Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 286 of 343
Found at i:94609633 original size:22 final size:21
Alignment explanation
Indices: 94609590--94609655 Score: 86
Period size: 21 Copynumber: 3.2 Consensus size: 21
94609580 CTTTTATTTC
94609590 AAAAAAT-AAA-AAAAAG-GCA
1 AAAAAATAAAAGAAAAAGAG-A
94609609 AAAAAATAAAAGAAAAAGAGA
1 AAAAAATAAAAGAAAAAGAGA
94609630 AAAAAATAAAAAGAAAAA-AGA
1 AAAAAAT-AAAAGAAAAAGAGA
94609651 AAAAA
1 AAAAA
94609656 TGGAGAGGCC
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.16
20 3 0.07
21 22 0.51
22 11 0.26
ACGTcount: A:0.83, C:0.02, G:0.11, T:0.05
Consensus pattern (21 bp):
AAAAAATAAAAGAAAAAGAGA
Found at i:94609635 original size:16 final size:15
Alignment explanation
Indices: 94609591--94609648 Score: 55
Period size: 16 Copynumber: 3.8 Consensus size: 15
94609581 TTTTATTTCA
*
94609591 AAAAATAAAAAAAAGG
1 AAAAAGAAAAAAAA-G
* *
94609607 CAAAA-AAATAAAAG
1 AAAAAGAAAAAAAAG
*
94609621 AAAAAGAGAAAAAAAT
1 AAAAAGA-AAAAAAAG
94609637 AAAAAGAAAAAA
1 AAAAAGAAAAAA
94609649 GAAAAAATGG
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
14 5 0.14
15 13 0.37
16 17 0.49
ACGTcount: A:0.83, C:0.02, G:0.10, T:0.05
Consensus pattern (15 bp):
AAAAAGAAAAAAAAG
Found at i:94611201 original size:207 final size:207
Alignment explanation
Indices: 94610845--94612384 Score: 2650
Period size: 207 Copynumber: 7.4 Consensus size: 207
94610835 CGACGGAGAG
* * * *
94610845 CAAATCGAAGACATATCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* * * *
94610910 GCATCTCTATATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGGGTAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
94610975 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATTCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
94611040 GCTTATAAGGAA
196 GCTTACAAGGAA
* *
94611052 TAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGCCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* ** *
94611117 GCATCTCTGTATTGTTAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCCACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
94611182 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGC
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
94611247 GCTTACAAGGAA
196 GCTTACAAGGAA
*
94611259 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGAAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
*
94611324 GCATCTCTGTATTGTTAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
94611389 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
94611454 GCTTACAAGGAA
196 GCTTACAAGGAA
* *
94611466 CAAGTCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
94611531 GCATCTTTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
94611596 CATAGCAGATCTGGCCTTTAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCATTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
94611661 GCTTACAAGGAA
196 GCTTACAAGGAA
*
94611673 CAAATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
94611738 GCATCTCTGTATTGTCAGTGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
94611803 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
94611868 GCTTACAAGGAA
196 GCTTACAAGGAA
* *
94611880 TAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTTTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
94611945 GCATCTCTATATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
94612010 CATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
94612075 GCTTACAAGGAA
196 GCTTACAAGGAA
*
94612087 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTATGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
*
94612152 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGACAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* ** * * *
94612217 TATAGCAGATCTAACCTTCAGATGATTAGACTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
94612281 GCTTACAAGGAG
196 GCTTACAAGGAA
* * * *
94612293 CAAATCGAAGACATAGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATATAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
*
94612358 GCATCTCTGTATTGTCAGGGAACAAAT
66 GCATCTCTGTATTGTCAGAGAACAAAT
94612385 TGAAGAAGCA
Statistics
Matches: 1268, Mismatches: 65, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
206 123 0.10
207 1145 0.90
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAA
Found at i:94612845 original size:35 final size:35
Alignment explanation
Indices: 94612783--94612935 Score: 261
Period size: 35 Copynumber: 4.3 Consensus size: 35
94612773 CAATGATATG
*
94612783 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
94612819 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
94612854 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
94612889 CAATCTTAGATATGATTACAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
94612926 CAATCTTAGA
1 CAATCTTAGA
94612936 AGATATGATT
Statistics
Matches: 113, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
35 85 0.75
36 15 0.13
37 13 0.12
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:94612944 original size:22 final size:18
Alignment explanation
Indices: 94612783--94612935 Score: 231
Period size: 18 Copynumber: 8.6 Consensus size: 18
94612773 CAATGATATG
* *
94612783 CAATCTTAGATGTGATATG
1 CAATCTTAGATATGAT-TA
94612802 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
94612819 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
94612837 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
94612854 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
94612872 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
94612889 CAATCTTAGATATGATTA
1 CAATCTTAGATATGATTA
94612907 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
94612926 CAATCTTAGA
1 CAATCTTAGA
94612936 AGATATGATT
Statistics
Matches: 124, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
17 48 0.39
18 50 0.40
19 26 0.21
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:94629015 original size:23 final size:24
Alignment explanation
Indices: 94628987--94629033 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
94628977 AAACTTCAAA
94628987 ATATCT-AAATATTCAACAATTTC
1 ATATCTAAAATATTCAACAATTTC
* *
94629010 ATATCTCAAAATCTTTAACAATTT
1 ATATCT-AAAATATTCAACAATTT
94629034 TAAAAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
25 14 0.70
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (24 bp):
ATATCTAAAATATTCAACAATTTC
Found at i:94629840 original size:14 final size:14
Alignment explanation
Indices: 94629821--94629849 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
94629811 CCACCAAAGT
94629821 GTCCCCCACTCGAA
1 GTCCCCCACTCGAA
94629835 GTCCCCCACTCGAA
1 GTCCCCCACTCGAA
94629849 G
1 G
94629850 ATGAATGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.48, G:0.17, T:0.14
Consensus pattern (14 bp):
GTCCCCCACTCGAA
Found at i:94638826 original size:21 final size:20
Alignment explanation
Indices: 94638786--94638836 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
94638776 CCTTTGCTTG
**
94638786 AGTATCGATATTTGGGGATAA
1 AGTATCGATATTTCAGGAT-A
*
94638807 AGTATCGATATTTCATGATA
1 AGTATCGATATTTCAGGATA
*
94638827 AGTACCGATA
1 AGTATCGATA
94638837 ATTTTTGAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
AGTATCGATATTTCAGGATA
Found at i:94642541 original size:43 final size:43
Alignment explanation
Indices: 94642478--94642559 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
94642468 ACAAGGCAAA
*
94642478 TGTAGTTGTTGATGCCTTAAGTAGAAAGCAAATGGCAGACGAG
1 TGTAGTTGCTGATGCCTTAAGTAGAAAGCAAATGGCAGACGAG
* * *
94642521 TGTAGTTGCTGATGCTTTAAGTAGAGAGTAAATGGCAGA
1 TGTAGTTGCTGATGCCTTAAGTAGAAAGCAAATGGCAGA
94642560 GTTAAGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (43 bp):
TGTAGTTGCTGATGCCTTAAGTAGAAAGCAAATGGCAGACGAG
Found at i:94649017 original size:43 final size:43
Alignment explanation
Indices: 94648956--94649079 Score: 187
Period size: 43 Copynumber: 2.9 Consensus size: 43
94648946 GGCATTTGTG
*
94648956 GACCTTTAGCGGCGCTTTTTCTACAAACGCCGCTAAAGATCAA
1 GACCTTTAGCGGCGCTTTTTCTACAAACGCCGCTAAAAATCAA
* *
94648999 GACCTTTAGCGGCGCTTTTTCTACAAACGCTGCTAAAAATCAT
1 GACCTTTAGCGGCGCTTTTTCTACAAACGCCGCTAAAAATCAA
* *
94649042 GACCTTTAACGGCGC-TTTTCTCAAAAACGCCGCTAAAA
1 GACCTTTAGCGGCGCTTTTTCT-ACAAACGCCGCTAAAA
94649080 GTCATGAAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
42 6 0.08
43 68 0.92
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (43 bp):
GACCTTTAGCGGCGCTTTTTCTACAAACGCCGCTAAAAATCAA
Found at i:94649311 original size:19 final size:21
Alignment explanation
Indices: 94649282--94649323 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
94649272 AAGTTATCTT
94649282 AAATATTAAAAT-AAAAATAA
1 AAATATTAAAATCAAAAATAA
*
94649302 AAAT-TTAAAATCAAAACTAA
1 AAATATTAAAATCAAAAATAA
94649322 AA
1 AA
94649324 TAAATAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (21 bp):
AAATATTAAAATCAAAAATAA
Found at i:94653440 original size:18 final size:19
