Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 28 of 343
Found at i:9476407 original size:11 final size:11
Alignment explanation
Indices: 9476376--9476413 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
9476366 AAATGAATAC
9476376 ATCATGTACAT
1 ATCATGTACAT
9476387 ATCA--TACAT
1 ATCATGTACAT
*
9476396 ATCATGTGCAT
1 ATCATGTACAT
9476407 ATCATGT
1 ATCATGT
9476414 CAAATCACGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
9 9 0.38
11 15 0.62
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:9476488 original size:25 final size:25
Alignment explanation
Indices: 9476460--9476507 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
9476450 ATAATTAAAC
* **
9476460 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
9476485 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
9476508 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:9484063 original size:31 final size:31
Alignment explanation
Indices: 9484023--9484108 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
9484013 TCAATCTCAG
*
9484023 CATAT-ACTGGGGCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
9484053 CATATCACTGGGCCGAAGCCTTTTCGTTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
9484084 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
9484109 TGTAACAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:9484365 original size:25 final size:24
Alignment explanation
Indices: 9484326--9484396 Score: 97
Period size: 24 Copynumber: 2.9 Consensus size: 24
9484316 CCTCTTTTAA
9484326 TAACTGGGGCAAAAGCCCTTTTCGG
1 TAACTGGGGC-AAAGCCCTTTTCGG
* *
9484351 TAAACTGGGGCAAAGCCCATTTCTG
1 T-AACTGGGGCAAAGCCCTTTTCGG
*
9484376 TAACTGGGGCATAGCCCTTTT
1 TAACTGGGGCAAAGCCCTTTT
9484397 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
24 18 0.44
25 14 0.34
26 9 0.22
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (24 bp):
TAACTGGGGCAAAGCCCTTTTCGG
Found at i:9484474 original size:11 final size:11
Alignment explanation
Indices: 9484443--9484490 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
9484433 AAATGAATAC
9484443 ATCATGTGCAT
1 ATCATGTGCAT
*
9484454 ATCA--TACAT
1 ATCATGTGCAT
9484463 ATCATGTGCAT
1 ATCATGTGCAT
*
9484474 ATCATGT-CAA
1 ATCATGTGCAT
9484484 ATCATGT
1 ATCATGT
9484491 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:9484571 original size:25 final size:26
Alignment explanation
Indices: 9484527--9484575 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
9484517 ATAATTGAAC
*
9484527 CCTAGGGGTAAAAATGGTCATTTTTA
1 CCTAGGGGTAAAAATAGTCATTTTTA
9484553 CCTAGGGGT-AAAATAGTCATTTT
1 CCTAGGGGTAAAAATAGTCATTTT
9484576 CATATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAAAATAGTCATTTTTA
Found at i:9488206 original size:5 final size:6
Alignment explanation
Indices: 9488175--9488216 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
9488165 TAAAAACATG
* * *
9488175 AAATAA AAATGA AAATGA AAATAA AAAT-A AAATAA AATTAA A
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA A
9488217 CATCATCATC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:9493902 original size:14 final size:13
Alignment explanation
Indices: 9493879--9493910 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
9493869 GGAATATCAA
9493879 AACAATAATTAAG
1 AACAATAATTAAG
9493892 AACACATAATTAAG
1 AACA-ATAATTAAG
9493906 AACAA
1 AACAA
9493911 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:9496030 original size:19 final size:18
Alignment explanation
Indices: 9495999--9496038 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
9495989 ACCGTGTTGA
9495999 TTTCCCATGTTGGCCCAT
1 TTTCCCATGTTGGCCCAT
* *
9496017 TTTCTCCATTTTGGCCCGT
1 TTTC-CCATGTTGGCCCAT
9496036 TTT
1 TTT
9496039 TCGCTCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.07, C:0.30, G:0.15, T:0.47
Consensus pattern (18 bp):
TTTCCCATGTTGGCCCAT
Found at i:9497225 original size:43 final size:43
Alignment explanation
Indices: 9497178--9497322 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 43
9497168 TCCCATATAT
* * *
9497178 GGTCTTACATGTTATC-ACATATCGATGCCATTGTCCCAGACAG
1 GGTCTTACATGTAATCGA-ATAACGATGCCAATGTCCCAGACAG
* * * *
9497221 GGTCTTACACGAAATCGATTAACGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAATCGAATAACGATGCCAATGTCCCAGACAG
* * * *
9497264 GGTCTTACATGTAACCTC-AATAA-AATGCCAATGTCTCAAACAT
1 GGTCTTACATGTAA--TCGAATAACGATGCCAATGTCCCAGACAG
*
9497307 GGTCTTACATATAATC
1 GGTCTTACATGTAATC
9497323 ACATCTCAAT
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
41 2 0.02
43 76 0.89
44 5 0.06
45 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTAATCGAATAACGATGCCAATGTCCCAGACAG
Found at i:9521244 original size:48 final size:48
Alignment explanation
Indices: 9521176--9521321 Score: 202
Period size: 48 Copynumber: 3.0 Consensus size: 48
9521166 TGGTAGAATA
* * *
9521176 CCAATGCCATATCCCGGATATGGTCTTACATGGGATCACATATCGATG
1 CCAATACCATGTCCCAGATATGGTCTTACATGGGATCACATATCGATG
* *
9521224 CCAATATCATGTCCTAGATATGGTCTTACATGGGATCACATATCGATG
1 CCAATACCATGTCCCAGATATGGTCTTACATGGGATCACATATCGATG
* ** * *
9521272 CCAATGCCATGTCCCAGACGTGGTCTTACATGGGATCGCATATCGGTG
1 CCAATACCATGTCCCAGATATGGTCTTACATGGGATCACATATCGATG
9521320 CC
1 CC
9521322 GATAGCCAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (48 bp):
CCAATACCATGTCCCAGATATGGTCTTACATGGGATCACATATCGATG
Found at i:9528867 original size:24 final size:25
Alignment explanation
Indices: 9528828--9528917 Score: 85
Period size: 24 Copynumber: 3.6 Consensus size: 25
9528818 CTTACCGATA
9528828 TATCAGCTCATAAGAGCTTACT-GT
1 TATCAGCTCATAAGAGCTTACTGGT
* * *
9528852 TCTCAGCTCGTCAGAGCTTACTGGT
1 TATCAGCTCATAAGAGCTTACTGGT
* * *
9528877 TATCAGCTCAGAAGGAGTTTACTGAT
1 TATCAGCTCATAA-GAGCTTACTGGT
* *
9528903 CAT-AGCTCAAAAGAG
1 TATCAGCTCATAAGAG
9528918 TGAATACGAT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
24 22 0.42
25 19 0.36
26 12 0.23
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
TATCAGCTCATAAGAGCTTACTGGT
Found at i:9542512 original size:40 final size:40
Alignment explanation
Indices: 9542465--9542597 Score: 171
Period size: 40 Copynumber: 3.3 Consensus size: 40
9542455 TCTCAGTCTC
* * * *
9542465 GCACACTAAGTG-TCATATATAACCAAAGCTATTCTGATTT
1 GCACACTAAGTGCT-TTATATAGCCGAAGCTATTCTGATAT
* * *
9542505 GCACACTAAGTGCTTTATATAGCCGAAGTTATCCTGATAC
1 GCACACTAAGTGCTTTATATAGCCGAAGCTATTCTGATAT
9542545 GCACACTAAGTGCTTTATATAGCCGAAGCTA-TCTCGATAT
1 GCACACTAAGTGCTTTATATAGCCGAAGCTATTCT-GATAT
9542585 GCACACTAAGTGC
1 GCACACTAAGTGC
9542598 CAAACATAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 78 0.96
41 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.29
Consensus pattern (40 bp):
GCACACTAAGTGCTTTATATAGCCGAAGCTATTCTGATAT
Found at i:9544760 original size:40 final size:40
Alignment explanation
Indices: 9544682--9544905 Score: 274
Period size: 40 Copynumber: 5.5 Consensus size: 40
9544672 ACCCAAGTAT
* *
9544682 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
9544721 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
9544761 CTTTGGGGCTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** *
9544801 CTTTAGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
9544844 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
9544884 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
9544906 CATCCGAATA
Statistics
Matches: 161, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 12 0.07
40 114 0.71
41 1 0.01
43 34 0.21
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:9544878 original size:83 final size:80
Alignment explanation
Indices: 9544682--9544905 Score: 281
Period size: 83 Copynumber: 2.8 Consensus size: 80
9544672 ACCCAAGTAT
* * * *
9544682 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
9544746 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* * * ** *
9544761 CTTTGGGGCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTTAGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
9544825 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
9544844 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
9544906 CATCCGAATA
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
79 11 0.09
80 47 0.39
83 63 0.52
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:9546253 original size:22 final size:23
Alignment explanation
Indices: 9546221--9546266 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
9546211 ATCACCCCTC
9546221 CCTTTTCATTTCT-TTATTACTAA
1 CCTTTTCATTT-TATTATTACTAA
*
9546244 CCTTTT-ATTTTATTATTTCTAA
1 CCTTTTCATTTTATTATTACTAA
9546266 C
1 C
9546267 ATAAAACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 14 0.67
23 6 0.29
ACGTcount: A:0.22, C:0.20, G:0.00, T:0.59
Consensus pattern (23 bp):
CCTTTTCATTTTATTATTACTAA
Found at i:9550910 original size:93 final size:93
Alignment explanation
Indices: 9550798--9550969 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
9550788 CGCCCATAAG
* *
9550798 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
9550863 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
9550891 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
9550956 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
9550970 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:9550966 original size:46 final size:46
Alignment explanation
Indices: 9550791--9550966 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
9550781 TGTAACCCGC
* * *
9550791 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
9550837 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
9550887 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
9550930 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
9550967 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:9558465 original size:93 final size:93
Alignment explanation
Indices: 9558353--9558524 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
9558343 CGCCCATAAG
* *
9558353 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
9558418 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
9558446 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
9558511 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
9558525 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:9558521 original size:46 final size:46
Alignment explanation
Indices: 9558346--9558521 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
9558336 TGTAACCCGC
* * *
9558346 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
9558392 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
9558442 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
9558485 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
9558522 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:9563167 original size:40 final size:40
Alignment explanation
Indices: 9563089--9563312 Score: 247
Period size: 40 Copynumber: 5.5 Consensus size: 40
9563079 ACCCAAGTAT
* * *
9563089 CTTCGGGATTTAG-CCAGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
9563128 CTTCGGGTCTTAGCTCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
9563168 CTTCGGGGCTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** *
9563208 CTTTAGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * * *
9563251 CTTCGGCACTTAGCCCGGATATAGTAACTTGTACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
9563291 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
9563313 CATCCGAATA
Statistics
