Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 282 of 343
Found at i:93517938 original size:73 final size:74
Alignment explanation
Indices: 93517849--93517989 Score: 221
Period size: 73 Copynumber: 1.9 Consensus size: 74
93517839 TTAATTTCTG
* *
93517849 TTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCGAGACACAT-TGAGGTATTTT
1 TTTTTCAAAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGAGACACATATGAGGTATTTT
93517913 CAGTTTTTA
66 CAGTTTTTA
* * *
93517922 TTTTTCGAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGAGTCACATGATGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGAGACACAT-ATGAGGTATTT
93517987 TCA
65 TCA
93517990 AAATCTACTT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 48 0.79
75 13 0.21
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.35
Consensus pattern (74 bp):
TTTTTCAAAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGAGACACATATGAGGTATTTT
CAGTTTTTA
Found at i:93518035 original size:78 final size:73
Alignment explanation
Indices: 93517850--93518039 Score: 193
Period size: 73 Copynumber: 2.5 Consensus size: 73
93517840 TAATTTCTGT
* * *
93517850 TTTTCAAAAATCAACTCATATTGC-AAGAGGTGAGTTGAGTCTCGAGACACATTGAGGTATTTTC
1 TTTTAAAAAACCAACTCATATTGCGAA-AGGTGAGTTGAGCCTCGAGACACATTGAGGTATTTTC
*** * *
93517914 AGTTTTTAT
65 AAAATCTAC
** * * * *
93517923 TTTTCGAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGAGTCACATGATGAGGTATTTT
1 TTTTAAAAAACCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGAGACACAT--TGAGGTATTTT
93517988 CAAAATCTAC
64 CAAAATCTAC
93517998 TTTTAAATTAAGACCAACTCATATTGCGAAAGGTGAGTTGAG
1 TTTTAAA--AA-ACCAACTCATATTGCGAAAGGTGAGTTGAG
93518040 TCTTGGCGCA
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
73 45 0.47
74 1 0.01
75 21 0.22
77 2 0.02
78 27 0.28
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (73 bp):
TTTTAAAAAACCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGAGACACATTGAGGTATTTTCA
AAATCTAC
Found at i:93519644 original size:30 final size:30
Alignment explanation
Indices: 93519566--93519627 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
93519556 ATTTTAACAT
*
93519566 TACTAGTTATATATATATCTTTTACTATTC
1 TACTAGTTATATATATATTTTTTACTATTC
93519596 TACTAGTTATATATATATTTTTTACTATTC
1 TACTAGTTATATATATATTTTTTACTATTC
93519626 TA
1 TA
93519628 TGTATATCTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.11, G:0.03, T:0.55
Consensus pattern (30 bp):
TACTAGTTATATATATATTTTTTACTATTC
Found at i:93519653 original size:21 final size:20
Alignment explanation
Indices: 93519621--93519666 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
93519611 TATTTTTTAC
* *
93519621 TATTCTATGTATATCTCTAA
1 TATTATATGTATATCTCCAA
*
93519641 TATTATATAGTATATTTCCAA
1 TATTATAT-GTATATCTCCAA
93519662 TATTA
1 TATTA
93519667 GTACTAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.35, C:0.11, G:0.04, T:0.50
Consensus pattern (20 bp):
TATTATATGTATATCTCCAA
Found at i:93522282 original size:22 final size:22
Alignment explanation
Indices: 93522257--93522299 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
93522247 TATCCAAATA
93522257 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
93522279 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
93522300 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:93522436 original size:51 final size:51
Alignment explanation
Indices: 93522360--93522460 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 51
93522350 TTTTTTGTCC
*
93522360 TTAGTGAATTCAGACCGGGCTGGCCCAGGCCCCGACCAAAAATGCCTTCCT
1 TTAGTGAATTCAGACCGGGCCGGCCCAGGCCCCGACCAAAAATGCCTTCCT
*
93522411 TTAGTGAATTCAGACCGGGCCGGCCCAGGCTCCGACCAAAAATGCCTTCC
1 TTAGTGAATTCAGACCGGGCCGGCCCAGGCCCCGACCAAAAATGCCTTCC
93522461 CCGAAGCCTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.24, C:0.34, G:0.24, T:0.19
Consensus pattern (51 bp):
TTAGTGAATTCAGACCGGGCCGGCCCAGGCCCCGACCAAAAATGCCTTCCT
Found at i:93528916 original size:25 final size:25
Alignment explanation
Indices: 93528888--93528959 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
93528878 ATGCTATCAT
*
93528888 GAGCTATGAATCAGGAAGCTCAAAC
1 GAGCTATAAATCAGGAAGCTCAAAC
* *
93528913 GAGCTACAAATCAGGAAGCTCATAC
1 GAGCTATAAATCAGGAAGCTCAAAC
*
93528938 GAGCCATAAATC-GAGAAGCTCA
1 GAGCTATAAATCAG-GAAGCTCA
93528960 TACAAGTTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.15
Consensus pattern (25 bp):
GAGCTATAAATCAGGAAGCTCAAAC
Found at i:93528972 original size:25 final size:25
Alignment explanation
Indices: 93528944--93528994 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
93528934 ATACGAGCCA
93528944 TAAATCGAGAAGCTCATACAAGTTG
1 TAAATCGAGAAGCTCATACAAGTTG
* *
93528969 TAAATTGGGAAGCTCATACAAGTTG
1 TAAATCGAGAAGCTCATACAAGTTG
93528994 T
1 T
93528995 GGTGTGTCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (25 bp):
TAAATCGAGAAGCTCATACAAGTTG
Found at i:93535086 original size:21 final size:21
Alignment explanation
Indices: 93535062--93535101 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
93535052 AATATTAATC
93535062 TTCTTGACCTTGTAAGACCTT
1 TTCTTGACCTTGTAAGACCTT
93535083 TTCTTGACCTTGTAAGACC
1 TTCTTGACCTTGTAAGACC
93535102 CAGTCCAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (21 bp):
TTCTTGACCTTGTAAGACCTT
Found at i:93538869 original size:29 final size:29
Alignment explanation
Indices: 93538827--93538884 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
93538817 CTTTAAGTTG
93538827 ATTGATAAAAGTTTAGAGTTTGATCTTTA
1 ATTGATAAAAGTTTAGAGTTTGATCTTTA
93538856 ATTGATAAAAGTTTAGAGTTTGATCTTTA
1 ATTGATAAAAGTTTAGAGTTTGATCTTTA
93538885 TTTGTCAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.45
Consensus pattern (29 bp):
ATTGATAAAAGTTTAGAGTTTGATCTTTA
Found at i:93552989 original size:28 final size:28
Alignment explanation
Indices: 93552949--93553011 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
93552939 GTCATTATCA
93552949 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
93552977 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
93553005 ACCCCAT
1 ACCCCAT
93553012 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:93558275 original size:28 final size:28
Alignment explanation
Indices: 93558223--93558282 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
93558213 ATTATCAACT
93558223 CCATAAGTTATAAAACTCTTCCTATACC
1 CCATAAGTTATAAAACTCTTCCTATACC
* * * *
93558251 CCATAAGTTATGAGACTTTTTCTATACC
1 CCATAAGTTATAAAACTCTTCCTATACC
93558279 CCAT
1 CCAT
93558283 TAATATGGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.35
Consensus pattern (28 bp):
CCATAAGTTATAAAACTCTTCCTATACC
Found at i:93558620 original size:23 final size:23
Alignment explanation
Indices: 93558590--93558660 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 23
93558580 TCGTTGATTC
*
93558590 AATTAATTTAATAAATTTATTTA
1 AATTAATTAAATAAATTTATTTA
* *
93558613 ATTTAATTAAATAAA-TAATTTA
1 AATTAATTAAATAAATTTATTTA
* *
93558635 AATTAATAAAAATAAATATATTTA
1 AATTAAT-TAAATAAATTTATTTA
93558659 AA
1 AA
93558661 AAATCTAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
22 12 0.31
23 20 0.51
24 7 0.18
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
AATTAATTAAATAAATTTATTTA
Found at i:93558633 original size:17 final size:17
Alignment explanation
Indices: 93558611--93558644 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
93558601 TAAATTTATT
93558611 TAATTT-AATTAAATAAA
1 TAATTTAAATT-AATAAA
93558628 TAATTTAAATTAATAAA
1 TAATTTAAATTAATAAA
93558645 AATAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATTTAAATTAATAAA
Found at i:93558640 original size:27 final size:24
Alignment explanation
Indices: 93558599--93558660 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 24
93558589 CAATTAATTT
* * *
93558599 AATAAATTTATTTAATTTAAT-TA
1 AATAAATATATTTAAATTAATAAA
93558622 AATAAATA-ATTTAAATTAATAAA
1 AATAAATATATTTAAATTAATAAA
93558645 AATAAATATATTTAAA
1 AATAAATATATTTAAA
93558661 AAATCTAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 11 0.32
23 16 0.47
24 7 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
AATAAATATATTTAAATTAATAAA
Found at i:93559829 original size:27 final size:27
Alignment explanation
Indices: 93559776--93559831 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
93559766 TTATCTTTTT
* * *
93559776 AATTTCTTTTATTTTTTTCTTTTATAA
1 AATTACTTTTATTTTTTTCTCTAATAA
93559803 AATTACTTTTAGTTTTTTTC-CTAATAA
1 AATTACTTTTA-TTTTTTTCTCTAATAA
93559830 AA
1 AA
93559832 AGAAAAACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.61
Consensus pattern (27 bp):
AATTACTTTTATTTTTTTCTCTAATAA
Found at i:93559832 original size:28 final size:27
Alignment explanation
Indices: 93559776--93559832 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 27
93559766 TTATCTTTTT
* **
93559776 AATTTCTTTTATTTTTTTCTTTTATAA
1 AATTACTTTTATTTTTTTCTAATATAA
93559803 AATTACTTTTAGTTTTTTTCCTAATA-AA
1 AATTACTTTTA-TTTTTTT-CTAATATAA
93559831 AA
1 AA
93559833 GAAAAACTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 10 0.40
28 11 0.44
29 4 0.16
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.60
Consensus pattern (27 bp):
AATTACTTTTATTTTTTTCTAATATAA
Found at i:93567306 original size:15 final size:15
Alignment explanation
Indices: 93567281--93567319 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
93567271 TAAATTATTT
*
93567281 TTTACTTAAAAATATA
1 TTTA-TTAAAAATAAA
*
93567297 TTTATTAAAATTAAA
1 TTTATTAAAAATAAA
93567312 TTTATTAA
1 TTTATTAA
93567320 TAAAGGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (15 bp):
TTTATTAAAAATAAA
Found at i:93588372 original size:51 final size:51
Alignment explanation
Indices: 93588296--93588573 Score: 240
Period size: 51 Copynumber: 5.7 Consensus size: 51
93588286 TGAAGATGCG
* * * *
93588296 AATCTTTTTTCCCTAAAGTTATAGTGGAATAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * *
93588347 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAG--A-TAG---CG
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* *
93588392 AATCTTATTTCCCTAAAGTTGTAGTGGGACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * * * * *
93588443 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAG--A-TAG---CG
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
* * * *
93588488 AATCTTATTTTCCTAAAGTTATAGTAGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
*
93588539 AATCTTATCTTCCTAAAGTTGTAGT-GAAGCAGATT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAA-CAGATT
93588574 GAAGATGCGA
Statistics
Matches: 174, Mismatches: 40, Indels: 26
0.73 0.17 0.11
Matches are distributed among these distances:
45 65 0.37
47 2 0.01
48 8 0.05
49 2 0.01
50 3 0.02
51 94 0.54
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (51 bp):
AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACA
Found at i:93588427 original size:96 final size:95
Alignment explanation
Indices: 93588249--93588640 Score: 532
Period size: 96 Copynumber: 4.1 Consensus size: 95
93588239 GATTAAAACC
* * *
93588249 ACAAATTTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATGCGAATCTTTTTTCCCTAAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGATGCGAATCTTATTTCCCTAAAG