Alignment explanation
Indices: 94653403--94653441 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
94653393 AAATCATATT
94653403 TATTATTTTCATATAAAAA
1 TATTATTTTCATATAAAAA
*
94653422 TATTATTTTGATA-AAAAA
1 TATTATTTTCATATAAAAA
94653440 TA
1 TA
94653442 AAAAAAGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TATTATTTTCATATAAAAA
Found at i:94654573 original size:40 final size:40
Alignment explanation
Indices: 94654472--94654607 Score: 193
Period size: 41 Copynumber: 3.4 Consensus size: 40
94654462 TATATAACTC
*
94654472 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GTT
94654513 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTT
* * * *
94654553 TTTAGCGGCGTTTTAACAAAAAACGCC-CATATTGCTCAGTT
1 TTTAGCGGCGTTTT-ACCAAAAGCGCCGC-TAATGCTCTGTT
94654594 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
94654608 TGTTAAAAAG
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
40 17 0.19
41 71 0.81
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (40 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTT
Found at i:94654616 original size:41 final size:40
Alignment explanation
Indices: 94654472--94654638 Score: 165
Period size: 41 Copynumber: 4.1 Consensus size: 40
94654462 TATATAACTC
* ** * *
94654472 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTAACAAAAAAGCCGCTATTGCTCT-GTT
* ** *
94654513 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTT
1 TTTAGCGGCGTTTTAACAAAAAAGCCGCTATTGCTCTGTT
*
94654553 TTTAGCGGCGTTTTAACAAAAAACGCC-CATATTGCTCAGTT
1 TTTAGCGGCGTTTTAACAAAAAA-GCCGC-TATTGCTCTGTT
****
94654594 TTTAGCGGCGTTTTTGTTAAAAAGCCGCTATTGCTCTGTGT
1 TTTAGCGGCGTTTTAACAAAAAAGCCGCTATTGCTCTGT-T
94654635 TTTA
1 TTTA
94654639 CAATTTTTGC
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
40 36 0.32
41 75 0.68
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (40 bp):
TTTAGCGGCGTTTTAACAAAAAAGCCGCTATTGCTCTGTT
Found at i:94656216 original size:35 final size:35
Alignment explanation
Indices: 94656171--94656248 Score: 149
Period size: 35 Copynumber: 2.3 Consensus size: 35
94656161 GATATAAACC
94656171 TTCAT-GCATGTCTAATCTCAAAAGAAACTAAGTT
1 TTCATGGCATGTCTAATCTCAAAAGAAACTAAGTT
94656205 TTCATGGCATGTCTAATCTCAAAAGAAACTAAGTT
1 TTCATGGCATGTCTAATCTCAAAAGAAACTAAGTT
94656240 TTCATGGCA
1 TTCATGGCA
94656249 AACATTACTA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
34 5 0.12
35 38 0.88
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (35 bp):
TTCATGGCATGTCTAATCTCAAAAGAAACTAAGTT
Found at i:94665355 original size:43 final size:43
Alignment explanation
Indices: 94665297--94665482 Score: 221
Period size: 43 Copynumber: 4.3 Consensus size: 43
94665287 CGTTTTTAAG
* *
94665297 AAAAAACGCCGCTAAAGGCCAGGACATTTAGCGGCGCTTTTAT
1 AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTAT
* * * *
94665340 AAAAAACGCCACTAAAAACCAAGACCTTTAGCGGCGCTTCTA-
1 AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTAT
* *
94665382 AAAAAACGCCGTTAAAGACCAGAACCTTTAGCGGCGCTTTTAT
1 AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTAT
* * * * * *
94665425 AAAAAACGCCGCTACAGACCTGTACTTTTAGCGGCACTTTTTT
1 AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTAT
**
94665468 AAAAATTGCCGCTAA
1 AAAAAACGCCGCTAA
94665483 TTTGCCCAGT
Statistics
Matches: 120, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
42 36 0.30
43 84 0.70
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTAT
Found at i:94666376 original size:18 final size:18
Alignment explanation
Indices: 94666344--94666381 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
94666334 TACAATATAG
94666344 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
94666363 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
94666380 TA
1 TA
94666382 CTTGACAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:94667778 original size:27 final size:26
Alignment explanation
Indices: 94667738--94667850 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
94667728 CAGCATGGCT
* *
94667738 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
*
94667764 ACCAGATATAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
94667792 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* * *
94667819 ACCAGATCAGAGAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
*
94667846 CCCAG
1 ACCAG
94667851 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:94667839 original size:54 final size:54
Alignment explanation
Indices: 94667738--94667850 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
94667728 CAGCATGGCT
* * *
94667738 ACCAGAACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATAATGTGACAGAGCCACCAGATACAGAGAATCGTGGCAGAGCC
* * *
94667792 ACCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGAGAATTGTGGCATAGCC
1 ACCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGAGAATCGTGGCAGAGCC
*
94667846 CCCAG
1 ACCAG
94667851 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (54 bp):
ACCAGAACAGATAATGTGACAGAGCCACCAGATACAGAGAATCGTGGCAGAGCC
Found at i:94668156 original size:21 final size:20
Alignment explanation
Indices: 94668114--94668156 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
94668104 ATTGAGCCCG
*
94668114 TTGGCCCATGAACCCAATTT
1 TTGGCCCATGAACCCAAGTT
* *
94668134 TTGGCCCATTAAGTCCAAGTT
1 TTGGCCCATGAA-CCCAAGTT
94668155 TT
1 TT
94668157 CAAAAATACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (20 bp):
TTGGCCCATGAACCCAAGTT
Found at i:94673005 original size:37 final size:37
Alignment explanation
Indices: 94672955--94673029 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
94672945 TATATAAGCC
94672955 ATTTTCGCATGGCTATCCAAATTTGTACAATACTGAA
1 ATTTTCGCATGGCTATCCAAATTTGTACAATACTGAA
94672992 ATTTTCGCATGGCTATCCAAATTTGTACAATACTGAA
1 ATTTTCGCATGGCTATCCAAATTTGTACAATACTGAA
94673029 A
1 A
94673030 GGTACATGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (37 bp):
ATTTTCGCATGGCTATCCAAATTTGTACAATACTGAA
Found at i:94680854 original size:12 final size:12
Alignment explanation
Indices: 94680819--94680862 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
94680809 CTCTCGAGCC
* *
94680819 CTTCCTCGGCCA
1 CTTCCACGGCCT
*
94680831 CGTCCACGGCCT
1 CTTCCACGGCCT
94680843 CTTCCACGGCCT
1 CTTCCACGGCCT
94680855 CTTCCACG
1 CTTCCACG
94680863 AGTGGCTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.09, C:0.50, G:0.18, T:0.23
Consensus pattern (12 bp):
CTTCCACGGCCT
Found at i:94682217 original size:27 final size:27
Alignment explanation
Indices: 94682186--94682290 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
94682176 CTGCCAGAAT
* *
94682186 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
* *
94682213 AGATAATCGTGGCAGAGCCACTAGA-AT
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
94682240 AGATATATGTGGTAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
94682267 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
94682291 GACGCTTCCT
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 1 0.02
27 48 0.74
28 16 0.25
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:94682270 original size:54 final size:54
Alignment explanation
Indices: 94682181--94682287 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
94682171 CATGGCTGCC
*
94682181 AGAATAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACT
1 AGAATAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
** * *
94682235 AGAATAGATATATGTGGTAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCAC
1 AGAATAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCAC
94682288 CAGGACGCTT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 30 0.64
55 17 0.36
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
AGAATAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
Found at i:94683735 original size:24 final size:24
Alignment explanation
Indices: 94683708--94683754 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
94683698 CTAGATTTCC
**
94683708 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
94683732 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
94683755 CTCCTGTCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:94693997 original size:15 final size:15
Alignment explanation
Indices: 94693977--94694008 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
94693967 AAATAATAAT
*
94693977 TTATATATATTTATC
1 TTATATACATTTATC
94693992 TTATATACATTTATC
1 TTATATACATTTATC
94694007 TT
1 TT
94694009 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:94695081 original size:39 final size:41
Alignment explanation
Indices: 94694945--94695121 Score: 254
Period size: 41 Copynumber: 4.4 Consensus size: 41
94694935 GTTATATGAC
*
94694945 TTTTAGCAGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
*
94694986 TTTTAGCAGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
* *
94695027 TTTTAGCGGCGTTTTACCAAAAGCACCGCTAATGCTCT-G-
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