Matches: 155, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
39 12 0.08
40 109 0.70
41 1 0.01
43 33 0.21
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:9564660 original size:22 final size:23
Alignment explanation
Indices: 9564628--9564673 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
9564618 ATCACCCCTC
9564628 CCTTTTCATTTCT-TTATTACTAA
1 CCTTTTCATTT-TATTATTACTAA
*
9564651 CCTTTT-ATTTTATTATTTCTAA
1 CCTTTTCATTTTATTATTACTAA
9564673 C
1 C
9564674 ATAAAACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 14 0.67
23 6 0.29
ACGTcount: A:0.22, C:0.20, G:0.00, T:0.59
Consensus pattern (23 bp):
CCTTTTCATTTTATTATTACTAA
Found at i:9585580 original size:12 final size:12
Alignment explanation
Indices: 9585565--9585594 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
9585555 ACGGGGTTGG
9585565 ACACGGGCTGCA
1 ACACGGGCTGCA
9585577 ACACGGGCTGCA
1 ACACGGGCTGCA
9585589 ACACGG
1 ACACGG
9585595 CCATGTGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.33, G:0.33, T:0.07
Consensus pattern (12 bp):
ACACGGGCTGCA
Found at i:9592184 original size:51 final size:51
Alignment explanation
Indices: 9592124--9592227 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
9592114 TATGAGTTCA
9592124 ATATGGTTAAACTTTATGTTAGCTCATTGATTGATGTTTTAAATGTTAATT
1 ATATGGTTAAACTTTATGTTAGCTCATTGATTGATGTTTTAAATGTTAATT
9592175 ATATGGTTAAACTTTATGTTAGCTCATTGATTGATGTTTTAAATGTTAATT
1 ATATGGTTAAACTTTATGTTAGCTCATTGATTGATGTTTTAAATGTTAATT
9592226 AT
1 AT
9592228 GTTATCCATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.49
Consensus pattern (51 bp):
ATATGGTTAAACTTTATGTTAGCTCATTGATTGATGTTTTAAATGTTAATT
Found at i:9593946 original size:50 final size:49
Alignment explanation
Indices: 9593882--9594309 Score: 348
Period size: 50 Copynumber: 8.8 Consensus size: 49
9593872 ACCATGGTGA
*
9593882 TATGAGAGCAAGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAGTT
1 TATGAGAGC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAGTT
* * *
9593932 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGC-CTCA--A
1 TATGAGAGC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CAGTT
* * * * * * *
9593980 TATGTG-TCAGTGTAAGACTATGTCTGGGACATGACACCGTCACCGGTT
1 TATGAGAGCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAGTT
* *
9594028 TATGAGAGCCAGTGTAAGACCATGCCTGGGACATGGCAT-GAGC-CTC-G-A
1 TATGAGAG-CAGTGTAAGACCATGTCTGGGACATGGCATCG-GCAC-CAGTT
* * * *
9594076 TATGTG-TCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAATT
1 TATGAGAGCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAGTT
* * *
9594124 TATGAGAGCTAGTGTAAGACCATGTCTGGGATATGGAATCGGC-CTCA--A
1 TATGAGAGC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CAGTT
* * * **
9594172 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACA-TTGTT
1 TATGAGAG-CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAGTT
* * * * *
9594221 ATATGTG-TCAGTGTAATACCATGTTTGGGACATGGCATCGGCACC-GATG
1 -TATGAGAGCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAG-TT
*
9594270 TGTGAGAGCCAGTGTAAGACCATGT-TCGGGACATGGCATC
1 TATGAGAG-CAGTGTAAGACCATGTCT-GGGACATGGCATC
9594310 AGCATCTCAA
Statistics
Matches: 302, Mismatches: 51, Indels: 50
0.75 0.13 0.12
Matches are distributed among these distances:
46 62 0.21
47 4 0.01
48 93 0.31
49 9 0.03
50 134 0.44
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
TATGAGAGCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAGTT
Found at i:9594057 original size:96 final size:96
Alignment explanation
Indices: 9593892--9594210 Score: 442
Period size: 96 Copynumber: 3.3 Consensus size: 96
9593882 TATGAGAGCA
9593892 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAGTTTATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAGTTTATGAGAGCTAGTGTAAGACCATGT
9593957 CTGGGACATGACATCAGCCTCAATATGTGTC
66 CTGGGACATGACATCAGCCTCAATATGTGTC
* * ** * * * *
9593988 AGTGTAAGACTATGTCTGGGACATGACACCGTCACCGGTTTATGAGAGCCAGTGTAAGACCATGC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAGTTTATGAGAGCTAGTGTAAGACCATGT
* * *
9594053 CTGGGACATGGCATGAGCCTCGATATGTGTC
66 CTGGGACATGACATCAGCCTCAATATGTGTC
*
9594084 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAATTTATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAGTTTATGAGAGCTAGTGTAAGACCATGT
* * * *
9594149 CTGGGATATGGA-ATCGGCCTCAATATGAGAGCC
66 CTGGGACAT-GACATCAGCCTCAATAT--GTGTC
* *
9594182 AGTGTAAGACCATGTTTGGAACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
9594211 CGACATTGTT
Statistics
Matches: 191, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
96 160 0.84
97 1 0.01
98 30 0.16
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAGTTTATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGACATCAGCCTCAATATGTGTC
Found at i:9594149 original size:146 final size:142
Alignment explanation
Indices: 9593881--9594304 Score: 407
Period size: 146 Copynumber: 2.9 Consensus size: 142
9593871 GACCATGGTG
* * * *
9593881 ATATGAGAGCAAGTGTAAGACCATGTCTGGGACATGGCATTG-GCAC-CAGTTTATGAGAGCTAG
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA-TGAGC-CTC-GTATATGTG-TC-AG
* * * * *
9593944 TGTAAGACCATGTCTGGGACATGACATCAGC-CTCAA-TATGTG-TCAGTGTAAGACTATGTCTG
61 TGTAAGACCATGTCTGGGACATGGCATCGGCAC-CAATTATGAGAGCAGTGTAAGACCATGTCTG
* *
9594006 GGACATGACACCGTCAC-CGGT
125 GGACATGA-ACCGGC-CTC--A
* *
9594027 TTATGAGAGCCAGTGTAAGACCATGCCTGGGACATGGCATGAGCCTCG-ATATGTGTCAGTGTAA
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATGAGCCTCGTATATGTGTCAGTGTAA
* *
9594091 GACCATGTCTGGGACATGGCATTGGCACCAATTTATGAGAGCTAGTGTAAGACCATGTCTGGGAT
66 GACCATGTCTGGGACATGGCATCGGCACCAA-TTATGAGAGC-AGTGTAAGACCATGTCTGGGAC
*
9594156 ATGGAATCGGCCTCA
129 AT-GAACCGGCCTCA
* * * *
9594171 ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGA-CATTGTTATATGTGTCAGTGT
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-GAGCCTCG-TATATGTGTCAGTGT
* * * *
9594235 AATACCATGTTTGGGACATGGCATCGGCACCGATGTGTGAGAGCCAGTGTAAGACCATGT-TCGG
64 AAGACCATGTCTGGGACATGGCATCGGCACCAAT-TATGAGAG-CAGTGTAAGACCATGTCT-GG
9594299 GACATG
126 GACATG
9594305 GCATCAGCAT
Statistics
Matches: 235, Mismatches: 28, Indels: 31
0.80 0.10 0.11
Matches are distributed among these distances:
142 33 0.14
143 2 0.01
144 49 0.21
145 11 0.05
146 137 0.58
147 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (142 bp):
ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATGAGCCTCGTATATGTGTCAGTGTAA
GACCATGTCTGGGACATGGCATCGGCACCAATTATGAGAGCAGTGTAAGACCATGTCTGGGACAT
GAACCGGCCTCA
Found at i:9594234 original size:96 final size:96
Alignment explanation
Indices: 9593881--9594309 Score: 374
Period size: 96 Copynumber: 4.4 Consensus size: 96
9593871 GACCATGGTG
* * * *
9593881 ATATGAGAGCAAGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAGTTTATGAGAGCTAGTG
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCTGTTTAT--GAGCTAGTG
*
9593946 TAAGACCATGTCTGGGACAT-GACATCAGCCTCA
64 TAAGACCATGTCTGGGACATGGA-ATCGGCCTCA
* * * * * * * *
9593979 ATAT--GTGTCAGTGTAAGACTATGTCTGGGACATGACACCGTCACCGGTTTATGAGAGCCAGTG
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCTGTTTAT--GAGCTAGTG
* * *
9594042 TAAGACCATGCCTGGGACATGGCAT-GAGCCTCG
64 TAAGACCATGTCTGGGACATGGAATCG-GCCTCA
* * * * **
9594075 ATAT--GTGTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAATTTATGAGAGCTAGTG
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCTGTTTAT--GAGCTAGTG
*
9594138 TAAGACCATGTCTGGGATATGGAATCGGCCTCA
64 TAAGACCATGTCTGGGACATGGAATCGGCCTCA
* * * *
9594171 ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACA-TTGTTATATGTG-TCAGTG
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCTGTT-TATGAGCT-AGTG
* * *
9594234 TAATACCATGTTTGGGACATGGCATCGGCAC-CGA
64 TAAGACCATGTCTGGGACATGGAATCGGC-CTC-A
* *
9594268 TGTGTGAGAGCCAGTGTAAGACCATGT-TCGGGACATGGCATC
1 -ATATGAGAGCCAGTGTAAGACCATGTCT-GGGACATGGCATC
9594310 AGCATCTCAA
Statistics
Matches: 277, Mismatches: 43, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
95 1 0.00
96 193 0.70
97 7 0.03
98 76 0.27
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (96 bp):
ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCTGTTTATGAGCTAGTGTA
AGACCATGTCTGGGACATGGAATCGGCCTCA
Found at i:9594235 original size:192 final size:191
Alignment explanation
Indices: 9593892--9594258 Score: 506
Period size: 192 Copynumber: 1.9 Consensus size: 191
9593882 TATGAGAGCA
*
9593892 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAGTTTATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAATTTATGAGAGCTAGTGTAAGACCATGT
* * * * *
9593957 CTGGGACATGACATCAGCCTCAATATGTGTCAGTGTAAGACTATGTCTGGGACATGACACCGTCA
66 CTGGGACATGACATCAGCCTCAATATGAGCCAGTGTAAGACCATGTCTGGAACATGACACCGACA
9594022 CCGGTTTATGAGAGCCAGTGTAAGACCATGCCTGGGACATGGCATGAGCCTCGATATGTGTC
131 CCGGTTTAT-AGAGCCAGTGTAAGACCATGCCTGGGACATGGCATGAGCCTCGATATGTGTC
9594084 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAATTTATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAATTTATGAGAGCTAGTGTAAGACCATGT
* * * * *
9594149 CTGGGATATGGA-ATCGGCCTCAATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG
66 CTGGGACAT-GACATCAGCCTCAATAT--GAGCCAGTGTAAGACCATGTCTGGAACATGACACCG
** * * * **
9594213 ACA-TTG-TTATATGTGTCAGTGTAATACCATGTTTGGGACATGGCAT
128 ACACCGGTTTATA-GAGCCAGTGTAAGACCATGCCTGGGACATGGCAT
9594259 CGGCACCGAT
Statistics
Matches: 153, Mismatches: 18, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
191 1 0.01
192 118 0.77
193 3 0.02
194 31 0.20
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (191 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCAATTTATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGACATCAGCCTCAATATGAGCCAGTGTAAGACCATGTCTGGAACATGACACCGACA
CCGGTTTATAGAGCCAGTGTAAGACCATGCCTGGGACATGGCATGAGCCTCGATATGTGTC
Found at i:9595972 original size:5 final size:5
Alignment explanation
Indices: 9595956--9596004 Score: 57
Period size: 5 Copynumber: 10.0 Consensus size: 5
9595946 TAGAAAGATA
* *
9595956 TTATT TTGTT TTATT TTATT TTATT ATT-TA TTA-T TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT -TTATT TTATT TTATT TTATT TTATT
9596005 AATTTAGGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
4 5 0.14
5 30 0.81
6 2 0.05
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (5 bp):
TTATT
Found at i:9598774 original size:6 final size:6
Alignment explanation
Indices: 9598763--9598788 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
9598753 ACTCCGTACC
9598763 TTACTG TTACTG TTACTG TTACTG TT
1 TTACTG TTACTG TTACTG TTACTG TT
9598789 TCAGATTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (6 bp):
TTACTG
Found at i:9599014 original size:18 final size:18
Alignment explanation
Indices: 9598993--9599031 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
9598983 ACTGCAAGAC
9598993 TGACTGTTACTGAACAAT
1 TGACTGTTACTGAACAAT
* *
9599011 TGACTGTTATTGAATAAT
1 TGACTGTTACTGAACAAT
9599029 TGA
1 TGA
9599032 TGGATACTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (18 bp):
TGACTGTTACTGAACAAT
Found at i:9602001 original size:33 final size:33
Alignment explanation
Indices: 9601959--9602025 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
9601949 TCTATCCCAA
9601959 ACTGAACCAAACCCTCGACACAATGCCAGTGCT
1 ACTGAACCAAACCCTCGACACAATGCCAGTGCT
9601992 ACTGAACCAAACCCTCGACACAATGCCAGTGCT
1 ACTGAACCAAACCCTCGACACAATGCCAGTGCT
9602025 A
1 A
9602026 TGGCATTAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.36, G:0.15, T:0.15
Consensus pattern (33 bp):
