Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 283 of 343
Found at i:93812264 original size:15 final size:15
Alignment explanation
Indices: 93812244--93812279 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
93812234 ACAATCTATT
93812244 AAACTCATCAGAACA
1 AAACTCATCAGAACA
93812259 AAACTCATCAGAACA
1 AAACTCATCAGAACA
93812274 AAACTC
1 AAACTC
93812280 TAAGCCATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.53, C:0.28, G:0.06, T:0.14
Consensus pattern (15 bp):
AAACTCATCAGAACA
Found at i:93814031 original size:5 final size:5
Alignment explanation
Indices: 93814021--93814052 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
93814011 CAATTTGTGA
93814021 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
93814053 GAATACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:93814046 original size:9 final size:9
Alignment explanation
Indices: 93814022--93814052 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
93814012 AATTTGTGAA
93814022 AAATAAAAT
1 AAATAAAAT
93814031 AAAATAAAAT
1 -AAATAAAAT
93814041 AAATAAAAT
1 AAATAAAAT
93814050 AAA
1 AAA
93814053 GAATACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:93820565 original size:23 final size:23
Alignment explanation
Indices: 93820547--93820600 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
93820537 GGTATACACG
93820547 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACTAA
* **
93820570 TACATAATAATAATA-ATGGTAA
1 TACATAATAAAAATATATACTAA
93820592 TAC-TAATAA
1 TACATAATAA
93820601 TACTAATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 6 0.21
22 8 0.29
23 14 0.50
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (23 bp):
TACATAATAAAAATATATACTAA
Found at i:93820581 original size:3 final size:3
Alignment explanation
Indices: 93820550--93820620 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
93820540 ATACACGTAC
* * * * *
93820550 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATG GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
93820597 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
93820621 CAAGGATATT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:93821108 original size:18 final size:18
Alignment explanation
Indices: 93821081--93821118 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
93821071 AAGAAAAAAA
93821081 AGAAGAGAGAG-GAAAGAG
1 AGAAGAGAGAGAG-AAGAG
*
93821099 AGAAGGGAGAGAGAAGAG
1 AGAAGAGAGAGAGAAGAG
93821117 AG
1 AG
93821119 GGGAATCCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (18 bp):
AGAAGAGAGAGAGAAGAG
Found at i:93832234 original size:34 final size:32
Alignment explanation
Indices: 93832160--93832223 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
93832150 TAAGCAAAAA
93832160 AATGTTGGAATAAACATTATTGTGTGTTGAGT
1 AATGTTGGAATAAACATTATTGTGTGTTGAGT
*
93832192 AATGTTGGAATGAACATTATTGTGTGTTGAGT
1 AATGTTGGAATAAACATTATTGTGTGTTGAGT
93832224 GTTGTGTTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.03, G:0.27, T:0.41
Consensus pattern (32 bp):
AATGTTGGAATAAACATTATTGTGTGTTGAGT
Found at i:93832857 original size:10 final size:10
Alignment explanation
Indices: 93832828--93832866 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
93832818 TTTGAGACTA
*
93832828 TTTAAAAGAT
1 TTTAAAATAT
93832838 TTTGAAAATAT
1 TTT-AAAATAT
*
93832849 TTTAAAATAA
1 TTTAAAATAT
93832859 TTTAAAAT
1 TTTAAAAT
93832867 CGATGCGTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (10 bp):
TTTAAAATAT
Found at i:93845508 original size:9 final size:9
Alignment explanation
Indices: 93845494--93845519 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
93845484 CTATGCCAAG
93845494 AAATGCCAT
1 AAATGCCAT
93845503 AAATGCCAT
1 AAATGCCAT
93845512 AAATGCCA
1 AAATGCCA
93845520 AATTTATAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.12, T:0.19
Consensus pattern (9 bp):
AAATGCCAT
Found at i:93847495 original size:89 final size:89
Alignment explanation
Indices: 93847344--93847554 Score: 338
Period size: 89 Copynumber: 2.4 Consensus size: 89
93847334 ACAACGGTGA
* *
93847344 ATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAAGCCTTAACCTCCTAAGCAGT
1 ATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGCAGT
* *
93847409 AGGGTAATAGGCTGGAAATTACAG
66 AAGGTAATAGGCTGAAAATTACAG
93847433 ATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGCAGT
1 ATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGCAGT
93847498 AAGGTAATAGGCTGAAAATTACAG
66 AAGGTAATAGGCTGAAAATTACAG
93847522 ATCTTG--TATCTCTGAAGTTGCAGTGGAA-CAGAT
1 ATCTTGCCT-TC-CTGAAGTTGCAGT-GAAGCAGAT
93847555 CGAATACAGC
Statistics
Matches: 115, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
87 1 0.01
88 2 0.02
89 109 0.95
90 3 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (89 bp):
ATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGCAGT
AAGGTAATAGGCTGAAAATTACAG
Found at i:93848499 original size:12 final size:12
Alignment explanation
Indices: 93848462--93848501 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
93848452 GAAATAAAGA
93848462 TGTTTTTACTTT
1 TGTTTTTACTTT
* *
93848474 TGTCTTTA-TCT
1 TGTTTTTACTTT
93848485 TGTTTTTACTTT
1 TGTTTTTACTTT
93848497 TGTTT
1 TGTTT
93848502 CTCTTAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.07, C:0.10, G:0.10, T:0.72
Consensus pattern (12 bp):
TGTTTTTACTTT
Found at i:93850514 original size:22 final size:23
Alignment explanation
Indices: 93850481--93850523 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
93850471 CAATTGGATA
*
93850481 TAACTAATTTCAAATGCAAATAT
1 TAACTAATTTCAAATACAAATAT
*
93850504 TAACTAA-TTCACATACAAAT
1 TAACTAATTTCAAATACAAAT
93850524 TATGCAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (23 bp):
TAACTAATTTCAAATACAAATAT
Found at i:93852043 original size:21 final size:19
Alignment explanation
Indices: 93852022--93852072 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 19
93852012 GATTAAATTA
93852022 AATTTAATTAATCATATGTT
1 AATTTAATTAATCATAT-TT
* *
93852042 AATTATGATTAATCTTATTT
1 AATT-TAATTAATCATATTT
93852062 AATTTAATTAA
1 AATTTAATTAA
93852073 ACCAATGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 6 0.22
20 10 0.37
21 11 0.41
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (19 bp):
AATTTAATTAATCATATTT
Found at i:93855059 original size:12 final size:12
Alignment explanation
Indices: 93855042--93855068 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
93855032 ATCTTTTCAT
93855042 GTTAATTAGTTA
1 GTTAATTAGTTA
93855054 GTTAATTAGTTA
1 GTTAATTAGTTA
93855066 GTT
1 GTT
93855069 GATGAGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.52
Consensus pattern (12 bp):
GTTAATTAGTTA
Found at i:93855236 original size:13 final size:13
Alignment explanation
Indices: 93855220--93855258 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
93855210 TTGAGTTTTC
93855220 TTTTGAAGAATTT
1 TTTTGAAGAATTT
* **
93855233 TTTTTAAGTTTTT
1 TTTTGAAGAATTT
93855246 TTTTGAAGAATTT
1 TTTTGAAGAATTT
93855259 CTCTTTAAGT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.62
Consensus pattern (13 bp):
TTTTGAAGAATTT
Found at i:93855265 original size:27 final size:27
Alignment explanation
Indices: 93855204--93855282 Score: 115
Period size: 26 Copynumber: 2.9 Consensus size: 27
93855194 GTTAATAAAA
* *
93855204 TTCTCTTTGAGTTTTCTTTTGAAGAAT
1 TTCTCTTTAAGTTTTTTTTTGAAGAAT
*
93855231 TT-TTTTTAAGTTTTTTTTTGAAGAAT
1 TTCTCTTTAAGTTTTTTTTTGAAGAAT
93855257 TTCTCTTTAAGTTTTTTTTTAGAAGA
1 TTCTCTTTAAGTTTTTTTTT-GAAGA
93855283 GTTTTAATAA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
26 23 0.50
27 18 0.39
28 5 0.11
ACGTcount: A:0.22, C:0.06, G:0.13, T:0.59
Consensus pattern (27 bp):
TTCTCTTTAAGTTTTTTTTTGAAGAAT
Found at i:93859906 original size:21 final size:21
Alignment explanation
Indices: 93859848--93859908 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
93859838 ATAATTTAAT
*
93859848 TTATTTTTAAAATTTAAAAAA
1 TTATTTTTAAAATATAAAAAA
* *
93859869 TTATCTTTAAAAAATAAAAAA
1 TTATTTTTAAAATATAAAAAA
93859890 -TATTTTTAAAAGTATAAAA
1 TTATTTTTAAAA-TATAAAA
93859909 TTTAGTTGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 10 0.29
21 24 0.71
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
TTATTTTTAAAATATAAAAAA
Found at i:93867432 original size:4 final size:4
Alignment explanation
Indices: 93867423--93867447 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
93867413 AAATGGCCGC
93867423 TGTT TGTT TGTT TGTT TGTT TGTT T
1 TGTT TGTT TGTT TGTT TGTT TGTT T
93867448 ATTGCTGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.24, T:0.76
Consensus pattern (4 bp):
TGTT
Found at i:93870478 original size:102 final size:102
Alignment explanation
Indices: 93870314--93870517 Score: 363
Period size: 102 Copynumber: 2.0 Consensus size: 102
93870304 ATTATTTGCT
* ** *
93870314 TTATCCTGATTATATATGTAATTGAATATACAGGGATATATAACATGAATTATTTATGTGAAAGA
1 TTATCCTGATTATATATGTAATAGAATATACAGGGATATATAACATGAATTAGATATATGAAAGA
93870379 TATTGCACAAGTCTTGACCTTCCAAAATATGATGCCC
66 TATTGCACAAGTCTTGACCTTCCAAAATATGATGCCC
*
93870416 TTATCCTGATTATATATGTAATAGAATATACAGGGATATATAACATGAATTAGATATATGAAAGT
1 TTATCCTGATTATATATGTAATAGAATATACAGGGATATATAACATGAATTAGATATATGAAAGA