* * *
94695066 TTTTAGCGGTGTTTTACCAAAAGTG-CAGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCA-CTAATGCTCTGGT
94695106 TTTTAGCGGCGTTTTA
1 TTTTAGCGGCGTTTTA
94695122 GTAAAAAACG
Statistics
Matches: 125, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.26
40 16 0.13
41 76 0.61
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
Found at i:94695143 original size:80 final size:80
Alignment explanation
Indices: 94694945--94695146 Score: 219
Period size: 80 Copynumber: 2.5 Consensus size: 80
94694935 GTTATATGAC
* * * * *
94694945 TTTTAGCAGCGTTTTACCAAAAGCGCCACTAATGCTCTGGTTTTTAGCAGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTTACAAAAAACACCGCTAATGCTCT-G-TTTTAGCAGCGTTTTACCAAAAGC
94695010 GCCACTAATGCTCTGGT
64 GCCACTAATGCTCTGGT
* * * * *
94695027 TTTTAGCGGCGTTTTACCAAAAGCACCGCTAATGCTCTGTTTTAGCGGTGTTTTACCAAAAGTG-
1 TTTTAGCGGCGTTTTACAAAAAACACCGCTAATGCTCTGTTTTAGCAGCGTTTTACCAAAAGCGC
*
94695091 CAGCTATTGCTCT-GT
66 CA-CTAATGCTCTGGT
* * **
94695106 TTTTAGCGGCGTTTTAGTAAAAAACGCCGCTGTTGCTCTGT
1 TTTTAGCGGCGTTTTA-CAAAAAACACCGCTAATGCTCTGT
94695147 ATTTTAAAAT
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
79 20 0.19
80 49 0.47
81 1 0.01
82 35 0.33
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.34
Consensus pattern (80 bp):
TTTTAGCGGCGTTTTACAAAAAACACCGCTAATGCTCTGTTTTAGCAGCGTTTTACCAAAAGCGC
CACTAATGCTCTGGT
Found at i:94697151 original size:24 final size:24
Alignment explanation
Indices: 94697116--94697162 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
94697106 CTGTCAGGAG
* **
94697116 AGGATTTTGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
94697140 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
94697163 GGAAATCTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.38, T:0.26
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:94698608 original size:27 final size:26
Alignment explanation
Indices: 94698578--94698682 Score: 102
Period size: 27 Copynumber: 3.9 Consensus size: 26
94698568 AGGAAGCGTC
* *
94698578 CTGGTGGCTATTCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
94698605 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
94698632 CTGGTGGTTCGGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
94698660 CTGGTGACCCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
94698683 ATTTTGGCAG
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
26 2 0.03
27 48 0.75
28 14 0.22
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:94704983 original size:24 final size:24
Alignment explanation
Indices: 94704942--94704988 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
94704932 CTGTCAGGAG
* **
94704942 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAAGAGCAGATAAGGGAT
94704966 AGGATTTAAGAGCAGATAAGGGA
1 AGGATTTAAGAGCAGATAAGGGA
94704989 GGAAATCCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.36, T:0.23
Consensus pattern (24 bp):
AGGATTTAAGAGCAGATAAGGGAT
Found at i:94706509 original size:27 final size:27
Alignment explanation
Indices: 94706404--94706509 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
94706394 GGAAGCGTCT
94706404 TGGTGGC-CATGCCACAATTATCTG-ATC
1 TGGTGGCTC-TGCCAC-ATTATCTGTATC
94706431 TGGTGGCTCTGCCACATATATCTGT-TC
1 TGGTGGCTCTGCCACAT-TATCTGTATC
* *
94706458 TGGTGGTTCGGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCAC-ATTATCTGTATC
* *
94706486 TGGTGACTCTGTCACATTATCTGT
1 TGGTGGCTCTGCCACATTATCTGT
94706510 TTTAGCAGCC
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
26 2 0.03
27 50 0.74
28 16 0.24
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.36
Consensus pattern (27 bp):
TGGTGGCTCTGCCACATTATCTGTATC
Found at i:94708186 original size:55 final size:56
Alignment explanation
Indices: 94708121--94708235 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 56
94708111 AGCATGGCTG
*
94708121 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGAT-ATTCTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATT-TGTGGCA-TAGCCA
* * *
94708177 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
94708232 CCAG
1 CCAG
94708236 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
54 1 0.02
55 26 0.50
56 25 0.48
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:94708198 original size:27 final size:27
Alignment explanation
Indices: 94708146--94708235 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
94708136 GTGACAGAGT
*
94708146 CACCAGATACAGATATTCTGTGGCAGTGC
1 CACCAGA-ACAGATA-TATGTGGCAGTGC
*
94708175 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATATGTGGCAGTGC
*
94708202 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATATGTGGCAGT-GC
94708230 CACCAG
1 CACCAG
94708236 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATATGTGGCAGTGC
Found at i:94708231 original size:28 final size:26
Alignment explanation
Indices: 94708146--94708235 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 26
94708136 GTGACAGAGT
94708146 CACCAGATACAGATATTCTGTGGCAGTGC
1 CACCAGA-ACAGATATT-TGTGGCA-TGC
* *
94708175 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCA-TGC
94708202 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGAT-ATTTGTGGCAT-GC
94708230 CACCAG
1 CACCAG
94708236 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (26 bp):
CACCAGAACAGATATTTGTGGCATGC
Found at i:94708392 original size:27 final size:28
Alignment explanation
Indices: 94708339--94708429 Score: 132
Period size: 27 Copynumber: 3.3 Consensus size: 28
94708329 AAATTAACCC
* * * *
94708339 TAGGGGTATAAAGGTCATTTTGTATACA
1 TAGGGGTATTATGGTAATTTTGCATACA
94708367 TAGGGGTATTATGGT-ATTTTGCATACA
1 TAGGGGTATTATGGTAATTTTGCATACA
94708394 TAGGGGTA-TATGGTAATTTTGCATACA
1 TAGGGGTATTATGGTAATTTTGCATACA
94708421 TAGGGGTAT
1 TAGGGGTAT
94708430 AATAGTACAT
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
26 6 0.10
27 39 0.67
28 13 0.22
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.37
Consensus pattern (28 bp):
TAGGGGTATTATGGTAATTTTGCATACA
Found at i:94716109 original size:27 final size:27
Alignment explanation
Indices: 94716057--94716146 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
94716047 GTGATAGAGT
94716057 CACCAGATACAGATATTTTGTGGCAGTAC
1 CACCAGA-ACAGATA-TTTGTGGCAGTAC
* **
94716086 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTAC
*
94716113 CACTAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGTA-C
94716141 CACCAG
1 CACCAG
94716147 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTAC
Found at i:94716142 original size:28 final size:28
Alignment explanation
Indices: 94716057--94716146 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
94716047 GTGATAGAGT
*
94716057 CACCAGATACAGATATTTTGTGGCAGTA-C
1 CACCAGA-ACAGATAATTTGTGGCA-TAGC
* **
94716086 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCATAGC
*
94716113 CACTAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCATAGC
94716141 CACCAG
1 CACCAG
94716147 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 21 0.42
28 22 0.44
29 7 0.14
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCATAGC
Found at i:94723626 original size:7 final size:7
Alignment explanation
Indices: 94723616--94723661 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
94723606 TGAATGAGAA
94723616 ATGAGGG
1 ATGAGGG
*
94723623 ATGAGTG
1 ATGAGGG
*
94723630 ATGAGTG
1 ATGAGGG
94723637 ATGAGGG
1 ATGAGGG
*
94723644 GTGAGGG
1 ATGAGGG
*
94723651 ATGAAGG
1 ATGAGGG
94723658 ATGA
1 ATGA
94723662 TTAGAAATGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.30, C:0.00, G:0.50, T:0.20
Consensus pattern (7 bp):
ATGAGGG
Found at i:94723634 original size:21 final size:21
Alignment explanation
Indices: 94723609--94723654 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
94723599 AAGAGAATGA
*
94723609 ATGAGAAATGAGGGATGAGTG
1 ATGAGAAATGAGGGATGAGGG
** *
94723630 ATGAGTGATGAGGGGTGAGGG
1 ATGAGAAATGAGGGATGAGGG
94723651 ATGA
1 ATGA
94723655 AGGATGATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.48, T:0.20
Consensus pattern (21 bp):
ATGAGAAATGAGGGATGAGGG
Found at i:94724802 original size:14 final size:15
Alignment explanation
Indices: 94724783--94724839 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
94724773 AATCTTTAAG
94724783 GATATG-CAATCTTA
1 GATATGACAATCTTA
94724797 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
94724814 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
94724833 GATATGA
1 GATATGA
94724840 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:94724824 original size:36 final size:38
Alignment explanation
Indices: 94724783--94724861 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
94724773 AATCTTTAAG
94724783 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
94724819 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
94724859 GAT
1 GAT
94724862 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:94724830 original size:19 final size:19