ACTGAACCAAACCCTCGACACAATGCCAGTGCT
Found at i:9607521 original size:27 final size:27
Alignment explanation
Indices: 9607475--9607647 Score: 184
Period size: 27 Copynumber: 6.4 Consensus size: 27
9607465 ATTATTGAAA
* * ****
9607475 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAAAATTACCGTTT
* *
9607502 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * * *
9607529 TGCCCTTGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
9607556 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
9607583 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
9607610 TACCCTCGATTTACAAAATTACCTTTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
9607637 TACCTTCGATT
1 TACCCTCGATT
9607648 GTGAAATTAC
Statistics
Matches: 126, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGTTT
Found at i:9607560 original size:54 final size:54
Alignment explanation
Indices: 9607475--9607647 Score: 211
Period size: 54 Copynumber: 3.2 Consensus size: 54
9607465 ATTATTGAAA
* * *** * *
9607475 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
9607529 TGCCCTTGATTTATAGAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* *
9607583 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACCTTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
*
9607637 TACCTTCGATT
1 TACCCTCGATT
9607648 GTGAAATTAC
Statistics
Matches: 99, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 99 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:9607709 original size:27 final size:27
Alignment explanation
Indices: 9607679--9607829 Score: 198
Period size: 27 Copynumber: 5.6 Consensus size: 27
9607669 TGTAGGATAG
*
9607679 AATTACCGAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
9607706 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
9607733 AATTACCAAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
9607760 AATTACCAAAATA-CCCTCAATTCGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
9607787 AATTACCAAAATACCCCTAATTTCAAA
1 AATTACCAAAATACCCCTAGTTTGTAA
9607814 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
9607830 TTGACTTTCT
Statistics
Matches: 111, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.05
27 102 0.92
28 4 0.04
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:9607718 original size:54 final size:54
Alignment explanation
Indices: 9607646--9607801 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 54
9607636 TTACCTTCGA
** * * * *
9607646 TTGTGAAATTACTGAAATACCTCT-GTAGGATAGAATTACCGAAATACCCCTAGT
1 TTGTGAAATTACCAAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* **
9607700 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGT
1 TTGTGAAATTACCAAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* **
9607754 TTGTGAAATTACCAAAATA-CCCTCAATTCGTAAAATTACCAAAATACC
1 TTGTGAAATTACCAAAATACCCCT-AGTAGGTAAAATTACCAAAATACC
9607802 CCTAATTTCA
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
53 4 0.05
54 81 0.92
55 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (54 bp):
TTGTGAAATTACCAAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:9607880 original size:27 final size:27
Alignment explanation
Indices: 9607812--9607892 Score: 85
Period size: 27 Copynumber: 2.9 Consensus size: 27
9607802 CCTAATTTCA
* *
9607812 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTATAGAAATACCCTTG-GTTTAC
*
9607839 TAAAAATTATAGAAATACCTTTGGTTTAC
1 --AAAATTATAGAAATACCCTTGGTTTAC
9607868 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCCTTGGTTT
9607893 GTAGATTTTC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
27 22 0.48
28 4 0.09
29 20 0.43
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCCTTGGTTTAC
Found at i:9607975 original size:27 final size:27
Alignment explanation
Indices: 9607945--9608005 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
9607935 TACCCTAACA
9607945 GGTAAAAAGACCGTAA-AGCCCCTGTAG
1 GGTAAAAAGACCGTAATA-CCCCTGTAG
** *
9607972 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAAAGACCGTAATACCCCTGTAG
9607999 GGTAAAA
1 GGTAAAA
9608006 TGTCGAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCCTGTAG
Found at i:9608851 original size:25 final size:24
Alignment explanation
Indices: 9608817--9608936 Score: 161
Period size: 25 Copynumber: 4.8 Consensus size: 24
9608807 AGGAAGTGCT
9608817 AAAAA-GGCTTTGTCCCAGTTTACC
1 AAAAAGGGCTTTG-CCCAGTTTACC
*
9608841 GAAAAGGGCTTTGCCCCAGTTTACC
1 AAAAAGGGCTTTG-CCCAGTTTACC
*
9608866 GAAAAGGGCTTTGCCCCAGTTTACC
1 AAAAAGGGCTTTG-CCCAGTTTACC
*
9608891 AAAAAGGGCTTTGCCCTAGTTTATC
1 AAAAAGGGCTTTGCCC-AGTTTACC
9608916 AAAAAGGGCTTTGCCCTAGTT
1 AAAAAGGGCTTTGCCC-AGTT
9608937 ATTAAAAGAG
Statistics
Matches: 90, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
24 7 0.08
25 83 0.92
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAAGGGCTTTGCCCAGTTTACC
Found at i:9608896 original size:50 final size:50
Alignment explanation
Indices: 9608817--9608936 Score: 179
Period size: 50 Copynumber: 2.4 Consensus size: 50
9608807 AGGAAGTGCT
* *
9608817 AAAAA-GGCTTTGTCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACC
1 AAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACC
* * *
9608866 GAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTTTGCCCTAGTTTATC
1 AAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACC
*
9608916 AAAAAGGGCTTTGCCCTAGTT
1 AAAAAGGGCTTTGCCCCAGTT
9608937 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 4 0.06
50 59 0.94
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (50 bp):
AAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACC
Found at i:9608960 original size:75 final size:74
Alignment explanation
Indices: 9608817--9608961 Score: 170
Period size: 75 Copynumber: 1.9 Consensus size: 74
9608807 AGGAAGTGCT
* **
9608817 AAAAAGGCTTTGTCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCC
1 AAAAAGGCTTTGTCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCC
9608882 CAGTTTACC
66 CAGTTTACC
* * **
9608891 AAAAAGGGCTTTG-CCCTAGTTTATCAAAAAGGGCTTTGCCCTAG-TTA-TTAAAAGAGGCTAGG
1 AAAAA-GGCTTTGTCCC-AGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGG
9608953 CCTCCAGTT
63 CC-CCAGTT
9608962 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
73 5 0.08
74 18 0.30
75 37 0.62
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (74 bp):
AAAAAGGCTTTGTCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCC
CAGTTTACC
Found at i:9609142 original size:42 final size:42
Alignment explanation
Indices: 9609083--9609174 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
9609073 TAGTCTCCCC
*
9609083 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
9609125 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
9609167 AAATGGGC
1 AAATGGGC
9609175 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:9609233 original size:31 final size:31
Alignment explanation
Indices: 9609198--9609276 Score: 158
Period size: 31 Copynumber: 2.5 Consensus size: 31
9609188 CGTTTACAGT
9609198 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
9609229 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
9609260 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
9609277 AACTGTTAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:9620682 original size:13 final size:13
Alignment explanation
Indices: 9620660--9620692 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9620650 AAGGATTTGT
9620660 TTAT-TAAACTAA
1 TTATCTAAACTAA
9620672 TTATCTAAACTAA
1 TTATCTAAACTAA
*
9620685 TTAACTAA
1 TTATCTAA
9620693 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:9620750 original size:25 final size:25
Alignment explanation
Indices: 9620705--9620752 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
9620695 TAATTAAACC
*
9620705 GAAGAGAAAATTTGGAAAAAGACTT
1 GAAGAGAAAAATTGGAAAAAGACTT
*
9620730 GAAGAGAAACAATT-GATAAAGAC
1 GAAGAGAAA-AATTGGAAAAAGAC
9620753 GACACTCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.54, C:0.06, G:0.23, T:0.17
Consensus pattern (25 bp):
GAAGAGAAAAATTGGAAAAAGACTT
Found at i:9622826 original size:31 final size:30
Alignment explanation
Indices: 9622789--9622962 Score: 158
Period size: 31 Copynumber: 5.8 Consensus size: 30
9622779 AGTGTACAAT
9622789 GTGAAAAGTGGTAGCTTCGGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTAAT-A
* *
9622820 GTGAAAAGTAGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCT-AATA
* ** *
9622851 GTGAAAAGTGGTAGCTCCAACTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTAAT-A
* * * * *
9622882 GTGAATAGTGATAGCTTCAGCTATCAAAT-
1 GTGAAAAGTGGTAGCTTCGGCTACCTAATA
* *
9622911 GTGAAAAG-GGATAGCTTCGGCTATCAAAT-
1 GTGAAAAGTGG-TAGCTTCGGCTACCTAATA
9622940 GTGAAAAG-GGATAGCTTCGGCTA
1 GTGAAAAGTGG-TAGCTTCGGCTA
9622963 TCAAATTTGG
Statistics
Matches: 122, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
28 1 0.01
29 47 0.39
30 1 0.01
31 71 0.58
32 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (30 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTAATA
Found at i:9622863 original size:62 final size:60
Alignment explanation
Indices: 9622786--9622968 Score: 185
Period size: 62 Copynumber: 3.0 Consensus size: 60
9622776 TTGAGTGTAC
*
9622786 AATGTGAAAAGTGGTAGCTTCGGCTACCTAATCAGTGAAAAGT-AGTAGCTTCGGCTACCTG
1 AATGTGAAAAGTGGTAGCTTCGGCTACCTAATCAGTGAAAAGTGA-TAGCTTCGGCTACC-A
* * ** * * * *
9622847 ATTAGTGAAAAGTGGTAGCTCCAACTACCTGATCAGTGAATAGTGATAGCTTCAGCTATCA
1 AAT-GTGAAAAGTGGTAGCTTCGGCTACCTAATCAGTGAAAAGTGATAGCTTCGGCTACCA
* * * *
9622908 AATGTGAAAAG-GGATAGCTTCGGCTATCAAAT--GTGAAAAGGGATAGCTTCGGCTATCA
1 AATGTGAAAAGTGG-TAGCTTCGGCTACCTAATCAGTGAAAAGTGATAGCTTCGGCTACCA
9622966 AAT
1 AAT
9622969 TTGGAAAGGA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
58 26 0.26
59 2 0.02
60 20 0.20
61 4 0.04
62 47 0.47
63 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (60 bp):
AATGTGAAAAGTGGTAGCTTCGGCTACCTAATCAGTGAAAAGTGATAGCTTCGGCTACCA
Found at i:9622923 original size:29 final size:29
Alignment explanation
Indices: 9622882--9622977 Score: 147
Period size: 29 Copynumber: 3.3 Consensus size: 29
9622872 TACCTGATCA
* * *
9622882 GTGAATAGTGATAGCTTCAGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
9622911 GTGAAAAGGGATAGCTTCGGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
9622940 GTGAAAAGGGATAGCTTCGGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
* *
9622969 TTGGAAAGG
1 GTGAAAAGG
9622978 AAAGGTATAC
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.26
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCGGCTATCAAAT
Found at i:9623004 original size:33 final size:33
Alignment explanation
Indices: 9622967--9623165 Score: 245
Period size: 33 Copynumber: 6.0 Consensus size: 33
9622957 CGGCTATCAA
* **
9622967 ATTTGGAAAGGAAAGGTATACTTTGTGTATATT
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* ** *
9623000 ATTTGAAAATGTTAGGTATACTTTGTGCATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
*
9623033 ATTTGAAAAGGAAATGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
**
9623066 ATTTGAAAAGGTTAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * *
9623099 ATATGAAAAGGGAAGGTATACTTTGTGTATATC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * * *
9623132 ATATAAAAAGGAAATGTATACTTTGTGTGTACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
9623165 A
1 A
9623166 CTCAGAAAGA
Statistics
Matches: 142, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 142 1.00