93870481 TATTGCACAAGTCTTGACCTTCCAAAATATGATGCCC
66 TATTGCACAAGTCTTGACCTTCCAAAATATGATGCCC
93870518 AGTGAAGCGC
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 97 1.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (102 bp):
TTATCCTGATTATATATGTAATAGAATATACAGGGATATATAACATGAATTAGATATATGAAAGA
TATTGCACAAGTCTTGACCTTCCAAAATATGATGCCC
Found at i:93873633 original size:28 final size:28
Alignment explanation
Indices: 93873593--93873649 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
93873583 GTTAGAGTTA
93873593 TGGATAGGAATTAGAATATCCAATTTTT
1 TGGATAGGAATTAGAATATCCAATTTTT
93873621 TGGATAGGAATTAGAATATCCAATTTTT
1 TGGATAGGAATTAGAATATCCAATTTTT
93873649 T
1 T
93873650 CTTTCCATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.40
Consensus pattern (28 bp):
TGGATAGGAATTAGAATATCCAATTTTT
Found at i:93881045 original size:46 final size:46
Alignment explanation
Indices: 93880979--93881071 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
93880969 AGCAAGTAGT
93880979 TAGTTAGATTTTCTATTTGCATGCTTATTGCATCTTGATCACTTTG
1 TAGTTAGATTTTCTATTTGCATGCTTATTGCATCTTGATCACTTTG
93881025 TAGTTAGATTTTCTATTTGCATGCTTATTGCATCTTGATCACTTTG
1 TAGTTAGATTTTCTATTTGCATGCTTATTGCATCTTGATCACTTTG
93881071 T
1 T
93881072 CCCTAAATTC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (46 bp):
TAGTTAGATTTTCTATTTGCATGCTTATTGCATCTTGATCACTTTG
Found at i:93883092 original size:43 final size:43
Alignment explanation
Indices: 93883016--93883101 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
93883006 TATGTGATTC
*
93883016 CGATATGTGTTTACGAGTAAGACCCTGTCTGGGACAG-TGGCAT
1 CGATATGTGGTTACGAGTAAGACCCTGTCTGGGAC-GTTGGCAT
*
93883059 CGATATGTGGTTAC-ATGTAAGACCAC-GTTTGGGACGTTGGCAT
1 CGATATGTGGTTACGA-GTAAGACC-CTGTCTGGGACGTTGGCAT
93883102 TGTACGATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 35 0.92
44 1 0.03
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (43 bp):
CGATATGTGGTTACGAGTAAGACCCTGTCTGGGACGTTGGCAT
Found at i:93884798 original size:22 final size:22
Alignment explanation
Indices: 93884755--93884799 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
93884745 AATTTGTTAC
*
93884755 ATTATATATGTAATTTGTTTTT
1 ATTATATATGTAATTTATTTTT
*
93884777 ATTATATAT-TGATTTATGTTTT
1 ATTATATATGTAATTTAT-TTTT
93884799 A
1 A
93884800 AACCATGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (22 bp):
ATTATATATGTAATTTATTTTT
Found at i:93889438 original size:17 final size:17
Alignment explanation
Indices: 93889418--93889477 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 17
93889408 GAGTAACTCT
93889418 TACTAACCCTTAACTAA
1 TACTAACCCTTAACTAA
**
93889435 TACTAACTGTTATAAC-AGA
1 TACTAAC-CCT-TAACTA-A
93889454 CTAACTAACCCTTAACTAA
1 -T-ACTAACCCTTAACTAA
93889473 TACTA
1 TACTA
93889478 CTTAACTCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
17 11 0.33
18 3 0.09
19 10 0.30
20 3 0.09
21 6 0.18
ACGTcount: A:0.42, C:0.25, G:0.03, T:0.30
Consensus pattern (17 bp):
TACTAACCCTTAACTAA
Found at i:93897982 original size:17 final size:17
Alignment explanation
Indices: 93897960--93898010 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
93897950 CGTGCGACAT
93897960 GGCCGTGTGCACCACAC
1 GGCCGTGTGCACCACAC
* *
93897977 GGCC--GTG--CGACAT
1 GGCCGTGTGCACCACAC
93897990 GGCCGTGTGCACCACAC
1 GGCCGTGTGCACCACAC
93898007 GGCC
1 GGCC
93898011 TAGGGACGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
13 8 0.31
15 6 0.23
17 12 0.46
ACGTcount: A:0.16, C:0.39, G:0.33, T:0.12
Consensus pattern (17 bp):
GGCCGTGTGCACCACAC
Found at i:93898008 original size:30 final size:30
Alignment explanation
Indices: 93897942--93898010 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
93897932 AACGAACGTG
*
93897942 CACACGACCGTGCGACATGGCCGTGTGCAC
1 CACACGGCCGTGCGACATGGCCGTGTGCAC
93897972 CACACGGCCGTGCGACATGGCCGTGTGCAC
1 CACACGGCCGTGCGACATGGCCGTGTGCAC
93898002 CACACGGCC
1 CACACGGCC
93898011 TAGGGACGGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.19, C:0.39, G:0.30, T:0.12
Consensus pattern (30 bp):
CACACGGCCGTGCGACATGGCCGTGTGCAC
Found at i:93898520 original size:17 final size:17
Alignment explanation
Indices: 93898498--93898548 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
93898488 TTATTTCACT
93898498 TTTATTTTCTTTTATTC
1 TTTATTTTCTTTTATTC
* *
93898515 TTTATTTTATTTTAAT-
1 TTTATTTTCTTTTATTC
*
93898531 TTTATCTCTCTTTTATTC
1 TTTAT-TTTCTTTTATTC
93898549 ATCCTTTATT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 5 0.19
17 22 0.81
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTATTTTCTTTTATTC
Found at i:93898524 original size:33 final size:34
Alignment explanation
Indices: 93898479--93898548 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
93898469 CTTTTTTCTT
* *
93898479 TTCTTTGATTTATTTCACTTTTAT-TTTCTTTTA
1 TTCTTTGATTTATTTCAATTTTATCTCTCTTTTA
*
93898512 TTCTTT-ATTTTATTTTAATTTTATCTCTCTTTTA
1 TTCTTTGA-TTTATTTCAATTTTATCTCTCTTTTA
93898546 TTC
1 TTC
93898549 ATCCTTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 1 0.03
33 20 0.62
34 11 0.34
ACGTcount: A:0.16, C:0.13, G:0.01, T:0.70
Consensus pattern (34 bp):
TTCTTTGATTTATTTCAATTTTATCTCTCTTTTA
Found at i:93898544 original size:22 final size:21
Alignment explanation
Indices: 93898487--93898547 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
93898477 TTTTCTTTGA
* * *
93898487 TTTATTTCACTTTTATTTTCT
1 TTTATCTCTCTTTTATTTTAT
* *
93898508 TTTATTCTTTATTTTATTTTAAT
1 TTTA-TCTCTCTTTTATTTT-AT
93898531 TTTATCTCTCTTTTATT
1 TTTATCTCTCTTTTATT
93898548 CATCCTTTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 4 0.13
22 22 0.71
23 5 0.16
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTATCTCTCTTTTATTTTAT
Found at i:93901728 original size:12 final size:12
Alignment explanation
Indices: 93901711--93901744 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
93901701 CCCGGCCGCC
93901711 TATATTAATTTT
1 TATATTAATTTT
93901723 TATATT-ATTTT
1 TATATTAATTTT
93901734 TATA-TAATTTT
1 TATATTAATTTT
93901745 AAAATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 14 0.67
12 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:93901912 original size:30 final size:31
Alignment explanation
Indices: 93901869--93901931 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
93901859 CTTAACAAGT
*
93901869 AAATGTTTCTAAAATAAT-AACAAAATTAAC
1 AAATGTTTCTAAAATAATAAAAAAAATTAAC
93901899 AAATGTGTT-TAAAATAATAAAAAAAATTAAC
1 AAATGT-TTCTAAAATAATAAAAAAAATTAAC
93901930 AA
1 AA
93901932 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 15 0.50
31 15 0.50
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.29
Consensus pattern (31 bp):
AAATGTTTCTAAAATAATAAAAAAAATTAAC
Found at i:93901986 original size:22 final size:22
Alignment explanation
Indices: 93901961--93902003 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
93901951 TATCCAAACA
93901961 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* *
93901983 ATAATAGCAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
93902004 AATAGGGGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.14, G:0.12, T:0.16
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:93902008 original size:11 final size:11
Alignment explanation
Indices: 93901968--93902008 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
93901958 ACAATAACAA
93901968 CAAAATAGTAG
1 CAAAATAGTAG
* *
93901979 CAACATAATAG
1 CAAAATAGTAG
93901990 CAAAATAGTAG
1 CAAAATAGTAG
93902001 CAAAATAG
1 CAAAATAG
93902009 GGGGAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.56, C:0.12, G:0.15, T:0.17
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:93906187 original size:17 final size:17
Alignment explanation
Indices: 93906165--93906198 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
93906155 ATTTTATATA
93906165 TATTAAATATTA-ATTAT
1 TATT-AATATTATATTAT
93906182 TATTAATATTATATTAT
1 TATTAATATTATATTAT
93906199 GAAATAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TATTAATATTATATTAT
Found at i:93906196 original size:14 final size:15
Alignment explanation
Indices: 93906158--93906204 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
93906148 TTCTTAGATT
93906158 TTATATATATTAAATA
1 TTATAT-TATTAAATA
93906174 TTA-ATTATTATTAATA
1 TTATATTATTA--AATA
*
93906190 TTATATTATGAAATA
1 TTATATTATTAAATA
93906205 AATTAAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 10 0.37
17 6 0.22
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
TTATATTATTAAATA
Found at i:93911672 original size:6 final size:6
Alignment explanation
Indices: 93911661--93911688 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
93911651 TCCTACATTA
93911661 TGTTCT TGTTCT TGTTCT TGTTCT TGTT
1 TGTTCT TGTTCT TGTTCT TGTTCT TGTT
93911689 ACTCTCCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.14, G:0.18, T:0.68
Consensus pattern (6 bp):
TGTTCT
Found at i:93919833 original size:17 final size:17
Alignment explanation
Indices: 93919811--93919850 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
93919801 ATCCAACTCT
93919811 ATCCCTAT-CTAAACCCC
1 ATCCCTATCCT-AACCCC
93919828 ATCCCTATCCTAACCCC
1 ATCCCTATCCTAACCCC
93919845 ATCCCT
1 ATCCCT
93919851 CAAATCTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 20 0.91