*
93588314 TTATAGTGGAATAGATTAAAGCTACAAGTT
66 TTATAGTGGAACAGATTAAAGCTACAAGTT
* *
93588344 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGAT-GCGAATCTTATTTCCCTAAA
* *
93588409 GTTGTAGTGGGACAGATTAAAGCTACAAGTT
65 GTTATAGTGGAACAGATTAAAGCTACAAGTT
* * * *
93588440 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATTTTCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGAT-GCGAATCTTATTTCCCTAAA
*
93588505 GTTATAGTAGAACAGATTAAAGCTACAAGTT
65 GTTATAGTGGAACAGATTAAAGCTACAAGTT
* * * * * * *
93588536 ACAAATCTTATCTTCCTAAAGTTGTAGTGAAGCAGATTGAAGATGCGAATATTATTTGCTTGAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGATGCGAATCTTATTTCCCTAAAG
** * * *
93588601 TTGGAGTGGAATAGACTAAAGCTACAAGCT
66 TTATAGTGGAACAGATTAAAGCTACAAGTT
*
93588631 ATAAATCTTA
1 ACAAATCTTA
93588641 CCTCTCTAAA
Statistics
Matches: 264, Mismatches: 32, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
95 90 0.34
96 174 0.66
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.32
Consensus pattern (95 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGATGCGAATCTTATTTCCCTAAAG
TTATAGTGGAACAGATTAAAGCTACAAGTT
Found at i:93588524 original size:192 final size:190
Alignment explanation
Indices: 93588249--93588640 Score: 570
Period size: 191 Copynumber: 2.1 Consensus size: 190
93588239 GATTAAAACC
* * *
93588249 ACAAATTTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATGCGAATCTTTTTTCCCTAAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGATGCGAATCTTTTTTCCCTAAAG
* * * *
93588314 TTATAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAG
66 TTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTGTAGTGAAGCAG
* * * * *
93588379 ATTGAAGATAGCGAATCTTATTTCCCTAAAGTTGTAGTGGGACAGATTAAAGCTACAAGTT
131 ATTGAAGAT-GCGAATATTATTTCCCTAAAGTTGGAGTGGAACAGACTAAAGCTACAAGCT
* *
93588440 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATTTT-CCTAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGAT-GCGAATCTT-TTTTCCCTAA
*
93588504 AGTTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTTCCTAAAGTTGTAGTGAAGC
64 AGTTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTGTAGTGAAGC
* * * *
93588569 AGATTGAAGATGCGAATATTATTTGCTTGAAGTTGGAGTGGAATAGACTAAAGCTACAAGCT
129 AGATTGAAGATGCGAATATTATTTCCCTAAAGTTGGAGTGGAACAGACTAAAGCTACAAGCT
*
93588631 ATAAATCTTA
1 ACAAATCTTA
93588641 CCTCTCTAAA
Statistics
Matches: 179, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
191 90 0.50
192 85 0.47
193 4 0.02
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.32
Consensus pattern (190 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGATGCGAATCTTTTTTCCCTAAAG
TTATAGTAGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTGTAGTGAAGCAG
ATTGAAGATGCGAATATTATTTCCCTAAAGTTGGAGTGGAACAGACTAAAGCTACAAGCT
Found at i:93588920 original size:18 final size:19
Alignment explanation
Indices: 93588886--93588923 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
93588876 ATCAGCCCAA
93588886 ATAAAAAAAATAGATAAAC
1 ATAAAAAAAATAGATAAAC
93588905 ATAAAAATAAA-A-ATAAAC
1 ATAAAAA-AAATAGATAAAC
93588923 A
1 A
93588924 AAACCTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 8 0.44
20 3 0.17
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.16
Consensus pattern (19 bp):
ATAAAAAAAATAGATAAAC
Found at i:93597336 original size:16 final size:14
Alignment explanation
Indices: 93597311--93597348 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
93597301 TTATAAAACC
93597311 TTAT-TTATAAATGT
1 TTATATTATAAAT-T
93597325 TATATATTATAAATT
1 T-TATATTATAAATT
93597340 TTATATTAT
1 TTATATTAT
93597349 TTTTTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.41
15 5 0.23
16 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (14 bp):
TTATATTATAAATT
Found at i:93601664 original size:21 final size:21
Alignment explanation
Indices: 93601640--93601685 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
93601630 AGACAAGTTC
93601640 TTTTA-ATTAAATTAAATTAAA
1 TTTTATATT-AATTAAATTAAA
*
93601661 TTTTATATTAATTGAATTAAA
1 TTTTATATTAATTAAATTAAA
93601682 TTTT
1 TTTT
93601686 TGAGTGGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
TTTTATATTAATTAAATTAAA
Found at i:93608300 original size:29 final size:29
Alignment explanation
Indices: 93608242--93608313 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
93608232 TATTAAAATC
*
93608242 AATATGATTTATAT-TCCGAATAAAAACA
1 AATATGTTTTATATATCCGAATAAAAACA
*
93608270 AATATGTTTTATATATGCGAATAAAAACA
1 AATATGTTTTATATATCCGAATAAAAACA
93608299 AATATGTTTTATATA
1 AATATGTTTTATATA
93608314 CGCATATATA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 13 0.32
29 28 0.68
ACGTcount: A:0.47, C:0.07, G:0.08, T:0.38
Consensus pattern (29 bp):
AATATGTTTTATATATCCGAATAAAAACA
Found at i:93613033 original size:2 final size:2
Alignment explanation
Indices: 93612986--93613015 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
93612976 CATCACGTGT
93612986 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
93613016 AGCTTATCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:93624060 original size:15 final size:17
Alignment explanation
Indices: 93624040--93624073 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
93624030 ACAAAAAGAC
93624040 AAAA-GGAAAA-GAAAA
1 AAAAGGGAAAATGAAAA
93624055 AAAAGGGAAAATGAAAA
1 AAAAGGGAAAATGAAAA
93624072 AA
1 AA
93624074 TGACCATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 6 0.35
17 7 0.41
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (17 bp):
AAAAGGGAAAATGAAAA
Found at i:93626167 original size:11 final size:11
Alignment explanation
Indices: 93626151--93626196 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
93626141 AAGGAAAGGA
*
93626151 AAAGAAGGAAG
1 AAAGAAAGAAG
93626162 AAAGAAAGAAG
1 AAAGAAAGAAG
93626173 AAA-AAA-AAG
1 AAAGAAAGAAG
* *
93626182 AAAAAAAAAAG
1 AAAGAAAGAAG
93626193 AAAG
1 AAAG
93626197 GAAAAAATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 6 0.19
10 6 0.19
11 19 0.61
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (11 bp):
AAAGAAAGAAG
Found at i:93640397 original size:16 final size:15
Alignment explanation
Indices: 93640376--93640423 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
93640366 GATGTGAATA
93640376 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
93640392 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
93640407 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
93640423 A
1 A
93640424 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:93640399 original size:24 final size:24
Alignment explanation
Indices: 93640372--93640427 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
93640362 TAATGATGTG
*
93640372 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
93640396 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
93640420 AATAATAA
1 AATAATAA
93640428 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:93640406 original size:8 final size:8
Alignment explanation
Indices: 93640372--93640423 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
93640362 TAATGATGTG
*
93640372 AATAATAA
1 AATATTAA
93640380 AATATATAA
1 AATAT-TAA
93640389 AATA-TAA
1 AATATTAA
93640396 AATATTAA
1 AATATTAA
*
93640404 AATATCAA
1 AATATTAA
*
93640412 AATATTAG
1 AATATTAA
93640420 AATA
1 AATA
93640424 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:93640589 original size:19 final size:19
Alignment explanation
Indices: 93640539--93640592 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
93640529 ATACTACATC
*
93640539 AATATGTACATATATAAAAA
1 AATATGTACATA-ATATAAA
* * *
93640559 AATACGT-GATAATATTAA
1 AATATGTACATAATATAAA
93640577 AATATGTACATAATAT
1 AATATGTACATAATAT
93640593 GTGTTAAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 11 0.41
19 10 0.37
20 6 0.22
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.33
Consensus pattern (19 bp):
AATATGTACATAATATAAA
Found at i:93640681 original size:25 final size:25
Alignment explanation
Indices: 93640653--93640786 Score: 77
Period size: 25 Copynumber: 5.6 Consensus size: 25
93640643 TGTAAAAAAT
93640653 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * * *
93640678 ATATATACATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* *
93640703 ATATATATACGTAATATAGA-ATTTAA-
1 ATATATA-A-ATAATATA-ATATTAAAG
** *
93640729 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
93640751 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
93640774 AAATAT-AATAATA
1 ATATATAAATAATA
93640787 ACAAAAAAGG
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
21 4 0.05
22 12 0.15
23 18 0.22
24 5 0.06
25 32 0.39
26 1 0.01
27 10 0.12
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:93640708 original size:27 final size:26
Alignment explanation
Indices: 93640578--93640721 Score: 93
Period size: 25 Copynumber: 5.7 Consensus size: 26
93640568 TAATATTAAA
* * *
93640578 ATATGTACATAATAT-GTGTTAAAA-
1 ATATATACATAATATAGTATAAAAAT
* *
93640602 ATACATACATAATATAGT-TAAGATAT
1 ATATATACATAATATAGTATAA-AAAT
* * *
93640628 ATACATAAGATAACAT-GTA-AAAAAT
1 ATATAT-ACATAATATAGTATAAAAAT
* * * *
93640653 ATATATAAATAATATAATAT-TAAAG
1 ATATATACATAATATAGTATAAAAAT
*
93640678 ATATATACATAAAATAGTATAAAATAT
1 ATATATACATAATATAGTATAAAA-AT
*
93640705 ATATATACGTAATATAG
1 ATATATACATAATATAG
93640722 AATTTAAAAT
Statistics
Matches: 91, Mismatches: 20, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
24 22 0.24
25 34 0.37
26 12 0.13
27 23 0.25
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (26 bp):
ATATATACATAATATAGTATAAAAAT
Found at i:93640733 original size:27 final size:27
Alignment explanation
Indices: 93640648--93640734 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
93640638 TAACATGTAA
*
93640648 AAAATATATATAAATAATAT--AATATT
1 AAAATATATATACATAATATAGAAT-TT
* * * *
93640674 -AAAGATATATACATAAAATAGTA-TA
1 AAAATATATATACATAATATAGAATTT
*
93640699 AAATATATATATACGTAATATAGAATTT
1 AAA-ATATATATACATAATATAGAATTT
93640727 AAAATATA
1 AAAATATA
93640735 CCTAATATAT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
25 17 0.37
26 2 0.04
27 23 0.50
28 4 0.09
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (27 bp):
AAAATATATATACATAATATAGAATTT
Found at i:93641324 original size:27 final size:28
Alignment explanation
Indices: 93641256--93641443 Score: 207
Period size: 27 Copynumber: 6.9 Consensus size: 28
93641246 TAGGTACAAG
* * *
93641256 TGGTGGTGGAGAAGGTGTGGCTAGTGGGT
1 TGGTGGTGGA-AAAGAGTGGCTAGTGGAT
93641285 T-GTGGTGGAAAAGAGT-GCTAGTGGAT
1 TGGTGGTGGAAAAGAGTGGCTAGTGGAT
*
93641311 TGGTGATGG-AAA-AGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGAGTGGCTAGTGGA-T
93641338 TGGTGGTGGAAAAAGAGT-GCTAGTGGAT
1 TGGTGGTGG-AAAAGAGTGGCTAGTGGAT
93641366 T-G-GGTGGAAAAGA-TGGCTAGTGGA-
1 TGGTGGTGGAAAAGAGTGGCTAGTGGAT
*
93641390 T-GTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAA-GAGTGGCTAGTGGA-T
93641419 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAA-GAGTGGCTAGT
93641444 TGAGAAAATT
Statistics