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.37
Consensus pattern (33 bp):
ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
Found at i:9623086 original size:99 final size:99
Alignment explanation
Indices: 9622980--9623165 Score: 273
Period size: 99 Copynumber: 1.9 Consensus size: 99
9622970 TGGAAAGGAA
** * * ** * *
9622980 AGGTATACTTTGTGTATATTATTTGAAAATGTTAGGTATACTTTGTGCATACCATTTGAAAAGGA
1 AGGTATACTTTGTGTATACCATATGAAAAGGGAAGGTATACTTTGTGCATACCATATAAAAAGGA
9623045 AATGTATACTTTGTGTATACCATTTGAAAAGGTT
66 AATGTATACTTTGTGTATACCATTTGAAAAGGTT
* *
9623079 AGGTATACTTTGTGTATACCATATGAAAAGGGAAGGTATACTTTGTGTATATCATATAAAAAGGA
1 AGGTATACTTTGTGTATACCATATGAAAAGGGAAGGTATACTTTGTGCATACCATATAAAAAGGA
*
9623144 AATGTATACTTTGTGTGTACCA
66 AATGTATACTTTGTGTATACCA
9623166 CTCAGAAAGA
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
99 76 1.00
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.38
Consensus pattern (99 bp):
AGGTATACTTTGTGTATACCATATGAAAAGGGAAGGTATACTTTGTGCATACCATATAAAAAGGA
AATGTATACTTTGTGTATACCATTTGAAAAGGTT
Found at i:9626163 original size:8 final size:8
Alignment explanation
Indices: 9626150--9626178 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
9626140 ATTTCAACAA
9626150 TAATGGGT
1 TAATGGGT
9626158 TAATGGGT
1 TAATGGGT
9626166 TAATGGGT
1 TAATGGGT
9626174 TAATG
1 TAATG
9626179 ATAAGGGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (8 bp):
TAATGGGT
Found at i:9627146 original size:6 final size:6
Alignment explanation
Indices: 9627137--9627174 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
9627127 AATAAAATTG
*
9627137 AAATCA AAATCA AAATCA AAATCA AAATTA AAAT-A AAA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAA
9627175 AAATAAAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.71, C:0.11, G:0.00, T:0.18
Consensus pattern (6 bp):
AAATCA
Found at i:9627175 original size:6 final size:6
Alignment explanation
Indices: 9627137--9627213 Score: 59
Period size: 6 Copynumber: 12.8 Consensus size: 6
9627127 AATAAAATTG
* * * * * *
9627137 AAATCA AAATCA AAATCA AAATCA AAATTA AAATAA AAAAATA AAAT-A
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATA-A AAATAA
*
9627185 AAATAA AAATAA GAATAA ATAA-AA AAATA
1 AAATAA AAATAA AAATAA A-AATAA AAATA
9627214 GGAGGATTCA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
5 7 0.11
6 48 0.79
7 6 0.10
ACGTcount: A:0.75, C:0.05, G:0.01, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:9627210 original size:18 final size:17
Alignment explanation
Indices: 9627167--9627213 Score: 69
Period size: 16 Copynumber: 2.8 Consensus size: 17
9627157 ATCAAAATTA
9627167 AAATAAAAAAATAAAAT
1 AAATAAAAAAATAAAAT
*
9627184 AAA-ATAAAAATAAGAAT
1 AAATAAAAAAATAA-AAT
9627201 AAATAAAAAAATA
1 AAATAAAAAAATA
9627214 GGAGGATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 9 0.35
17 9 0.35
18 8 0.31
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (17 bp):
AAATAAAAAAATAAAAT
Found at i:9627213 original size:24 final size:24
Alignment explanation
Indices: 9627148--9627208 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 24
9627138 AATCAAAATC
*
9627148 AAAATCAAAATCAAAATTAAAATAAA
1 AAAAT-AAAAT-AAAATAAAAATAAA
9627174 AAAATAAAATAAAATAAAAATAAGA
1 AAAATAAAATAAAATAAAAATAA-A
9627199 ATAAATAAAA
1 A-AAATAAAA
9627209 AAATAGGAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 12 0.38
25 7 0.22
26 13 0.41
ACGTcount: A:0.77, C:0.03, G:0.02, T:0.18
Consensus pattern (24 bp):
AAAATAAAATAAAATAAAAATAAA
Found at i:9642445 original size:13 final size:13
Alignment explanation
Indices: 9642423--9642455 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9642413 AAGGATTTGT
9642423 TTAT-TAAACTAA
1 TTATCTAAACTAA
9642435 TTATCTAAACTAA
1 TTATCTAAACTAA
*
9642448 TTAACTAA
1 TTATCTAA
9642456 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:9652222 original size:5 final size:5
Alignment explanation
Indices: 9652212--9652236 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
9652202 TAGGAAGATA
9652212 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
9652237 AATTTAGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:9660550 original size:13 final size:13
Alignment explanation
Indices: 9660528--9660560 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9660518 AAGGGTTTGT
9660528 TTAT-TAAACTAA
1 TTATCTAAACTAA
9660540 TTATCTAAACTAA
1 TTATCTAAACTAA
*
9660553 TTAACTAA
1 TTATCTAA
9660561 TTTTATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:9665093 original size:21 final size:20
Alignment explanation
Indices: 9665069--9665113 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
9665059 TCATTTCTCC
*
9665069 CACGCCCGTGTGTTATGGTA
1 CACGCCCGTGTATTATGGTA
* *
9665089 GCACGCCCTTGTATTATTGTA
1 -CACGCCCGTGTATTATGGTA
9665110 CACG
1 CACG
9665114 GCTGAATGGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.18, C:0.27, G:0.24, T:0.31
Consensus pattern (20 bp):
CACGCCCGTGTATTATGGTA
Found at i:9668536 original size:13 final size:13
Alignment explanation
Indices: 9668514--9668546 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9668504 AAGTATTTGT
9668514 TTAT-TAAACTAA
1 TTATCTAAACTAA
9668526 TTATCTAAACTAA
1 TTATCTAAACTAA
*
9668539 TTAACTAA
1 TTATCTAA
9668547 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:9694057 original size:28 final size:28
Alignment explanation
Indices: 9693992--9694142 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
9693982 GAGATTGGCG
* * * *
9693992 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
9694021 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
9694049 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
9694077 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
9694105 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
9694132 CTGAGTGTGCG
1 CTAAGTGTGCG
9694143 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:9701274 original size:49 final size:49
Alignment explanation
Indices: 9701197--9701440 Score: 301
Period size: 49 Copynumber: 4.9 Consensus size: 49
9701187 TAGCTGAAGC
* * *
9701197 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
9701246 TATCCGGTACACGTAGTAGCCTGCACTTAGTAC-ACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * * *
9701295 CATCTGATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * *
9701346 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
9701395 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
9701441 TCACAATAGC
Statistics
Matches: 163, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
48 10 0.06
49 102 0.63
50 15 0.09
51 36 0.22
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:9701374 original size:100 final size:98
Alignment explanation
Indices: 9701210--9701440 Score: 311
Period size: 100 Copynumber: 2.3 Consensus size: 98
9701200 CTGGTACGCA
* * * *
9701210 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
9701275 GTAC-ACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* * * *
9701308 TAGTAGCCTACACATAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** *
9701373 TAGTACTACACATGCGACCAATTATCTGGTACACG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
9701408 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
9701441 TCACAATAGC
Statistics
Matches: 114, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
98 27 0.24
99 4 0.04
100 73 0.64
101 10 0.09
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:9702121 original size:30 final size:30
Alignment explanation
Indices: 9702087--9702146 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
9702077 CTTTAATACG
9702087 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
9702117 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
9702147 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:9704967 original size:6 final size:6
Alignment explanation
Indices: 9704942--9705001 Score: 68
Period size: 6 Copynumber: 9.8 Consensus size: 6
9704932 TAACTCCTCC
* * *
9704942 TATTTT T-TATT TATTCT TATTTT TATTTTAT TTTTTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TA-TTT-T TATTTT TATTTT TATTTT
9704991 TATTTT TATTT
1 TATTTT TATTT
9705002 CATTTAAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
5 4 0.09
6 33 0.73
7 6 0.13
8 2 0.04
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.82
Consensus pattern (6 bp):
TATTTT
Found at i:9704972 original size:21 final size:21
Alignment explanation
Indices: 9704945--9704997 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
9704935 CTCCTCCTAT
9704945 TTTTTATTTATTCTTATTTTTA
1 TTTTTATTT-TTCTTATTTTTA
*
9704967 -TTTTATTTTTTTTATTTTTA
1 TTTTTATTTTTCTTATTTTTA
9704987 TTTTTATTTTT
1 TTTTTATTTTT
9704998 ATTTCATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 11 0.38
21 18 0.62
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTATTTTTCTTATTTTTA
Found at i:9704980 original size:26 final size:28
Alignment explanation
Indices: 9704945--9705001 Score: 91
Period size: 26 Copynumber: 2.1 Consensus size: 28
9704935 CTCCTCCTAT
9704945 TTTTTATTTATTCTTATTTTTA-TTTTA
1 TTTTTATTTATTCTTATTTTTATTTTTA
*
9704972 TTTTT-TTTATTTTTATTTTTATTTTTA
1 TTTTTATTTATTCTTATTTTTATTTTTA
9704999 TTT
1 TTT
9705002 CATTTAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 15 0.54
27 13 0.46
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (28 bp):
TTTTTATTTATTCTTATTTTTATTTTTA
Found at i:9705019 original size:37 final size:38
Alignment explanation
Indices: 9704942--9705026 Score: 95
Period size: 37 Copynumber: 2.3 Consensus size: 38
9704932 TAACTCCTCC
* * * * *
9704942 TATTTTT-TATTTATTCTTATTTTTATTTTATTTTTTT
1 TATTTTTATTTTTATTCTTATTTTCATTTAAATTTTGT
*
9704979 TATTTTTATTTTTATTTTTA-TTTCATTTAAATTTTGT
1 TATTTTTATTTTTATTCTTATTTTCATTTAAATTTTGT
9705016 TA-TTTTATTTT
1 TATTTTTATTTT
9705027 GAAATACATA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
36 9 0.22
37 22 0.54
38 10 0.24
ACGTcount: A:0.19, C:0.02, G:0.01, T:0.78
Consensus pattern (38 bp):
TATTTTTATTTTTATTCTTATTTTCATTTAAATTTTGT
Found at i:9705022 original size:36 final size:33
Alignment explanation
Indices: 9704942--9705026 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 33
9704932 TAACTCCTCC
* *
9704942 TATTTTTTA-TTTATTCTTATTTTTATTTTA-T
1 TATTTTTTATTTTATTTTTATTTTTATTTCATT
9704973 T-TTTTTTATTTTTATTTTTATTTTTATTTCATT
1 TATTTTTTA-TTTTATTTTTATTTTTATTTCATT
9705006 TAAATTTTGTTATTTTATTTT
1 T--ATTTT-TTATTTTATTTT
9705027 GAAATACATA
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
30 7 0.16
31 1 0.02
32 19 0.42
33 2 0.04
36 13 0.29
37 3 0.07
ACGTcount: A:0.19, C:0.02, G:0.01, T:0.78
Consensus pattern (33 bp):
TATTTTTTATTTTATTTTTATTTTTATTTCATT
Found at i:9718681 original size:48 final size:47
Alignment explanation
Indices: 9718599--9718924 Score: 247
Period size: 48 Copynumber: 6.9 Consensus size: 47
9718589 ATTTAGGTGA
* * * *
9718599 TATGTGTGCCAGTGTAAGACTATGTCTGGGACATGGTATCGGCCACAT
1 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CACAT
* *
9718647 T-TCGTGTGCTAGTGTAAGACCATGTTTGGAACATGGTATCGGCA-ATGT
1 TAT-GTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACA--T
* * * * *
9718695 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAT
1 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA--CAT
* * *
9718744 TATGTGT--TAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCACAT
1 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATC-GGCACAT
* * * *