18 2 0.09
ACGTcount: A:0.25, C:0.50, G:0.00, T:0.25
Consensus pattern (17 bp):
ATCCCTATCCTAACCCC
Found at i:93922326 original size:28 final size:28
Alignment explanation
Indices: 93922281--93922336 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
93922271 ATGCCGTTGA
* *
93922281 ATACTTAATGTCTCGCACACTAAGTGTC
1 ATACTCAATATCTCGCACACTAAGTGTC
*
93922309 ATACTCAATATCTTGCACACTAAGTGTC
1 ATACTCAATATCTCGCACACTAAGTGTC
93922337 GTATAGAGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.32
Consensus pattern (28 bp):
ATACTCAATATCTCGCACACTAAGTGTC
Found at i:93922444 original size:40 final size:40
Alignment explanation
Indices: 93922323--93922457 Score: 180
Period size: 40 Copynumber: 3.4 Consensus size: 40
93922313 TCAATATCTT
* * * *
93922323 GCACACTAAGTGTCGTATAGAGCCGAAGCTATCTCAAATC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATC
* * *
93922363 ACACACTAAGTTCCATATATAGCCGAAGCTATGTCGAATC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATC
* *
93922403 GCACACTAAGTGCCATATATAGCCGAAGCTATTTCGTATC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATC
*
93922443 GCACACTAAATGCCA
1 GCACACTAAGTGCCA
93922458 CAAATAATCG
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATC
Found at i:93923765 original size:83 final size:85
Alignment explanation
Indices: 93923660--93923829 Score: 281
Period size: 83 Copynumber: 2.0 Consensus size: 85
93923650 AGCCACAACA
*
93923660 AAGAATAAATATGTAAATTTCTTCTTGTTGCAACTTTAAAAAAAAACATAAGAAT-G-CTAATCA
1 AAGAATAAATATGTAAATTTCTTCTTGTTACAACTTTAAAAAAAAACATAAGAATGGTCTAATCA
93923723 CTTGGATTCAGTTGTAATCC
66 CTTGGATTCAGTTGTAATCC
* * **
93923743 AAGAATAAATATGTAAATTTCTTCTTGTTATAACTTTTAAAAAAAACATAATTATGGTCTAATCA
1 AAGAATAAATATGTAAATTTCTTCTTGTTACAACTTTAAAAAAAAACATAAGAATGGTCTAATCA
93923808 CTTGGATTCAGTTGTAATCC
66 CTTGGATTCAGTTGTAATCC
93923828 AA
1 AA
93923830 CTTGGGTATA
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
83 50 0.62
84 1 0.01
85 29 0.36
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (85 bp):
AAGAATAAATATGTAAATTTCTTCTTGTTACAACTTTAAAAAAAAACATAAGAATGGTCTAATCA
CTTGGATTCAGTTGTAATCC
Found at i:93925006 original size:16 final size:16
Alignment explanation
Indices: 93924985--93925021 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
93924975 AAAGTATAAT
* *
93924985 ATAAAAAATACAAGAA
1 ATAAAAAATAAAAAAA
93925001 ATAAAAAATAAAAAAA
1 ATAAAAAATAAAAAAA
93925017 ATAAA
1 ATAAA
93925022 TTTTTTTACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.81, C:0.03, G:0.03, T:0.14
Consensus pattern (16 bp):
ATAAAAAATAAAAAAA
Found at i:93925149 original size:16 final size:16
Alignment explanation
Indices: 93925130--93925165 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
93925120 CTTTTCCCCC
93925130 CTCTCCTTCCTCCCTT
1 CTCTCCTTCCTCCCTT
* *
93925146 CTCTCTTTTCTCCCTT
1 CTCTCCTTCCTCCCTT
93925162 CTCT
1 CTCT
93925166 TTCTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (16 bp):
CTCTCCTTCCTCCCTT
Found at i:93925903 original size:11 final size:11
Alignment explanation
Indices: 93925887--93925913 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
93925877 GTACGTATTG
93925887 TATATGTTCTA
1 TATATGTTCTA
93925898 TATATGTTCTA
1 TATATGTTCTA
93925909 TATAT
1 TATAT
93925914 TTTTAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (11 bp):
TATATGTTCTA
Found at i:93927329 original size:27 final size:27
Alignment explanation
Indices: 93927291--93927344 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
93927281 TAAATTACAC
93927291 AATATACGTTATCATCTTATGCATATA
1 AATATACGTTATCATCTTATGCATATA
93927318 AATATACGTTATCATCTTATGCATATA
1 AATATACGTTATCATCTTATGCATATA
93927345 TAATCATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (27 bp):
AATATACGTTATCATCTTATGCATATA
Found at i:93927915 original size:8 final size:8
Alignment explanation
Indices: 93927895--93927928 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
93927885 TTTTAAAATT
93927895 ATAATA-A
1 ATAATATA
*
93927902 ATAATATT
1 ATAATATA
93927910 ATAATATA
1 ATAATATA
93927918 ATAATATA
1 ATAATATA
93927926 ATA
1 ATA
93927929 TAATGAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 6 0.25
8 18 0.75
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAATATA
Found at i:93927920 original size:13 final size:13
Alignment explanation
Indices: 93927892--93927932 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
93927882 AATTTTTAAA
93927892 ATTATAATAAATAAT
1 ATTATAAT--ATAAT
93927907 ATTATAATATAAT
1 ATTATAATATAAT
*
93927920 AATATAATATAAT
1 ATTATAATATAAT
93927933 GAACAATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 17 0.68
15 8 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
ATTATAATATAAT
Found at i:93927941 original size:33 final size:33
Alignment explanation
Indices: 93927894--93927967 Score: 80
Period size: 33 Copynumber: 2.2 Consensus size: 33
93927884 TTTTTAAAAT
* * *
93927894 TATAATAAATAATATTATAATATAATAATAT-A-A
1 TATAATGAACAATA-TAT-ATATAATAAAATGATA
*
93927927 TATAATGAACAATATATGTATAATAAAATGATA
1 TATAATGAACAATATATATATAATAAAATGATA
93927960 TATAATGA
1 TATAATGA
93927968 GATGTATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
31 10 0.29
32 4 0.11
33 21 0.60
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.36
Consensus pattern (33 bp):
TATAATGAACAATATATATATAATAAAATGATA
Found at i:93929673 original size:44 final size:44
Alignment explanation
Indices: 93929625--93930243 Score: 766
Period size: 44 Copynumber: 14.4 Consensus size: 44
93929615 AAACTCAGGA
* * **
93929625 ACGCCAAATCTGTTATTTTTTATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
93929669 ACGCCAAATCCGCTATTTTCAATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
93929713 ACGCCAAATCCGCTATCTTCGATCTGCTCTCTAACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
93929757 ACGCCAAATCAGTTATCTTCGATCTGCTCTCTGAAAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
93929801 ATGCCAAA-----TAT-TT-GATCTGCTCTCT-ATCAATACACAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGA-CAATACAGAG
* *
93929838 ACACCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
93929882 ACGCCAAATCTGCTATTTTCGATCTGCTCTCTGACAATACAAAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
** ** *
93929926 ACATCAAATCAACTATCTTTGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
93929970 ATGTCAAATCAGCTATCTTCGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
93930014 ACGCCAAATCCGCTATCTTCGATCTGCTCTCTAACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
93930058 ATGCCAAATCAGCTATCTTCGATCTGCTCTCTGGCAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
*
93930102 ACGCCAAA-----TAT-TT-GATCTGCTCTCT-ATCAATACACAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGA-CAATACAGAG
* *
93930139 ACACCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
93930183 ACACCAAATCTGTTATCTTCAATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
*
93930227 ACGCCAAATCGGCTATC
1 ACGCCAAATCTGCTATC
93930244 GGTGATCTAC
Statistics
Matches: 507, Mismatches: 50, Indels: 36
0.85 0.08 0.06
Matches are distributed among these distances:
36 1 0.00
37 54 0.11
38 4 0.01
39 6 0.01
42 6 0.01
43 4 0.01
44 430 0.85
45 2 0.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (44 bp):
ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
Found at i:93930192 original size:301 final size:301
Alignment explanation
Indices: 93929646--93930228 Score: 1022
Period size: 301 Copynumber: 1.9 Consensus size: 301
93929636 GTTATTTTTT
* *
93929646 ATCTGCTCTCTGACAATACAGAGACGCCAAATCCGCTATTTTCAATCTGCTCTCTGACAATACAG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTATCTTCAATCTGCTCTCTGACAATACAG
*
93929711 AGACGCCAAATCCGCTATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCAGTTATCTT
66 AGACGCCAAATCCGCTATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCAGCTATCTT
*
93929776 CGATCTGCTCTCTGAAAATACAGAGATGCCAAATATTTGATCTGCTCTCTATCAATACACAGACA
131 CGATCTGCTCTCTGAAAATACAGAGACGCCAAATATTTGATCTGCTCTCTATCAATACACAGACA
* * * *
93929841 CCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATTTTCGATC
196 CCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTGCTATCTTCAATC
93929906 TGCTCTCTGACAATACAAAGACATCAAATCAACTATCTTTG
261 TGCTCTCTGACAATACAAAGACATCAAATCAACTATCTTTG
* * *
93929947 ATCTGCTCTCTGACAATACAGAGATGTCAAATCAGCTATCTTCGATCTGCTCTCTGACAATACAG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTATCTTCAATCTGCTCTCTGACAATACAG
*
93930012 AGACGCCAAATCCGCTATCTTCGATCTGCTCTCTAACAATACAGAGATGCCAAATCAGCTATCTT
66 AGACGCCAAATCCGCTATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCAGCTATCTT
**
93930077 CGATCTGCTCTCTGGCAATACAGAGACGCCAAATATTTGATCTGCTCTCTATCAATACACAGACA
131 CGATCTGCTCTCTGAAAATACAGAGACGCCAAATATTTGATCTGCTCTCTATCAATACACAGACA
*
93930142 CCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTGTTATCTTCAATC
196 CCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTGCTATCTTCAATC
*
93930207 TGCTCTCTGACAATACAGAGAC
261 TGCTCTCTGACAATACAAAGAC
93930229 GCCAAATCGG
Statistics
Matches: 266, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
301 266 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (301 bp):
ATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTATCTTCAATCTGCTCTCTGACAATACAG
AGACGCCAAATCCGCTATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCAGCTATCTT
CGATCTGCTCTCTGAAAATACAGAGACGCCAAATATTTGATCTGCTCTCTATCAATACACAGACA
CCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTGCTATCTTCAATC
TGCTCTCTGACAATACAAAGACATCAAATCAACTATCTTTG
Found at i:93941728 original size:27 final size:27
Alignment explanation
Indices: 93941690--93941743 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
93941680 TAAATTACAC
93941690 AATATACGTTATCATCTTATGCATATA
1 AATATACGTTATCATCTTATGCATATA
93941717 AATATACGTTATCATCTTATGCATATA
1 AATATACGTTATCATCTTATGCATATA
93941744 TAATCATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (27 bp):
AATATACGTTATCATCTTATGCATATA
Found at i:93942314 original size:8 final size:8
Alignment explanation
Indices: 93942294--93942327 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
93942284 TTTTAAAATT
93942294 ATAATA-A
1 ATAATATA
*
93942301 ATAATATT
1 ATAATATA
93942309 ATAATATA
1 ATAATATA
93942317 ATAATATA
1 ATAATATA
93942325 ATA
1 ATA
93942328 TAATGAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 6 0.25
8 18 0.75
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAATATA
Found at i:93942319 original size:13 final size:13
Alignment explanation
Indices: 93942291--93942331 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
93942281 AATTTTTAAA
93942291 ATTATAATAAATAAT
1 ATTATAAT--ATAAT
93942306 ATTATAATATAAT
1 ATTATAATATAAT
*
93942319 AATATAATATAAT
1 ATTATAATATAAT
93942332 GAACAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 17 0.68
15 8 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
ATTATAATATAAT
Found at i:93942518 original size:25 final size:25
Alignment explanation
Indices: 93942459--93942518 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
93942449 ATTTTCATGT
*
93942459 ATAAATAATATTTATAGTAAAATAA
1 ATAAATTATATTTATAGTAAAATAA
* *
93942484 AT-ACTGTATA-TTATATTTAAAATAA
1 ATAAAT-TATATTTATA-GTAAAATAA
93942509 ATAAATTATA
1 ATAAATTATA
93942519 AAGAGAGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
24 7 0.25
25 19 0.68
26 2 0.07
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (25 bp):
ATAAATTATATTTATAGTAAAATAA
Found at i:93944693 original size:29 final size:29
Alignment explanation
Indices: 93944661--93944739 Score: 86
Period size: 30 Copynumber: 2.6 Consensus size: 29
93944651 AACATTATAT
*
93944661 AATAAAATAATATAAAAATAAAATACGAA
1 AATAGAATAATATAAAAATAAAATACGAA
* * * *
93944690 AATAGGATATTTTAAAAAATAAAATCCGAA
1 AATAGAATAATAT-AAAAATAAAATACGAA
93944720 AATAGAATAAATAATAAAAA
1 AATAGAAT-AAT-ATAAAAA
93944740 CAAAGGGCCA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
29 9 0.23
30 22 0.56
31 7 0.18
32 1 0.03
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.23
Consensus pattern (29 bp):
AATAGAATAATATAAAAATAAAATACGAA
Found at i:93945059 original size:304 final size:300
Alignment explanation
Indices: 93944510--93945342 Score: 1294
Period size: 304 Copynumber: 2.7 Consensus size: 300
93944500 GCGGGTTTTT
* *
93944510 TACTAAAATGATATAAAAATAAAATACGAAAATAGTTTATTTTTAAAAAATAAAATACGAAAATA
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATA-TTTTAAAAAATAAAATACGAAAATA
* *
93944575 AAAAAATAAGAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATATAAAAAACACTAAAAT
65 AAATAA-AA-AACAAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAACACTAAAAT
* * *
93944640 AATACATTTGAAACATTATATAATAAAATAATAT-AAAAATAAAATACGAAAATAGGATATTTTA
127 AATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGCATATTTTA
*
93944704 AAAAATAAAATCCGAAAATAGAATAAATAATAAAAACAAAGGGCCAAAACCAGAGTTTTTTACTA
192 AAAAATAAAATCCGAAAATAAAATAAATAATAAAAACAAAGGGCCAAAACCAGAGTTTTTTACTA
*
93944769 AATTAATATAAAAAAACACTAAAATAATATATTTGAAACATTATG
257 AATTAATAT-AAAAAACACTAAAATAATACATTTGAAACATTATG
* * *
93944814 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAATATCCGAAACTAA
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATACGAAAATAA
*
93944879 AATAAAAAA-AGAGAGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAACACTAAAATAAT
66 AATAAAAAACAAAG-GCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAACACTAAAATAAT
*
93944943 ACATTTGAAACATTATGTACTAAAATAATATAAAAAAAATAAAAATACAAAAATAGCATATTTTA
130 ACATTTGAAACATTATGTACTAAAATAATAT--AAAAAAT-AAAATACGAAAATAGCATATTTTA
*
93945008 AAAAATAAAATCCAAAAATAAAATAAATAATAAAAACAAAGGGCCAAAACCAGAGTTTTTTACTA
192 AAAAATAAAATCCGAAAATAAAATAAATAATAAAAACAAAGGGCCAAAACCAGAGTTTTTTACTA
*
93945073 AATTAATATAAAAAACACTAAAATAATACATTTGAAATATTATG
257 AATTAATATAAAAAACACTAAAATAATACATTTGAAACATTATG
*
93945117 TACTAAAATAATATAAAAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATTCGAA
1 TACTAAAATAATAT-----AAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATACGAA
* * *
93945182 AATAAAATGAAAAAACAAACGGTCAAAATCAAATTTTTTTACTAAATTAATATAAAAAACACTAA
61 AATAAAAT-AAAAAACAAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAACACTAA
* *
93945247 AATAATACATTTGAAACATTA-GTACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATT
124 AATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGCATATT
*
93945311 TTAAAAAATAAAATCTGAAAATAAAATAAATA
189 TTAAAAAATAAAATCCGAAAATAAAATAAATA
93945343 CCAAAATATA
Statistics
Matches: 488, Mismatches: 28, Indels: 24
0.90 0.05 0.04
Matches are distributed among these distances:
299 1 0.00
300 80 0.16
301 2 0.00
302 2 0.00
303 80 0.16
304 131 0.27
306 48 0.10
307 7 0.01
308 51 0.10
309 21 0.04
310 64 0.13
311 1 0.00
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (300 bp):
TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATACGAAAATAA
AATAAAAAACAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAACACTAAAATAATA
CATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGCATATTTTAAAAA
ATAAAATCCGAAAATAAAATAAATAATAAAAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATT
AATATAAAAAACACTAAAATAATACATTTGAAACATTATG
Found at i:93945261 original size:153 final size:149
Alignment explanation
Indices: 93944510--93945340 Score: 1199
Period size: 153 Copynumber: 5.5 Consensus size: 149
93944500 GCGGGTTTTT
* * *
93944510 TACTAAAATGATAT-AAAAATAAAATACGAAAATAGTTTATTTTTAAAAAATAAAATACGAAAAT
1 TACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA-TTTTAAAAAATAAAATCCGAAAAT
93944574 AAAA-AAATAAGAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATATAAAAAACACTAAA
65 AAAATAAA-AA-AACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATATAAAAAACACTAAA
*
93944638 ATAATACATTTGAAACATTATA
128 ATAATACATTTGAAACATTATG
* *
93944660 TAATAAAATAATAT-AAAAATAAAATACGAAAATAGGATATTTTAAAAAATAAAATCCGAAAATA
1 TACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAAT-
93944724 GAATAAATAATAAAAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATATAAAAAAACACT
65 --A-AAATAA-AAAAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATAT-AAAAAACACT
*
93944789 AAAATAATATATTTGAAACATTATG
125 AAAATAATACATTTGAAACATTATG
* *
93944814 TACTAAAATAATAT-AAAAATAAAATACGAAAATAGTATATTTTAAAAAATAATATCCGAAACTA
1 TACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
* * *
93944878 AAAT-AAAAAA-AGAGAGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAACACTAAAATA
66 AAATAAAAAAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATATAAAAAACACTAAAATA
93944941 ATACATTTGAAACATTATG
131 ATACATTTGAAACATTATG
* * *
93944960 TACTAAAATAATATAAAAAAAATAAAAATACAAAAATAGCATATTTTAAAAAATAAAATCCAAAA
1 TACTAAAATAATAT--AAAAAAT-AAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAA
93945025 ATAAAATAAATAATAAAAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATATAAAAAACA
63 AT---A-AAATAA-AAAAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATATAAAAAACA
*
93945090 CTAAAATAATACATTTGAAATATTATG
123 CTAAAATAATACATTTGAAACATTATG
*
93945117 TACTAAAATAATATAAAAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATTCGAA
1 TACTAAAATAATAT----AAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAA
* * * * * *
93945182 AATAAAATGAAAAAACAAACGGTCAAAATCAAATTTTTTTACTAAATTAATATAAAAAACACTAA
62 AATAAAATAAAAAAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATATAAAAAACACTAA
93945247 AATAATACATTTGAAACATTA-G
127 AATAATACATTTGAAACATTATG
* *
93945269 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCTGAAAATA
1 TACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
93945334 AAATAAA
66 AAATAAA
93945341 TACCAAAATA
Statistics
Matches: 622, Mismatches: 39, Indels: 42
0.88 0.06 0.06
Matches are distributed among these distances:
146 48 0.08
147 34 0.05
148 59 0.09
149 30 0.05
150 77 0.12
151 1 0.00
152 16 0.03
153 114 0.18
154 105 0.17
155 3 0.00
156 5 0.01
157 82 0.13
158 39 0.06
159 9 0.01
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (149 bp):
TACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATA
AAATAAAAAAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATATAAAAAACACTAAAATA
ATACATTTGAAACATTATG
Found at i:93951754 original size:21 final size:20
Alignment explanation
Indices: 93951710--93951765 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
93951700 AAATTTACCT
93951710 TTTCTTTTCTTTC-TC-CTCC
1 TTTC-TTTCTTTCTTCTCTCC
*
93951729 TTTCTTTCTTTCTTCTCTTC