Matches: 139, Mismatches: 7, Indels: 25
0.81 0.04 0.15
Matches are distributed among these distances:
24 3 0.02
25 27 0.19
26 28 0.20
27 32 0.23
28 10 0.07
29 14 0.10
30 25 0.18
ACGTcount: A:0.24, C:0.04, G:0.47, T:0.26
Consensus pattern (28 bp):
TGGTGGTGGAAAAGAGTGGCTAGTGGAT
Found at i:93641358 original size:55 final size:53
Alignment explanation
Indices: 93641272--93641432 Score: 215
Period size: 55 Copynumber: 3.0 Consensus size: 53
93641262 TGGAGAAGGT
93641272 GTGGCTAGTGG-GTTGTGGTGG-AAAAGAGTGCTAGTGGATTGGTGATGGAAAA
1 GTGGCTAGTGGAGTTGTGGTGGAAAAAGAGTGCTAGTGGATTGGTG-TGGAAAA
93641324 GTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGCTAGTGGATTGG-GTGGAAAA
1 GTGGCTAGTGGAGTT-GTGGTGGAAAAAGAGTGCTAGTGGATTGGTGTGGAAAA
* *
93641377 GATGGCTAGTGGA--TGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAA
1 G-TGGCTAGTGGAGTTGTGGTGGAAAAAGAGT-GCTAGTGGA-TTGGT-GTGGAAAA
93641432 G
1 G
93641433 GAGTGGCTAG
Statistics
Matches: 99, Mismatches: 2, Indels: 13
0.87 0.02 0.11
Matches are distributed among these distances:
51 14 0.14
52 21 0.21
53 15 0.15
54 19 0.19
55 30 0.30
ACGTcount: A:0.25, C:0.04, G:0.46, T:0.25
Consensus pattern (53 bp):
GTGGCTAGTGGAGTTGTGGTGGAAAAAGAGTGCTAGTGGATTGGTGTGGAAAA
Found at i:93641412 original size:81 final size:82
Alignment explanation
Indices: 93641256--93641443 Score: 260
Period size: 81 Copynumber: 2.3 Consensus size: 82
93641246 TAGGTACAAG
* * *
93641256 TGGTGGTGGAGAAGGTGTGGCTAGTGGGTTGTGGTGGAAAAGAGTGCTAGTGGATTGGTGATGGA
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGATTGTGGTGGAAAAGAGTGCTAGTGGATTGGTGATGGA
93641321 AAAGTGGCTAGTGGAGT
66 AAAGTGGCTAGTGGAGT
* *
93641338 TGGTGGTGGAAAAAGAGT-GCTAGTGGATTG-GGTGGAAAAGA-TGGCTAGTGGA-T-GTGGTGG
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGATTGTGGTGGAAAAGAGT-GCTAGTGGATTGGTGATGG
93641398 AAAAGGTGTGGCTAGTGGAGT
65 AAAA---GTGGCTAGTGGAGT
93641419 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
93641444 TGAGAAAATT
Statistics
Matches: 95, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
78 10 0.11
79 2 0.02
80 20 0.21
81 42 0.44
82 21 0.22
ACGTcount: A:0.24, C:0.04, G:0.47, T:0.26
Consensus pattern (82 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGATTGTGGTGGAAAAGAGTGCTAGTGGATTGGTGATGGA
AAAGTGGCTAGTGGAGT
Found at i:93642219 original size:15 final size:15
Alignment explanation
Indices: 93642199--93642237 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
93642189 TATATAATAT
93642199 AAATTGAAAAAACAG
1 AAATTGAAAAAACAG
*
93642214 AAATTG-AAAAGCAG
1 AAATTGAAAAAACAG
93642228 AAATT-AAAAA
1 AAATTGAAAAA
93642238 GACCTCAGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.67, C:0.05, G:0.13, T:0.15
Consensus pattern (15 bp):
AAATTGAAAAAACAG
Found at i:93642391 original size:14 final size:14
Alignment explanation
Indices: 93642368--93642402 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
93642358 AGTTGTTTTT
93642368 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
93642382 TTGAAGAACAGAAA
1 TTGAAAAACAGAAA
93642396 TTGAAAA
1 TTGAAAA
93642403 GACCTCAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:93642451 original size:90 final size:87
Alignment explanation
Indices: 93642300--93642475 Score: 244
Period size: 90 Copynumber: 2.0 Consensus size: 87
93642290 ATTTTTGACA
** * * * **
93642300 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTTGCAATATGAGTTGTT
1 AACAGAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-AA
93642365 TTTTTGAAAAACAGAAATTGAAG
65 TTTTTGAAAAACAGAAATTGAAG
*
93642388 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
*
93642453 ATTTTTGACAAACAGAAATTGAA
64 ATTTTTGAAAAACAGAAATTGAA
93642476 ATTACCTCAG
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
88 22 0.29
89 21 0.27
90 34 0.44
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (87 bp):
AACAGAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
TTTTGAAAAACAGAAATTGAAG
Found at i:93642501 original size:163 final size:158
Alignment explanation
Indices: 93642206--93643011 Score: 746
Period size: 163 Copynumber: 5.1 Consensus size: 158
93642196 TATAAATTGA
*
93642206 AAAAACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACC
1 AAAAACAGAAATT-AAAA-CAGAAATT-AAAA-ACCTCAGC-TGTGAGCCGAGGCTCAACTCA-C
93642271 TCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCC-CGAGG
60 -CTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTCGAGG
* * *
93642335 CTCAACTCACCTTTTGCAATATGAGTTGTTTTTTTG
124 CTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTG
93642371 AAAAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACC
1 AAAAACAGAAATT-AA-AACAGAAATT-AAAA-ACCTCAGC-TGTGAGCCGAGGCTCAACTCACC
93642436 TCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTG-CCTCGAGGCT
61 TCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTCGAGGCT
*
93642500 CAACTCACCTCTCGCAATATGAGTCGATTTTTG
126 CAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
93642533 -AAAACAGAAATT--TA-A-AAA-T----ACCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTC
1 AAAAACAGAAATTAAAACAGAAATTAAAAACCTCAGCTGTGAGCC-GAGGCTCAACTCACCTCTC
* * *
93642586 GCAATATGAGTTGATTTATTTTACGAACAGAAATTGAAAAATAGAAATTGAAAAGACCTCAGCAT
65 GCAATATGAGTT-AATT-TTTGACAAACAGAAA-T------T-GAAATT------ACCTCAGC--
** *
93642651 GTGAGC-CGAGGCTCATCTCACCTCTCGCAATATGAGTTGATTTTTG
112 GTGTCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * *
93642697 ACAAACAGAAATT------GAAATT----ACCTCAGC-GTG-TCTGAGGCTCAACTCACCTCTCG
1 AAAAACAGAAATTAAAACAGAAATTAAAAACCTCAGCTGTGAGCCGAGGCTCAACTCACCTCTCG
* * *
93642750 CATATATGAGTT-A-TTTTGAGAAACAGAAATTGAAATTACCTCAG-GTGTTCTTGAGGCTCAAC
66 CA-ATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTCGAGGCTCAAC
93642812 TCACCTCTCGCAATATGAGTTGA--TTT-
130 TCACCTCTCGCAATATGAGTTGATTTTTG
* *
93642838 AAAAACAGAAATTAAAAACCAGAAATTGAAAATACCTCAGTGTGTGAGCC-AAGCTCAACTCACC
1 AAAAACAGAAATT-AAAA-CAGAAATT-AAAA-ACCTCAG-CTGTGAGCCGAGGCTCAACTCACC
* * ** * * **
93642902 TCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCT-GAGGCT
61 TCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTCGAGGCT
93642966 CAACTCACCTCTCGCAATATGAGTTGATTTTTG
126 CAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
93642999 ACAAACAAAAATT
1 AAAAACAGAAATT
93643012 GAAATTACCT
Statistics
Matches: 551, Mismatches: 40, Indels: 104
0.79 0.06 0.15
Matches are distributed among these distances:
141 12 0.02
142 3 0.01
143 4 0.01
144 32 0.06
145 2 0.00
146 41 0.07
147 3 0.01
148 21 0.04
149 7 0.01
152 6 0.01
153 1 0.00
154 1 0.00
155 11 0.02
156 15 0.03
157 24 0.04
158 59 0.11
159 7 0.01
160 15 0.03
161 24 0.04
162 16 0.03
163 110 0.20
164 65 0.12
165 70 0.13
166 2 0.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (158 bp):
AAAAACAGAAATTAAAACAGAAATTAAAAACCTCAGCTGTGAGCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTCGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTG
Found at i:93642514 original size:73 final size:74
Alignment explanation
Indices: 93642388--93642837 Score: 414
Period size: 73 Copynumber: 5.9 Consensus size: 74
93642378 GAAATTGAAG
* *
93642388 AACAGAAATTGAAAAGACCTCAGCATGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAATACCTCAGC--GTGACCTCGAGGCTCAACTCACCTCTCGCAATATGAGTT
93642452 AATTTTTGACA
64 AATTTTTGACA
* **
93642463 AACAGAAATTGAAATTACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTCGA
1 AACAGAAATTGAAAATACCTCAGCGTGACCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
93642527 TTTTTGA-A
66 TTTTTGACA
* *
93642535 AACAGAAATTTAAAAATACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AACAGAAA-TTGAAAATACCTCAGCGTGACCTCGAGGCTCAACTCACCTCTCGCAATATGAGTT-
* * *
93642599 ATTTATTTTACG
64 AATT-TTTGACA
** * * ** *
93642611 AACAGAAATTGAAAAATAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCATCTCACCTCT
1 AACAGAAATTG-AAAAT---ACCT---CAG-CGT--G-ACCT----CGAGGCTCAACTCACCTCT
*
93642676 CGCAATATGAGTTGATTTTTGACA
51 CGCAATATGAGTTAATTTTTGACA
* *
93642700 AACAGAAATTGAAATTACCTCAGCGTG-TCT-GAGGCTCAACTCACCTCTCGCATATATGAGTT-
1 AACAGAAATTGAAAATACCTCAGCGTGACCTCGAGGCTCAACTCACCTCTCGCA-ATATGAGTTA
*
93642762 A-TTTTGAGA
65 ATTTTTGACA
* ** * *
93642771 AACAGAAATTGAAATTACCTCAG-GTGTTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCAGCGTGACCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
93642835 TTT
66 TTT
93642838 AAAAACAGAA
Statistics
Matches: 315, Mismatches: 33, Indels: 56
0.78 0.08 0.14
Matches are distributed among these distances:
70 3 0.01
71 42 0.13
72 55 0.17
73 100 0.32
74 5 0.02
75 28 0.09
76 13 0.04
77 2 0.01
79 3 0.01
81 2 0.01
82 4 0.01
83 2 0.01
85 3 0.01
86 1 0.00
88 4 0.01
89 16 0.05
90 2 0.01
91 30 0.10
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCAGCGTGACCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
TTTTTGACA
Found at i:93642686 original size:237 final size:234
Alignment explanation
Indices: 93642255--93643228 Score: 1223
Period size: 237 Copynumber: 4.2 Consensus size: 234
93642245 GCATGTGAGC
* **
93642255 CGAGACTCAACTCACCTCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCT
1 CGAGGCTCAACTCA-C-CTCTCGCAATATGAGTCGATTTTTGACAAACAGAAATTGAAATTACCT
* * *
93642320 CAGCGTGTCCCGAGGCTCAACTCACCTTTTGCAATATGAGTTG-TTTTTTTGAAAAACAGAAATT
64 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT--AAAACAGAAATT
*
93642384 GAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
127 -AAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
93642449 GTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGCCT
191 GTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGCCT
* *
93642493 CGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGA-AAACAGAAATTTAAAAATACCTC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGACAAACAGAAA-TTGAAATTACCTC
*
93642557 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTATTTTACGAACAGAAATTG
65 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TTTTA-AAACAGAAATT-
* *
93642622 AAAAATAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCATCTCACCTCTCGCAATATGAG
127 AAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
* *
93642687 TTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCT
192 TTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGCCT
* *
93642730 -GAGGCTCAACTCACCTCTCGCATATATGAGT-TA-TTTTGAGAAACAGAAATTGAAATTACCTC
1 CGAGGCTCAACTCACCTCTCGCA-ATATGAGTCGATTTTTGACAAACAGAAATTGAAATTACCTC
* *
93642792 AG-GTGTTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTAAAAACAGAAATTAA
65 AGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATTAA
* ** * * *
93642853 AAACCAGAAATTGAAAATACCTCAGTGTGTGAGCC-AAGCTCAACTCACCTCTTGCAATATGAGC
129 AAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
** * * **
93642917 TAATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCT
193 TAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTG-CCT
* *
93642960 -GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGACAAACAGAAATTGAAATTACCTCA
* * * *
93643024 GC--GTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAA
66 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTAAAACAGAAATTAAA
* * *
93643087 AAAACGAAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
130 AACA-G-AAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAG
* * * * *
93643149 TTGAA--ATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCC
192 TT-AATTTTTGACAA-ACAGAAATTGAAATTACCTCAGCGTGCCT
*
93643191 CGAGGCTCAACTCACCTCTTGCAATATGAG-CTGATTTT
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTC-GATTTT
93643229 GAAAAAGTAG
Statistics
Matches: 653, Mismatches: 59, Indels: 54
0.85 0.08 0.07
Matches are distributed among these distances:
229 106 0.16
230 63 0.10
231 39 0.06
232 62 0.09
233 46 0.07
234 23 0.04
235 64 0.10
236 107 0.16
237 126 0.19
238 17 0.03
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (234 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGACAAACAGAAATTGAAATTACCTCA
GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATTAAAA
ACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGCCT
Found at i:93642749 original size:72 final size:73
Alignment explanation
Indices: 93642658--93643068 Score: 344
Period size: 71 Copynumber: 5.5 Consensus size: 73
93642648 CATGTGAGCC
*
93642658 GAGGCTCATCTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG
93642723 CGTG-TC-T
66 -GTGTTCTT
*
93642730 GAGGCTCAACTCACCTCTCGCATATATGAGTT-A-TTTTGAGAAACAGAAATTGAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCA-ATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCA
93642793 GGTGTTCTT
65 GGTGTTCTT
* * **
93642802 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT-AAAAACAGAAATT-AAA-AACCAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACC-TCA
**
93642862 ATTGAAAATACCTCAGTGT
65 GGTG----T---TC--T-T
* * * * ** * * **
93642881 GTGAGC-CAAGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACC
1 GAG-GCTCAA-CT-----CACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATT
*
93642945 ACCTCAGCGTG-TCCT
59 ACCTCAG-GTGTTCTT
*
93642960 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCA-
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG
*
93643024 GCG-TCTT
66 GTGTTCTT
*
93643031 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
93643069 TTTGAAACAT
Statistics
Matches: 276, Mismatches: 34, Indels: 59
0.75 0.09 0.16
Matches are distributed among these distances:
68 3 0.01
69 6 0.02
70 15 0.05
71 86 0.31
72 46 0.17
73 54 0.20
76 2 0.01
78 5 0.02
79 12 0.04
80 4 0.01
82 2 0.01
85 19 0.07
87 3 0.01
88 10 0.04
89 4 0.01
90 5 0.02
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (73 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG
GTGTTCTT
Found at i:93642854 original size:13 final size:14
Alignment explanation
Indices: 93642836--93642869 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
93642826 ATGAGTTGAT
93642836 TTAAAAA-CAGAAA
1 TTAAAAACCAGAAA
93642849 TTAAAAACCAGAAA
1 TTAAAAACCAGAAA
*
93642863 TTGAAAA
1 TTAAAAA
93642870 TACCTCAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.65, C:0.09, G:0.09, T:0.18
Consensus pattern (14 bp):
TTAAAAACCAGAAA
Found at i:93642983 original size:73 final size:71
Alignment explanation
Indices: 93642890--93643087 Score: 252
Period size: 73 Copynumber: 2.7 Consensus size: 71
93642880 TGTGAGCCAA
* * *
93642890 GCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC--
93642955 GTCCTGAG
64 GTCCTGAG
** * * **
93642963 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGCGT
*
93643028 CTTGAG
66 CCTGAG
* **
93643034 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATG-AACATAAATTAAAA
93643088 AAACGAAAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
71 41 0.38
72 12 0.11
73 54 0.50
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (71 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGCGT
CCTGAG
Found at i:93642987 original size:158 final size:155
Alignment explanation
Indices: 93642702--93642995 Score: 405
Period size: 158 Copynumber: 1.9 Consensus size: 155
93642692 TTTTGACAAA
* * * *
93642702 CAGAAATTGAAATTACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCATATATGAGTTATTTT
1 CAGAAATTGAAAATACCTCAGCGTGTCAGAAGCTCAACTCACCTCTCGCATATATGAGTAATTTT
* ** *
93642767 GAGAAACAGAAATTGAAATTACCTCAGGTGTTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
66 GAGAAACAGAAATTAAAACCACCTCAGGTGTTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
93642832 TGATTTAAAAACAGAAATTAAAAAC
131 TGATTTAAAAACAGAAATTAAAAAC
* * *
93642857 CAGAAATTGAAAATACCTCAGTGTGTGAGCCAAGCTCAACTCACCTCTTGCA-ATATGAGCTAAT
1 CAGAAATTGAAAATACCTCAGCGTGTCAG--AAGCTCAACTCACCTCTCGCATATATGAG-TAA-
*
93642921 TTTTGATG-AACATAAATTAAAACCACCTCAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAAT
62 TTTTGA-GAAACAGAAATTAAAACCACCTCAG-GTGTTCCTGAGGCTCAACTCACCTCTCGCAAT
93642984 ATGAGTTGATTT
125 ATGAGTTGATTT
93642996 TTGACAAACA
Statistics
Matches: 121, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
155 25 0.21
156 7 0.06
157 21 0.17
158 64 0.53
159 4 0.03
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (155 bp):
CAGAAATTGAAAATACCTCAGCGTGTCAGAAGCTCAACTCACCTCTCGCATATATGAGTAATTTT
GAGAAACAGAAATTAAAACCACCTCAGGTGTTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTAAAAACAGAAATTAAAAAC
Found at i:93643197 original size:72 final size:73
Alignment explanation
Indices: 93643079--93643220 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
93643069 TTTGAAACAT
* * *
93643079 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
93643144 ATGAGTTG
66 ATGAGTTG
* *
93643152 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
93643216 ATGAG
66 ATGAG
93643221 CTGATTTTGA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 59 0.92
73 5 0.08
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (73 bp):
AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTG
Found at i:93643587 original size:71 final size:72
Alignment explanation
Indices: 93643404--93643720 Score: 365
Period size: 71 Copynumber: 4.3 Consensus size: 72
93643394 TGAGTGATTT
* * *
93643404 TTTTTAAAAACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAA
1 TTTTTGAAAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCATCTCTCGCAA
93643468 TATAAGTTGA
63 TATAAGTTGA
* * *
93643478 TTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
1 ---TTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAA
93643543 TATAAGTTGA
63 TATAAGTTGA
* * *
93643553 -ATTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATAT
1 TTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATAT
*
93643617 GAGTTGA
66 AAGTTGA
* * *
93643624 TTTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTAGCA
1 ---TTTTTGAA-AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCA
* *
93643689 ATATGAGCTGA
62 ATATAAGTTGA
93643700 -TTTTGAAAAACA-AAATT-AAAA
1 TTTTTG-AAAACAGAAATTGAAAA
93643721 GGCTTAACTC
Statistics
Matches: 215, Mismatches: 18, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
70 3 0.01
71 71 0.33
72 8 0.04
73 2 0.01
74 1 0.00
75 39 0.18
76 61 0.28
77 30 0.14
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (72 bp):
TTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATAT
AAGTTGA
Found at i:93643668 original size:76 final size:75
Alignment explanation
Indices: 93643370--93643703 Score: 425
Period size: 76 Copynumber: 4.5 Consensus size: 75
93643360 CAGTGTTAAT
* *
93643370 CTGAAGCTCAACT-A-CTCTCGC-ATATGAG-TGATTTTTTTTAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
*
93643431 TCAGCATGTGAAC
66 TCAGC--GTG-TC
* *
93643444 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
*
93643508 TCAACGTGTC
66 TCAGCGTGTC
* * * * *
93643518 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA----ATTTGAAAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
93643579 TCAGCGTGTC
66 TCAGCGTGTC
* * *
93643589 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTGAA-AACAGAAATTGAAAATAC
93643654 CTCAGCGTGTC
65 CTCAGCGTGTC
* *
93643665 CTGAGGCTCAACTCATCTCTAGCAATATGAGCTGATTTT
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
93643704 GAAAAACAAA
Statistics
Matches: 232, Mismatches: 18, Indels: 18
0.87 0.07 0.07
Matches are distributed among these distances:
71 66 0.28
73 10 0.04
74 3 0.01
75 46 0.20
76 71 0.31
77 36 0.16
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (75 bp):
CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
TCAGCGTGTC
Found at i:93643670 original size:147 final size:148
Alignment explanation
Indices: 93643409--93643720 Score: 436
Period size: 147 Copynumber: 2.1 Consensus size: 148
93643399 GATTTTTTTT
93643409 AAAAACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAATATAAG
* * *
93643474 TTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
65 TTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCATCTCTA
*
93643539 GCAATATAAGTTGAATTTG
130 GCAATATAAGCTGAATTTG
* * ** *
93643558 -AAAACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCAGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAG
* * *
93643620 TTGATTTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCT
65 TTGATTTTTTTTGAA-AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCATCTCT
* *
93643685 AGCAATATGAGCTGATTTTG
129 AGCAATATAAGCTGAATTTG
93643705 AAAAACA-AAATT-AAAA
1 AAAAACAGAAATTGAAAA
93643721 GGCTTAACTC
Statistics
Matches: 145, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
145 2 0.01
146 46 0.32
147 66 0.46
148 31 0.21
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.29
Consensus pattern (148 bp):
AAAAACAGAAATTGAAAATACCTCAGCAGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGT
TGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCATCTCTAG
CAATATAAGCTGAATTTG
Found at i:93643938 original size:71 final size:71
Alignment explanation
Indices: 93643726--93643966 Score: 267
Period size: 71 Copynumber: 3.5 Consensus size: 71
93643716 TAAAAGGCTT
* * * ** * **
93643726 AACTCACCTCTC-CAATATGAG-TCA--ATTTAAAAAATAAACTAAAAATACCTCGGCGTGCCCC
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAA-AAATTAAAAATACCTCAACGTGACTT
*
93643787 GAGGCTC
65 GAGGTTC
* * *
93643794 AACTCACTTCTCGCAATATGAGTTGA-TTTTGAAAAAAAAATTAAAAATACCTCAACGTGTCTTG
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGTGACTTG
93643858 AGGTTC
66 AGGTTC
* ** * * *
93643864 AACTCACCTCTCGCAATATGAGTTGATTTTTTTATGATAAATTGAAAATACCTCAATGTGACTTG
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGTGACTTG
93643929 AGGTTC
66 AGGTTC
*
93643935 AACTCACCTCTCACAATATGAGTTGATTTTTT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTT
93643967 GAATTAAAAC
Statistics
Matches: 148, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
68 11 0.07
69 9 0.06
70 53 0.36
71 75 0.51
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.32
Consensus pattern (71 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTAAAAATACCTCAACGTGACTTG
AGGTTC
Found at i:93644204 original size:73 final size:70
Alignment explanation
Indices: 93644118--93644997 Score: 529
Period size: 73 Copynumber: 12.8 Consensus size: 70
93644108 GACGTGTGGC
*