9718790 TATGAGAGCTAGTGTAAGACCAGGTTTGGGACATGGCAT-TG--CAT
1 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACAT
** * *
9718834 TGATACAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-C-T
1 T-AT--GTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACAT
* * *
9718882 TGACATGTGAGCTAGTGTAAGAGCATGTCTGGGACATGGCATC
1 T---ATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATC
9718925 AGCAATTTAC
Statistics
Matches: 230, Mismatches: 31, Indels: 34
0.78 0.11 0.12
Matches are distributed among these distances:
44 4 0.02
45 2 0.01
46 8 0.03
47 63 0.27
48 142 0.62
49 8 0.03
50 2 0.01
51 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACAT
Found at i:9718894 original size:95 final size:94
Alignment explanation
Indices: 9718654--9718924 Score: 310
Period size: 95 Copynumber: 2.9 Consensus size: 94
9718644 CATTTCGTGT
* * * * * *
9718654 GCTAGTGTAAGACCATGTTTGGAACATGGTATCGGCAATGTTATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTGATATGAGAGCTAGTGTAAGACCATG
* * * *
9718719 TTTGGAACATGGCATCGGCATTGATTATGT
65 TTTGGGACATGGCATCGGCATTGATCAAGA
* * * ** *
9718749 GTTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCACATTATGAGAGCTAGTGTAAGACCAGG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGA-TATGAGAGCTAGTGTAAGACCATG
*
9718814 TTTGGGACATGGCAT-TGCATTGATACAAGA
65 TTTGGGACATGGCATCGGCATTGAT-CAAGA
* * *
9718844 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGACATGTGAGCTAGTGTAAGAGCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TGATATGAGAGCTAGTGTAAGACCATG
*
9718909 TCTGGGACATGGCATC
65 TTTGGGACATGGCATC
9718925 AGCAATTTAC
Statistics
Matches: 145, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
94 8 0.06
95 136 0.94
96 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (94 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGATATGAGAGCTAGTGTAAGACCATGT
TTGGGACATGGCATCGGCATTGATCAAGA
Found at i:9718898 original size:143 final size:144
Alignment explanation
Indices: 9718596--9718927 Score: 404
Period size: 143 Copynumber: 2.3 Consensus size: 144
9718586 GACATTTAGG
* * * * * *
9718596 TGAT-ATGTGTGCCAGTGTAAGACTATGTCTGGGACATGGTATCGGCCACATTTCGTGTGCTAGT
1 TGATCATGTG-GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTTCGAGAGCTAGT
* * * ** *
9718660 GTAAGACCATGTTTGGAACATGGTATCGGCAATGTTATGAGAGCCAGTGTAAGACCATGTTTGGA
65 GTAAGACCAGGTTTGGAACATGGCATCGGCAATGATACAAGAGCCAGTGTAAGACCATGTCTGGA
9718725 ACATGGCATCGGCAT
130 ACATGGCATCGGCAT
* * *
9718740 TGATTATGT-GTTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCACATTAT-GAGAGCTAGT
1 TGATCATGTGGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATT-TCGAGAGCTAGT
* * * * *
9718803 GTAAGACCAGGTTTGGGACATGGCAT-TGCATTGATACAAGAGCTAGTGTAAGACCATGTCTGGG
65 GTAAGACCAGGTTTGGAACATGGCATCGGCAATGATACAAGAGCCAGTGTAAGACCATGTCTGGA
*
9718867 ACATGGCATCGGCCT
130 ACATGGCATCGGCAT
*
9718882 TGA-CATGTGAGCTAGTGTAAGAGCATGTCTGGGACATGGCATCAGC
1 TGATCATGTG-GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
9718928 AATTTACCCT
Statistics
Matches: 160, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
141 4 0.03
142 47 0.29
143 100 0.62
144 5 0.03
145 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (144 bp):
TGATCATGTGGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTTCGAGAGCTAGTG
TAAGACCAGGTTTGGAACATGGCATCGGCAATGATACAAGAGCCAGTGTAAGACCATGTCTGGAA
CATGGCATCGGCAT
Found at i:9721078 original size:40 final size:40
Alignment explanation
Indices: 9721001--9721221 Score: 286
Period size: 40 Copynumber: 5.6 Consensus size: 40
9720991 AAACCAAGTA
* * * * * *
9721001 CCTTCGGAATTTAG-CCGGATATAGTTACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
9721040 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
9721080 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
9721120 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * * * *
9721160 TCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCACAAATT
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
9721199 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
9721222 CATCCGAATA
Statistics
Matches: 160, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 44 0.28
40 114 0.71
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:9723696 original size:12 final size:12
Alignment explanation
Indices: 9723679--9723705 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9723669 TTTTAAGTCC
9723679 TTTGTTTATTTA
1 TTTGTTTATTTA
9723691 TTTGTTTATTTA
1 TTTGTTTATTTA
9723703 TTT
1 TTT
9723706 TTATATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (12 bp):
TTTGTTTATTTA
Found at i:9723808 original size:20 final size:20
Alignment explanation
Indices: 9723785--9723823 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9723775 CTTTATGAAC
**
9723785 TATTTTTTAGGTTTTTTTAT
1 TATTTTTTACCTTTTTTTAT
9723805 TATTTTTTACCTTTTTTTA
1 TATTTTTTACCTTTTTTTA
9723824 AAATACTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.74
Consensus pattern (20 bp):
TATTTTTTACCTTTTTTTAT
Found at i:9725431 original size:47 final size:46
Alignment explanation
Indices: 9725358--9725528 Score: 190
Period size: 47 Copynumber: 3.7 Consensus size: 46
9725348 GTTATTGTGA
*
9725358 GCTAGTGTAAGACCATGTCTTGGACATGGCATCGGCATTGAGATGAGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGATGA-T
*
9725406 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGAT-AT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGATGAT
*
9725450 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGA-
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA--GATGAT
* * * *
9725497 GCCAGTGTAAGACAATTTCAGGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
9725529 TGGCATTATA
Statistics
Matches: 107, Mismatches: 8, Indels: 17
0.81 0.06 0.13
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 18 0.17
46 21 0.20
47 43 0.40
48 13 0.12
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATGAT
Found at i:9727687 original size:4 final size:4
Alignment explanation
Indices: 9727663--9727704 Score: 52
Period size: 4 Copynumber: 10.5 Consensus size: 4
9727653 CTAGCATAGC
9727663 ATTT -TTT ATTT -TTT CATTT ATTT ATTTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT -ATTT ATTT A-TTT ATTT ATTT ATTT AT
9727705 CTATCAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
3 6 0.18
4 21 0.62
5 7 0.21
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (4 bp):
ATTT
Found at i:9727696 original size:13 final size:13
Alignment explanation
Indices: 9727667--9727702 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
9727657 CATAGCATTT
9727667 TTTATTT-TTTCA
1 TTTATTTATTTCA
*
9727679 TTTATTTATTTTA
1 TTTATTTATTTCA
9727692 TTTATTTATTT
1 TTTATTTATTT
9727703 ATCTATCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTTATTTCA
Found at i:9731447 original size:24 final size:24
Alignment explanation
Indices: 9731420--9731508 Score: 88
Period size: 24 Copynumber: 3.7 Consensus size: 24
9731410 GCCGCGTTTC
*
9731420 CTCGCACACATAGTGCTATATAAT
1 CTCGCACACATAGTGCCATATAAT
* *
9731444 CTCGCACACATAGTGCCATGTAGTT
1 CTCGCACACATAGTGCCATATA-AT
* ** ** *
9731469 TTTTCACACATAGTGCCGCATAAC
1 CTCGCACACATAGTGCCATATAAT
9731493 CTCGCACACATAGTGC
1 CTCGCACACATAGTGC
9731509 TGAAATTTCT
Statistics
Matches: 50, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
24 33 0.66
25 17 0.34
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (24 bp):
CTCGCACACATAGTGCCATATAAT
Found at i:9743292 original size:44 final size:44
Alignment explanation
Indices: 9743242--9743329 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
9743232 TATGCATCTC
9743242 ATTCTTATCATTTACATAATAAATAAAATTTAAATCTAAAATTT
1 ATTCTTATCATTTACATAATAAATAAAATTTAAATCTAAAATTT
*
9743286 ATTCTTATCATTTACATAATAAATAAAATTTGAATCTAAAATTT
1 ATTCTTATCATTTACATAATAAATAAAATTTAAATCTAAAATTT
9743330 GAATCATAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (44 bp):
ATTCTTATCATTTACATAATAAATAAAATTTAAATCTAAAATTT
Found at i:9743327 original size:13 final size:13
Alignment explanation
Indices: 9743309--9743334 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9743299 ACATAATAAA
9743309 TAAAATTTGAATC
1 TAAAATTTGAATC
9743322 TAAAATTTGAATC
1 TAAAATTTGAATC
9743335 ATAACATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
TAAAATTTGAATC
Found at i:9743657 original size:26 final size:26
Alignment explanation
Indices: 9743621--9743671 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
9743611 TAACCTTTTC
9743621 AGATTTGTGCCGACTTAAACAAAATT
1 AGATTTGTGCCGACTTAAACAAAATT
9743647 AGATTTGTGCCGACTTAAACAAAAT
1 AGATTTGTGCCGACTTAAACAAAAT
9743672 CAAAGACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (26 bp):
AGATTTGTGCCGACTTAAACAAAATT
Found at i:9745414 original size:152 final size:153
Alignment explanation
Indices: 9745233--9745510 Score: 339
Period size: 154 Copynumber: 1.8 Consensus size: 153
9745223 GTCACTCTGA
* * * ** *
9745233 TTTCTATTCAGTCACTTAACTTTCGAAAAATAA-AAA-AAATTACTAACATTATTAAAAAGTGAC
1 TTTCAATTCAGTCACTCAACTTTCAAAAAATAACAAATAAACCACTAACATTATCAAAAAGTGAC
* * * * *
9745296 AAATCAGTCACCT-ATTAACATTTTCCATTATAGGCCTAATG-GGCTAGGTGACGTGGCCAGTTA
66 AAATCAATC-CCTCATTAACATTTCCCATTACAGGCCTAACGAGAC-AGGTGACGTGGCCAGTTA
9745359 ACTTGTCACGTTGGATGAGGCAAAG
129 ACTTGTCACGTTGGATGAGGCAAAG
* * * *
9745384 TTTCAATTCAGTTCACTCAACTTTCAAAAAATAACAAATTAGCCACTAACGTTATCGAAAAGTGA
1 TTTCAATTCAG-TCACTCAACTTTCAAAAAATAACAAATAAACCACTAACATTATCAAAAAGTGA
* * *
9745449 CAAATCAATCGCTCATTAACATTTCCCGTTACAGGCCTAACGAGACAGGTGACGTGGTCAGT
65 CAAATCAATCCCTCATTAACATTTCCCATTACAGGCCTAACGAGACAGGTGACGTGGCCAGT
9745511 AAATTAGCTT
Statistics
Matches: 104, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
151 10 0.10
152 20 0.19
153 5 0.05
154 67 0.64
155 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (153 bp):
TTTCAATTCAGTCACTCAACTTTCAAAAAATAACAAATAAACCACTAACATTATCAAAAAGTGAC
AAATCAATCCCTCATTAACATTTCCCATTACAGGCCTAACGAGACAGGTGACGTGGCCAGTTAAC
TTGTCACGTTGGATGAGGCAAAG
Found at i:9752686 original size:26 final size:26
Alignment explanation
Indices: 9752657--9752709 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
9752647 ATATATATAT
* *
9752657 TTTTTTTTTACTTATCATATAATAAC
1 TTTTTTTTAAATTATCATATAATAAC
9752683 TTTTTTTTAAATTATCATATAATAAC
1 TTTTTTTTAAATTATCATATAATAAC
9752709 T
1 T
9752710 ATAATCTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (26 bp):
TTTTTTTTAAATTATCATATAATAAC
Found at i:9755109 original size:4 final size:4
Alignment explanation
Indices: 9755100--9755151 Score: 104
Period size: 4 Copynumber: 13.0 Consensus size: 4
9755090 ATATTACAAA
9755100 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
9755148 TATG
1 TATG
9755152 AGTGTGTGTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:9758092 original size:15 final size:16
Alignment explanation
Indices: 9758067--9758100 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
9758057 ACGTGAATAA
9758067 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
9758083 TATT-TTTAAAATTAT
1 TATTATTTAAAATTAT
9758098 TAT
1 TAT
9758101 ATTAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:9758110 original size:15 final size:13
Alignment explanation
Indices: 9758067--9758110 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 13
9758057 ACGTGAATAA
9758067 TATTATTTAAAAT
1 TATTATTTAAAAT
9758080 TATTATTTTTAAAAT
1 TATTA--TTTAAAAT
9758095 TATTATATTAATAAT
1 TATTAT-TTAA-AAT
9758110 T
1 T
