Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 288 of 343
Found at i:95238007 original size:21 final size:21
Alignment explanation
Indices: 95237982--95238030 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
95237972 TTATAAATAC
95237982 AATTTCTTTAA-TTTCTTTTTA
1 AATTT-TTTAACTTTCTTTTTA
* *
95238003 AATTTTTTAACTTTTTTTTTT
1 AATTTTTTAACTTTCTTTTTA
95238024 AATTTTT
1 AATTTTT
95238031 GAAAAGTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.71
Consensus pattern (21 bp):
AATTTTTTAACTTTCTTTTTA
Found at i:95238184 original size:37 final size:35
Alignment explanation
Indices: 95238143--95238216 Score: 96
Period size: 37 Copynumber: 2.1 Consensus size: 35
95238133 AATTTTGTCT
* *
95238143 TTTTCTTA-ATTTTTTTTCTTTTTTAAGTTTTATATTA
1 TTTTCTTATATTATTTTT-TTATTTAA--TTTATATTA
95238180 TTTTCTTATATTATTTTTTTATTTAATTTATATTA
1 TTTTCTTATATTATTTTTTTATTTAATTTATATTA
95238215 TT
1 TT
95238217 AATTTTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 11 0.32
37 15 0.44
38 8 0.24
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.73
Consensus pattern (35 bp):
TTTTCTTATATTATTTTTTTATTTAATTTATATTA
Found at i:95238208 original size:13 final size:13
Alignment explanation
Indices: 95238170--95238201 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
95238160 CTTTTTTAAG
95238170 TTTTATATTATTT
1 TTTTATATTATTT
*
95238183 TCTTATATTATTT
1 TTTTATATTATTT
95238196 TTTTAT
1 TTTTAT
95238202 TTAATTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTATATTATTT
Found at i:95238296 original size:32 final size:33
Alignment explanation
Indices: 95238260--95238330 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
95238250 GTTTTACAAT
*
95238260 TTTTTTAATTTTA-AT-TATTATTTTTAAAATTA
1 TTTTTTAACTTTAGATATA-TATTTTTAAAATTA
*
95238292 TTTTTTAACTTTAGATATATATTTTTGAAATTA
1 TTTTTTAACTTTAGATATATATTTTTAAAATTA
95238325 TTTTTT
1 TTTTTT
95238331 TTATAAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
32 12 0.34
33 21 0.60
34 2 0.06
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (33 bp):
TTTTTTAACTTTAGATATATATTTTTAAAATTA
Found at i:95238354 original size:38 final size:35
Alignment explanation
Indices: 95238259--95238367 Score: 116
Period size: 38 Copynumber: 3.1 Consensus size: 35
95238249 TGTTTTACAA
*
95238259 TTTTTTTAATTTTAATTAT-TATTTTTAAA--ATT
1 TTTTTTTAATTTTAAATATATATTTTTAAATTATT
* * *
95238291 ATTTTTTAACTTTAGATATATATTTTTGAAATTATT
1 TTTTTTTAATTTTAAATATATATTTTT-AAATTATT
*
95238327 TTTTTTATAAATTTTAAATATATATTTTTCAAATTAGT
1 TTTTTT-T-AATTTTAAATATATATTTTT-AAATTATT
95238365 TTT
1 TTT
95238368 GAAATTATTA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
32 15 0.24
33 7 0.11
34 3 0.05
36 8 0.13
37 1 0.02
38 28 0.45
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (35 bp):
TTTTTTTAATTTTAAATATATATTTTTAAATTATT
Found at i:95238573 original size:21 final size:19
Alignment explanation
Indices: 95238534--95238580 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
95238524 CAAACTTTTC
*
95238534 AAAAATTAAAAAAAGTTAA
1 AAAAATTAAAAAAAATTAA
95238553 AAAAATGTAAAAAGAAATTAA
1 AAAAAT-TAAAAA-AAATTAA
*
95238574 AGAAATT
1 AAAAATT
95238581 GTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.25
20 7 0.29
21 11 0.46
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (19 bp):
AAAAATTAAAAAAAATTAA
Found at i:95238651 original size:14 final size:14
Alignment explanation
Indices: 95238632--95238658 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
95238622 AAAAATATAG
95238632 TTAATATTTAAAAA
1 TTAATATTTAAAAA