93644118 CCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTAAAAAGCAAAAATTG-AAATACC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTAAAAA-CAAAAATTGAAAATACC
93644182 TCGCGTG
64 TCGCGTG
* * **
93644189 TCCCGAGGCTCAACTCA-CT-TCACAAATATGAGTTGATTTTTTTGATAAAATAAATTTTGAAAA
1 --CCGAGGCTCAACTCACCTCTCGC-AATATGAGTTGA-TTTTTT-A-AAAACAAAAATTGAAAA
93644252 TA-CTCAGCGTG
60 TACCTC-GCGTG
* * *
93644263 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGAAAAC-AAAATTGAAATTAGCTC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAATACCTC
*
93644325 -AG-G
66 GCGTG
* * * *
93644328 CTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAAAAAAAGAAAATTGAAAATA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT---TAAAAACA-AAAATTGAAAATA
93644393 CCTCAGCGTG
62 CCTC-GCGTG
* *
93644403 TCCTGAGGCTCAACTCACCTCTCGCAAT-TGAGTTGA---ATT-AAAACACAAATTGAAAATACC
1 -CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAATACC
*
93644463 TCACGTG
64 TCGCGTG
* * * *
93644470 CTGAGGCTCAACTCA-CTCTCGCAATATGAGTTGA-TTTTGAAAAATAGAAATT--AAA-A----
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAATACCTC
*
93644526 GTGT-
66 GCGTG
* * * *
93644530 TCAAGG-----CTCACCTCTCGCAATATGAGTTGATTCTTTGAAAAACAGAAATTGAAAATTACC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTAAAAACAAAAATTGAAAA-TACC
*
93644590 TCATCGTG
64 TC-GCGTG
*** * * * **
93644598 TCCTGAGGCTCAACTCACCTCTCGCAATATGA-TTGA---AAAAAAATACCAACAGTG----TGT
1 -CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAA-ACAAAAATTGAAAATAC
*
93644655 CT-GAG-G
63 CTCGCGTG
* * * * *
93644661 CTC-A-ACTCACCTCTCGCAATAT-G-AGT-TGA-TT--TTTTTTAAAAA-AAGAAATTG-AAAT
1 C-CGAGGCTCAACTCAC-C--TCTCGCAATATGAGTTGATTTTTTAAAAACAA-AAATTGAAAAT
93644716 ACCTCAGCATGTG
61 ACCTC-GC--GTG
* *
93644729 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTAAAAACAAAAATTGAAAATACCT
*
93644794 CACGTG
65 CGCGTG
* ** * * *
93644800 TCTTGAGGCTCAACTCATTTCTCGCAATAT-AGTTGA-TTTTTGAAAACAGAAATTGAAATTACC
1 -C-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAATACC
93644863 TCAGCGTG
64 TC-GCGTG
* * *
93644871 TCCTGAGGCTCAACTCA--TCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAATTA
1 -CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTAAAAACAAAAATTGAAAATA
93644934 CCTCAGCGTG
62 CCTC-GCGTG
*
93644944 TCCTGAGGCTCAACTCACCTCT-GCAATATGAGTTGA-TTTTGAAAAACAAAAATT
1 -CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATT
93644998 AAAGGCTTAA
Statistics
Matches: 640, Mismatches: 84, Indels: 168
0.72 0.09 0.19
Matches are distributed among these distances:
55 4 0.01
56 19 0.03
57 1 0.00
58 16 0.03
59 1 0.00
60 24 0.04
61 10 0.02
62 3 0.00
63 7 0.01
64 11 0.02
65 57 0.09
66 10 0.02
67 23 0.04
68 39 0.06
69 28 0.04
70 51 0.08
71 46 0.07
72 55 0.09
73 134 0.21
74 46 0.07
75 23 0.04
76 9 0.01
77 23 0.04
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (70 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAATACCTC
GCGTG
Found at i:93644429 original size:77 final size:72
Alignment explanation
Indices: 93644124--93644513 Score: 343
Period size: 65 Copynumber: 5.5 Consensus size: 72
93644114 TGGCCCGAGA
** ** *
93644124 CTCAACTCACCTCTCGCAATATGAGTTGATTCTT-TTAAAAAGCAAAAATTG-AAATACCTCGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTGAAAAAAAAAAAAAATTGAAAATACCTCACG
*
93644187 TGTCCCGAGG
65 TG--CTGAGG
* *** * * **
93644197 CTCAACTCA-CT-TCACAAATATGAGTTGATTTTTTTGATAAAATAAATTTTGAAAATA-CTCAG
1 CTCAACTCACCTCTCGC-AATATGAGTTGA-TTTTGAAAAAAAAAAAAAATTGAAAATACCTCA-
*
93644259 CGTGCCGAGG
63 CGTGCTGAGG
* * *
93644269 CTCAACTCACCTCTCGCAATATGAGTTGATTTTG-----AAAACAAAATTGAAATTAGCTCA-G-
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAAAAAAAAAATTGAAAATACCTCACGT
93644327 GCTGAGG
66 GCTGAGG
*
93644334 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAAAAAAAGAAAATTGAAAATACCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAAAAAAA-AAAATTGAAAATACCTCA-
93644399 CGTGTCCTGAGG
63 CGTG--CTGAGG
* * *
93644411 CTCAACTCACCTCTCGCAAT-TGAGTTGA-ATT-----AAAACACAAATTGAAAATACCTCACGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAAAAAAAAAATTGAAAATACCTCACGT
93644469 GCTGAGG
66 GCTGAGG
93644476 CTCAACTCA-CTCTCGCAATATGAGTTGATTTTGAAAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAA
93644514 TAGAAATTAA
Statistics
Matches: 265, Mismatches: 25, Indels: 56
0.77 0.07 0.16
Matches are distributed among these distances:
64 10 0.04
65 57 0.22
66 8 0.03
67 17 0.06
68 21 0.08
69 5 0.02
71 8 0.03
72 51 0.19
73 39 0.15
74 15 0.06
75 1 0.00
76 8 0.03
77 25 0.09
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (72 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAAAAAAAAAATTGAAAATACCTCACGT
GCTGAGG
Found at i:93644611 original size:130 final size:128
Alignment explanation
Indices: 93644416--93644909 Score: 420
Period size: 130 Copynumber: 3.8 Consensus size: 128
93644406 TGAGGCTCAA
* *
93644416 CTCACCTCTCGCAAT-TGAGTTGA--ATT--AAAACACAAATTGAAAATACCTCA-CGTG--CTG
1 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG-AAATACCTCAGCGTGTCCTG
*
93644473 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTGAAAAATAGAAATTAAAAGTGT-TCAAGG
65 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAA-AGAAATTAAAAGTGTCTCGAGG
*
93644536 CTCACCTCTCGCAATATGAGTTGATTCTTTGAAAAACAGAAATTGAAAATTACCTCATCGTGTCC
1 CTCACCTCTCGCAATATGAGTTGATT-TTTGAAAAACAGAAATTG-AAA-TACCTCAGCGTGTCC
* ** * *
93644601 TGAGGCTCAACTCACCTCTCGCAATATGA-TTGA-----AAAAAA-ATACCAACAGTGTGTCTGA
63 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAAGAAATTAAAAGTGTCTC-GA
93644659 GG
127 GG
* * *
93644661 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAAAGAAATTGAAATACCTCAGCAT
1 -----CTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAATACCTCAGCGT
*
93644726 GTGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAT
59 GT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTGAAAAAAGAAATT---AA-
*
93644790 ACCTCACGTGTCTTGAGG
116 A----A-GTGTCTCGAGG
93644808 CTCAACTCATTTCTCGCAATAT-AGTTGATTTTTG-AAAACAGAAATTGAAATTACCTCAGCGTG
1 CTC-AC-C---TCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAA-TACCTCAGCGTG
93644871 TCCTGAGGCTCAACTCA--TCTCGCAATATGAGTTGATTTT
60 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
93644910 TTTTGAAAAC
Statistics
Matches: 306, Mismatches: 21, Indels: 75
0.76 0.05 0.19
Matches are distributed among these distances:
120 15 0.05
121 8 0.03
123 9 0.03
124 5 0.02
125 8 0.03
126 16 0.05
127 7 0.02
128 4 0.01
129 39 0.13
130 52 0.17
131 30 0.10
132 2 0.01
138 5 0.02
139 6 0.02
142 23 0.08
143 19 0.06
144 31 0.10
146 6 0.02
147 16 0.05
148 5 0.02
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (128 bp):
CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATACCTCAGCGTGTCCTGA
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAAGAAATTAAAAGTGTCTCGAGG
Found at i:93644913 original size:144 final size:143
Alignment explanation
Indices: 93644637--93644997 Score: 500
Period size: 143 Copynumber: 2.5 Consensus size: 143
93644627 TGATTGAAAA
* * *
93644637 AAAATACCAACAGTGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAA
1 AAAATACC-TCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAA
*
93644702 AAAGAAATTGAAATACCTCAGCATGTGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
62 ACAGAAATTGAAATACCTCAGCATGTGCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTT
93644767 TTTTGAAAACAGAAATTG
126 TTTTGAAAACAGAAATTG
**
93644785 AAAATACCTCA-CGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT-AGTTGATTTTTGAAAACA
1 AAAATACCTCAGCGTGTC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACA
*
93644848 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCA-TCTCGCAATATGAGTTGATTTTT
65 GAAATTGAAA-TACCTCAGCATGTGCC-GAGGCTCAACTCACTCTCGCAATATGAGTTGA-TTTT
93644911 TTTGAAAACAGAAATTG
127 TTTGAAAACAGAAATTG
*
93644928 AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT-GCAATATGAGTTGA-TTTTGAAAAAC
1 AAAATACCTCAGCGTGT-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAC
*
93644991 AAAAATT
64 AGAAATT
93644998 AAAGGCTTAA
Statistics
Matches: 194, Mismatches: 11, Indels: 20
0.86 0.05 0.09
Matches are distributed among these distances:
142 18 0.09
143 65 0.34
144 64 0.33
145 1 0.01
146 11 0.06
147 27 0.14
148 8 0.04
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (143 bp):
AAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAG
AAATTGAAATACCTCAGCATGTGCCGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTTTG
AAAACAGAAATTG
Found at i:93645116 original size:67 final size:69
Alignment explanation
Indices: 93645000--93645169 Score: 199
Period size: 67 Copynumber: 2.5 Consensus size: 69
93644990 CAAAAATTAA
* * * **
93645000 AGGCTTAACTCAC-TCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAACT-AAAATACCTCAACGTG
93645063 -CCCG
65 TCCCG
* *
93645067 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAA-A-AAATTAAAATACCTCAACGTGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAACTAAAATACCTCAACGTGT
**
93645130 CTTG
66 CCCG
93645134 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
93645170 CCTTGGAAAG
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
66 15 0.17
67 52 0.58
68 15 0.17
69 8 0.09
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.29
Consensus pattern (69 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAACTAAAATACCTCAACGTGT
CCCG
Found at i:93653387 original size:12 final size:12
Alignment explanation
Indices: 93653367--93653402 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
93653357 TGGGATATGC
*
93653367 AATGTATGAATG
1 AATGCATGAATG
93653379 AATGCATGAATG
1 AATGCATGAATG
93653391 AATGCATGAATG
1 AATGCATGAATG
93653403 TCAAATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:93654996 original size:16 final size:15
Alignment explanation
Indices: 93654975--93655022 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
93654965 GATGTGAATA
93654975 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
93654991 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
93655006 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
93655022 A
1 A
93655023 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:93654998 original size:24 final size:24
Alignment explanation
Indices: 93654971--93655026 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
93654961 TAATGATGTG
*
93654971 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
93654995 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
93655019 AATAATAA
1 AATAATAA
93655027 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:93655005 original size:8 final size:8
Alignment explanation
Indices: 93654971--93655022 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
93654961 TAATGATGTG
*
93654971 AATAATAA
1 AATATTAA
93654979 AATATATAA
1 AATAT-TAA
93654988 AATA-TAA
1 AATATTAA
93654995 AATATTAA
1 AATATTAA
*
93655003 AATATCAA
1 AATATTAA
*
93655011 AATATTAG
1 AATATTAA
93655019 AATA
1 AATA
93655023 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:93655190 original size:20 final size:20
Alignment explanation
Indices: 93655138--93655194 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