Alignment explanation
Indices: 94724783--94724861 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
94724773 AATCTTTAAG
94724783 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
94724802 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
94724819 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
94724838 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
94724859 GAT
1 GAT
94724862 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:94731390 original size:23 final size:23
Alignment explanation
Indices: 94731364--94731439 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 23
94731354 TTTTAAGTTT
94731364 AATATATATATTATTAAATAATA
1 AATATATATATTATTAAATAATA
* * *
94731387 AATATCTTTATTATTTAATAATA
1 AATATATATATTATTAAATAATA
* * *
94731410 TATA-ATATATTATTATATTATA
1 AATATATATATTATTAAATAATA
*
94731432 TATATATA
1 AATATATA
94731440 GTAAAGTAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
22 17 0.40
23 26 0.60
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (23 bp):
AATATATATATTATTAAATAATA
Found at i:94732517 original size:21 final size:21
Alignment explanation
Indices: 94732493--94732562 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
94732483 TGAATTGTGT
*
94732493 ATTGATTGAAAAGTGGTTTGA
1 ATTGATTGAAAAGTGATTTGA
* * *
94732514 ATTGAATCGAAGTA-TGATTGTGT
1 ATTG-ATTGAA-AAGTGATT-TGA
*
94732537 ATTGATTGAAAAGTGCTTTGA
1 ATTGATTGAAAAGTGATTTGA
94732558 ATTGA
1 ATTGA
94732563 ATCGAAGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
21 12 0.32
22 18 0.49
23 7 0.19
ACGTcount: A:0.33, C:0.03, G:0.26, T:0.39
Consensus pattern (21 bp):
ATTGATTGAAAAGTGATTTGA
Found at i:94732536 original size:44 final size:44
Alignment explanation
Indices: 94732486--94732576 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
94732476 GAATATGTGA
*
94732486 ATTGTGTATTGATTGAAAAGTGGTTTGAATTGAATCGAAGTATG
1 ATTGTGTATTGATTGAAAAGTGCTTTGAATTGAATCGAAGTATG
94732530 ATTGTGTATTGATTGAAAAGTGCTTTGAATTGAATCGAAGTATG
1 ATTGTGTATTGATTGAAAAGTGCTTTGAATTGAATCGAAGTATG
94732574 ATT
1 ATT
94732577 ATATGTGAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.32, C:0.03, G:0.25, T:0.40
Consensus pattern (44 bp):
ATTGTGTATTGATTGAAAAGTGCTTTGAATTGAATCGAAGTATG
Found at i:94732845 original size:21 final size:21
Alignment explanation
Indices: 94732783--94732847 Score: 85
Period size: 21 Copynumber: 3.1 Consensus size: 21
94732773 GGCTTTGCCG
*
94732783 ATCAGGCACTTTATGTGTCGC
1 ATCAGGCACTTTATGTGTCGT
* **
94732804 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGT
*
94732825 TTCAGGCACTTTATGTGTCGT
1 ATCAGGCACTTTATGTGTCGT
94732846 AT
1 AT
94732848 ATTGCTTTTG
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (21 bp):
ATCAGGCACTTTATGTGTCGT
Found at i:94742623 original size:13 final size:13
Alignment explanation
Indices: 94742605--94742629 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94742595 TAAAATAAAA
94742605 GAAATAAAGAAAT
1 GAAATAAAGAAAT
94742618 GAAATAAAGAAA
1 GAAATAAAGAAA
94742630 AAGGAAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (13 bp):
GAAATAAAGAAAT
Found at i:94744922 original size:44 final size:45
Alignment explanation
Indices: 94744833--94744929 Score: 115
Period size: 44 Copynumber: 2.2 Consensus size: 45
94744823 AACGGCTCGT
* * * *
94744833 GATTACACGTTATAGTATGTGGCAACCATTGGCATGATAGTCCAA
1 GATTACACGTTATAGTATATGGCAACCATTGACATGACAGCCCAA
* * * *
94744878 GATTACACGTTGT-TTATATGGCAACCATTGACCTGACCGCCCAA
1 GATTACACGTTATAGTATATGGCAACCATTGACATGACAGCCCAA
94744922 GATTACAC
1 GATTACAC
94744930 ATATATGTAG
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 32 0.73
45 12 0.27
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (45 bp):
GATTACACGTTATAGTATATGGCAACCATTGACATGACAGCCCAA
Found at i:94747186 original size:127 final size:127
Alignment explanation
Indices: 94747036--94747293 Score: 516
Period size: 127 Copynumber: 2.0 Consensus size: 127
94747026 ATATCTTGCT
94747036 ATGATTGTATTGAATTTAATGTTAATGGAAATTTGATAGACTATGATATTTTAAATGAAATGAGT
1 ATGATTGTATTGAATTTAATGTTAATGGAAATTTGATAGACTATGATATTTTAAATGAAATGAGT
94747101 AAGTTTGTATAGAAATAAGGTGATATGTGATTTTGATTGTATGGATTTATGCTCAAATAAAA
66 AAGTTTGTATAGAAATAAGGTGATATGTGATTTTGATTGTATGGATTTATGCTCAAATAAAA
94747163 ATGATTGTATTGAATTTAATGTTAATGGAAATTTGATAGACTATGATATTTTAAATGAAATGAGT
1 ATGATTGTATTGAATTTAATGTTAATGGAAATTTGATAGACTATGATATTTTAAATGAAATGAGT
94747228 AAGTTTGTATAGAAATAAGGTGATATGTGATTTTGATTGTATGGATTTATGCTCAAATAAAA
66 AAGTTTGTATAGAAATAAGGTGATATGTGATTTTGATTGTATGGATTTATGCTCAAATAAAA
94747290 ATGA
1 ATGA
94747294 AAATGTGTCG
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 131 1.00
ACGTcount: A:0.38, C:0.02, G:0.20, T:0.40
Consensus pattern (127 bp):
ATGATTGTATTGAATTTAATGTTAATGGAAATTTGATAGACTATGATATTTTAAATGAAATGAGT
AAGTTTGTATAGAAATAAGGTGATATGTGATTTTGATTGTATGGATTTATGCTCAAATAAAA
Found at i:94751005 original size:61 final size:61
Alignment explanation
Indices: 94750938--94751074 Score: 167
Period size: 60 Copynumber: 2.3 Consensus size: 61
94750928 CAAAGTTAAC
* * *
94750938 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATATCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
94750999 TGGGCC-TAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
94751059 TGGGCCTT-GCCCATAT
1 TGGGCCTTAGCCCATAT
94751075 TGACACAGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
60 51 0.76
61 14 0.21
62 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (61 bp):
TGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:94751717 original size:8 final size:8
Alignment explanation
Indices: 94751704--94751741 Score: 76
Period size: 8 Copynumber: 4.8 Consensus size: 8
94751694 ACAAATGCCA
94751704 GCTTTTCG
1 GCTTTTCG
94751712 GCTTTTCG
1 GCTTTTCG
94751720 GCTTTTCG
1 GCTTTTCG
94751728 GCTTTTCG
1 GCTTTTCG
94751736 GCTTTT
1 GCTTTT
94751742 GCCGATCTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.00, C:0.24, G:0.24, T:0.53
Consensus pattern (8 bp):
GCTTTTCG
Found at i:94754783 original size:26 final size:24
Alignment explanation
Indices: 94754743--94754802 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
94754733 TTATTTCATT
* * *
94754743 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
94754767 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
94754793 AAATAAATAT
1 AAATAAATAT
94754803 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:94754814 original size:22 final size:22
Alignment explanation
Indices: 94754773--94754831 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
94754763 ATAATAAATC
* *
94754773 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
94754793 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
94754815 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
94754832 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:94754908 original size:15 final size:16
Alignment explanation
Indices: 94754878--94754910 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
94754868 AAATAGTTAT
94754878 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
94754895 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
94754910 A
1 A
94754911 AATAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:94755255 original size:92 final size:92
Alignment explanation
Indices: 94755098--94755368 Score: 476
Period size: 92 Copynumber: 3.0 Consensus size: 92
94755088 GGGCCGGCCA
*
94755098 GCCCATGATCAGCTCTAGGTACACCCCCCGCGGGAGCCCTTCATGTGTCCTTTTTTATCTTTTTT
1 GCCCATGATCAGCTCTAGGTACACCCCCCGCGGGAGCCCTTCATGGGTCCTTTTTTATCTTTTTT
*
94755163 TTTTCTACTAGATATGTACACAGCCCG
66 TTTTCTAATAGATATGTACACAGCCCG
94755190 GCCCATGATCAGCTCTAGGTACACCCCCCGCGGGAGCCCTTCATGGGTCCTTTTTTATC-TTTTT
1 GCCCATGATCAGCTCTAGGTACACCCCCCGCGGGAGCCCTTCATGGGTCCTTTTTTATCTTTTTT
94755254 TTTTCTAATAGATATGTACACAGCCCG
66 TTTTCTAATAGATATGTACACAGCCCG
*
94755281 GCCCATGATCAGCTCTAGGTACA-CCCCCGCGGGAGCCC-TCATGGGTCCTTTTTTTATTTATTT
1 GCCCATGATCAGCTCTAGGTACACCCCCCGCGGGAGCCCTTCATGGGTCC-TTTTTTATCT-TTT
94755344 TTTTTTCTAATAGATATGTACACAG
64 TTTTTTCTAATAGATATGTACACAG
94755369 ACATGGGGCT
Statistics
Matches: 173, Mismatches: 3, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
89 10 0.06
90 23 0.13
91 54 0.31
92 86 0.50
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (92 bp):
GCCCATGATCAGCTCTAGGTACACCCCCCGCGGGAGCCCTTCATGGGTCCTTTTTTATCTTTTTT
TTTTCTAATAGATATGTACACAGCCCG
Found at i:94755892 original size:24 final size:24
Alignment explanation
Indices: 94755857--94755903 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
94755847 CTCTTCACTT
*
94755857 TCATATTTTTTATAATATATAAAA
1 TCATATTCTTTATAATATATAAAA
94755881 TCATATTCTTTATAATATATAAA
1 TCATATTCTTTATAATATATAAA
94755904 GTACATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (24 bp):
TCATATTCTTTATAATATATAAAA
Found at i:94762874 original size:71 final size:71
Alignment explanation
Indices: 94762733--94762895 Score: 218