1 TTTCTTTCTTTCTTCTCTCC
* *
93951749 TATTCTCTCTATCTTCT
1 T-TTCTTTCTTTCTTCT
93951766 TCTGTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 8 0.26
19 6 0.19
20 4 0.13
21 13 0.42
ACGTcount: A:0.04, C:0.32, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTCTTTCTTTCTTCTCTCC
Found at i:93953943 original size:22 final size:21
Alignment explanation
Indices: 93953908--93953964 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 21
93953898 TATTATATTC
*
93953908 ATATTTTAAGTTTATTTCTTT
1 ATATTTTAAATTTATTTCTTT
93953929 ATATTTTAAAATTTATTTCTTT
1 ATATTTT-AAATTTATTTCTTT
93953951 CAGTA-TTTAAATTT
1 -A-TATTTTAAATTT
93953965 CATGAAATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
21 7 0.22
22 19 0.59
23 4 0.12
24 2 0.06
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (21 bp):
ATATTTTAAATTTATTTCTTT
Found at i:93954585 original size:18 final size:18
Alignment explanation
Indices: 93954562--93954597 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
93954552 AGAAAATTGT
93954562 TATTTTCTTGCTGTTTTG
1 TATTTTCTTGCTGTTTTG
*
93954580 TATTTTCTTGTTGTTTTG
1 TATTTTCTTGCTGTTTTG
93954598 CTTCTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.06, C:0.08, G:0.17, T:0.69
Consensus pattern (18 bp):
TATTTTCTTGCTGTTTTG
Found at i:93955181 original size:29 final size:29
Alignment explanation
Indices: 93955148--93955203 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
93955138 TTCAATCTCT
* *
93955148 ATATTTTTAAAATGTTTTTAATTAGTTTA
1 ATATTTTTAAAATATTATTAATTAGTTTA
*
93955177 ATATTTTTATAATATTATTAATTAGTT
1 ATATTTTTAAAATATTATTAATTAGTT
93955204 CAAATAGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (29 bp):
ATATTTTTAAAATATTATTAATTAGTTTA
Found at i:93956476 original size:17 final size:18
Alignment explanation
Indices: 93956440--93956477 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
93956430 GTGGGAATTA
* *
93956440 AAAAAAAAGGTGAAATAG
1 AAAAAAAAGCTGAAAAAG
93956458 AAAAAAAAGCT-AAAAAG
1 AAAAAAAAGCTGAAAAAG
93956475 AAA
1 AAA
93956478 CAATTGAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.74, C:0.03, G:0.16, T:0.08
Consensus pattern (18 bp):
AAAAAAAAGCTGAAAAAG
Found at i:93956692 original size:27 final size:25
Alignment explanation
Indices: 93956661--93956710 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
93956651 ATGACAGAAA
93956661 AAATGAAGGAACAGGAAAAAAGAAATC
1 AAATGAAGGAA-A-GAAAAAAGAAATC
**
93956688 AAATGTGGGAAAGAAAAAAGAAA
1 AAATGAAGGAAAGAAAAAAGAAA
93956711 AAACATGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 1 0.05
27 9 0.43
ACGTcount: A:0.64, C:0.04, G:0.24, T:0.08
Consensus pattern (25 bp):
AAATGAAGGAAAGAAAAAAGAAATC
Found at i:93957372 original size:35 final size:35
Alignment explanation
Indices: 93957333--93957401 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
93957323 ACTTGCCTCT
*
93957333 TCCCACTTTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
93957368 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
93957402 TCACACACCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.17, C:0.49, G:0.12, T:0.22
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:93958261 original size:3 final size:3
Alignment explanation
Indices: 93958246--93958283 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
93958236 GTTATTTTCA
*
93958246 TAT TAT TAA TAT TATT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT T
93958284 GTACATTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:93958611 original size:22 final size:23
Alignment explanation
Indices: 93958583--93958637 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
93958573 CAATTTTTTA
93958583 ATATATATTATATGAATA-ATTT
1 ATATATATTATATGAATATATTT
* *
93958605 ATATATAATATTATGTATATATTT
1 ATATATATTA-TATGAATATATTT
93958629 -TA-ATATTAT
1 ATATATATTAT
93958638 TAGTTATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.04
22 14 0.50
23 9 0.32
24 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATATATTATATGAATATATTT
Found at i:93958630 original size:25 final size:23
Alignment explanation
Indices: 93958578--93958639 Score: 65
Period size: 25 Copynumber: 2.7 Consensus size: 23
93958568 ATAGTCAATT
93958578 TTTTAATATATATTATATGAATA
1 TTTTAATATATATTATATGAATA
* *
93958601 ATTT-ATATATAATATTATGTATATA
1 TTTTAATATATATTA-TATG-A-ATA
93958626 TTTTAATAT-TATTA
1 TTTTAATATATATTA
93958640 GTTATATATC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
22 9 0.29
23 7 0.23
24 1 0.03
25 10 0.32
26 4 0.13
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (23 bp):
TTTTAATATATATTATATGAATA
Found at i:93973189 original size:31 final size:31
Alignment explanation
Indices: 93973144--93973228 Score: 109
Period size: 31 Copynumber: 2.7 Consensus size: 31
93973134 GGGAATTAGT
* *
93973144 CATTCATATTTTGCATATCCATACCCTTTAATA
1 CATTCATA-TTTGCATATTCATACCCTGTAA-A
*
93973177 -ATTTATATTTGCATATTCATACCCTGTAAA
1 CATTCATATTTGCATATTCATACCCTGTAAA
*
93973207 CATTCATATTTACATATTCATA
1 CATTCATATTTGCATATTCATA
93973229 TCTTGTACAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
30 1 0.02
31 39 0.85
32 6 0.13
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.44
Consensus pattern (31 bp):
CATTCATATTTGCATATTCATACCCTGTAAA
Found at i:93981662 original size:10 final size:11
Alignment explanation
Indices: 93981634--93981663 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
93981624 GTATGTAAGC
93981634 TATTTATCTTT
1 TATTTATCTTT
93981645 TATTTATCTTT
1 TATTTATCTTT
93981656 T-TTTATCT
1 TATTTATCT
93981664 GTTAAGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.37
11 12 0.63
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (11 bp):
TATTTATCTTT
Found at i:93982942 original size:22 final size:22
Alignment explanation
Indices: 93982917--93982961 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
93982907 TATGTTAATG
93982917 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
93982939 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
93982961 T
1 T
93982962 TATTAAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:93994767 original size:74 final size:74
Alignment explanation
Indices: 93994641--93995359 Score: 937
Period size: 74 Copynumber: 9.6 Consensus size: 74
93994631 TTCCGTTTCC
* * * *
93994641 AAAATTCAACTTATATTGCGAGAAATGGGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
93994706 TATTTTCAA
66 TATTTTCAA
*
93994715 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
93994780 TATTTTCAA
66 TATTTTCAA
* *
93994789 AAAAATCAACTCATATTGCGAGAGGTGAGGTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
93994854 TATTTTCAAA
66 TATTTTC-AA
*
93994864 AAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
*
93994929 TATTTTTAAAA
66 TA-TTTT-CAA
*
93994940 AAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
*
93995005 TATTTTTAA
66 TATTTTCAA
* * *
93995014 AAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTTGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
*
93995079 TGTTTTCAA
66 TATTTTCAA
* ** *
93995088 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTT-AATTT
93995152 CTATTTTC--
65 CTATTTTCAA
* * * * *
93995160 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGTTGAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTTAATT
* * *
93995225 TGTGTTGTCAA
64 TCTATTTTCAA
* ** ** ** * *
93995236 AAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAAGACATACTTAGGT-ATTGTCAATTT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACACGCTGAGGTAATT-TTAA---
*
93995300 TTTGTATGTTTC--
62 TTTCTAT-TTTCAA
* * *
93995312 AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGACACGCT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACACGCT
93995360 AAATGAGTTG
Statistics
Matches: 582, Mismatches: 49, Indels: 26
0.89 0.07 0.04
Matches are distributed among these distances:
72 36 0.06
73 7 0.01
74 305 0.52
75 74 0.13
76 151 0.26
77 6 0.01
78 3 0.01
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
TATTTTCAA
Found at i:93995641 original size:44 final size:45
Alignment explanation
Indices: 93995552--93995650 Score: 103
Period size: 44 Copynumber: 2.2 Consensus size: 45
93995542 TGAAGCTGTT
* **
93995552 AATCTTATAT-TTCTGAAGTCACAGTAAAGTAGATCGAAGTTACA
1 AATCTTATATCCTCTGAAGTCACAGTAAAGTAGATCGAAGCCACA
* * * *
93995596 AATCTTATATCCT-TGAAGTTACATTGAAGTAGATTGAAGCCACA
1 AATCTTATATCCTCTGAAGTCACAGTAAAGTAGATCGAAGCCACA
* *
93995640 AAGCATATATC
1 AATCTTATATC
93995651 AGAAGAGGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 44 0.98
45 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (45 bp):
AATCTTATATCCTCTGAAGTCACAGTAAAGTAGATCGAAGCCACA
Found at i:93996855 original size:3 final size:3
Alignment explanation
Indices: 93996840--93996877 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
93996830 GTTATTTTCA
*
93996840 TAT TAT TAA TAT TATT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT T
93996878 GTACATTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:93996984 original size:3 final size:3
Alignment explanation
Indices: 93996976--93997005 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
93996966 TGTGTTTCAA
93996976 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