9758111 TATGAAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 6 0.22
14 4 0.15
15 17 0.63
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TATTATTTAAAAT
Found at i:9762846 original size:33 final size:33
Alignment explanation
Indices: 9762803--9762913 Score: 111
Period size: 33 Copynumber: 3.3 Consensus size: 33
9762793 TATCGACTTG
*
9762803 TTATAAGCATGTTTATTGCTCCGTATTGATCTA
1 TTATAAGCATGATTATTGCTCCGTATTGATCTA
* * *
9762836 TTATAGGCATGATAATTGCTAC-TATATCGA-CTTA
1 TTATAAGCATGATTATTGCTCCGTAT-T-GATC-TA
* *
9762870 TTATAAGCAT-ATTATTGCTACCGTATTGATTTG
1 TTATAAGCATGATTATTGCT-CCGTATTGATCTA
9762903 TTATAAGCATG
1 TTATAAGCATG
9762914 TCATATTGCA
Statistics
Matches: 62, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
32 3 0.05
33 41 0.66
34 15 0.24
35 3 0.05
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (33 bp):
TTATAAGCATGATTATTGCTCCGTATTGATCTA
Found at i:9762853 original size:67 final size:67
Alignment explanation
Indices: 9762763--9762913 Score: 205
Period size: 67 Copynumber: 2.2 Consensus size: 67
9762753 TATTATAATT
* * * * *
9762763 ATCTGTTATAATGCATGTTAATTGCTACTGTATCGACTTGTTATAAGCATGTTTATTGCT-CCGT
1 ATCTATTATAA-GCATGATAATTGCTACTATATCGACTTATTATAAGCAT-ATTATTGCTACCGT
9762827 ATTG
64 ATTG
*
9762831 ATCTATTATAGGCATGATAATTGCTACTATATCGACTTATTATAAGCATATTATTGCTACCGTAT
1 ATCTATTATAAGCATGATAATTGCTACTATATCGACTTATTATAAGCATATTATTGCTACCGTAT
9762896 TG
66 TG
* *
9762898 ATTTGTTATAAGCATG
1 ATCTATTATAAGCATG
9762914 TCATATTGCA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
66 8 0.11
67 56 0.77
68 9 0.12
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (67 bp):
ATCTATTATAAGCATGATAATTGCTACTATATCGACTTATTATAAGCATATTATTGCTACCGTAT
TG
Found at i:9766724 original size:70 final size:69
Alignment explanation
Indices: 9766643--9766816 Score: 190
Period size: 70 Copynumber: 2.5 Consensus size: 69
9766633 AAATACGTGT
* * * * * *
9766643 TAAGCAAGTTTATTGCTACTGTAATGATCTGTTATAAAACATGTTAATTGCTACTATATCAACCC
1 TAAGCATGTTTATTGCTACTGTATTGATCTATTATAAAACATGATAATTACTACTACATCAA-CC
*
9766708 TGTTA
65 TATTA
** * * * * *
9766713 TAAGCATGTTTATTGCTACCATATTGATCTATTAT-AAGCATGATAATTACTATTGCATCGACTT
1 TAAGCATGTTTATTGCTACTGTATTGATCTATTATAAAACATGATAATTACTACTACATCAACCT
9766777 ATTA
66 ATTA
*
9766781 TAAGCATG-TTATTGCTTCTGTATTGATCTATTATAA
1 TAAGCATGTTTATTGCTACTGTATTGATCTATTATAA
9766817 GCATGTCATG
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
67 23 0.27
68 14 0.16
69 19 0.22
70 30 0.35
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (69 bp):
TAAGCATGTTTATTGCTACTGTATTGATCTATTATAAAACATGATAATTACTACTACATCAACCT
ATTA
Found at i:9766753 original size:34 final size:34
Alignment explanation
Indices: 9766643--9766822 Score: 148
Period size: 35 Copynumber: 5.3 Consensus size: 34
9766633 AAATACGTGT
* * *
9766643 TAAGCAAGTTTATTGCTACTGTAATGATCTGTTA
1 TAAGCATGTTTATTGCTACTGTATTGATCTATTA
* * * ** * *
9766677 TAAAACATGTTAATTGCTACTATATCAACCCTGTTA
1 T-AAGCATGTTTATTGCTACTGTATTGA-TCTATTA
**
9766713 TAAGCATGTTTATTGCTACCATATTGATCTATTA
1 TAAGCATGTTTATTGCTACTGTATTGATCTATTA
* * * * * *
9766747 TAAGCATGATAATTACTATTGCATCGA-CTTATTA
1 TAAGCATGTTTATTGCTACTGTATTGATC-TATTA
*
9766781 TAAGCATG-TTATTGCTTCTGTATTGATCTATTA
1 TAAGCATGTTTATTGCTACTGTATTGATCTATTA
9766814 TAAGCATGT
1 TAAGCATGT
9766823 CATGTTGCAT
Statistics
Matches: 112, Mismatches: 29, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
33 26 0.23
34 39 0.35
35 40 0.36
36 7 0.06
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.41
Consensus pattern (34 bp):
TAAGCATGTTTATTGCTACTGTATTGATCTATTA
Found at i:9766822 original size:33 final size:34
Alignment explanation
Indices: 9766710--9766821 Score: 113
Period size: 34 Copynumber: 3.3 Consensus size: 34
9766700 ATCAACCCTG
* * **
9766710 TTATAAGCATGTTTATTGCTACCATATTGATCTA
1 TTATAAGCATGATTATTGCTTCTGTATTGATCTA
* * * *
9766744 TTATAAGCATGATAATTACTAT-TGCATCGA-CTTA
1 TTATAAGCATGATTATTGCT-TCTGTATTGATC-TA
9766778 TTATAAGCATG-TTATTGCTTCTGTATTGATCTA
1 TTATAAGCATGATTATTGCTTCTGTATTGATCTA
9766811 TTATAAGCATG
1 TTATAAGCATG
9766822 TCATGTTGCA
Statistics
Matches: 62, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
32 1 0.02
33 26 0.42
34 35 0.56
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (34 bp):
TTATAAGCATGATTATTGCTTCTGTATTGATCTA
Found at i:9770031 original size:15 final size:16
Alignment explanation
Indices: 9770011--9770046 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
9770001 AATTATTTAA
9770011 AAATTATAAAAAT-AT
1 AAATTATAAAAATAAT
9770026 AAATTATAAAAATAAT
1 AAATTATAAAAATAAT
9770042 AAATT
1 AAATT
9770047 GATATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATTATAAAAATAAT
Found at i:9780115 original size:28 final size:28
Alignment explanation
Indices: 9780073--9780188 Score: 117
Period size: 28 Copynumber: 4.2 Consensus size: 28
9780063 AATGCAGTTG
* *
9780073 CATACTCGATGTCTCGCACACTAAGTGC
1 CATACTCAATATCTCGCACACTAAGTGC
*
9780101 CATACTCAATATCTCGCACACTAAGTTC
1 CATACTCAATATCTCGCACACTAAGTGC
* * * *
9780129 CATTCTCAATGTTTCCCACACTAAGTG-
1 CATACTCAATATCTCGCACACTAAGTGC
* ** * *
9780156 CATTCTTGATATCTCGTAAACTAAGTGC
1 CATACTCAATATCTCGCACACTAAGTGC
9780184 CATAC
1 CATAC
9780189 ATAGCCGAAG
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
27 20 0.28
28 51 0.72
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.30
Consensus pattern (28 bp):
CATACTCAATATCTCGCACACTAAGTGC
Found at i:9780234 original size:40 final size:40
Alignment explanation
Indices: 9780175--9780276 Score: 134
Period size: 40 Copynumber: 2.5 Consensus size: 40
9780165 TATCTCGTAA
** *
9780175 ACTAAGTGCCATACATAGCCGAAGCTATCTCAAA-TCGCAC
1 ACTAAGTGCCATATTTAGCCGAAGCTATATCAAACT-GCAC
* **
9780215 ACTAAGTGCCAAATTTAGCCGAAGCTATATTGAACTGCAC
1 ACTAAGTGCCATATTTAGCCGAAGCTATATCAAACTGCAC
9780255 ACTAAGTGCCATATTTAGCCGA
1 ACTAAGTGCCATATTTAGCCGA
9780277 TATGTCGTCA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (40 bp):
ACTAAGTGCCATATTTAGCCGAAGCTATATCAAACTGCAC
Found at i:9782811 original size:48 final size:48
Alignment explanation
Indices: 9782740--9783029 Score: 445
Period size: 48 Copynumber: 6.0 Consensus size: 48
9782730 TACAAGATAA
* * *
9782740 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
*
9782788 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
9782836 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* * *
9782884 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATACGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* * * *
9782932 ATATATATATGTGGTAAATCCGAATGCCTAATGTGAAATATGTGTGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* * * *
9782980 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
9783028 AT
1 AT
9783030 GTGTGTATAT
Statistics
Matches: 221, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 221 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
Found at i:9783222 original size:37 final size:37
Alignment explanation
Indices: 9783172--9783316 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
9783162 AAATATATTT
9783172 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
9783209 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
9783246 TGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
9783283 CGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTAT
9783317 TCGAGCTAAA
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:9807103 original size:21 final size:20
Alignment explanation
Indices: 9807079--9807117 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
9807069 GAGTATTTTT
*
9807079 ATGTTTGATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
9807100 ATGTTTAATGATAGTTAT
1 ATGTTTAATGATAGTTAT
9807118 ATAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:9816017 original size:42 final size:43
Alignment explanation
Indices: 9815939--9816020 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
9815929 CCCCGGACGT
* * **
9815939 GGTCTTATATGTAATACAATATCGATGCCTCTGTCCCAGATAG
1 GGTCTTACATGAAATACAATATCGATGCCAATGTCCCAGATAG
9815982 GGTCTTACATGAAAT-CAAATAT-GATGCCAATGTCCCAGA
1 GGTCTTACATGAAATAC-AATATCGATGCCAATGTCCCAGA
9816021 CATGGTCTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 16 0.47
43 18 0.53
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGAAATACAATATCGATGCCAATGTCCCAGATAG
Found at i:9816028 original size:42 final size:43
Alignment explanation
Indices: 9815938--9816028 Score: 105
Period size: 42 Copynumber: 2.1 Consensus size: 43
9815928 GCCCCGGACG
* * ** *
9815938 TGGTCTTATATGTAATACAATATCGATGCCTCTGTCCCAGATA
1 TGGTCTTACATGAAATACAATATCGATGCCAATGTCCCAGACA
*
9815981 GGGTCTTACATGAAAT-CAAATAT-GATGCCAATGTCCCAGACA
1 TGGTCTTACATGAAATAC-AATATCGATGCCAATGTCCCAGACA
9816023 TGGTCT
1 TGGTCT
9816029 AACACATAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
42 22 0.55
43 18 0.45
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (43 bp):
TGGTCTTACATGAAATACAATATCGATGCCAATGTCCCAGACA
Found at i:9821262 original size:119 final size:120
Alignment explanation
Indices: 9821056--9821278 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
9821046 TCCTCGTTCA
*
9821056 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
* *
9821121 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * ** *
9821176 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGA
* * *
9821238 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
9821279 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:9821278 original size:40 final size:40
Alignment explanation
Indices: 9821054--9821278 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
9821044 GCTCCTCGTT
* *
9821054 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
9821094 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
9821134 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
9821174 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
9821213 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
9821254 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
9821279 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 117 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:9840566 original size:13 final size:13
Alignment explanation
Indices: 9840548--9840579 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
9840538 ATAGTTTAAT
9840548 AATAAAATAAAGA
1 AATAAAATAAAGA
9840561 AATAAAATAAAGA
1 AATAAAATAAAGA
9840574 AATAAA
1 AATAAA
9840580 TGAAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (13 bp):
AATAAAATAAAGA
Found at i:9841872 original size:15 final size:15
Alignment explanation
Indices: 9841852--9841883 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9841842 GAATTTATCA
9841852 AATTTATATTGATTG
1 AATTTATATTGATTG
*
9841867 AATTTATATTGGTTG
1 AATTTATATTGATTG
9841882 AA
1 AA
9841884 ATATATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (15 bp):
AATTTATATTGATTG
Found at i:9842442 original size:23 final size:23
Alignment explanation
Indices: 9842385--9842442 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
9842375 TAATATTCCG
*
9842385 GGTGTGTTTGGATTGGATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
9842408 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
9842431 GGTGTGTTTGGG
1 GGTGTGTTTGGG
9842443 AGGAATCCAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.09, C:0.03, G:0.41, T:0.47
Consensus pattern (23 bp):
GGTGTGTTTGGGTTGGATATTCT
Found at i:9842568 original size:18 final size:19
Alignment explanation