93655128 ATACTACATC
*
93655138 AATATGTACATATATAAAAAA
1 AATATGTACATA-ATATAAAA
* * *
93655159 AATACGT-GATAATATTAAA
1 AATATGTACATAATATAAAA
93655178 AATATGTACATAATATA
1 AATATGTACATAATATA
93655195 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AATATGTACATAATATAAAA
Found at i:93655236 original size:22 final size:24
Alignment explanation
Indices: 93655173--93655265 Score: 82
Period size: 25 Copynumber: 3.8 Consensus size: 24
93655163 CGTGATAATA
*
93655173 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
93655198 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
* * **
93655221 TT-AAGATATATACATAAGATAACA
1 TTAAAAATATATACATAATAT-AGG
*
93655245 TGTAAAAATATATATATAATA
1 T-TAAAAATATATACATAATA
93655266 ATATAATATT
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
22 15 0.27
23 4 0.07
24 1 0.02
25 21 0.38
26 14 0.25
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:93655278 original size:28 final size:29
Alignment explanation
Indices: 93655226--93655295 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
93655216 TATAGTTAAG
*
93655226 ATATATACATAAGATAACATGTAAAAATAT
1 ATATATA-ATAATATAACATGTAAAAATAT
* *
93655256 ATATATAATAATATAATAT-TAAAGATAT
1 ATATATAATAATATAACATGTAAAAATAT
*
93655284 ATACATAA-AATA
1 ATATATAATAATA
93655296 GTATAATATA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 4 0.11
28 15 0.42
29 10 0.28
30 7 0.19
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (29 bp):
ATATATAATAATATAACATGTAAAAATAT
Found at i:93655388 original size:23 final size:25
Alignment explanation
Indices: 93655345--93655390 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
93655335 TATACCTAAT
93655345 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
93655370 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
93655391 ACAAAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:93655390 original size:45 final size:51
Alignment explanation
Indices: 93655254--93655390 Score: 128
Period size: 45 Copynumber: 2.7 Consensus size: 51
93655244 ATGTAAAAAT
* * *
93655254 ATATATATAATAATATAATATTAAAGATATATACATAAAATAGTATAATATAT
1 ATATATAT-ATAATATAATATT-AAGAAATATACATAATATAGTATAATATAG
* *
93655307 ATATATATACGTAATATAGA-ATTTA-AAATATACCTAATATA-T-TAA-A-AG
1 ATATATATA--TAATATA-ATATTAAGAAATATACATAATATAGTATAATATAG
93655355 A-ATATATATAATATAATATTAAGAAATATA-ATAATA
1 ATATATATATAATATAATATTAAGAAATATACATAATA
93655391 ACAAAAAAGG
Statistics
Matches: 72, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
44 1 0.01
45 16 0.22
46 7 0.10
47 7 0.10
48 2 0.03
49 1 0.01
50 3 0.04
51 1 0.01
52 14 0.19
53 9 0.12
54 10 0.14
55 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.04, T:0.36
Consensus pattern (51 bp):
ATATATATATAATATAATATTAAGAAATATACATAATATAGTATAATATAG
Found at i:93655913 original size:30 final size:30
Alignment explanation
Indices: 93655877--93655937 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
93655867 TAGGTACAAG
* *
93655877 TGGTGGTGGAGAAGGTA-TGGCTAGTGGAGT
1 TGGTGGTGGAAAAAG-AGTGGCTAGTGGAGT
93655907 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
93655937 T
1 T
93655938 TGTAACAGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:93657278 original size:104 final size:104
Alignment explanation
Indices: 93657143--93657409 Score: 439
Period size: 104 Copynumber: 2.6 Consensus size: 104
93657133 TTGTATATAA
* *
93657143 AGGGGTTGCTGTA-TGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCT
1 AGGGGTTGCT-AAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCT
93657207 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
93657247 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
*
93657311 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
93657351 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
93657410 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
103 1 0.01
104 150 0.99
105 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:93658651 original size:30 final size:30
Alignment explanation
Indices: 93658617--93658764 Score: 244
Period size: 30 Copynumber: 5.0 Consensus size: 30
93658607 GGGTGTTACA
*
93658617 GAGTTGGTGGTGGAAAAGGTGTGGCTAGTG
1 GAGTTGGTGGTGGAAAAGGAGTGGCTAGTG
* *
93658647 GAGTTGGTAGTGGAAAAAGAGT-GCTAGTG
1 GAGTTGGTGGTGGAAAAGGAGTGGCTAGTG
*
93658676 GAGTTGGTGGTGGAAAAAGAGTGGCTAGTG
1 GAGTTGGTGGTGGAAAAGGAGTGGCTAGTG
*
93658706 GAGTTGGTGGTGGAAAAGGTGTGGCTAGTG
1 GAGTTGGTGGTGGAAAAGGAGTGGCTAGTG
93658736 GAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 GAGTTGGTGGTGGAAAAGGAGTGGCTAGT
93658765 TGAGAAAAGT
Statistics
Matches: 110, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
29 28 0.25
30 82 0.75
ACGTcount: A:0.24, C:0.03, G:0.47, T:0.25
Consensus pattern (30 bp):
GAGTTGGTGGTGGAAAAGGAGTGGCTAGTG
Found at i:93658709 original size:59 final size:60
Alignment explanation
Indices: 93658617--93658764 Score: 244
Period size: 59 Copynumber: 2.5 Consensus size: 60
93658607 GGGTGTTACA
*
93658617 GAGTTGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTAGTGGAAAAAGAGT-GCTAGTG
1 GAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTAGTGGAAAAAGAGTGGCTAGTG
* * * *
93658676 GAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTG
1 GAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTAGTGGAAAAAGAGTGGCTAGTG
93658736 GAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 GAGTTGGTGGTGGAAAAGGAGTGGCTAGT
93658765 TGAGAAAAGT
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
59 47 0.57
60 35 0.43
ACGTcount: A:0.24, C:0.03, G:0.47, T:0.25
Consensus pattern (60 bp):
GAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTAGTGGAAAAAGAGTGGCTAGTG
Found at i:93661224 original size:23 final size:24
Alignment explanation
Indices: 93661192--93661247 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
93661182 TGATTTAAAC
* *
93661192 AAATACTTAT-ATTTATATTATTA
1 AAATATTTATAATTTATATTATAA
93661215 AAATATTTATAATTTATATTATAA
1 AAATATTTATAATTTATATTATAA
93661239 AAAT-TTTAT
1 AAATATTTAT
93661248 TATTAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 14 0.47
24 16 0.53
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
AAATATTTATAATTTATATTATAA
Found at i:93661254 original size:15 final size:15
Alignment explanation
Indices: 93661225--93661261 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
93661215 AAATATTTAT
93661225 AATTTATATTATAAA
1 AATTTATATTATAAA
*
93661240 AATTT-TATTATTAA
1 AATTTATATTATAAA
93661254 AATTTATA
1 AATTTATA
93661262 AATTATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AATTTATATTATAAA
Found at i:93661276 original size:38 final size:39
Alignment explanation
Indices: 93661202--93661273 Score: 105
Period size: 36 Copynumber: 1.9 Consensus size: 39
93661192 AAATACTTAT
*
93661202 ATTTATATTATTAAAATATTTATAATTTATATTATAAAA
1 ATTTATATTATTAAAATATTTATAAATTATATTATAAAA
*
93661241 ATTT-TATTATT-AAA-ATTTATAAATTATAATATA
1 ATTTATATTATTAAAATATTTATAAATTATATTATA
93661274 TAATTTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 17 0.55
37 3 0.10
38 7 0.23
39 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (39 bp):
ATTTATATTATTAAAATATTTATAAATTATATTATAAAA
Found at i:93671757 original size:29 final size:29
Alignment explanation
Indices: 93671724--93671779 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
93671714 AATAACAGTT
*
93671724 AATATTTTTTAGTAACAATCAATTGATTC
1 AATATTCTTTAGTAACAATCAATTGATTC
93671753 AATATTCTTTAGTAACAATCAATTGAT
1 AATATTCTTTAGTAACAATCAATTGAT
93671780 CTTTATTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (29 bp):
AATATTCTTTAGTAACAATCAATTGATTC
Found at i:93671829 original size:18 final size:18
Alignment explanation
Indices: 93671788--93671847 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
93671778 ATCTTTATTG
* * *
93671788 TTCAGTATCAGTCAGTCA
1 TTCAGTATTAATCAGTTA
93671806 -TCAGTATTAATCAGTTA
1 TTCAGTATTAATCAGTTA
* *
93671823 TTCAGTAATAATCATTTA
1 TTCAGTATTAATCAGTTA
93671841 TTCAGTA
1 TTCAGTA
93671848 ACAGTTGCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
17 14 0.39
18 22 0.61
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (18 bp):
TTCAGTATTAATCAGTTA
Found at i:93671848 original size:18 final size:18
Alignment explanation
Indices: 93671806--93671893 Score: 76
Period size: 18 Copynumber: 5.1 Consensus size: 18
93671796 CAGTCAGTCA
*
93671806 TCAGTATTAATCAGTTAT
1 TCAGTAATAATCAGTTAT
*
93671824 TCAGTAATAATCATTTAT
1 TCAGTAATAATCAGTTAT
* * *
93671842 TCAGTAACAGT-TGCTTAT
1 TCAGTAATAATCAG-TTAT
* *
93671860 TC---AATAGTCAATTAT
1 TCAGTAATAATCAGTTAT
93671875 TCAGTAATAATCAGTTAT
1 TCAGTAATAATCAGTTAT
93671893 T
1 T
93671894 TAATACCTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
15 11 0.20
18 43 0.80
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (18 bp):
TCAGTAATAATCAGTTAT
Found at i:93671893 original size:33 final size:33
Alignment explanation
Indices: 93671806--93671898 Score: 80
Period size: 33 Copynumber: 2.7 Consensus size: 33
93671796 CAGTCAGTCA
* *
93671806 TCAGTATTAATCAGTTATTCAGTAATAATCATTTAT
1 TCAGTAATAATCAGTTATTC---AATAATCAATTAT
* * * *
93671842 TCAGTAACAGT-TGCTTATTCAATAGTCAATTAT
1 TCAGTAATAATCAG-TTATTCAATAATCAATTAT
*
93671875 TCAGTAATAATCAGTTATTTAATA
1 TCAGTAATAATCAGTTATTCAATA
93671899 CCTTTATTTA
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
33 29 0.64
34 1 0.02
35 1 0.02
36 14 0.31
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.42
Consensus pattern (33 bp):
TCAGTAATAATCAGTTATTCAATAATCAATTAT
Found at i:93673473 original size:4 final size:4
Alignment explanation
Indices: 93673464--93673497 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
93673454 CACATTTGTC
93673464 TTTA TTTA TTTTA TTTA TTTA TTTA CTTTA TTTA
1 TTTA TTTA -TTTA TTTA TTTA TTTA -TTTA TTTA
93673498 ATTAATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:93673478 original size:9 final size:8
Alignment explanation
Indices: 93673464--93673497 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
93673454 CACATTTGTC
93673464 TTTATTTA
1 TTTATTTA
93673472 TTTTATTTA
1 -TTTATTTA
93673481 TTTATTTA
1 TTTATTTA
93673489 CTTTATTTA
1 -TTTATTTA
93673498 ATTAATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTATTTA
Found at i:93673482 original size:13 final size:13
Alignment explanation
Indices: 93673463--93673497 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
93673453 ACACATTTGT
93673463 CTTTATTTATTTTA
1 CTTTATTTA-TTTA
93673477 -TTTATTTATTTA
1 CTTTATTTATTTA
93673489 CTTTATTTA
1 CTTTATTTA
93673498 ATTAATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (13 bp):
CTTTATTTATTTA
Found at i:93675968 original size:13 final size:14
Alignment explanation
Indices: 93675950--93675980 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
93675940 CTATCACATC
93675950 TTTTA-TATTTTCT
1 TTTTATTATTTTCT
93675963 TTTTATTATTTTCT
1 TTTTATTATTTTCT
93675977 TTTT
1 TTTT
93675981 TTTTCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTATTATTTTCT
Found at i:93676410 original size:17 final size:18
Alignment explanation