93997006 ATATCCTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:93997210 original size:22 final size:23
Alignment explanation
Indices: 93997182--93997236 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
93997172 CAATTTTTTA
93997182 ATATATATTATATGAATA-ATTT
1 ATATATATTATATGAATATATTT
* *
93997204 ATATATAATATTATGTATATATTT
1 ATATATATTA-TATGAATATATTT
93997228 -TA-ATATTAT
1 ATATATATTAT
93997237 CAGTTATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.04
22 14 0.50
23 9 0.32
24 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATATATTATATGAATATATTT
Found at i:94001226 original size:23 final size:23
Alignment explanation
Indices: 94001183--94001226 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
94001173 TTATTAAAAT
*
94001183 ATTAAATAAATAATAATTATCTA
1 ATTAAATAAATAATAAATATCTA
* *
94001206 ATTAAATAATTATTAAATATC
1 ATTAAATAAATAATAAATATC
94001227 ACCAACATCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (23 bp):
ATTAAATAAATAATAAATATCTA
Found at i:94002637 original size:23 final size:22
Alignment explanation
Indices: 94002602--94002645 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
94002592 TGATTATGTG
94002602 AAAATTTTCAATAAATAAAAAAT
1 AAAATTTTCAAT-AATAAAAAAT
*
94002625 AAAATTATT-AATATTAAAAAA
1 AAAATT-TTCAATAATAAAAAA
94002646 ATATAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 8 0.42
23 9 0.47
24 2 0.11
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (22 bp):
AAAATTTTCAATAATAAAAAAT
Found at i:94002659 original size:22 final size:23
Alignment explanation
Indices: 94002618--94002661 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
94002608 TTCAATAAAT
*
94002618 AAAAAATAAAATTATTAATATTA
1 AAAAAATAAAATTATAAATATTA
*
94002641 AAAAAATATAA-TATAAATATT
1 AAAAAATAAAATTATAAATATT
94002662 TTTAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (23 bp):
AAAAAATAAAATTATAAATATTA
Found at i:94013721 original size:7 final size:7
Alignment explanation
Indices: 94013711--94013735 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
94013701 AACATGTTGC
94013711 TGCAGCA
1 TGCAGCA
94013718 TGCAGCA
1 TGCAGCA
94013725 TGCAGCA
1 TGCAGCA
94013732 TGCA
1 TGCA
94013736 TACAAGCCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.16
Consensus pattern (7 bp):
TGCAGCA
Found at i:94016798 original size:3 final size:3
Alignment explanation
Indices: 94016790--94016876 Score: 72
Period size: 3 Copynumber: 29.0 Consensus size: 3
94016780 GGACTCGTAT
* *
94016790 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T-A ACAA TAA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC-A TCA TCA TCA
* * * *
94016835 T-A ACAA TAA TAA TCA TCA TCA TCA TAA TCA -CTA TCA TCA TCA
1 TCA TC-A TCA TCA TCA TCA TCA TCA TCA TCA TC-A TCA TCA TCA
94016877 AAAGAAGTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
2 3 0.04
3 62 0.91
4 3 0.04
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.31
Consensus pattern (3 bp):
TCA
Found at i:94017958 original size:8 final size:8
Alignment explanation
Indices: 94017945--94018015 Score: 54
Period size: 8 Copynumber: 8.1 Consensus size: 8
94017935 AATTAATTTT
94017945 TTTAAAAA
1 TTTAAAAA
94017953 TTTAAAAA
1 TTTAAAAA
*
94017961 TTCAAAAA
1 TTTAAAAA
*
94017969 TATAAGAACTA
1 TTTAA-AA--A
94017980 TTTTTAAAAA
1 --TTTAAAAA
94017990 TTTTAAAAA
1 -TTTAAAAA
94017999 -TTAAAAA
1 TTTAAAAA
94018006 TTATAAAAA
1 TT-TAAAAA
94018015 T
1 T
94018016 ATTTTTTAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
7 7 0.13
8 19 0.37
9 18 0.35
10 1 0.02
11 1 0.02
12 2 0.04
13 4 0.08
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (8 bp):
TTTAAAAA
Found at i:94017995 original size:38 final size:37
Alignment explanation
Indices: 94017943--94018039 Score: 121
Period size: 37 Copynumber: 2.6 Consensus size: 37
94017933 TTAATTAATT
*
94017943 TTTTTAAAAA-TTTAAAAATTCAAAAA-TATAAGAACTA
1 TTTTTAAAAATTTTAAAAATT-AAAAATTATAA-AAATA
94017980 TTTTTAAAAATTTTAAAAATTAAAAATTATAAAAATA
1 TTTTTAAAAATTTTAAAAATTAAAAATTATAAAAATA
*
94018017 TTTTT--TAATTTTAAAAAATTAAA
1 TTTTTAAAAATTTT-AAAAATTAAA
94018040 TAACTGCTTA
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
35 6 0.11
36 10 0.18
37 24 0.44
38 15 0.27
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (37 bp):
TTTTTAAAAATTTTAAAAATTAAAAATTATAAAAATA
Found at i:94019391 original size:39 final size:39
Alignment explanation
Indices: 94019337--94019451 Score: 221
Period size: 39 Copynumber: 2.9 Consensus size: 39
94019327 ATTCCCCTAC
94019337 ATTCCCCTACATTCAACAACTTTGTACATAAAATGAACT
1 ATTCCCCTACATTCAACAACTTTGTACATAAAATGAACT
94019376 ATTCCCCTACATTCAACAACTTTGTACATAAAATGAACT
1 ATTCCCCTACATTCAACAACTTTGTACATAAAATGAACT
*
94019415 ATTCCCCTACATTCAACAACTTTGTACATAAATTGAA
1 ATTCCCCTACATTCAACAACTTTGTACATAAAATGAA
94019452 GTACCCGCAA
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.31
Consensus pattern (39 bp):
ATTCCCCTACATTCAACAACTTTGTACATAAAATGAACT
Found at i:94022147 original size:6 final size:6
Alignment explanation
Indices: 94022137--94022166 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
94022127 AAACACTCAC
*
94022137 TGATTC TGATTT TGATTT TGATTT TGATTT
1 TGATTT TGATTT TGATTT TGATTT TGATTT
94022167 CGAACTCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.03, G:0.17, T:0.63
Consensus pattern (6 bp):
TGATTT
Found at i:94022219 original size:18 final size:17
Alignment explanation
Indices: 94022187--94022220 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
94022177 CTAGGATTAG
*
94022187 AATTTGATTTTGATTTC
1 AATTTGATTTCGATTTC
94022204 AATTTAGATTTCGATTT
1 AATTT-GATTTCGATTT
94022221 AAGGTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (17 bp):
AATTTGATTTCGATTTC
Found at i:94022611 original size:62 final size:62
Alignment explanation
Indices: 94022359--94022809 Score: 589
Period size: 62 Copynumber: 7.2 Consensus size: 62
94022349 GATTTTGATG
** * * * * * *
94022359 TGTTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTGTATCCT-TCAT
1 TGTTTGTATCTGCCATTAAAT-TAT-ACATTATTAAACTGATGTTTATTGTGTATAT-CTGCCAT
* ** * * * *
94022423 TGTTTGTATCTGTCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTAAAT-TAT-ACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
** * * * * *
94022487 TGTTTGTATCTGCCATTGTATGAATGTCATTATCAAATTGATGTTTATTGTGTATATTTGCCAT
1 TGTTTGTATCTGCCATTAAAT-TAT-ACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
94022551 TGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
*
94022613 TGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTACCAT
1 TGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
* *
94022675 TGTTTGTATCTGCCATTAAATTATACATTATTAAACTAATGTTTATTGTGTATATCTTCCAT
1 TGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
**
94022737 TGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTATCAT
1 TGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
94022799 TGTTTGTATCT
1 TGTTTGTATCT
94022810 AGGCTCCTAT
Statistics
Matches: 365, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
62 225 0.62
63 4 0.01
64 136 0.37
ACGTcount: A:0.26, C:0.13, G:0.14, T:0.47
Consensus pattern (62 bp):
TGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
Found at i:94023113 original size:15 final size:15
Alignment explanation
Indices: 94023093--94023137 Score: 81
Period size: 15 Copynumber: 3.0 Consensus size: 15
94023083 TGAAGAAAAC
94023093 GTGTCTGGTAGTGAT
1 GTGTCTGGTAGTGAT
*
94023108 GTGTCTGGTAGTGAA
1 GTGTCTGGTAGTGAT
94023123 GTGTCTGGTAGTGAT
1 GTGTCTGGTAGTGAT
94023138 AGTGATGCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.16, C:0.07, G:0.40, T:0.38
Consensus pattern (15 bp):
GTGTCTGGTAGTGAT
Found at i:94024936 original size:40 final size:43
Alignment explanation
Indices: 94024774--94024951 Score: 256
Period size: 43 Copynumber: 4.2 Consensus size: 43
94024764 TTGCTGATCA
* *
94024774 CATGCAGTGATTGTTGGAAAGCTATTGACT-TTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
* * *
94024816 TATGCAATGATTATTGGAAAGTTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
94024859 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
* *
94024902 CATGCAATGATTGTT-G-ATG-TGTTGCCTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
*
94024942 CATGTAATGA
1 CATGCAATGA
94024952 GTTTTTTATA
Statistics
Matches: 124, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
40 29 0.23
41 2 0.02
42 26 0.21
43 67 0.54
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (43 bp):
CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
Found at i:94024951 original size:83 final size:85
Alignment explanation
Indices: 94024774--94024951 Score: 263
Period size: 83 Copynumber: 2.1 Consensus size: 85
94024764 TTGCTGATCA
* *
94024774 CATGCAGTGATTGTTGGAAAGCTATTGACTTTTTTTAATATGTATGCAATGATTATTGGAAAGTT
1 CATGCAATGATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATGCAATGATTATTGGAAAGTT
94024839 GTTGACTATTTTTTAATATG
66 GTTGACTATTTTTTAATATG
* * *
94024859 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATGCATGCAATGATTGTT-G-ATG-
1 CATGCAATGATTGTTGGAAAGCTATTGACT-TTTTTTAATATGCATGCAATGATTATTGGAAAGT
*
94024921 TGTTGCCTATTTTTTAATATG
65 TGTTGACTATTTTTTAATATG
*
94024942 CATGTAATGA
1 CATGCAATGA