95238646 TTAATATTTAAAA
1 TTAATATTTAAAA
95238659 TTTTAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAATATTTAAAAA
Found at i:95238656 original size:21 final size:22
Alignment explanation
Indices: 95238638--95238680 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
95238628 ATAGTTAATA
95238638 TTTAAAAATTAATATTTAAAAT
1 TTTAAAAATTAATATTTAAAAT
95238660 TTTAAAAAATTAAT-TTTAAAA
1 TTT-AAAAATTAATATTTAAAA
95238681 ATACATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TTTAAAAATTAATATTTAAAAT
Found at i:95238680 original size:36 final size:35
Alignment explanation
Indices: 95238632--95238773 Score: 130
Period size: 36 Copynumber: 4.0 Consensus size: 35
95238622 AAAAATATAG
95238632 TTAATATTTAAAAATTA-ATATTTAAAATTTTAAAAAA
1 TTAAT-TTTAAAAA-TACATATTTAAAA-TTTAAAAAA
* *
95238669 TTAATTTTAAAAATACATTTTTAAAATATATAAAAA
1 TTAATTTTAAAAATACATATTTAAAATTTA-AAAAA
* * * * *
95238705 TTAATTTCACAAATATATATCT-AAAGTTAAAAAA
1 TTAATTTTAAAAATACATATTTAAAATTTAAAAAA
* *
95238739 -TATTTTTAAAAATA-ATAATTAAAATTTTAAAAAA
1 TTAATTTTAAAAATACATATTTAAAA-TTTAAAAAA
95238773 T
1 T
95238774 ATTATAAAAC
Statistics
Matches: 85, Mismatches: 15, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
32 4 0.05
33 14 0.16
34 13 0.15
35 10 0.12
36 39 0.46
37 5 0.06
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.41
Consensus pattern (35 bp):
TTAATTTTAAAAATACATATTTAAAATTTAAAAAA
Found at i:95238787 original size:22 final size:22
Alignment explanation
Indices: 95238735--95238791 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
95238725 CTAAAGTTAA
*
95238735 AAAATATTTTTAAAAATAATAAT
1 AAAA-ATTTTAAAAAATAATAAT
* *
95238758 TAAAATTTTAAAAAAT-ATTAT
1 AAAAATTTTAAAAAATAATAAT
95238779 AAAACATTTTAAA
1 AAAA-ATTTTAAA
95238792 TATACATTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 7 0.24
22 19 0.66
23 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAAATTTTAAAAAATAATAAT
Found at i:95238860 original size:17 final size:18
Alignment explanation
Indices: 95238840--95238881 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
95238830 AAAACAAAAT
* *
95238840 AAAAAAATGAAATAAG-A
1 AAAAAAATCAAAAAAGTA
95238857 AAAAAAATCAAAAAAGTA
1 AAAAAAATCAAAAAAGTA
95238875 AAAAAAA
1 AAAAAAA
95238882 ATAAAAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.81, C:0.02, G:0.07, T:0.10
Consensus pattern (18 bp):
AAAAAAATCAAAAAAGTA
Found at i:95238871 original size:10 final size:9
Alignment explanation
Indices: 95238817--95238888 Score: 58
Period size: 9 Copynumber: 7.9 Consensus size: 9
95238807 TTTTAAAGTT
95238817 AATAATAAAA
1 AATAA-AAAA
95238827 AATAAAACAA
1 AATAAAA-AA
95238837 AAT-AAAAA
1 AATAAAAAA
* *
95238845 AAT-GAAAT
1 AATAAAAAA
*
95238853 AAGAAAAAA
1 AATAAAAAA
*
95238862 AATCAAAAA
1 AATAAAAAA
*
95238871 AGTAAAAAAA
1 AAT-AAAAAA
95238881 AATAAAAA
1 AATAAAAA
95238889 GATACAATTT
Statistics
Matches: 49, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
8 10 0.20
9 22 0.45
10 17 0.35
ACGTcount: A:0.81, C:0.03, G:0.04, T:0.12
Consensus pattern (9 bp):
AATAAAAAA
Found at i:95239703 original size:20 final size:21
Alignment explanation
Indices: 95239655--95239703 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
95239645 GTAGTGGCGG
* *
95239655 TGAGATTAGTTACTGTAGCGA
1 TGAGATTAGATACGGTAGCGA
* *
95239676 TGAAATTAGATACGGTAG-TA
1 TGAGATTAGATACGGTAGCGA
95239696 TGAGATTA
1 TGAGATTA
95239704 AAAACAACGA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.33
Consensus pattern (21 bp):
TGAGATTAGATACGGTAGCGA
Found at i:95245477 original size:10 final size:9