Indices: 93676388--93676422 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
93676378 AGATTGGGCG
*
93676388 TGTGGGT-AACACGGGTA
1 TGTGGGTCAACAAGGGTA
93676405 TGTGGGTCAACAAGGGTA
1 TGTGGGTCAACAAGGGTA
93676423 CGTCACACGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.11, G:0.40, T:0.23
Consensus pattern (18 bp):
TGTGGGTCAACAAGGGTA
Found at i:93679614 original size:40 final size:40
Alignment explanation
Indices: 93679586--93679731 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
93679576 AAAGCATTCT
* * *
93679586 TTTCAGTGGATTCAGTATGTATGGCTCGAAAGGGCATACG
1 TTTCAGTAGATTCAGTAGGTATGGCTCGAAAGAGCATACG
* * **
93679626 TTTCAGTAGATTCAGTAGGTGTGGCTCAAAATCGCATACG
1 TTTCAGTAGATTCAGTAGGTATGGCTCGAAAGAGCATACG
* * * * * *
93679666 TTTTAGTAGATTCAGTAAGCATGGCTCAAAAGTGCATACA
1 TTTCAGTAGATTCAGTAGGTATGGCTCGAAAGAGCATACG
*
93679706 TTTCAGTAGATTCAATAGGTATGGCT
1 TTTCAGTAGATTCAGTAGGTATGGCT
93679732 TGACTGAGCT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.32
Consensus pattern (40 bp):
TTTCAGTAGATTCAGTAGGTATGGCTCGAAAGAGCATACG
Found at i:93688579 original size:21 final size:21
Alignment explanation
Indices: 93688553--93688597 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
93688543 GTGCACACTA
*
93688553 CTATAATTTGTCAATTCATAT
1 CTATAATTCGTCAATTCATAT
93688574 CTATAATTCGTCAATTCATAT
1 CTATAATTCGTCAATTCATAT
93688595 CTA
1 CTA
93688598 GAAGTACCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.04, T:0.44
Consensus pattern (21 bp):
CTATAATTCGTCAATTCATAT
Found at i:93695655 original size:16 final size:16
Alignment explanation
Indices: 93695634--93695664 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93695624 TAAATCACTA
*
93695634 AAAAATTTTAAAAAAT
1 AAAAATATTAAAAAAT
93695650 AAAAATATTAAAAAA
1 AAAAATATTAAAAAA
93695665 ATAGCTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAATATTAAAAAAT
Found at i:93695665 original size:17 final size:16
Alignment explanation
Indices: 93695634--93695667 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
93695624 TAAATCACTA
*
93695634 AAAAATTTTAAAAAAT
1 AAAAATTTAAAAAAAT
93695650 AAAAATATTAAAAAAAT
1 AAAAAT-TTAAAAAAAT
93695667 A
1 A
93695668 GCTAAATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAATTTAAAAAAAT
Found at i:93695905 original size:35 final size:35
Alignment explanation
Indices: 93695855--93695923 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
93695845 TACTTTTTGA
*
93695855 ATTTAAAGATCCACTTTCAAATTATATATAACAAC
1 ATTTAAAAATCCACTTTCAAATTATATATAACAAC
*
93695890 ATTTAAAAATTCACTTTCAAATTATATATAACAA
1 ATTTAAAAATCCACTTTCAAATTATATATAACAA
93695924 TGTAATATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.36
Consensus pattern (35 bp):
ATTTAAAAATCCACTTTCAAATTATATATAACAAC
Found at i:93697691 original size:31 final size:31
Alignment explanation
Indices: 93697656--93697721 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
93697646 TTCCATTAGC
*
93697656 AAATTTGTAGTCAGCCTTTCTGCAATGTTAA
1 AAATTTGTAGTCAGCCTTTCTGAAATGTTAA
* *
93697687 AAATTTGTAGTCAGTCTTTCTGAAATGTTAC
1 AAATTTGTAGTCAGCCTTTCTGAAATGTTAA
93697718 AAAT
1 AAAT
93697722 ATAGTTTGCG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (31 bp):
AAATTTGTAGTCAGCCTTTCTGAAATGTTAA
Found at i:93701870 original size:19 final size:18
Alignment explanation
Indices: 93701837--93701884 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
93701827 ATTTTCCTTT
* *
93701837 TTTCTTTTTCTTTTCTTC-
1 TTTCTTTCTCTTTTC-ACG
93701855 TTTCTTTCTCTCTTTCACG
1 TTTCTTTCTCT-TTTCACG
93701874 TTTCTTTCTCT
1 TTTCTTTCTCT
93701885 GTAACTTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTCTTTCTCTTTTCACG
Found at i:93703402 original size:20 final size:19
Alignment explanation
Indices: 93703351--93703404 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
93703341 TAATAGATAA
93703351 TTATTATTTATTTAATATT
1 TTATTATTTATTTAATATT
* ** *
93703370 TTAATAAGATATTTATTATT
1 TT-ATTATTTATTTAATATT
93703390 TTATTATTTTATTTA
1 TTATTA-TTTATTTA
93703405 GTATATATAA
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
TTATTATTTATTTAATATT
Found at i:93710219 original size:5 final size:5
Alignment explanation
Indices: 93710205--93710291 Score: 57
Period size: 5 Copynumber: 16.6 Consensus size: 5
93710195 GATGGGGTAG
* * * * *
93710205 GATAT CATAT GATAT GCTAT GATAT GTTAT GAGATAT GATAT GATGT GATAC
1 GATAT GATAT GATAT GATAT GATAT GATAT --GATAT GATAT GATAT GATAT
* * * *
93710257 GAAATGT GCTAT GACAT GATAT GATAA GATAT GAT
1 G--ATAT GATAT GATAT GATAT GATAT GATAT GAT
93710292 GTAAGATAAG
Statistics
Matches: 60, Mismatches: 18, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
5 53 0.88
7 7 0.12
ACGTcount: A:0.37, C:0.06, G:0.22, T:0.36
Consensus pattern (5 bp):
GATAT
Found at i:93711129 original size:18 final size:18
Alignment explanation
Indices: 93711106--93711142 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
93711096 GCCATTTTCT
*
93711106 GTTAAAAAGGAAAAAAAA
1 GTTAAAAACGAAAAAAAA
93711124 GTTAAAAACGAAAAAAAA
1 GTTAAAAACGAAAAAAAA
93711142 G
1 G
93711143 GGGGTTGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.70, C:0.03, G:0.16, T:0.11
Consensus pattern (18 bp):
GTTAAAAACGAAAAAAAA
Found at i:93712436 original size:152 final size:151
Alignment explanation
Indices: 93712131--93712694 Score: 1010
Period size: 152 Copynumber: 3.7 Consensus size: 151
93712121 TATTTTTAAA
* * *
93712131 ATTTTTAAAATTTTCGGATCTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTTTATATT
1 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTA-TTTTTTATATT
93712196 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTTATATTAATTTAGTAAATAAC
65 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTG-TTTTTTATATTAATTTAGTAAATAAC
93712261 CCTGATTTTGGCCATTTGTTTGT
129 CCTGATTTTGGCCATTTGTTTGT
*
93712284 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCGTATTTTATTTTTTTATATT
1 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTA-TTTTTTATATT
93712349 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAATAACC
65 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAATAACC
93712414 CTGATTTTGGCCATTTGTTTGT
130 CTGATTTTGGCCATTTGTTTGT
93712436 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTATATTA
1 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTATATTA
93712501 TTTTAGTACATAATGTTTCAAATGTATTATTTTA---TTTTTTATATTAATTTAGTAAATAACCC
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAATAACCC
93712563 TGATTTTGGCCATTTGTTTGT
131 TGATTTTGGCCATTTGTTTGT
* *
93712584 ATTTTTAATATTTTTGGATTTTATTTTTTAAAATATACTATTTTCATATTTTA-TTTTTATATTA
1 ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTATATTA
*
93712648 TTTTAGTACATAATGTTTCAAATATATTATTTTAGTGTTTTTTATAT
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATAT
93712695 AAAAATAATA
Statistics
Matches: 400, Mismatches: 8, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
147 44 0.11
148 100 0.25
150 10 0.03
151 46 0.12
152 101 0.25
153 99 0.25
ACGTcount: A:0.29, C:0.06, G:0.08, T:0.57
Consensus pattern (151 bp):
ATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTATATTA
TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAATAACCC
TGATTTTGGCCATTTGTTTGT
Found at i:93712747 original size:300 final size:301
Alignment explanation
Indices: 93712136--93712694 Score: 899
Period size: 300 Copynumber: 1.9 Consensus size: 301
93712126 TTAAAATTTT
*
93712136 TAAAATTTTCGGATCTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTTTATATTATTTT
1 TAAAATTTTCGGATCTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTTATATTATTTT
93712201 AGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTTATATTAATTTAGTAAATAACCCTGA
66 AGTACATAATGTTTCAAATGTATTATTTTA--G-TTTTTTATATTAATTTAGTAAATAACCCTGA
*
93712266 TTTTGGCCATTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCGT
128 TTTTGGCCATTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCAT
*
93712331 ATTTTATTTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATA
193 ATTTTA-TTTTTTATATTATTTTAGTACATAATGTTTCAAATATATTATTTTAGTGTTTTTTATA
* * *** * * ****
93712396 TTAATTTAGTAAATAACCCTGATTTTGGCCATTTGTTTGTATTTT
257 TTAATATAGAAAATAACCCTGAAAATAGCCATATGTTTGTAAAAA
* *
93712441 TAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATTTTA-TTTTTTATATTATTTT
1 TAAAATTTTCGGATCTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTTATATTATTTT
93712505 AGTACATAATGTTTCAAATGTATTATTTTA-TTTTTTATATTAATTTAGTAAATAACCCTGATTT
66 AGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTATATTAATTTAGTAAATAACCCTGATTT
* *
93712569 TGGCCATTTGTTTGTATTTTTAATATTTTTGGATTTTATTTTTTAAAATATACTATTTTCATATT
131 TGGCCATTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATT
93712634 TTA-TTTTTATATTATTTTAGTACATAATGTTTCAAATATATTATTTTAGTGTTTTTTATAT
196 TTATTTTTTATATTATTTTAGTACATAATGTTTCAAATATATTATTTTAGTGTTTTTTATAT
93712695 AAAAATAATA
Statistics
Matches: 247, Mismatches: 7, Indels: 7
0.95 0.03 0.03
Matches are distributed among these distances:
298 57 0.23
300 99 0.40
304 46 0.19
305 45 0.18
ACGTcount: A:0.29, C:0.06, G:0.08, T:0.57
Consensus pattern (301 bp):
TAAAATTTTCGGATCTTATTTTTAAAAATATACTATTTTCATATTTTATTTTTTTATATTATTTT
AGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTATATTAATTTAGTAAATAACCCTGATTT
TGGCCATTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTAAAAATATACTATTTTCATATT
TTATTTTTTATATTATTTTAGTACATAATGTTTCAAATATATTATTTTAGTGTTTTTTATATTAA
TATAGAAAATAACCCTGAAAATAGCCATATGTTTGTAAAAA
Found at i:93713065 original size:151 final size:149
Alignment explanation
Indices: 93712696--93713066 Score: 575
Period size: 150 Copynumber: 2.5 Consensus size: 149
93712686 TTTTTATATA
*
93712696 AAAATAATAT-AAAAATAAAATGCGAAAATAGTATATTTTTAAAAATAAAATTCC-AAAATTTTA
1 AAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAA-TCCGAAAATTTTA
* * * *
93712759 TAAATACTAAGAAAGGGCCAAAATTAGAGTTATTTACTAAATTAATATAAAAAAATAAAATAATA
65 AAAATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATATAAAAAAATAAAATAATA
93712824 CATTTGAAACATTATGTACT
130 CATTTGAAACATTATGTACT
* * * *
93712844 AAAATAATATAAAAAAATAAAATACGAAAGTAGTATATTTTTTAAAATAAAATCTGGAAATTTTA
1 AAAATAATAT-AAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAATCCGAAAATTTTA
93712909 AAAATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATATAAAAAACACTAAAATAA
65 AAAATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATATAAAAAA-A-TAAAATAA
*
93712974 TACATTTGAAATATTATGTACT
128 TACATTTGAAACATTATGTACT
* * *
93712996 AAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAGATCCGAAAATTTTAA
1 AAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAATCCGAAAATTTTAA
93713061 AAATAC
66 AAATAC
93713067 GAAAATTTTT
Statistics
Matches: 201, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
148 10 0.05
149 2 0.01
150 95 0.47
151 55 0.27
152 39 0.19
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.30
Consensus pattern (149 bp):
AAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTTAAAAATAAAATCCGAAAATTTTAA
AAATACAAACAAAGGGACAAAATTAGAGTTATTTACTAAATTAATATAAAAAAATAAAATAATAC
ATTTGAAACATTATGTACT
Found at i:93713193 original size:17 final size:16