Period size: 71 Copynumber: 2.3 Consensus size: 71
94762723 AACCAAAGTG
* * * *
94762733 CTACTGATACCTTGAAGATTTCTACCGAAACCAGTCAAGTTAGTAGCCAAAGTTCAACATCTCAT
1 CTACCGATACCTTGAAGACTTCTACCGAAACAAGTCAAGTTAGTAGCCAAAGTTCAACATCCCAT
*
94762798 GCACTT
66 ACACTT
* * * *
94762804 CTATCGATACCTTGAGGACTTCTATCGAAACAAGTCAAGTTAGTAGCCAAAGTTCAACATCCCCT
1 CTACCGATACCTTGAAGACTTCTACCGAAACAAGTCAAGTTAGTAGCCAAAGTTCAACATCCCAT
94762869 ACACTT
66 ACACTT
* *
94762875 TTACCGATACTTTGATAGACT
1 CTACCGATACCTTGA-AGACT
94762896 CTGCCTATGT
Statistics
Matches: 78, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
71 74 0.95
72 4 0.05
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (71 bp):
CTACCGATACCTTGAAGACTTCTACCGAAACAAGTCAAGTTAGTAGCCAAAGTTCAACATCCCAT
ACACTT
Found at i:94767745 original size:49 final size:49
Alignment explanation
Indices: 94767689--94767788 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
94767679 CAGTACATCA
94767689 TATACCACATACAAGTATTCTCACATATTACTTGTGATGGTCACTAAAC
1 TATACCACATACAAGTATTCTCACATATTACTTGTGATGGTCACTAAAC
**
94767738 TATACCACATACAAGTATTCTTGCATATTACTTGTGATGGTCACTAAAC
1 TATACCACATACAAGTATTCTCACATATTACTTGTGATGGTCACTAAAC
94767787 TA
1 TA
94767789 ACTATAAATA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (49 bp):
TATACCACATACAAGTATTCTCACATATTACTTGTGATGGTCACTAAAC
Found at i:94772359 original size:21 final size:20
Alignment explanation
Indices: 94772325--94772381 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
94772315 ATTTAAACAA
* *
94772325 AAATAAATAGAATAATAAATT
1 AAATAAA-ATAATAAGAAATT
*
94772346 AAATTAAATTAATAAAGAAATT
1 AAA-TAAAATAAT-AAGAAATT
94772368 AAATAAAATAATAA
1 AAATAAAATAATAA
94772382 AATAGTAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
20 2 0.07
21 14 0.47
22 14 0.47
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (20 bp):
AAATAAAATAATAAGAAATT
Found at i:94772778 original size:14 final size:14
Alignment explanation
Indices: 94772759--94772785 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
94772749 AATTGAGGGT
94772759 GTAGGGGCAATGGA
1 GTAGGGGCAATGGA
94772773 GTAGGGGCAATGG
1 GTAGGGGCAATGG
94772786 CGGTGGCCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.07, G:0.52, T:0.15
Consensus pattern (14 bp):
GTAGGGGCAATGGA
Found at i:94774306 original size:12 final size:12
Alignment explanation
Indices: 94774285--94774322 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
94774275 ATAAAAAACA
*
94774285 AAATAGATATAT
1 AAATAAATATAT
94774297 AAATAAATATAT
1 AAATAAATATAT
94774309 -AATAATATATAT
1 AAATAA-ATATAT
94774321 AA
1 AA
94774323 GAAAGATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 5 0.22
12 17 0.74
13 1 0.04
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (12 bp):
AAATAAATATAT
Found at i:94774334 original size:22 final size:21
Alignment explanation
Indices: 94774285--94774339 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
94774275 ATAAAAAACA
* *
94774285 AAATAGATATATAAATAAATAT
1 AAATA-ATATATAAAGAAAGAT
94774307 ATAATAATATATATAAGAAAGAT
1 A-AATAATATATA-AAGAAAGAT
*
94774330 AAATATTATA
1 AAATAATATA
94774340 AGGAATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
22 16 0.57
23 12 0.43
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (21 bp):
AAATAATATATAAAGAAAGAT
Found at i:94774469 original size:17 final size:19
Alignment explanation
Indices: 94774443--94774490 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
94774433 AATATTTTTC
*
94774443 ATATAGTAAAATA-A-ATA
1 ATATAATAAAATATATATA
*
94774460 ATATAATAAAAATATATATC
1 ATATAAT-AAAATATATATA
94774480 ATATAATAAAA
1 ATATAATAAAA
94774491 ATTTTGAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 6 0.23
18 6 0.23
19 5 0.19
20 9 0.35
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (19 bp):
ATATAATAAAATATATATA
Found at i:94783473 original size:12 final size:12
Alignment explanation
Indices: 94783452--94783489 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
94783442 ATAAAAAACA
*
94783452 AAATAGATATAT
1 AAATAAATATAT
94783464 AAATAAATATAT
1 AAATAAATATAT
94783476 -AATAATATATAT
1 AAATAA-ATATAT
94783488 AA
1 AA
94783490 GAAAGATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 5 0.22
12 17 0.74
13 1 0.04
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (12 bp):
AAATAAATATAT
Found at i:94783501 original size:22 final size:21
Alignment explanation
Indices: 94783452--94783506 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
94783442 ATAAAAAACA
* *
94783452 AAATAGATATATAAATAAATAT
1 AAATA-ATATATAAAGAAAGAT
94783474 ATAATAATATATATAAGAAAGAT
1 A-AATAATATATA-AAGAAAGAT
*
94783497 AAATATTATA
1 AAATAATATA
94783507 AGGAATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
22 16 0.57
23 12 0.43
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (21 bp):
AAATAATATATAAAGAAAGAT
Found at i:94783636 original size:17 final size:19
Alignment explanation
Indices: 94783610--94783657 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
94783600 AATATTTTTC
*
94783610 ATATAGTAAAATA-A-ATA
1 ATATAATAAAATATATATA
*
94783627 ATATAATAAAAATATATATC
1 ATATAAT-AAAATATATATA
94783647 ATATAATAAAA
1 ATATAATAAAA
94783658 ATTTTGAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 6 0.23
18 6 0.23
19 5 0.19
20 9 0.35
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (19 bp):
ATATAATAAAATATATATA
Found at i:94783767 original size:31 final size:31
Alignment explanation
Indices: 94783729--94783788 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
94783719 TATGATTGAT
94783729 TTTTATATAATAAAATAAATAATATACATGA
1 TTTTATATAATAAAATAAATAATATACATGA
94783760 TTTTATATAATAAAATAAATAATATACAT
1 TTTTATATAATAAAATAAATAATATACAT
94783789 ACATAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (31 bp):
TTTTATATAATAAAATAAATAATATACATGA
Found at i:94783880 original size:27 final size:27
Alignment explanation
Indices: 94783824--94783881 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
94783814 GAAGATGTAA
*
94783824 TATATAAAAAATGAAATATGAATACTAT
1 TATATAAAAAATGAAATAT-AATACCAT
94783852 TATATAAATAAA-GATAATAT-ATACCAT
1 TATATAAA-AAATGA-AATATAATACCAT
94783879 TAT
1 TAT
94783882 TAATATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 9 0.33
28 10 0.37
29 8 0.30
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.34
Consensus pattern (27 bp):
TATATAAAAAATGAAATATAATACCAT
Found at i:94783946 original size:21 final size:22
Alignment explanation
Indices: 94783910--94783951 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
94783900 ACAATTTACA
*
94783910 AATTTAATAAATAATAATATAT
1 AATTTAATAAAAAATAATATAT
94783932 AATTT-ATAAAAAATAATATA
1 AATTTAATAAAAAATAATATA
94783952 AGGAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
AATTTAATAAAAAATAATATAT
Found at i:94783964 original size:14 final size:13
Alignment explanation
Indices: 94783942--94783982 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
94783932 AATTTATAAA
94783942 AAATAATATAAGG
1 AAATAATATAAGG
**
94783955 AAATATATATAACA
1 AAATA-ATATAAGG
94783969 AAATAATATAAGG
1 AAATAATATAAGG
94783982 A
1 A
94783983 CGAAAATTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.24
Consensus pattern (13 bp):
AAATAATATAAGG
Found at i:94785134 original size:25 final size:25
Alignment explanation
Indices: 94785101--94785159 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
94785091 CTTCATGAGT
*
94785101 TTTGGGTCTTGTAAGGGTTT-TTGGG
1 TTTGGGTCTTGTAA-GGTTTATCGGG
94785126 TTTGGGTCTTGTAAGGTTTATCGGG
1 TTTGGGTCTTGTAAGGTTTATCGGG
94785151 TTTGGGTCT
1 TTTGGGTCT
94785160 GCTGTAGGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 5 0.16
25 27 0.84
ACGTcount: A:0.08, C:0.07, G:0.37, T:0.47
Consensus pattern (25 bp):
TTTGGGTCTTGTAAGGTTTATCGGG
Found at i:94800086 original size:14 final size:13
Alignment explanation
Indices: 94800067--94800114 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
94800057 TTAAAAGTTT
94800067 TTTATTTATTTATA
1 TTTATTTATTTA-A
*
94800081 TTTATTTA-ATAA
1 TTTATTTATTTAA
94800093 TTTATTTAATTTAA
1 TTTATTT-ATTTAA
*
94800107 TTGATTTA
1 TTTATTTA
94800115 AAATTTTTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 8 0.28
13 4 0.14
14 17 0.59
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (13 bp):
TTTATTTATTTAA
Found at i:94800096 original size:26 final size:25
Alignment explanation
Indices: 94800067--94800120 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
94800057 TTAAAAGTTT
*
94800067 TTTATTT-ATTTATATTTATTTAATAA
1 TTTATTTAATTTA-ATTGATTTAA-AA
94800093 TTTATTTAATTTAATTGATTTAAAA
1 TTTATTTAATTTAATTGATTTAAAA
94800118 TTT
1 TTT
94800121 TTGAAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.19
26 16 0.62
27 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (25 bp):
TTTATTTAATTTAATTGATTTAAAA
Found at i:94801953 original size:16 final size:16
Alignment explanation
Indices: 94801932--94801969 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