Indices: 9842547--9842587 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
9842537 AATGAAATGA
9842547 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
9842565 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
9842584 GAAA
1 GAAA
9842588 ACATGAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:9855796 original size:85 final size:86
Alignment explanation
Indices: 9855600--9855854 Score: 269
Period size: 85 Copynumber: 3.0 Consensus size: 86
9855590 GTTCATTTCT
* * * * * * ** *
9855600 AGTTACTGCCACTTGTTGTGGGTACACAACATATTTGCAAAATAAAAAAATTGTCACTTCATTCC
1 AGTTACTGCCACTTGTTGTGAGTGCACAATATATTTGCAGATTAAACAAATTGTCACTTGGTTCA
* * *
9855665 TAATTGAACCAAACTATTTAT
66 TGATTGAACCACACTATTTAC
* * * * * **
9855686 AGTTACTACCACCTATTGTGAGTGCACAATATATTAGCAGATTAAACAAACTACCACTTGGTTCA
1 AGTTACTGCCACTTGTTGTGAGTGCACAATATATTTGCAGATTAAACAAATTGTCACTTGGTTCA
9855751 TGATTGAACCACA-TATTTAC
66 TGATTGAACCACACTATTTAC
*** * * * *
9855771 AGTTACTGCCACTTGTTGTGAGTGCATTTTACATTTGCAGATTAAACAAATTGTTACTCGGTTCG
1 AGTTACTGCCACTTGTTGTGAGTGCACAATATATTTGCAGATTAAACAAATTGTCACTTGGTTCA
9855836 TGATTGAACCACACTATTT
66 TGATTGAACCACACTATTT
9855855 GTAGATTAAA
Statistics
Matches: 135, Mismatches: 33, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
85 70 0.52
86 65 0.48
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (86 bp):
AGTTACTGCCACTTGTTGTGAGTGCACAATATATTTGCAGATTAAACAAATTGTCACTTGGTTCA
TGATTGAACCACACTATTTAC
Found at i:9855989 original size:46 final size:46
Alignment explanation
Indices: 9855936--9856037 Score: 170
Period size: 46 Copynumber: 2.2 Consensus size: 46
9855926 TCAATTTAGT
*
9855936 TATGCTTATAACTATGCTTTTAACAGAATAATACAGTAGCATTAAA
1 TATGCTTATAACTATGCTTTTAACAGAACAATACAGTAGCATTAAA
* *
9855982 TATGCTTATAACTATGCTTTTAACAGAACAATACGGTAGCATTAAC
1 TATGCTTATAACTATGCTTTTAACAGAACAATACAGTAGCATTAAA
9856028 TATGC-TATAA
1 TATGCTTATAA
9856038 TAATTCAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 5 0.09
46 48 0.91
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (46 bp):
TATGCTTATAACTATGCTTTTAACAGAACAATACAGTAGCATTAAA
Found at i:9857531 original size:23 final size:23
Alignment explanation
Indices: 9857505--9857558 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
9857495 ATTTGCATCA
*
9857505 CATATCATATACCAA-AATCAAAC
1 CATATCATA-ACCAATAACCAAAC
*
9857528 CATAATCATAACCAATAACCAAGC
1 CAT-ATCATAACCAATAACCAAAC
9857552 CATATCA
1 CATATCA
9857559 CATGGCTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 12 0.44
24 15 0.56
ACGTcount: A:0.50, C:0.28, G:0.02, T:0.20
Consensus pattern (23 bp):
CATATCATAACCAATAACCAAAC
Found at i:9858191 original size:42 final size:42
Alignment explanation
Indices: 9858077--9858242 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 42
9858067 CGAAAAACTC
* * * *
9858077 ATACAATGCCAATGTCTCA-AACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGAA-GTGGTCTTACACGAAATCAA
*
9858119 ATATCGATGCCACTGTCCCAGATAG-GGTCTTACACGAAATCAA
1 ATA-CGATGCCAATGTCCCAGA-AGTGGTCTTACACGAAATCAA
* * *
9858162 ATACGATGCCAATGTCCCAGACGTCGTCTTCCACGTAAATCTTAA
1 ATACGATGCCAATGTCCCAGAAGTGGTCTTACACG-AAATC--AA
* **
9858207 GT-CGATGCCAACATCCCA-AAGTGGTCTTACACGAAA
1 ATACGATGCCAATGTCCCAGAAGTGGTCTTACACGAAA
9858243 ACACATATCG
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 32 0.31
43 49 0.48
44 16 0.16
45 4 0.04
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGAAGTGGTCTTACACGAAATCAA
Found at i:9862148 original size:43 final size:40
Alignment explanation
Indices: 9862087--9862209 Score: 104
Period size: 43 Copynumber: 2.9 Consensus size: 40
9862077 TGTGTTCTCA
*
9862087 TGTAAGACCACGATTGGGACGTTGGCATCAATATGTGATTACG
1 TGTAAGACCATG-TTGGGACGTTGGCATC-ATATGTGATT-CG
* * * *
9862130 TGTAAGACCATGTCTGGGACATCGACATCATATTTGATTCG
1 TGTAAGACCATGT-TGGGACGTTGGCATCATATGTGATTCG
* * *
9862171 TGTAAGGCCCTGTTTGGGATAG-TGGCATCGATATGTGAT
1 TGTAAGACCATG-TTGGGA-CGTTGGCATC-ATATGTGAT
9862210 AGCATGTGAG
Statistics
Matches: 64, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
41 22 0.34
42 19 0.30
43 23 0.36
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (40 bp):
TGTAAGACCATGTTGGGACGTTGGCATCATATGTGATTCG
Found at i:9867620 original size:16 final size:15
Alignment explanation
Indices: 9867576--9867620 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
9867566 AATCTAAGAT
*
9867576 AAATAAATAAAAATC
1 AAATAAAAAAAAATC
*
9867591 AAATAAACCAAAAATC
1 AAATAAA-AAAAAATC
9867607 AAATAAAAATAAAA
1 AAATAAAAA-AAAA
9867621 ATTTGTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 8 0.31
16 18 0.69
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.16
Consensus pattern (15 bp):
AAATAAAAAAAAATC
Found at i:9871303 original size:7 final size:6
Alignment explanation
Indices: 9871252--9871307 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
9871242 CTTTAGAACT
* * ***
9871252 AAAATA AAAATA AAAATG AAAATG AAAATA AAGCGA AAAATA AAAGAT-
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA-ATA
9871300 AAAATA AA
1 AAAATA AA
9871308 TGGGCTCAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
5 2 0.05
6 36 0.90
7 2 0.05
ACGTcount: A:0.75, C:0.02, G:0.09, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:9872933 original size:18 final size:18
Alignment explanation
Indices: 9872901--9872940 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
9872891 ATAAAAAAAT
*
9872901 AAATTGAATAAAATTAA-
1 AAATGGAATAAAATTAAG
9872918 AAATGGAATAAAAATTAAG
1 AAATGGAAT-AAAATTAAG
9872937 AAAT
1 AAAT
9872941 AAAGAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 8 0.40
19 4 0.20
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (18 bp):
AAATGGAATAAAATTAAG
Found at i:9880897 original size:25 final size:25
Alignment explanation
Indices: 9880855--9880903 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
9880845 CTTTATTATT
* *
9880855 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
9880880 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
9880904 GGTCCTCTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:9881308 original size:20 final size:20
Alignment explanation
Indices: 9881268--9881305 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
9881258 TAGGTGTGAG
*
9881268 ATTCCAATGTGTTCGATGGT
1 ATTCCAATGTGTTCAATGGT
9881288 ATTCCAA-GTGTTCAATGG
1 ATTCCAATGTGTTCAATGG
9881306 GTAAATTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.37
Consensus pattern (20 bp):
ATTCCAATGTGTTCAATGGT
Found at i:9881623 original size:49 final size:49
Alignment explanation
Indices: 9881551--9881649 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
9881541 TCATGTGTAA
9881551 GGCTTTTAGGCCAAACTGAATTGGGACACAATGTGCTTATTCTTTTAAT
1 GGCTTTTAGGCCAAACTGAATTGGGACACAATGTGCTTATTCTTTTAAT
9881600 GGCTTTTAGGCCAAACTGAATTGGGACACAATGTGCTTATTCTTTTAAT
1 GGCTTTTAGGCCAAACTGAATTGGGACACAATGTGCTTATTCTTTTAAT
9881649 G
1 G
9881650 TTGTGATTCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.36
Consensus pattern (49 bp):
GGCTTTTAGGCCAAACTGAATTGGGACACAATGTGCTTATTCTTTTAAT
Found at i:9881974 original size:13 final size:13
Alignment explanation
Indices: 9881956--9881981 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9881946 CATTAGAGTA
9881956 CTTTTAGGAAACC
1 CTTTTAGGAAACC
9881969 CTTTTAGGAAACC
1 CTTTTAGGAAACC
9881982 TTATCAAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
CTTTTAGGAAACC
Found at i:9892354 original size:771 final size:773
Alignment explanation
Indices: 9888237--9894462 Score: 11249
Period size: 773 Copynumber: 8.1 Consensus size: 773
9888227 ACCGTCAGCC
*
9888237 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTTGAGCTTTTGCTCAGTAGTGAAA
1 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTGCTCAGTAGTGAAA
*
9888302 TCCAAATAATCTATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
66 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
* * *
9888367 AGCTATGCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCGTTTCGTAATCGACCCTTGGTCTC
131 AGCTATGCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
*
9888432 CAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGAGACAGTGTGTCA
196 CAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
* *
9888497 TCCCTAGCTGGACGGTCTTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTTGCT
261 TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGCT
* *
9888562 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCGAATCCCTCTATGGCCTCTAG
326 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCAAATCCCTCTACGGCCTCTAG
* *
9888627 TACCCCGTCCACGAGCACTACTTGTGCTCATCGTAATTATCGAATTAATCTATATTTTGAAGTTT
391 TACCCCGTCCACGAGCACCACTTGTGCTCATCGTAATTATCGAATTAATCTATATTTAGAAGTTT
9888692 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
456 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
9888757 TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
521 TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
9888822 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
586 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
9888887 CGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
651 CGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
9888952 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
716 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
*
9889010 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTACTCAGTAGTGAAA
1 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTGCTCAGTAGTGAAA
9889075 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
66 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
9889140 AGCTATGCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
131 AGCTATGCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
* * * *
9889205 CAGATCCAACATTAGCCTCAGTGACCCTTTCCAGGAAATGCAGCATGGCCTGGGACAGTGTGTCA
196 CAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
* * *
9889270 TCCCTAGCTGGACGGTCTTGGGACTCAGCACCAGTGTCAGTAACAGGTGACATCGGCGTCTCGTT
261 TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGCT
*
9889335 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAACTCAAATCCCTCTACGGCCTCTAG
326 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCAAATCCCTCTACGGCCTCTAG
* * *
9889400 TACCTCGTCCACGAGTACCACTTGTGCTCATCGTAATTATTGAATTAATCTATATTTAGAAGTTT
391 TACCCCGTCCACGAGCACCACTTGTGCTCATCGTAATTATCGAATTAATCTATATTTAGAAGTTT
9889465 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
456 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
* *
9889530 TTTAGAGTCAACTATCGCGAGTAGCAAGCTAACTACGATTTTCAGTTTACACTACTTAAAGTGTT
521 TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
9889595 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
586 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
* *
9889660 CGGTACATATCAGAGTTTCAAAGAACTTACAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
651 CGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
9889725 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
716 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
* *
9889783 ACCACTGATACGCTTCATCGCGACACAATGAAACAGCCCCCTTGAGCTTTTGCTCAGTAGTGAAA
1 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTGCTCAGTAGTGAAA
* * *
9889848 TCCAAATAATCTATAATACACTCTGTGGACTCTATCTAGTACTCAGCTACATTAGGAGCAACTCC
66 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
** * *
9889913 AGCTATGCCCCTGAATACCGAAGCCCCATTGGACCAGAGTCGTTTCGTAATCGACCCTTGGCCTC