Alignment explanation
Indices: 95245455--95245504 Score: 50
Period size: 10 Copynumber: 5.6 Consensus size: 9
95245445 ATATGTACAT
95245455 AAAT-TATA
1 AAATATATA
95245463 AAATATATGA
1 AAATATAT-A
95245473 AAATATATA
1 AAATATATA
95245482 AATATATATA
1 AA-ATATATA
* *
95245492 TATTATA-A
1 AAATATATA
95245500 AAATA
1 AAATA
95245505 ATGCATGTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
8 8 0.23
9 10 0.29
10 17 0.49
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (9 bp):
AAATATATA
Found at i:95246094 original size:9 final size:9
Alignment explanation
Indices: 95246082--95246106 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
95246072 ACAGAAAAGA
95246082 AAAAAAAAT
1 AAAAAAAAT
95246091 AAAAAAAAT
1 AAAAAAAAT
95246100 AAAAAAA
1 AAAAAAA
95246107 GCCTCTCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:95247097 original size:99 final size:99
Alignment explanation
Indices: 95246922--95247502 Score: 822
Period size: 99 Copynumber: 5.9 Consensus size: 99
95246912 GTCTCGCCGA
* * * ** *
95246922 GGAAATAAGATTCACCGTTGTGGCTTCGATCTTTTG-GCTGCAATGTCGGGGAAGTGAGATTCGC
1 GGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATATCGGGGAAGTGAGATTCGC
* * *
95246986 TGTTGTAGCTTCAATCCGTTCCACTGCATCACTT
66 TGTTGTAGCTTCAATCTGTTCCACTGCATCGCTC
* * * * * * *
95247020 GGAAGTAAGATTCGCCATTGTGGCTTTAATCTTTTAAATTACAATGTCGGGGAGGTGAGATTTGC
1 GGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATATCGGGGAAGTGAGATTCGC
* *
95247085 TGTTGTAGCTTCAATCCGTTCCACTGCATTGCTC
66 TGTTGTAGCTTCAATCTGTTCCACTGCATCGCTC
* * * * *
95247119 GGGAGTAAGATTCACCGTTGTGGCTTTAATCTTTTGAATTGCGATATCGAGGAAGTGAGATTCGC
1 GGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATATCGGGGAAGTGAGATTCGC
* *
95247184 TGTTGTAGCTTCAATCTGTTCCACTGCATCACTT
66 TGTTGTAGCTTCAATCTGTTCCACTGCATCGCTC
* * *
95247218 GGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCGATATCAGGGAAGTGAGATTCGT
1 GGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATATCGGGGAAGTGAGATTCGC
95247283 TGTTGTAGCTTCAATCTGTTCCACTGCATCGCTC
66 TGTTGTAGCTTCAATCTGTTCCACTGCATCGCTC
* * *
95247317 GGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCGATATCGAGGAAGTGAGATTCGT
1 GGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATATCGGGGAAGTGAGATTCGC
95247382 TGTTGTAGCTTCAATCTGTTCCACTGCATCGCTC
66 TGTTGTAGCTTCAATCTGTTCCACTGCATCGCTC
* * * * *
95247416 GAAAGTAAGATTCGCCGTTGTGGCTTCAATATTTTGAATTGCAATGTCGGGGAAGTAAGATCCGC
1 GGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATATCGGGGAAGTGAGATTCGC
*
95247481 TATTGTAGCTTCAATCTGTTCC
66 TGTTGTAGCTTCAATCTGTTCC
95247503 GCTGTCAGTA
Statistics
Matches: 435, Mismatches: 47, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
98 30 0.07
99 405 0.93
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (99 bp):
GGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATATCGGGGAAGTGAGATTCGC
TGTTGTAGCTTCAATCTGTTCCACTGCATCGCTC
Found at i:95260226 original size:10 final size:9
Alignment explanation
Indices: 95260204--95260253 Score: 50
Period size: 10 Copynumber: 5.6 Consensus size: 9
95260194 ATATGTACAT
95260204 AAAT-TATA
1 AAATATATA
95260212 AAATATATGA
1 AAATATAT-A
95260222 AAATATATA
1 AAATATATA
95260231 AATATATATA
1 AA-ATATATA
* *
95260241 TATTATA-A
1 AAATATATA
95260249 AAATA
1 AAATA
95260254 ATGCATGTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
8 8 0.23
9 10 0.29
10 17 0.49
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (9 bp):
AAATATATA
Found at i:95260847 original size:11 final size:10