94801922 CTTGTAAATG
94801932 TTTTTTATTTTATTAA
1 TTTTTTATTTTATTAA
*
94801948 TTTTTTATTTTTTTAA
1 TTTTTTATTTTATTAA
94801964 TTTTTT
1 TTTTTT
94801970 TGATATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTTATTTTATTAA
Found at i:94801961 original size:8 final size:8
Alignment explanation
Indices: 94801932--94801981 Score: 55
Period size: 8 Copynumber: 6.0 Consensus size: 8
94801922 CTTGTAAATG
94801932 TTTTTTAT
1 TTTTTTAT
* *
94801940 TTTATTAA
1 TTTTTTAT
94801948 TTTTTTAT
1 TTTTTTAT
94801956 TTTTTTAAT
1 TTTTTT-AT
94801965 TTTTTTGAT
1 TTTTTT-AT
*
94801974 ATTTTTAT
1 TTTTTTAT
94801982 AAAATTTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
8 20 0.57
9 15 0.43
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (8 bp):
TTTTTTAT
Found at i:94801998 original size:20 final size:20
Alignment explanation
Indices: 94801975--94802013 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
94801965 TTTTTTGATA
94801975 TTTTTATAAAATTTAATAAT
1 TTTTTATAAAATTTAATAAT
* * *
94801995 TTTTTTTACAATTTTATAA
1 TTTTTATAAAATTTAATAA
94802014 AAATTTTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTTATAAAATTTAATAAT
Found at i:94802842 original size:38 final size:38
Alignment explanation
Indices: 94802791--94802866 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
94802781 TAGGCGCCGC
94802791 AAGCACTCCAACCGTCACTCTCCAATCGACGCCTCCAT
1 AAGCACTCCAACCGTCACTCTCCAATCGACGCCTCCAT
*
94802829 AAGCACTCCAACCGTCACTCTCCAATTGACGCCTCCAT
1 AAGCACTCCAACCGTCACTCTCCAATCGACGCCTCCAT
94802867 CAGTGCCGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.26, C:0.43, G:0.11, T:0.20
Consensus pattern (38 bp):
AAGCACTCCAACCGTCACTCTCCAATCGACGCCTCCAT
Found at i:94803977 original size:21 final size:21
Alignment explanation
Indices: 94803953--94804007 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
94803943 CTTATAAATT
94803953 TTTATTATATATACATTTTAC
1 TTTATTATATATACATTTTAC
**
94803974 TTTATGTAT-TATTTATTTTAC
1 TTTAT-TATATATACATTTTAC
*
94803995 TATATTTATATAT
1 TTTA-TTATATAT
94804008 GTAAATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 21 0.75
22 7 0.25
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTATTATATATACATTTTAC
Found at i:94807527 original size:17 final size:17
Alignment explanation
Indices: 94807484--94807516 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
94807474 TGGATTAATG
*
94807484 ATACATATAGATAATAC
1 ATACATAAAGATAATAC
94807501 ATACATAAAGATAATA
1 ATACATAAAGATAATA
94807517 ATATATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.09, G:0.06, T:0.27
Consensus pattern (17 bp):
ATACATAAAGATAATAC
Found at i:94807642 original size:16 final size:16
Alignment explanation
Indices: 94807621--94807651 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94807611 TATATATACA
94807621 TACATAGAAAAATATT
1 TACATAGAAAAATATT
*
94807637 TACATAGAATAATAT
1 TACATAGAAAAATAT
94807652 GAAATCAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (16 bp):
TACATAGAAAAATATT
Found at i:94810207 original size:10 final size:9
Alignment explanation
Indices: 94810186--94810219 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
94810176 AATCTGTGTG
*
94810186 TTCTTATTT
1 TTCTTTTTT
94810195 TTCTTTCTTT
1 TTCTTT-TTT
94810205 TTCTTTTTT
1 TTCTTTTTT
94810214 TTCTTT
1 TTCTTT
94810220 GTGATCGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:94815913 original size:21 final size:21
Alignment explanation
Indices: 94815875--94815914 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
94815865 CTATTTACCA
* * *
94815875 GCCATTAGACCTATTCAAAAT
1 GCCATTAAACATACTCAAAAT
94815896 GCCATTAAACATACTCAAA
1 GCCATTAAACATACTCAAA
94815915 TCATGTTAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.25
Consensus pattern (21 bp):
GCCATTAAACATACTCAAAAT
Found at i:94816710 original size:37 final size:37
Alignment explanation
Indices: 94816658--94816745 Score: 133
Period size: 37 Copynumber: 2.4 Consensus size: 37
94816648 ACACAAGTAG
* *
94816658 TCCAACCGA-AACACGCCAAATGCTTATGAGAGCTAA
1 TCCAACCGATAACACGCCAAATGCTCATAAGAGCTAA
*
94816694 TCCAACCAATAACACGCCAAATGCTCATAAGAGCTAA
1 TCCAACCGATAACACGCCAAATGCTCATAAGAGCTAA
*
94816731 TCCAATCGATAACAC
1 TCCAACCGATAACAC
94816746 CCCTCGACAC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 8 0.17
37 38 0.83
ACGTcount: A:0.41, C:0.30, G:0.12, T:0.17
Consensus pattern (37 bp):
TCCAACCGATAACACGCCAAATGCTCATAAGAGCTAA
Found at i:94834893 original size:12 final size:12
Alignment explanation
Indices: 94834873--94834920 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
94834863 GTGGGAGTAA
94834873 GGTTCTATATTT
1 GGTTCTATATTT
*
94834885 GGTTTTATATGTT
1 GGTTCTATAT-TT
94834898 AAGGTTCTATATTT
1 --GGTTCTATATTT
*
94834912 GGTTTTATA
1 GGTTCTATA
94834921 GGTTAATGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
12 17 0.57
13 2 0.07
14 2 0.07
15 9 0.30
ACGTcount: A:0.21, C:0.04, G:0.19, T:0.56
Consensus pattern (12 bp):
GGTTCTATATTT
Found at i:94834900 original size:27 final size:27
Alignment explanation
Indices: 94834870--94834926 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
94834860 TTAGTGGGAG
*
94834870 TAAGGTTCTATATTTGGTTTTATATGT
1 TAAGGTTCTATATTTGGTTTTATAGGT
94834897 TAAGGTTCTATATTTGGTTTTATAGGT
1 TAAGGTTCTATATTTGGTTTTATAGGT
94834924 TAA
1 TAA
94834927 TGACATACTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.04, G:0.19, T:0.53
Consensus pattern (27 bp):
TAAGGTTCTATATTTGGTTTTATAGGT
Found at i:94834908 original size:15 final size:14
Alignment explanation
Indices: 94834870--94834911 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 14
94834860 TTAGTGGGAG
94834870 TAAGGTTCTATATT
1 TAAGGTTCTATATT
*
94834884 T--GGTTTTATATGT
1 TAAGGTTCTATAT-T
94834897 TAAGGTTCTATATT
1 TAAGGTTCTATATT
94834911 T
1 T
94834912 GGTTTTATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
12 9 0.39
13 2 0.09
14 3 0.13
15 9 0.39
ACGTcount: A:0.24, C:0.05, G:0.17, T:0.55
Consensus pattern (14 bp):
TAAGGTTCTATATT
Found at i:94841814 original size:15 final size:15
Alignment explanation
Indices: 94841780--94841816 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
94841770 GCGATGTATA
*
94841780 ATGTGATACATGATT
1 ATGTGATACATGATC
*
94841795 GTGTGATACATGATC
1 ATGTGATACATGATC
94841810 ATGTGAT
1 ATGTGAT
94841817 GTGTGTGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.38
Consensus pattern (15 bp):
ATGTGATACATGATC
Found at i:94842260 original size:47 final size:46
Alignment explanation
Indices: 94842206--94842365 Score: 160
Period size: 47 Copynumber: 3.4 Consensus size: 46
94842196 TTTTATATGG
* *
94842206 CCTTTGTGGTGTATCCTGTATGTTGCATTTGTGGCGTACTCTGATAT
1 CCTTTGTGGTGTATTCTGTATGTTGC-TTTGTGGCGTACTCTGATAA
* *
94842253 CCTTTGTGGTGTATTTTGCATGTTGCCTTTGTGGCGTACTCTGATAA
1 CCTTTGTGGTGTATTCTGTATGTTG-CTTTGTGGCGTACTCTGATAA
* * * * * * * *
94842300 CATTTGGGGCGTATTCTATATGTTATCTTTGTGGTGTACTCTGGTAG
1 CCTTTGTGGTGTATTCTGTATGTT-GCTTTGTGGCGTACTCTGATAA
*
94842347 GCTTTGTGGCT-TATTCTGT
1 CCTTTGTGG-TGTATTCTGT
94842366 CTGGCCCTTA
Statistics
Matches: 91, Mismatches: 19, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
47 90 0.99
48 1 0.01
ACGTcount: A:0.12, C:0.16, G:0.26, T:0.46
Consensus pattern (46 bp):
CCTTTGTGGTGTATTCTGTATGTTGCTTTGTGGCGTACTCTGATAA
Found at i:94842261 original size:22 final size:22
Alignment explanation
Indices: 94842233--94842320 Score: 70
Period size: 22 Copynumber: 3.9 Consensus size: 22
94842223 GTATGTTGCA
94842233 TTTGTGGCGTACTCTGATATCC
1 TTTGTGGCGTACTCTGATATCC
* * * *
94842255 TTTGTGGTGTATTTTGCATGTTGCC
1 TTTGTGGCGTACTCTG-AT-AT-CC
* *
94842280 TTTGTGGCGTACTCTGATAACA
1 TTTGTGGCGTACTCTGATATCC
* *
94842302 TTTGGGGCGTATTCT-ATAT
1 TTTGTGGCGTACTCTGATAT
94842321 GTTATCTTTG
Statistics
Matches: 50, Mismatches: 13, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
21 3 0.06
22 27 0.54
23 2 0.04
24 3 0.06
25 15 0.30
ACGTcount: A:0.15, C:0.16, G:0.25, T:0.44
Consensus pattern (22 bp):
TTTGTGGCGTACTCTGATATCC
Found at i:94852742 original size:31 final size:31
Alignment explanation
Indices: 94852707--94852770 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
94852697 CCTTTTCATA
*
94852707 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACCGGGCCGAAGCCT
**
94852738 TTTCATATTTCATATTACCGGGCCGAAGCCT
1 TTTCATATTTCATAACACCGGGCCGAAGCCT
94852769 TT
1 TT
94852771 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTTCATAACACCGGGCCGAAGCCT
Found at i:94853007 original size:25 final size:24
Alignment explanation
Indices: 94852965--94853012 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
94852955 GCTTTATCAT
*
94852965 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGGAGGCATAGCC-CTTTTA
94852990 ATAACTGG-GGCATAAGCCCTTTT
1 ATAACTGGAGGCAT-AGCCCTTTT
94853013 GTACTTCCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGAGGCATAGCCCTTTTA
Found at i:94853087 original size:20 final size:20
