAATGG
* *
92531104 TGAAAATGGAGAAATGAGAAACATTTGGAACTGAATATGGTTTTTTCCAAAATGAAAA
1 TGAAAATGGAGAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAA
* *
92531162 TGAAAATGGAGAAATG-GAAACATTTGGAAATGAATGTGGTTTTCTCCACAATGAAAA
1 TGAAAATGGAGAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAA
92531219 TGA
1 TGA
92531222 CCTAGAAATG
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
57 40 0.71
58 16 0.29
ACGTcount: A:0.43, C:0.08, G:0.22, T:0.27
Consensus pattern (58 bp):
TGAAAATGGAGAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAA
Found at i:92549046 original size:46 final size:47
Alignment explanation
Indices: 92548976--92549203 Score: 304
Period size: 46 Copynumber: 5.0 Consensus size: 47
92548966 TTTGACGTGA
* * * * * *
92548976 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
** * **
92549022 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACCT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
92549068 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
92549114 TGCCATGGTATCTTTCAACCATGGTCTTACGCA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
92549160 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAG
92549204 AGAGCACACT
Statistics
Matches: 165, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
45 5 0.03
46 160 0.97
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
Found at i:92551090 original size:18 final size:18
Alignment explanation
Indices: 92551069--92551106 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
92551059 CTATTGATAA
92551069 TAATCTTTAACTTGATTT
1 TAATCTTTAACTTGATTT
92551087 TAATCTTTAACTTGATTT
1 TAATCTTTAACTTGATTT
92551105 TA
1 TA
92551107 TCTCCCCTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.11, G:0.05, T:0.55
Consensus pattern (18 bp):
TAATCTTTAACTTGATTT
Found at i:92567456 original size:24 final size:26
Alignment explanation
Indices: 92567420--92567473 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
92567410 TATAATAAAT
92567420 AAAATAAATAAAA-GAAAAGAAAGCAA
1 AAAATAAATAAAATG-AAAGAAAGCAA
*
92567446 AAAAT-AA-AAAATGAAGGAAAGCAA
1 AAAATAAATAAAATGAAAGAAAGCAA
92567470 AAAA
1 AAAA
92567474 AATTATTCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 18 0.69
25 3 0.12
26 5 0.19
ACGTcount: A:0.76, C:0.04, G:0.13, T:0.07
Consensus pattern (26 bp):
AAAATAAATAAAATGAAAGAAAGCAA
Found at i:92568630 original size:142 final size:143
Alignment explanation
Indices: 92568382--92568649 Score: 328
Period size: 142 Copynumber: 1.9 Consensus size: 143
92568372 GTAGCCTGAT
* * * * ** *
92568382 TTCGTTTTAAAGGTTTAGCCTGAGCAGCTAACCTTACATGTATATTTACAAGTTTGGCTAAGCTA
1 TTCGTTTTAAAGGTTCAGCCGGAGCAGCTAACCTGACATGTATATTTACAACTTTAACCAAGCTA
*
92568447 TTTGATGTGTTGATAAAGGTTTAGCCAAAACGAATAACCTGACACTAA-TATATGTATAGCTTGG
66 TTTGATGTGTCGATAAAGGTTTAGCCAAAACGAATAACCTGACAC-AATTATATGTATAGCTTGG
92568511 ATGAGCAACCTAAG
130 ATGAGCAACCTAAG
*
92568525 TTCGTTTTAAAGGTTCAGCCCGGA-CAGGTAACCTGATC-TGTATA-TTACAACTTTAACCAAGC
1 TTCGTTTTAAAGGTTCAG-CCGGAGCAGCTAACCTGA-CATGTATATTTACAACTTTAACCAAGC
* * * * ** * *
92568587 TATTTGATGTGTCGGTGAAGGTTTAGCCTAGACGGGTAGCCTGACACAATTATATGTTTAGCT
64 TATTTGATGTGTCGATAAAGGTTTAGCCAAAACGAATAACCTGACACAATTATATGTATAGCT
92568650 CCGACAAGCA
Statistics
Matches: 105, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
141 2 0.02
142 65 0.62
143 33 0.31
144 5 0.05
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (143 bp):
TTCGTTTTAAAGGTTCAGCCGGAGCAGCTAACCTGACATGTATATTTACAACTTTAACCAAGCTA
TTTGATGTGTCGATAAAGGTTTAGCCAAAACGAATAACCTGACACAATTATATGTATAGCTTGGA
TGAGCAACCTAAG
Found at i:92569261 original size:26 final size:26
Alignment explanation
Indices: 92569232--92569339 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
92569222 TGGTACAAAT
92569232 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
92569258 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92569284 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
92569310 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92569336 TGAT
1 TGAT
92569340 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:92576467 original size:14 final size:13
Alignment explanation
Indices: 92576436--92576473 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
92576426 TATCTTGAAA
92576436 AATTAA-AACAAG
1 AATTAAGAACAAG
*
92576448 AATTAAGAACACAT
1 AATTAAGAACA-AG
92576462 AATTAAGAACAA
1 AATTAAGAACAA
92576474 ATCAAGTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 6 0.26
13 5 0.22
14 12 0.52
ACGTcount: A:0.63, C:0.11, G:0.08, T:0.18
Consensus pattern (13 bp):
AATTAAGAACAAG
Found at i:92576903 original size:49 final size:48
Alignment explanation
Indices: 92576831--92576941 Score: 136