94024952 GTTTTTTATA
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
83 29 0.34
84 2 0.02
85 29 0.34
86 25 0.29
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (85 bp):
CATGCAATGATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATGCAATGATTATTGGAAAGTT
GTTGACTATTTTTTAATATG
Found at i:94025594 original size:21 final size:21
Alignment explanation
Indices: 94025570--94025617 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
94025560 GTCTGATCCT
*
94025570 AGCAAGAGGCTACCCCAAGTC
1 AGCAAGAGGCTACCCCAACTC
*
94025591 AGCAAGAGGGTACCCCAACTC
1 AGCAAGAGGCTACCCCAACTC
*
94025612 AACAAG
1 AGCAAG
94025618 GTGTCCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.31, G:0.23, T:0.08
Consensus pattern (21 bp):
AGCAAGAGGCTACCCCAACTC
Found at i:94026593 original size:27 final size:26
Alignment explanation
Indices: 94026557--94026671 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
94026547 AGCATGGCTG
* *
94026557 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
94026583 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
94026611 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
94026638 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
94026665 CCAGAAC
1 CCAGAAC
94026672 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:94026616 original size:54 final size:54
Alignment explanation
Indices: 94026557--94026671 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
94026547 AGCATGGCTG
*
94026557 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
94026611 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
94026665 CCAGAAC
1 CCAGAAC
94026672 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:94028323 original size:26 final size:26
Alignment explanation
Indices: 94028287--94028422 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
94028277 CATGAAATTC
* *
94028287 TTATCGTGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
94028313 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
94028339 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
94028365 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
94028391 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
94028417 TTATCA
1 TTATCA
94028423 ATTTGTATCA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:94029245 original size:56 final size:56
Alignment explanation
Indices: 94029154--94029265 Score: 181
Period size: 56 Copynumber: 2.0 Consensus size: 56
94029144 TTATCATGCT
* *
94029154 ATTTGTTATCCAACTGTTATCTTTTCTAACTAGCAGCCATGTATACCAACTGTTAA
1 ATTTGTTATCCAACTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAA
*
94029210 ATTTGTATAT-CAATTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAA
1 ATTTGT-TATCCAACTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAA
94029266 GCAATTTGTA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
56 49 0.94
57 3 0.06
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (56 bp):
ATTTGTTATCCAACTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAA
Found at i:94029354 original size:28 final size:30
Alignment explanation
Indices: 94029322--94029380 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
94029312 AGCCGTTTTT
94029322 AACAC-ATGT-TAAGCAACAAAAATATTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
* * *
94029350 AACACAATTTGTAATCAACAAAAATTTTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
94029380 A
1 A
94029381 TTTCATTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 5 0.19
29 3 0.12
30 18 0.69
ACGTcount: A:0.49, C:0.20, G:0.05, T:0.25
Consensus pattern (30 bp):
AACACAATGTGTAAGCAACAAAAATATTCC
Found at i:94029839 original size:3 final size:3
Alignment explanation
Indices: 94029824--94029877 Score: 67
Period size: 3 Copynumber: 18.3 Consensus size: 3
94029814 CCATTTTTCC
* *
94029824 TCT TCT CCT TCT TCT TCT TC- TCT TCCT GCT TC- TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT T-CT TCT TCT TCT TCT TCT TCT
94029868 TCT TCT TCT T
1 TCT TCT TCT T
94029878 TTTCCAAACC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
2 4 0.09
3 38 0.86
4 2 0.05
ACGTcount: A:0.00, C:0.37, G:0.02, T:0.61
Consensus pattern (3 bp):
TCT
Found at i:94038692 original size:16 final size:16
Alignment explanation
Indices: 94038671--94038701 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94038661 CAAAATTCTT
94038671 GGACAATCTTCTCATA
1 GGACAATCTTCTCATA
*
94038687 GGACAATCTTTTCAT
1 GGACAATCTTCTCAT
94038702 TCCATATGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (16 bp):
GGACAATCTTCTCATA
Found at i:94044221 original size:16 final size:15
Alignment explanation
Indices: 94044195--94044228 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
94044185 ATTAATTTTT
94044195 AAATTTTAAAAATTA
1 AAATTTTAAAAATTA
94044210 AAATTATTAAAAATTA
1 AAATT-TTAAAAATTA
94044226 AAA
1 AAA
94044229 AGATATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AAATTTTAAAAATTA
Found at i:94044721 original size:23 final size:24
Alignment explanation
Indices: 94044670--94044721 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
94044660 AGGGAGTCGA
* *
94044670 AATT-AAATTGTAATTTTTACGAT
1 AATTAAAAATGTAATTTTTACAAT
94044693 AA-TAAAAATGTAATTTTTA-AAT
1 AATTAAAAATGTAATTTTTACAAT
94044715 AATTAAA
1 AATTAAA
94044722 TAAAAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 5 0.20
23 20 0.80
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (24 bp):
AATTAAAAATGTAATTTTTACAAT
Found at i:94045345 original size:20 final size:20
Alignment explanation
Indices: 94045320--94045359 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
94045310 ATGATCTAAC
94045320 TGCCATATTTCATATTCCAT
1 TGCCATATTTCATATTCCAT
94045340 TGCCATATTTCATATTCCAT
1 TGCCATATTTCATATTCCAT
94045360 AGATCATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.45
Consensus pattern (20 bp):
TGCCATATTTCATATTCCAT
Found at i:94054104 original size:8 final size:9
Alignment explanation
Indices: 94054092--94054290 Score: 77
Period size: 9 Copynumber: 21.0 Consensus size: 9
94054082 TTTTATGATT
94054092 TTTTTATAA
1 TTTTTATAA
*
94054101 TTTTTATTA
1 TTTTTATAA
94054110 TTTTATATCAA
1 TTTT-TAT-AA
* *
94054121 TTTTAATAC
1 TTTTTATAA
94054130 TTTTTATAA
1 TTTTTATAA
*
94054139 TTTTTATGA
1 TTTTTATAA
94054148 TTTTTATAA
1 TTTTTATAA
**
94054157 AATTTA-ATA
1 TTTTTATA-A
94054166 TGTCTTTATAAA
1 T-T-TTTAT-AA
*
94054178 ATTTTA-AA
1 TTTTTATAA
94054186 TATACTTTATTAA
1 T-T--TTTA-TAA
94054199 -TTTTATAAA
1 TTTTTAT-AA
*
94054208 TATTTTAGAA
1 T-TTTTATAA
*
94054218 -TTTTAT-G
1 TTTTTATAA
94054225 TTTTTGATAA
1 TTTTT-ATAA
**
94054235 AATTTATATA
1 TTTTTATA-A
94054245 TTTTT-TAA
1 TTTTTATAA
94054253 TTTTTATAA
1 TTTTTATAA
* *
94054262 GATTATATCAA
1 -TTTTTAT-AA
* *
94054273 TTTTCATAT
1 TTTTTATAA
94054282 TTTTTATAA
1 TTTTTATAA
94054291 AGATTTTCTG
Statistics
Matches: 138, Mismatches: 30, Indels: 44
0.65 0.14 0.21
Matches are distributed among these distances:
8 19 0.14
9 66 0.48
10 27 0.20
11 22 0.16
12 1 0.01
13 3 0.02
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (9 bp):
TTTTTATAA
Found at i:94054104 original size:20 final size:19
Alignment explanation
Indices: 94054079--94054156 Score: 88
Period size: 20 Copynumber: 4.1 Consensus size: 19
94054069 GTCTAATTCA
94054079 AATTTTTATGATTTTTTTAT
1 AATTTTTATGA-TTTTTTAT
* *
94054099 AATTTTTATTATTTTATAT
1 AATTTTTATGATTTTTTAT
* *
94054118 CAATTTTAAT-ACTTTTTAT
1 -AATTTTTATGATTTTTTAT
94054137 AATTTTTATGA-TTTTTAT
1 AATTTTTATGATTTTTTAT
94054155 AA
1 AA
94054157 AATTTAATAT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
18 17 0.34
19 15 0.30
20 18 0.36
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (19 bp):
AATTTTTATGATTTTTTAT
Found at i:94054162 original size:18 final size:18
Alignment explanation
Indices: 94054092--94054249 Score: 68
Period size: 19 Copynumber: 8.3 Consensus size: 18
94054082 TTTTATGATT
** *
94054092 TTTTTATAATTTTTATTA
1 TTTTTATAAAATTTAATA
* *
94054110 TTTTATATCAATTTTAATA
1 TTTT-TATAAAATTTAATA
* *
94054129 CTTTTTAT-AATTTTTATGA
1 -TTTTTATAAAATTTAAT-A
94054148 TTTTTATAAAATTTAATA
1 TTTTTATAAAATTTAATA
94054166 TGTCTTTATAAAATTTTAAATA
1 T-T-TTTATAAAA-TTT-AATA
* * * *
94054188 TACTTTATTAATTTTATAAA
1 T-TTTTATAAAATTTA-ATA
* * * *
94054208 TATTT-TAGAATTTTATG
1 TTTTTATAAAATTTAATA
94054225 TTTTTGATAAAATTTATATA
1 TTTTT-ATAAAATTTA-ATA
94054245 TTTTT
1 TTTTT
94054250 TAATTTTTAT
Statistics
Matches: 106, Mismatches: 22, Indels: 22
0.71 0.15 0.15
Matches are distributed among these distances:
17 5 0.05
18 26 0.25
19 34 0.32
20 26 0.25
21 10 0.09
22 5 0.05
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTTTATAAAATTTAATA
Found at i:94054176 original size:38 final size:38
Alignment explanation
Indices: 94054092--94054165 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
94054082 TTTTATGATT
* * *
94054092 TTTTTATAATTTTTATTATTTTATATCAATTTTAATAC
1 TTTTTATAATTTTTATGATTTTATATAAAATTTAATAC
94054130 TTTTTATAATTTTTATGATTTT-TATAAAATTTAATA
1 TTTTTATAATTTTTATGATTTTATATAAAATTTAATA
94054166 TGTCTTTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 12 0.36
38 21 0.64
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (38 bp):
TTTTTATAATTTTTATGATTTTATATAAAATTTAATAC