Alignment explanation
Indices: 94853062--94853148 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
94853052 TTATGAATAC
94853062 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
94853082 ATCATGTGCATGTCGTACAT
1 ATCATGTGCATATCATACAT
*
94853102 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
*
94853122 ATCATGTGCATGTCATATCA-
1 ATCATGTGCATATCATA-CAT
94853142 ATCATGT
1 ATCATGT
94853149 ATATCAAAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
20 57 0.97
21 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:94853106 original size:40 final size:40
Alignment explanation
Indices: 94853062--94853148 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
94853052 TTATGAATAC
*
94853062 ATCATGTGCATATCATACATATCATGTGCATGTCGTA-CA
1 ATCATGTGCATATCATACATATCATGTGCATGTCATATCA
*
94853101 TATCATGTGCATATCATGCATATCATGTGCATGTCATATCA
1 -ATCATGTGCATATCATACATATCATGTGCATGTCATATCA
94853142 ATCATGT
1 ATCATGT
94853149 ATATCAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 42 0.95
41 2 0.05
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.36
Consensus pattern (40 bp):
ATCATGTGCATATCATACATATCATGTGCATGTCATATCA
Found at i:94853115 original size:11 final size:11
Alignment explanation
Indices: 94853062--94853137 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
94853052 TTATGAATAC
94853062 ATCATGTGCAT
1 ATCATGTGCAT
*
94853073 ATCA--TACAT
1 ATCATGTGCAT
94853082 ATCATGTGCAT
1 ATCATGTGCAT
* *
94853093 GTC--GTACAT
1 ATCATGTGCAT
94853102 ATCATGTGCAT
1 ATCATGTGCAT
94853113 ATCA--TGCAT
1 ATCATGTGCAT
94853122 ATCATGTGCAT
1 ATCATGTGCAT
*
94853133 GTCAT
1 ATCAT
94853138 ATCAATCATG
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
9 24 0.46
11 28 0.54
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:94860727 original size:24 final size:23
Alignment explanation
Indices: 94860681--94860740 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
94860671 ACTTTAGCCA
94860681 TTTTTTTATTTTTATTAAAATTTAT
1 TTTTTTTA-TTTTATTAAAATTT-T
**
94860706 TTTTTTTATTTTATTACTATTTT
1 TTTTTTTATTTTATTAAAATTTT
* *
94860729 TTCTTTAATTTT
1 TTTTTTTATTTT
94860741 CTTCTAGCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 11 0.35
24 12 0.39
25 8 0.26
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTTTATTTTATTAAAATTTT
Found at i:94868215 original size:82 final size:82
Alignment explanation
Indices: 94868112--94868274 Score: 308
Period size: 82 Copynumber: 2.0 Consensus size: 82
94868102 TTCATTACAG
*
94868112 TATAAAAGAAAATTAGCTCTCTGGTCACTAGTGTTGGCCTTTCTAGTGATTCCTAGTGATGATTT
1 TATAAAAGAAAATTAGCTCTCTGGTCACTAGTGTTGGCCTTTCCAGTGATTCCTAGTGATGATTT
94868177 AAATCTTGTAAATCATT
66 AAATCTTGTAAATCATT
*
94868194 TATAAAAGAAAATTAGTTCTCTGGTCACTAGTGTTGGCCTTTCCAGTGATTCCTAGTGATGATTT
1 TATAAAAGAAAATTAGCTCTCTGGTCACTAGTGTTGGCCTTTCCAGTGATTCCTAGTGATGATTT
94868259 AAATCTTGTAAATCAT
66 AAATCTTGTAAATCAT
94868275 GCTAAGTGTC
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (82 bp):
TATAAAAGAAAATTAGCTCTCTGGTCACTAGTGTTGGCCTTTCCAGTGATTCCTAGTGATGATTT
AAATCTTGTAAATCATT
Found at i:94870712 original size:18 final size:19
Alignment explanation
Indices: 94870689--94870724 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94870679 ATTGTTTTCA
*
94870689 TACCTT-TAGGTATATCAC
1 TACCTTGTAAGTATATCAC
94870707 TACCTTGTAAGTATATCA
1 TACCTTGTAAGTATATCA
94870725 TTAATATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (19 bp):
TACCTTGTAAGTATATCAC
Found at i:94871788 original size:18 final size:18
Alignment explanation
Indices: 94871765--94871800 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
94871755 CCTATTGTAT
94871765 TACTGATTTATGCTTACA
1 TACTGATTTATGCTTACA
94871783 TACTGATTTATGCTTACA
1 TACTGATTTATGCTTACA
94871801 CTTGTGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (18 bp):
TACTGATTTATGCTTACA
Found at i:94873095 original size:32 final size:31
Alignment explanation
Indices: 94873016--94873131 Score: 151
Period size: 32 Copynumber: 3.7 Consensus size: 31
94873006 TGCTAGTTTC
94873016 TTATATGTAAAACTAATGTATGATCTACTTT
1 TTATATGTAAAACTAATGTATGATCTACTTT
* * *
94873047 TTATATGTGAACCTAATGTATTATCTACTTT
1 TTATATGTAAAACTAATGTATGATCTACTTT
*
94873078 ATTATATGCAAAACTAATGTATGATCTACTTTT
1 -TTATATGTAAAACTAATGTATGATCTAC-TTT
* * *
94873111 TTAAACGTAAACCTAATGTAT
1 TTATATGTAAAACTAATGTAT
94873132 CATATTTTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
31 28 0.39
32 41 0.57
33 3 0.04
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.43
Consensus pattern (31 bp):
TTATATGTAAAACTAATGTATGATCTACTTT
Found at i:94876684 original size:21 final size:21
Alignment explanation
Indices: 94876658--94876713 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
94876648 CGCTGTTTCT
*
94876658 AATCTCACCGCTACAATATCC
1 AATCTCACCGCTACAATAACC
* *
94876679 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
94876700 AATCTCACCGCTAC
1 AATCTCACCGCTAC
94876714 CGCTGTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.32, C:0.38, G:0.07, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:94876938 original size:19 final size:21
Alignment explanation
Indices: 94876914--94876964 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
94876904 TTTTCCCCCC
*
94876914 TTTCTCCTTTC-TCTTTCC-T
1 TTTCTCCTTTCTTCTTCCCAT
**
94876933 TTTCTCCCCTCTTCTTCCCAT
1 TTTCTCCTTTCTTCTTCCCAT
94876954 TTTCTCCTTTC
1 TTTCTCCTTTC
94876965 GCTCTGACCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 9 0.36
20 6 0.24
21 10 0.40
ACGTcount: A:0.02, C:0.41, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTCTCCTTTCTTCTTCCCAT
Found at i:94878826 original size:7 final size:6
Alignment explanation
Indices: 94878778--94878823 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
94878768 TTCCTTTTCC
* * * *
94878778 TTTTGT TTTTAT CTTTAT TTTTAT TTTTAT TTTTAC TTTCAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
94878824 CATAATTTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:94879734 original size:15 final size:15
Alignment explanation
Indices: 94879714--94879743 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
94879704 TTAAGAATTT
94879714 CTCCCTTTTTATTGA
1 CTCCCTTTTTATTGA
94879729 CTCCCTTTTTATTGA
1 CTCCCTTTTTATTGA
94879744 GATTTGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.07, T:0.53
Consensus pattern (15 bp):
CTCCCTTTTTATTGA
Found at i:94881661 original size:4 final size:4
Alignment explanation
Indices: 94881652--94881684 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
94881642 TTGCTGGCCC
94881652 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
94881685 ACAAAAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:94883114 original size:38 final size:35
Alignment explanation
Indices: 94883072--94883149 Score: 84
Period size: 35 Copynumber: 2.1 Consensus size: 35
94883062 TATTTATTAT
*
94883072 TTTTATTCATATATTATCCATTATAATATTATTATACA
1 TTTTATTCATAAATT-T-CATTATAATA-TATTATACA
* * * *
94883110 TTTTATTTATAAATTTTATTATTATATATTATATA
1 TTTTATTCATAAATTTCATTATAATATATTATACA
94883145 TTTTA
1 TTTTA
94883150 CAATATATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
35 13 0.37
36 8 0.23
37 1 0.03
38 13 0.37
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (35 bp):
TTTTATTCATAAATTTCATTATAATATATTATACA
Found at i:94883161 original size:31 final size:31
Alignment explanation
Indices: 94883066--94883163 Score: 80
Period size: 30 Copynumber: 3.2 Consensus size: 31
94883056 AAATAGTATT
* * * *
94883066 TATTATT-TTTATTCATATATTATCCATTATAA
1 TATTATTATATATT-ATATATTTTACAATAT-A
* *
94883098 TATTATTATACATT-T-TATTTATA-AAT-TT
1 TATTATTATATATTATATATTT-TACAATATA
94883126 TATTATTATATATTATATATTTTACAATATA
1 TATTATTATATATTATATATTTTACAATATA
94883157 TATTATT
1 TATTATT
94883164 CTTTGCATTT
Statistics
Matches: 52, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
28 13 0.25
29 4 0.08
30 14 0.27
31 10 0.19
32 7 0.13
33 4 0.08
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (31 bp):
TATTATTATATATTATATATTTTACAATATA
Found at i:94895419 original size:44 final size:44
Alignment explanation
Indices: 94895356--94895894 Score: 713
Period size: 44 Copynumber: 12.2 Consensus size: 44
94895346 GTAGATCACC
* * * *
94895356 GATAGCTGATTTGGAGTCTCTGTATTGTCAGAGAGCAAATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * *
94895400 GATAGCGGATTTGGCGTCTCTGTATTGACAGAGAGTAAATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
*
94895444 GAT-GACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAG-CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * ** *
94895488 GATAACAGATTTGGCATCTCTGTGCTGACAGAGAGCAGATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* *
94895532 GATAGCAGATTTGGTGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * *
94895576 GATAGCAGATTTGGCATCTCTGTACTGACAAAGAGTAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
*
94895620 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * * *
94895664 GATAACAGATTTTGTGTCTTTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
94895708 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
94895752 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * *
94895796 GATAGCAGATTTGGTGTCT-TAGTATTGACAAAGAGCAGATTGAA
1 GATAGCAGATTTGGCGTCTCT-GTATTGACAGAGAGCAGATCGAA
* * * * ** *
94895840 AATAACAGATTTTGCGTCTCTGTGATAGATGGGGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGT-ATTGACAGAGAGCAGATCGAA
*
94895885 GATAGTAGAT
1 GATAGCAGAT
94895895 CTGATATTTG
Statistics
Matches: 433, Mismatches: 57, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
43 2 0.00
44 408 0.94
45 23 0.05
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (44 bp):
GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
Found at i:94897700 original size:13 final size:13
Alignment explanation
Indices: 94897678--94897719 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
94897668 TATAATATTA
*
94897678 TTATACATTTTAT
1 TTATAAATTTTAT
94897691 TTATAAATTTTA-
1 TTATAAATTTTAT
*
94897703 TTATATATTTATAT
1 TTATAAATTT-TAT
94897717 TTA
1 TTA
94897720 CTATATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 9 0.36
13 13 0.52
14 3 0.12
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (13 bp):
TTATAAATTTTAT
Found at i:94897705 original size:25 final size:25
Alignment explanation
Indices: 94897667--94897732 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
94897657 ATATTATCCA
94897667 TTATAATATTATTATACATTT-TAT
1 TTATAATATTATTATACATTTATAT
* *
94897691 TTATAAATTTTATTATATATTTATAT
1 TTAT-AATATTATTATACATTTATAT
94897717 TTACT-ATATATATTAT
1 TTA-TAATAT-TATTAT
94897733 TCTTTGCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
24 4 0.11
25 18 0.51
26 12 0.34
27 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (25 bp):
TTATAATATTATTATACATTTATAT
Found at i:94897724 original size:17 final size:18
Alignment explanation
Indices: 94897699--94897732 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
94897689 ATTTATAAAT
*
94897699 TTTATTATATAT-TTATA
1 TTTACTATATATATTATA
94897716 TTTACTATATATATTAT
1 TTTACTATATATATTAT
94897733 TCTTTGCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTACTATATATATTATA
Found at i:94900574 original size:21 final size:22
Alignment explanation
Indices: 94900544--94900601 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
94900534 AATGAGTATA
*
94900544 TCATAGCATATCATGTGCAT-C
1 TCATAACATATCATGTGCATAC
94900565 TCATAACATATCATGTGCATAC
1 TCATAACATATCATGTGCATAC
**
94900587 -CATGCCATATCATGT
1 TCATAACATATCATGT
94900602 ATAACAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (22 bp):
TCATAACATATCATGTGCATAC
Found at i:94904891 original size:25 final size:25
Alignment explanation
Indices: 94904862--94904939 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
94904852 ATTCTACCTT
94904862 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
94904887 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
94904909 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
94904934 ATCACA
1 ATCACA
94904940 TTGGCCATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:94904976 original size:47 final size:47
Alignment explanation
Indices: 94904772--94904983 Score: 169
Period size: 47 Copynumber: 4.4 Consensus size: 47
94904762 CACAATATAT
* * * *
94904772 ATATACACATCTCATACATATC-TCACATTAGCCATTCGG-CTTCGTCACAT
1 ATATACACAT-TC--ACAT-TCATCACATTGGCCATTAGGCCTT-ATCACAC
* * * ***
94904822 ATATACAC-TTCCACGTTTATCACATTAGCCATTCTACCTTATCACAC
1 ATATACACATT-CACATTCATCACATTGGCCATTAGGCCTTATCACAC
* ** *
94904869 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATATACACATTCACATTCATCACATTGGCCATTAGGCCTTATCACAC
* ** * *
94904916 ATATGCATGTTCACATTCATCACATTGGCCATTAGGCCTTATCTCAT
1 ATATACACATTCACATTCATCACATTGGCCATTAGGCCTTATCACAC
*
94904963 TTATACACATTCACATTCATC
1 ATATACACATTCACATTCATC
94904984 TCATAAAATC
Statistics
Matches: 138, Mismatches: 20, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
46 1 0.01
47 121 0.88
48 6 0.04
49 2 0.01
50 8 0.06
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
ATATACACATTCACATTCATCACATTGGCCATTAGGCCTTATCACAC
Found at i:94908914 original size:40 final size:40
Alignment explanation
Indices: 94908858--94909136 Score: 423
Period size: 40 Copynumber: 7.0 Consensus size: 40
94908848 GAATACACAT
* * *
94908858 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
94908898 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
94908938 CTCTAGCACGAATACTCTCCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
94908978 CACCAGCACGAATGCTCTTTGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
94909018 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
94909058 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
94909098 CACCAGCATGAATGCTCTTCGAGACTTAGCCCGGCTATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
94909137 TAACTCTCAA
Statistics
Matches: 215, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:94910741 original size:47 final size:47
Alignment explanation
Indices: 94910690--94910833 Score: 180
Period size: 47 Copynumber: 3.1 Consensus size: 47
94910680 TTCCACGTTT
* * *
94910690 ATCACATTAGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGACCTTATCACACATATGCATATTCACATTC
* *
94910737 ATCACATTGGCCATTCGGCCTTATCACACATATGCATATTCATATTC
1 ATCACATTGGCCATTCGACCTTATCACACATATGCATATTCACATTC
* * * ** * *
94910784 ATCACATTGGCCATTAGGCCTTATCTCATTTATACACATTCACATTC
1 ATCACATTGGCCATTCGACCTTATCACACATATGCATATTCACATTC
94910831 ATC
1 ATC
94910834 TCATAAAATC
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 85 1.00
ACGTcount: A:0.28, C:0.28, G:0.08, T:0.35
Consensus pattern (47 bp):
ATCACATTGGCCATTCGACCTTATCACACATATGCATATTCACATTC
Found at i:94918443 original size:31 final size:30
Alignment explanation
Indices: 94918405--94918502 Score: 81
Period size: 33 Copynumber: 3.0 Consensus size: 30
94918395 TAATTTATTT
94918405 TAAATATTTTATATATTATTTATTTTTACTA
1 TAAATATTTTATATATTA-TTATTTTTACTA
* * * *
94918436 TAAATATTATGTATATATAAATGATTTATATTA
1 TAAATATT-T-TATATAT-TATTATTTTTACTA
94918469 TAAATACTGTTTAT-TATTATTATTATTTATCTA
1 TAAATA-T-TTTATATATTATTATT-TTTA-CTA
94918502 T
1 T
94918503 GTTTTATTTA
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
31 13 0.25
32 7 0.13
33 28 0.54
34 3 0.06
35 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (30 bp):
TAAATATTTTATATATTATTATTTTTACTA
Found at i:94918529 original size:14 final size:14
Alignment explanation
Indices: 94918510--94918556 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
94918500 TATGTTTTAT
94918510 TTATATATCTCATA
1 TTATATATCTCATA
*
94918524 TTATATAATCTCATT
1 TTATAT-ATCTCATA
*
94918539 TTACTATATAT-ATA
1 TTA-TATATCTCATA
94918553 TTAT
1 TTAT
94918557 TATTCATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 1 0.04
14 11 0.39
15 13 0.46
16 3 0.11
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (14 bp):
TTATATATCTCATA
Found at i:94930888 original size:94 final size:93
Alignment explanation
Indices: 94930728--94930908 Score: 272
Period size: 94 Copynumber: 1.9 Consensus size: 93
94930718 TCAAAGAAAC
* * * * * *
94930728 AGATTTGGCATCTCCATATTCGATGGAAGTAGATCGGAGACATAGCAGGTCTGACCTTCGTATGT
1 AGATTTGGCATCTCCATATTCGACGGAAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
94930793 TTTCACATCGAAGCAGATCCAACATAAT
66 TTTCACATCGAAGCAGATCCAACATAAT
* *
94930821 AGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGTAGATCTAACCTTTGGATG
1 AGATTTGGCATCTCCATATTCGACGGA-AGCAGATCGAAGACATAGCAGATCTAACCTTCGGATG
*
94930886 TTTTCACATCGAAGTAGATCCAA
65 TTTTCACATCGAAGCAGATCCAA
94930909 GATGATTTGG
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
93 26 0.33
94 52 0.67
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (93 bp):
AGATTTGGCATCTCCATATTCGACGGAAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
TTTCACATCGAAGCAGATCCAACATAAT
Found at i:94931205 original size:44 final size:44
Alignment explanation
Indices: 94931157--94931447 Score: 393
Period size: 44 Copynumber: 6.6 Consensus size: 44
94931147 CGTTTACAAG
* *
94931157 GAGCAGATCAAAGATAGAAGATTTGGCATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * *
94931201 GAGCATATCGAAGATAGCAGAATTGGTATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* *
94931245 GAGCAGATCGAAGATAGCAGATTTGGTATCTCTGTATTGTCAAA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
*
94931289 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * * *
94931333 GAGCAGATTGAAGATAGCATATTTGGTATATCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * * * * *
94931377 AAGTAGATCGAAGATAACATATTTGACGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * *
94931421 GAGCAGAACGAAGATAACAGATCTGGC
1 GAGCAGATCGAAGATAGCAGATTTGGC
94931448 GTTCCTGAGT
Statistics
Matches: 217, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 217 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
Done.