Alignment explanation
Indices: 93713173--93713215 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
93713163 TTACATCACT
93713173 AAAATTATTATTAAATA
1 AAAATTATT-TTAAATA
* *
93713190 AAAATTAATTTAAATT
1 AAAATTATTTTAAATA
93713206 AAAATATATT
1 AAAAT-TATT
93713216 GAACTACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAAATTATTTTAAATA
Found at i:93713202 original size:16 final size:17
Alignment explanation
Indices: 93713173--93713210 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
93713163 TTACATCACT
*
93713173 AAAATTATTATTAAATA
1 AAAATTAATATTAAATA
*
93713190 AAAATTAAT-TTAAATT
1 AAAATTAATATTAAATA
93713206 AAAAT
1 AAAAT
93713211 ATATTGAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATTAATATTAAATA
Found at i:93716574 original size:14 final size:14
Alignment explanation
Indices: 93716552--93716589 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
93716542 TAATTTTAAT
*
93716552 TAAACTTTAAATCA
1 TAAATTTTAAATCA
*
93716566 TAAATTTTAAATCC
1 TAAATTTTAAATCA
93716580 TAAATTTTAA
1 TAAATTTTAA
93716590 TTAAATCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (14 bp):
TAAATTTTAAATCA
Found at i:93741465 original size:9 final size:8
Alignment explanation
Indices: 93741451--93741475 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
93741441 TAAATAGTGC
93741451 AAAAAAAG
1 AAAAAAAG
93741459 AAAAAAAG
1 AAAAAAAG
93741467 AAAAAAAG
1 AAAAAAAG
93741475 A
1 A
93741476 GACACCTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:93745255 original size:21 final size:20
Alignment explanation
Indices: 93745231--93745273 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
93745221 TGATCAGTTT
93745231 AATTGAAAAGATTAT-TAAAAA
1 AATTGAAAA-A-TATGTAAAAA
*
93745252 AATTTAAAAATATGTAAAAA
1 AATTGAAAAATATGTAAAAA
93745272 AA
1 AA
93745274 CAGGAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 3 0.15
20 9 0.45
21 8 0.40
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (20 bp):
AATTGAAAAATATGTAAAAA
Found at i:93746380 original size:16 final size:16
Alignment explanation
Indices: 93746353--93746391 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
93746343 TGAAATTTTG
93746353 ATTTTGATTTTGAT-TCA
1 ATTTT-ATTTTGATCT-A
93746370 ATTTTATTTTGATCTA
1 ATTTTATTTTGATCTA
93746386 ATTTTA
1 ATTTTA
93746392 CATATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.62
Consensus pattern (16 bp):
ATTTTATTTTGATCTA
Found at i:93748308 original size:13 final size:13
Alignment explanation
Indices: 93748290--93748315 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93748280 CATGTGTTAC
93748290 AAAATTATAATAT
1 AAAATTATAATAT
93748303 AAAATTATAATAT
1 AAAATTATAATAT
93748316 GAACACATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAATTATAATAT
Found at i:93748771 original size:11 final size:10
Alignment explanation
Indices: 93748748--93748781 Score: 59
Period size: 10 Copynumber: 3.3 Consensus size: 10
93748738 ATAGTAAGTG
93748748 TTTTAAATTT
1 TTTTAAATTT
93748758 TTTTAAAGTTT
1 TTTTAAA-TTT
93748769 TTTTAAATTT
1 TTTTAAATTT
93748779 TTT
1 TTT
93748782 AAAAAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (10 bp):
TTTTAAATTT
Found at i:93750357 original size:3 final size:3
Alignment explanation
Indices: 93750351--93750384 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
93750341 ATCATCATCA
*
93750351 TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
93750385 TTTGTTAGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TCT
Found at i:93751605 original size:28 final size:27
Alignment explanation
Indices: 93751574--93751631 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
93751564 GAACTGCTTT
*
93751574 TTTAAAA-AATTAAAAATCATTAAAATTA
1 TTTAAAAGAA-TAAAAATCA-TAAAAATA
*
93751602 TTTAAAAGAATAAAAATTATAAAAATA
1 TTTAAAAGAATAAAAATCATAAAAATA
93751629 TTT
1 TTT
93751632 TTTAATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 10 0.37
28 15 0.56
29 2 0.07
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (27 bp):
TTTAAAAGAATAAAAATCATAAAAATA
Found at i:93752037 original size:3 final size:3
Alignment explanation
Indices: 93752029--93752060 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
93752019 TTTATTTTAT
93752029 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
93752061 TTATCAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:93755979 original size:68 final size:68
Alignment explanation
Indices: 93755860--93756030 Score: 195
Period size: 68 Copynumber: 2.5 Consensus size: 68
93755850 CCTGGTGAAC
* * * * *
93755860 CTCT-TATGTTGCCACAGCCTACCTATGGTCTTACATAGTATTAACCTATGTTTACTGTCCTA-C
1 CTCTATATGTTGCCATAGCCTAGCTATGGTCTTACACAATATTAACCCATGTTTACTGTCCTAGC
*
93755923 TGGA
66 -AGA
* * * * *
93755927 CTCTATATGTTGTCATAGTCTAGCTATGGTTTTACACAATATTGACCCATGTTTACTGTCTTAGC
1 CTCTATATGTTGCCATAGCCTAGCTATGGTCTTACACAATATTAACCCATGTTTACTGTCCTAGC
93755992 AGA
66 AGA
*
93755995 CT-TCATATGTTGCCATAGCCTAGTTATGGTCTTACA
1 CTCT-ATATGTTGCCATAGCCTAGCTATGGTCTTACA
93756031 TATCAGATCT
Statistics
Matches: 86, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
67 5 0.06
68 80 0.93
69 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (68 bp):
CTCTATATGTTGCCATAGCCTAGCTATGGTCTTACACAATATTAACCCATGTTTACTGTCCTAGC
AGA
Found at i:93758079 original size:17 final size:16
Alignment explanation
Indices: 93758057--93758089 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
93758047 ATATGGTCTT
93758057 TTAACCAACTCATATAA
1 TTAACCAACTCA-ATAA
93758074 TTAACCAACTCAATAA
1 TTAACCAACTCAATAA
93758090 ATAATTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.27
Consensus pattern (16 bp):
TTAACCAACTCAATAA
Found at i:93759926 original size:5 final size:5
Alignment explanation
Indices: 93759916--93759946 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
93759906 GACCAAAATC
93759916 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA A
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA A
93759947 TTGGTAGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:93791809 original size:26 final size:26
Alignment explanation
Indices: 93791778--93791828 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
93791768 TAGAAGTACA
*
93791778 TAATTTTA-CTTTCTTATTCTACAAGT
1 TAATTTTAGCTTT-TTAGTCTACAAGT
93791804 TAATTTTAGCTTTTTAGTCTACAAG
1 TAATTTTAGCTTTTTAGTCTACAAG
93791829 AATAAAGCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (26 bp):
TAATTTTAGCTTTTTAGTCTACAAGT
Found at i:93796997 original size:102 final size:102
Alignment explanation
Indices: 93796821--93797011 Score: 265
Period size: 102 Copynumber: 1.9 Consensus size: 102
93796811 CTGGTTTCAC
* * * * * * * * *
93796821 TATCATCTAATTTCTTTAAATTATTACGCTAGAATTCTTTTCATTTTCAAAGAGATACAGAAGCA
1 TATCATCTAATTCCTTAAAATCATTAAGCTAAAAATCTTTCCATTGTCAAAGAGATAAAGAAGCA
*
93796886 TAAATACGGCTAAATGGCAAGAACATGACTGCTAGTT
66 TAAATACGGCTAAATGACAAGAACATGACTGCTAGTT
* * *
93796923 TATCATCTAATTCCTTAAAATCATTAAGCTAAAAATCTTTCCATTGTCAATGAGATAAAGATGTA
1 TATCATCTAATTCCTTAAAATCATTAAGCTAAAAATCTTTCCATTGTCAAAGAGATAAAGAAGCA
93796988 TAAATACGGCTAAATGACAAGAAC
66 TAAATACGGCTAAATGACAAGAAC
93797012 GTTCATGCAG
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
102 76 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (102 bp):
TATCATCTAATTCCTTAAAATCATTAAGCTAAAAATCTTTCCATTGTCAAAGAGATAAAGAAGCA
TAAATACGGCTAAATGACAAGAACATGACTGCTAGTT
Found at i:93797641 original size:25 final size:25
Alignment explanation
Indices: 93797609--93797658 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
93797599 AATAAAGATA
93797609 AATTTTAATGGGAGGATACATTTAT
1 AATTTTAATGGGAGGATACATTTAT
93797634 AATTTTAATGGGAGGATACATTTAT
1 AATTTTAATGGGAGGATACATTTAT
93797659 TCACACAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (25 bp):
AATTTTAATGGGAGGATACATTTAT
Found at i:93799274 original size:14 final size:14
Alignment explanation
Indices: 93799251--93799289 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
93799241 TTTTTCAACA
93799251 TTTTACCTTTTCTT
1 TTTTACCTTTTCTT
* *
93799265 TTTTAACTTTACTT
1 TTTTACCTTTTCTT
93799279 TTTTACCTTTT
1 TTTTACCTTTT
93799290 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTACCTTTTCTT
Found at i:93803744 original size:19 final size:19
Alignment explanation
Indices: 93803719--93803771 Score: 81
Period size: 18 Copynumber: 2.8 Consensus size: 19
93803709 ATGAATAATT
*
93803719 TAAAATTTATAAAAAATCA
1 TAAAAATTATAAAAAATCA
*
93803738 -AAAAATTATAAAAATTCA
1 TAAAAATTATAAAAAATCA
93803756 TAAAAATTATAAAAAA
1 TAAAAATTATAAAAAA
93803772 ATAGTATGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 16 0.53
19 14 0.47
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (19 bp):
TAAAAATTATAAAAAATCA
Found at i:93803750 original size:9 final size:9
Alignment explanation
Indices: 93803715--93803770 Score: 62
Period size: 9 Copynumber: 6.2 Consensus size: 9
93803705 GTTAATGAAT
93803715 AATT-TAAA
1 AATTATAAA
*
93803723 ATTTATAAAA
1 AATTAT-AAA
*
93803733 AATCA-AAA
1 AATTATAAA
93803741 AATTATAAA
1 AATTATAAA
93803750 AATTCATAAA
1 AATT-ATAAA
93803760 AATTATAAA
1 AATTATAAA
93803769 AA
1 AA
93803771 AATAGTATGG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
8 10 0.25
9 15 0.38
10 15 0.38
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (9 bp):
AATTATAAA
Found at i:93803870 original size:31 final size:31
Alignment explanation
Indices: 93803835--93803895 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
93803825 TATTTTAGTA
93803835 ATTAAAAAATAGTAATTTAA-T-TTTTTAAAAT
1 ATTAAAAAATA--AATTTAATTCTTTTTAAAAT
* *
93803866 ATTAATAATTAAATTTAATTCTTTTTAAAA
1 ATTAAAAAATAAATTTAATTCTTTTTAAAA
93803896 GACTACAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
29 7 0.27
30 1 0.04
31 18 0.69
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (31 bp):
ATTAAAAAATAAATTTAATTCTTTTTAAAAT
Found at i:93807592 original size:39 final size:39
Alignment explanation
Indices: 93807547--93807632 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 39
93807537 AACTTAATGT
* *
93807547 CTAGCAGGCCTCGTGTCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCATGCCGGTGATAAATTCAGGTTTATAC
* * *
93807586 CTAGCAGGCCTCATGCCGGTGTTAAGTTCGGGTTTATAC
1 CTAGCAGGCCTCATGCCGGTGATAAATTCAGGTTTATAC
93807625 CTAGCAGG
1 CTAGCAGG
93807633 AAAATTACCG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (39 bp):
CTAGCAGGCCTCATGCCGGTGATAAATTCAGGTTTATAC
Found at i:93809568 original size:5 final size:5
Alignment explanation
Indices: 93809558--93809589 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
93809548 TCAAGTGTGA
93809558 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
93809590 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:93809583 original size:9 final size:9
Alignment explanation
Indices: 93809559--93809589 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
93809549 CAAGTGTGAA
93809559 AAATAAAAT
1 AAATAAAAT
93809568 AAAATAAAAT
1 -AAATAAAAT
93809578 AAATAAAAT
1 AAATAAAAT
93809587 AAA
1 AAA
93809590 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Done.