Found at i:94054193 original size:21 final size:22
Alignment explanation
Indices: 94054150--94054210 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
94054140 TTTTATGATT
*
94054150 TTTATAAAA-TTT-AATATGTC
1 TTTATAAAATTTTAAATATGAC
94054170 TTTATAAAATTTTAAATAT-AC
1 TTTATAAAATTTTAAATATGAC
* *
94054191 TTTATTAATTTTATAAATAT
1 TTTATAAAATTT-TAAATAT
94054211 TTTAGAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 9 0.26
21 14 0.40
22 12 0.34
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTATAAAATTTTAAATATGAC
Found at i:94054214 original size:20 final size:20
Alignment explanation
Indices: 94054177--94054223 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
94054167 GTCTTTATAA
*
94054177 AATTTTA-AATATACTTTATT
1 AATTTTATAATATACTTTA-G
*
94054197 AATTTTATAA-ATATTTTAG
1 AATTTTATAATATACTTTAG
94054216 AATTTTAT
1 AATTTTAT
94054224 GTTTTTGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.33
20 14 0.58
21 2 0.08
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
AATTTTATAATATACTTTAG
Found at i:94057306 original size:83 final size:83
Alignment explanation
Indices: 94057207--94057370 Score: 220
Period size: 83 Copynumber: 2.0 Consensus size: 83
94057197 TGAAGATGGT
* * * * * * * *
94057207 TTAGAGTGTAAGATTATTTAGTATATTATCATGTATTTAATATTATCTTATTTTATCCATTTAGT
1 TTAGAATGTAAAATTATTTAGTACACTATCAGGTATGTAATATTAGCTTATTTGATCCATTTAGT
* *
94057272 TGGAGGGTAAAATTTTAC
66 TAGAAGGTAAAATTTTAC
* *
94057290 TTAGAATGTAAAATTATTTAGTACACTATCGGGTATGTAATATTAGCTTATTTGATTCATTTAGT
1 TTAGAATGTAAAATTATTTAGTACACTATCAGGTATGTAATATTAGCTTATTTGATCCATTTAGT
94057355 TAGAAGGTAAAATTTT
66 TAGAAGGTAAAATTTT
94057371 GCTATTTGGT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
83 69 1.00
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.46
Consensus pattern (83 bp):
TTAGAATGTAAAATTATTTAGTACACTATCAGGTATGTAATATTAGCTTATTTGATCCATTTAGT
TAGAAGGTAAAATTTTAC
Found at i:94057405 original size:93 final size:93
Alignment explanation
Indices: 94057293--94057463 Score: 249
Period size: 93 Copynumber: 1.8 Consensus size: 93
94057283 ATTTTACTTA
*
94057293 GAATGTAAAATTATTTAGTAC-ACTATCGGGTATGTAATATTAGCTTATTTGA-TTCATTTAG-T
1 GAATGTAAAATTATTTAGTACAAC-ATCGGGTATATAATATTAGCTTATTT-ATTTCATTTAGCT
94057355 TAGAAGGTAAAATTTTGCTATTTGGTTGATG
64 T-GAAGGTAAAATTTTGCTATTTGGTTGATG
* * *
94057386 GAATGTAAGATTATTTAGTACAACATCGGGTATATAATATTATCTTATTTATTTCATTTTGCTTG
1 GAATGTAAAATTATTTAGTACAACATCGGGTATATAATATTAGCTTATTTATTTCATTTAGCTTG
*
94057451 AGGGTAAAATTTT
66 AAGGTAAAATTTT
94057464 TGATAAATTG
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
92 1 0.01
93 65 0.93
94 4 0.06
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.44
Consensus pattern (93 bp):
GAATGTAAAATTATTTAGTACAACATCGGGTATATAATATTAGCTTATTTATTTCATTTAGCTTG
AAGGTAAAATTTTGCTATTTGGTTGATG
Found at i:94059299 original size:22 final size:22
Alignment explanation
Indices: 94059271--94059315 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
94059261 GAATGTAAGA
94059271 TTACCTCTACCAATAAAATTAC
1 TTACCTCTACCAATAAAATTAC
94059293 TTACCTCTACCAATAAAATTAC
1 TTACCTCTACCAATAAAATTAC
94059315 T
1 T
94059316 GGAATGAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (22 bp):
TTACCTCTACCAATAAAATTAC
Found at i:94070523 original size:36 final size:36
Alignment explanation
Indices: 94070483--94070555 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
94070473 AATTTTTTTA
94070483 TTGATTTTGATATATTCACATATATTTTTTTCATAT
1 TTGATTTTGATATATTCACATATATTTTTTTCATAT
*
94070519 TTGATTTTGATATATTCACGTATATTTTTTTCATAT
1 TTGATTTTGATATATTCACATATATTTTTTTCATAT
94070555 T
1 T
94070556 CATTTTATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.26, C:0.08, G:0.07, T:0.59
Consensus pattern (36 bp):
TTGATTTTGATATATTCACATATATTTTTTTCATAT
Found at i:94071434 original size:18 final size:17
Alignment explanation
Indices: 94071391--94071436 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
94071381 CCGTTATGTC
94071391 CGCGACCGCGA-C-AAA
1 CGCGACCGCGACCGAAA
*
94071406 CACGA-CGCGACCGAAAA
1 CGCGACCGCGACCG-AAA
94071423 CGCGACCGCGACCG
1 CGCGACCGCGACCG
94071437 CAATTTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 5 0.20
15 5 0.20
17 7 0.28
18 8 0.32
ACGTcount: A:0.30, C:0.41, G:0.28, T:0.00
Consensus pattern (17 bp):
CGCGACCGCGACCGAAA
Found at i:94074722 original size:23 final size:23
Alignment explanation
Indices: 94074640--94074726 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 23
94074630 CCTAATCAGT
94074640 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
**
94074662 A-ACGACACA-CGAGATGCCTG--
1 ATACGACACATAAAG-TGCCTGAA
** *
94074682 ATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
94074705 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
94074727 TCGATAAAGC
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
20 3 0.06
21 27 0.53
22 2 0.04
23 19 0.37
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.15
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:94075123 original size:15 final size:15
Alignment explanation
Indices: 94075098--94075155 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
94075088 TCATATATAT
94075098 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
94075114 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
94075129 AATAATTTCAATCAA
1 TATAAATTCAATCAA
*
94075144 TAAAAATTCAAT
1 TATAAATTCAAT
94075156 AAATTCATCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 33 0.89
16 4 0.11
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:94076434 original size:5 final size:5
Alignment explanation
Indices: 94076426--94076457 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
94076416 TCTTTAGTTT
*
94076426 ATATA ATATA ATATA AGATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
94076458 TAAAACATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:94080402 original size:15 final size:16
Alignment explanation
Indices: 94080382--94080411 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94080372 TTTCATTTTT
94080382 ATATAT-AAAAATATA
1 ATATATCAAAAATATA
94080397 ATATATCAAAAATAT
1 ATATATCAAAAATAT
94080412 TAAATAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
ATATATCAAAAATATA
Found at i:94085782 original size:5 final size:5
Alignment explanation
Indices: 94085772--94085812 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
94085762 TATAATTAAA
94085772 AAATT AAATT AAATT AAATT AAATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT AAATT AAATT AAATT AAATT AAATT A
94085813 GCTCGACTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AAATT
Found at i:94104906 original size:24 final size:25
Alignment explanation
Indices: 94104868--94104919 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
94104858 ACACATTAGC
94104868 AAACAAAAATATATAAATAT-AAAT
1 AAACAAAAATATATAAATATAAAAT
* * *
94104892 AAACAAATATTTATATATATAAAAT
1 AAACAAAAATATATAAATATAAAAT
94104917 AAA
1 AAA
94104920 TTGAATTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (25 bp):
AAACAAAAATATATAAATATAAAAT
Found at i:94106316 original size:10 final size:10
Alignment explanation
Indices: 94106303--94106346 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
94106293 AGAAATATTT
94106303 AAAATTCATA
1 AAAATTCATA
94106313 AAAATT-ATA
1 AAAATTCATA
*
94106322 AAAATTTAATA
1 AAAA-TTCATA
*
94106333 AAAATTCACA
1 AAAATTCATA
94106343 AAAA
1 AAAA
94106347 ATAGCTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 7 0.23
10 16 0.53
11 7 0.23
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAATTCATA
Found at i:94106317 original size:19 final size:20
Alignment explanation
Indices: 94106275--94106317 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
94106265 TCATGTCAAC
*
94106275 AAATAATTTAAAATATATAG
1 AAATAATTTAAAATATATAA
94106295 AAAT-ATTTAAAAT-TCATAA
1 AAATAATTTAAAATAT-ATAA
94106314 AAAT
1 AAAT
94106318 TATAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 16 0.76
20 4 0.19
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (20 bp):
AAATAATTTAAAATATATAA
Found at i:94108708 original size:48 final size:42
Alignment explanation
Indices: 94108617--94108697 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
94108607 CAAATTGACG
94108617 GAGTTAACTAAACTGAGCTAAAACTAAAAGTAAGAACTATCC
1 GAGTTAACTAAACTGAGCTAAAACTAAAAGTAAGAACTATCC
* *
94108659 GAGTTAACTAAACTGTGCTAAAACTAAAAGTACGAACTA
1 GAGTTAACTAAACTGAGCTAAAACTAAAAGTAAGAACTA
94108698 CCCAATTCCG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.47, C:0.16, G:0.15, T:0.22
Consensus pattern (42 bp):
GAGTTAACTAAACTGAGCTAAAACTAAAAGTAAGAACTATCC
Found at i:94109677 original size:23 final size:22
Alignment explanation
Indices: 94109658--94109717 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 22
94109648 TATATGTTGA
94109658 TGAACATATTCGTTTAATGTTTG
1 TGAAC-TATTCGTTTAATGTTTG
94109681 TGAAC---TCGTTTAATGTTTG
1 TGAACTATTCGTTTAATGTTTG
*
94109700 TGAACGTATTCATTTAAT
1 TGAAC-TATTCGTTTAAT
94109718 TTAAATGAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
19 19 0.59
23 13 0.41
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.47
Consensus pattern (22 bp):
TGAACTATTCGTTTAATGTTTG
Done.