Period size: 49 Copynumber: 2.3 Consensus size: 48
92576821 GCTCGATAGG
* * * *
92576831 GACACGCCCGTGTGAGGTGGCTTAGGCTGTGTTTAGAGTCTGCTAAATA
1 GACACGGCCGTGTGAGGTGGCTTAGGCCGTG-TTACAATCTGCTAAATA
*
92576880 GACACGGCCGTGTG-GTGTGGCTTAGGCCGTGTTACAATCTGTTAAATA
1 GACACGGCCGTGTGAG-GTGGCTTAGGCCGTGTTACAATCTGCTAAATA
92576928 GACACAGG-CGTGTG
1 GACAC-GGCCGTGTG
92576942 TTCTAGCCAT
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
48 26 0.47
49 29 0.53
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.27
Consensus pattern (48 bp):
GACACGGCCGTGTGAGGTGGCTTAGGCCGTGTTACAATCTGCTAAATA
Found at i:92577764 original size:4 final size:4
Alignment explanation
Indices: 92577755--92577819 Score: 112
Period size: 4 Copynumber: 16.2 Consensus size: 4
92577745 TTACTACTAA
* *
92577755 TATG TATG TATG TACG TATG TATG TATG CATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
92577803 TATG TATG TATG TATG T
1 TATG TATG TATG TATG T
92577820 TTTTTTAAGA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 57 1.00
ACGTcount: A:0.25, C:0.03, G:0.25, T:0.48
Consensus pattern (4 bp):
TATG
Found at i:92588863 original size:13 final size:13
Alignment explanation
Indices: 92588845--92588887 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
92588835 AAGGGGTTTG
92588845 AAACTCTAATCAC
1 AAACTCTAATCAC
* *
92588858 AAACTC-AGT-AG
1 AAACTCTAATCAC
92588869 AAACTCTAATCAC
1 AAACTCTAATCAC
92588882 AAACTC
1 AAACTC
92588888 AGTAGACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 7 0.29
12 4 0.17
13 13 0.54
ACGTcount: A:0.47, C:0.28, G:0.05, T:0.21
Consensus pattern (13 bp):
AAACTCTAATCAC
Found at i:92588876 original size:24 final size:24
Alignment explanation
Indices: 92588844--92588893 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
92588834 TAAGGGGTTT
92588844 GAAACTCTAATCACAAACTCAGTA
1 GAAACTCTAATCACAAACTCAGTA
92588868 GAAACTCTAATCACAAACTCAGTA
1 GAAACTCTAATCACAAACTCAGTA
92588892 GA
1 GA
92588894 CTCAACAGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.24, G:0.10, T:0.20
Consensus pattern (24 bp):
GAAACTCTAATCACAAACTCAGTA
Found at i:92594729 original size:49 final size:48
Alignment explanation
Indices: 92594649--92594778 Score: 170
Period size: 49 Copynumber: 2.6 Consensus size: 48
92594639 GGTTCATATG
* * *
92594649 CCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTTTATATAGCGAGA
1 CCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAGCG-GA
* * * *
92594699 CCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCGGT
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGGA
92594747 CTCGATGCCATGTCCCAGACAGGTCTTACACT
1 C-CGATGCCATGTCCCAGACAGGTCTTACACT
92594779 AACAGAGCAC
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
48 2 0.03
49 51 0.72
50 18 0.25
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGGA
Found at i:92594907 original size:46 final size:46
Alignment explanation
Indices: 92594847--92595013 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 46
92594837 GAGGCCAATA
*
92594847 CATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAATGCTGATG
1 CATGTCCTAGACATGTCTTACACTAGCTCTCATCTCAATGCTGATG
* * * **
92594893 CATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTCGAA-GCCAATG
1 CATGTCCTAGACATGTCTTACACTAGCTCT---CATCTC-AATGCTGATG
* * *
92594941 CATGTCCTAGACATGTCTTACATTGGCTCTCATGCT--GTGGCTGATG
1 CATGTCCTAGACATGTCTTACACTAGCTCTCAT-CTCAAT-GCTGATG
*
92594987 CATGTCCTAAACATGTCTTACACTAGC
1 CATGTCCTAGACATGTCTTACACTAGC
92595014 ACACATATCA
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
45 1 0.01
46 57 0.58
47 2 0.02
48 35 0.36
49 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (46 bp):
CATGTCCTAGACATGTCTTACACTAGCTCTCATCTCAATGCTGATG
Found at i:92594938 original size:94 final size:94
Alignment explanation
Indices: 92594805--92595013 Score: 269
Period size: 94 Copynumber: 2.2 Consensus size: 94
92594795 ATGCCATATT
* ** *
92594805 CCAGACAGGTCTTACACTAGCTTGTATATCGCGAGGCCAATACATGTCCTAGACATGTCTTACAC
1 CCAGACATGTCTTACACTAGCTTAAATATCGCGAAGCCAATACATGTCCTAGACATGTCTTACAC
*
92594870 TAGCTCTCGT-CTCAAT-GCTGATGCATGTC
66 TAGCTCTCATGCT--ATGGCTGATGCATGTC
* * * *
92594899 CCAGACATGTCTTACACTGGCTTAAATATCTCGAAGCCAATGCATGTCCTAGACATGTCTTACAT
1 CCAGACATGTCTTACACTAGCTTAAATATCGCGAAGCCAATACATGTCCTAGACATGTCTTACAC
* *
92594964 TGGCTCTCATGCTGTGGCTGATGCATGTC
66 TAGCTCTCATGCTATGGCTGATGCATGTC
* *
92594993 CTAAACATGTCTTACACTAGC
1 CCAGACATGTCTTACACTAGC
92595014 ACACATATCA
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
93 1 0.01
94 96 0.97
95 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (94 bp):
CCAGACATGTCTTACACTAGCTTAAATATCGCGAAGCCAATACATGTCCTAGACATGTCTTACAC
TAGCTCTCATGCTATGGCTGATGCATGTC
Done.