131 AGCTATGCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
*
9889978 TAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
196 CAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
* **
9890043 TCCCTAGCTGGATGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTTACT
261 TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGCT
* *
9890108 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCGAATCCCTCTATGGCCTCTAG
326 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCAAATCCCTCTACGGCCTCTAG
* * *
9890173 TACCCCGTCCACGAGCACTACTTGTGCTCATCATAATTATCGAATTAATCTATATTTTGAAGTTT
391 TACCCCGTCCACGAGCACCACTTGTGCTCATCGTAATTATCGAATTAATCTATATTTAGAAGTTT
9890238 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
456 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
9890303 TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
521 TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
9890368 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAA-TTCAGTATAAGCATGCTCTCAAA
586 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
9890432 CGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
651 CGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
9890497 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
716 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
9890555 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTGCTCAGTAGTGAAA
1 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTGCTCAGTAGTGAAA
*
9890620 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTTAGCTACATTAGGAGCAACTCC
66 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
*
9890685 AGCTATCCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
131 AGCTATGCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
* * *
9890750 CAGATCCAACATTAGCCTCAGTGACCCTCTCCAGGAAATGCAGCATGGCCTGGGACAGTGTGTCA
196 CAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
*
9890815 TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGTT
261 TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGCT
* *
9890880 AGTTTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAACTCAAATCCCTCTACGGCCTCTAG
326 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCAAATCCCTCTACGGCCTCTAG
* * * *
9890945 TACCTCATCCACGAGTACCACTTGTGCTCATCGTAATTATTGAATTAATCTATATTTAGAAGTTT
391 TACCCCGTCCACGAGCACCACTTGTGCTCATCGTAATTATCGAATTAATCTATATTTAGAAGTTT
9891010 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
456 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
9891075 TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
521 TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
9891140 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
586 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
*
9891205 CGGTACATATCAGAGTTTGAAAGAACTTACAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
651 CGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
9891270 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
716 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
*
9891328 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTTGAGCTTTTGCTCAGTAGTGAAA
1 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTGCTCAGTAGTGAAA
* *
9891393 TCCAAATAATCTATAATACACTCTGTGGCCTCTATCTAGTACTCAGCTACATTAGGAGCAACTCC
66 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
* *
9891458 AGCTATGCCCCTGAATA-C-CAGCCCCATTGGACCAGAGTCGTTTCGTAATCGACCCTTGGCCTC
131 AGCTATGCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
*
9891521 TAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
196 CAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
* **
9891586 TCCCTAGCTGGATGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTTACT
261 TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGCT
* *
9891651 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCGAATCCCTCTATGGCCTCTAG
326 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCAAATCCCTCTACGGCCTCTAG
* *
9891716 TACCCCGTCCACGAGCACTACTTGTGCTCATCATAATTATCGAATTAATCTATATTT-GAAGTTT
391 TACCCCGTCCACGAGCACCACTTGTGCTCATCGTAATTATCGAATTAATCTATATTTAGAAGTTT
9891780 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
456 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
9891845 TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTT-AGTTTACACTACTTAAAGTGTT
521 TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
9891909 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
586 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
9891974 CGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
651 CGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
9892039 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
716 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
* *
9892097 ACCAGTGATACGTTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTGCTCAGTAGTGAAA
1 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTGCTCAGTAGTGAAA
*
9892162 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTTAGCTACATTAGGAGCAACTCC
66 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
*
9892227 AGCTATCCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
131 AGCTATGCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
* * * *
9892292 CAGATCCAACATTAGCCTTAGTGACCCTCTCCAGGAAATGCAGCATGGCCTGGGACAGTGTGTCA
196 CAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
*
9892357 TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGTT
261 TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGCT
* *
9892422 AGTTTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAACTCAAATCCCTCTACGGCCTCTAG
326 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCAAATCCCTCTACGGCCTCTAG
* * * *
9892487 TACCTCATCCACGAGTACCACTTGTGCTCATCGTAATTATTGAATTAATCTATATTTAGAAGTTT
391 TACCCCGTCCACGAGCACCACTTGTGCTCATCGTAATTATCGAATTAATCTATATTTAGAAGTTT
*
9892552 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATATTATGCAAAACAATATCAGAGT
456 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
*
9892617 TTTAGAGTAAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
521 TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
*
9892682 TCATAACACATACACAATATTTCAGACAAATATAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
586 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
*
9892747 CGGTACATATCAGAGTTTGAAAGAACTTACAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
651 CGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
9892812 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
716 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
* * *
9892870 ACCACTGATACGCTTCATCGCGACACAACGAAGCAACCCCCTTGAGCTTTTGCTCAGTAGTGAAA
1 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTGCTCAGTAGTGAAA
* * *
9892935 TCCAAATAATCTATAATACACTATGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCT
66 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
* * *
9893000 AGCTATGCCCTTGAATACCTCAGCCCCATTGGACCAGAGTCGTTTCGTAATCGACCCTTGGCCTC
131 AGCTATGCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
*
9893065 TAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
196 CAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
* **
9893130 TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGTGTCTTACT
261 TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGCT
* *
9893195 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCGAATCCCTCTATGGCCTCTAG
326 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCAAATCCCTCTACGGCCTCTAG
*
9893260 TACCCCGTCCACGAGCACTACTTGTGCTCATCGTAATTATCGAATTAATCTATATTTAGAAGTTT
391 TACCCCGTCCACGAGCACCACTTGTGCTCATCGTAATTATCGAATTAATCTATATTTAGAAGTTT
9893325 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
456 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
*
9893390 TTTAGAGTAAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
521 TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
9893455 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
586 TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
*
9893520 CGGTACATATCAGAGTTTCAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
651 CGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
9893585 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
716 TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
*
9893643 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGATTTTGCTCAGTAGTGAAA
1 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTGCTCAGTAGTGAAA
9893708 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
66 TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
*
9893773 AGCTATGCCCCTGAATACCTTAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
131 AGCTATGCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
* * * *
9893838 CAGATCCAGTATTAGCCTCAGTGACCCTCTCTAGGATATGCAGCATGGCCTGGGACAGTGTTTCA
196 CAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
* *
9893903 TCCCTAGCTGGACGGTCCTGGGACTTAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGTT
261 TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGCT
* *
9893968 AGTGTCCAGATTAGAGATCGTAACAGATGCGAAGGACTCAGCTCAAATCCATCTACGGCCTCTAG
326 AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCAAATCCCTCTACGGCCTCTAG
* * * *
9894033 CACCCCGTCCACGAGTACCACTTGTGCTCATCGTAATTATTGAATTAATCTATATTTAGAAGATT
391 TACCCCGTCCACGAGCACCACTTGTGCTCATCGTAATTATCGAATTAATCTATATTTAGAAGTTT
9894098 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
456 TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
* *
9894163 TTTAGA-TCCAGCTATTGCGAGTAGCAAGCTAACTACGGTTTTAAGTTTACACTACTTAAAGTGT
521 TTTAGAGT-CAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGT
*
9894227 TTCATAACACATACACAATATTTCAGACAAATACAAAAAAAAATTCAGTATAAGCATGCTCTCAA
585 TTCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAA
*
9894292 ACGGTACATATCAGAGTTTCAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATAC
650 ACGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATAC
*
9894357 TTACTATAAAAATAATTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
715 TTACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
9894416 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGC
1 ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGC
9894463 CTAGTACTCA
Statistics
Matches: 5227, Mismatches: 220, Indels: 12
0.96 0.04 0.00
Matches are distributed among these distances:
769 349 0.07
770 115 0.02
771 553 0.11
772 854 0.16
773 3356 0.64
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (773 bp):
ACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGCTTTTGCTCAGTAGTGAAA
TCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTACTCAGCTACATTAGGAGCAACTCC
AGCTATGCCCCTGAATACCTCAGCCCCATTGGACCAGAGTCATTTCGTAATCGACCCATGGCCTC
CAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGGATATGCAGCATGGCCTGGGACAGTGTGTCA
TCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTAACAGGTGACATCGGCGTCTCGCT
AGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGCTCAAATCCCTCTACGGCCTCTAG
TACCCCGTCCACGAGCACCACTTGTGCTCATCGTAATTATCGAATTAATCTATATTTAGAAGTTT
TATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGT
TTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTTCAGTTTACACTACTTAAAGTGTT
TCATAACACATACACAATATTTCAGACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAA
CGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACT
TACTATAAAAATATTTTAAATCGTTTCACAAATCATTTTCTTTAAACCTGGCTCTGAT
Done.