Alignment explanation
Indices: 95260826--95260857 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
95260816 AACAGAACAG
*
95260826 AAAAGAAAAA
1 AAAATAAAAA
95260836 AAAATAAAAA
1 AAAATAAAAA
95260846 AAAATAAAAA
1 AAAATAAAAA
95260856 AA
1 AA
95260858 GCCTCTCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.91, C:0.00, G:0.03, T:0.06
Consensus pattern (10 bp):
AAAATAAAAA
Found at i:95265283 original size:133 final size:133
Alignment explanation
Indices: 95265143--95265417 Score: 541
Period size: 133 Copynumber: 2.1 Consensus size: 133
95265133 AATAATTAGT
95265143 TATATATATTTACTACCATTATATGCATTTCGCTTATTAAATTTCTAAACATAAATAACTTAATA
1 TATATATATTTACTACCATTATATGCATTTCGCTTATTAAATTTCTAAACATAAATAACTTAATA
95265208 TATTTTTAGCATTTACATTATAGTACCATATATATTTAATTCCTTATATGCTACAAATTATATAT
66 TATTTTTAGCATTTACATTATAGTACCATATATATTTAATTCCTTATATGCTACAAATTATATAT
95265273 GTA
131 GTA
*
95265276 TATATATATTTACTACCATTATATGCATTTCGCTTATTAAATTTTTAAACATAAATAACTTAATA
1 TATATATATTTACTACCATTATATGCATTTCGCTTATTAAATTTCTAAACATAAATAACTTAATA
95265341 TATTTTTAGCATTTACATTATAGTACCATATATATTTAATTCCTTATATGCTACAAATTATATAT
66 TATTTTTAGCATTTACATTATAGTACCATATATATTTAATTCCTTATATGCTACAAATTATATAT
95265406 GTA
131 GTA
95265409 TATATATAT
1 TATATATAT
95265418 AAACTAAATG
Statistics
Matches: 141, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 141 1.00
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (133 bp):
TATATATATTTACTACCATTATATGCATTTCGCTTATTAAATTTCTAAACATAAATAACTTAATA
TATTTTTAGCATTTACATTATAGTACCATATATATTTAATTCCTTATATGCTACAAATTATATAT
GTA
Found at i:95268949 original size:18 final size:19
Alignment explanation
Indices: 95268908--95268948 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
95268898 AAAAAATCAT
95268908 AAAAGTAAACTAACCTTAA
1 AAAAGTAAACTAACCTTAA
*
95268927 AAAAGTAAACTACCCTTAA
1 AAAAGTAAACTAACCTTAA
95268946 AAA
1 AAA
95268949 GATGAAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.59, C:0.17, G:0.05, T:0.20
Consensus pattern (19 bp):
AAAAGTAAACTAACCTTAA
Found at i:95270698 original size:3 final size:3
Alignment explanation
Indices: 95270690--95270730 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
95270680 ATACCATTGA
95270690 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
95270731 GCTTTGGTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:95271202 original size:43 final size:44
Alignment explanation
Indices: 95271127--95271212 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 44
95271117 TAAGTAAAAT
*
95271127 CATATTTCATATATATTTTTTATGTGTGTTAATGAGTATTATAC
1 CATATTTCATATATATTTTTTATGTATGTTAATGAGTATTATAC
95271171 CATATTT-A-ATATAGTTTTTTATGTATGTTAATGAGTATTATA
1 CATATTTCATATATA-TTTTTTATGTATGTTAATGAGTATTATA
95271213 AATTTATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
42 5 0.12
43 28 0.70
44 7 0.17
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.52
Consensus pattern (44 bp):
CATATTTCATATATATTTTTTATGTATGTTAATGAGTATTATAC
Found at i:95271953 original size:50 final size:50
Alignment explanation
Indices: 95271878--95271978 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
95271868 CTTTTATGGA
95271878 GTATGACACTACTTTGATCTTAAGGGGGATCGGTAAGTTTACAAGAATAC
1 GTATGACACTACTTTGATCTTAAGGGGGATCGGTAAGTTTACAAGAATAC
* * *
95271928 GTATGACACTACTTTGATCTTAAGGGGGATTGGTAGGTTTACGAGAATAC
1 GTATGACACTACTTTGATCTTAAGGGGGATCGGTAAGTTTACAAGAATAC
95271978 G
1 G
95271979 AGTAAAAGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.31
Consensus pattern (50 bp):
GTATGACACTACTTTGATCTTAAGGGGGATCGGTAAGTTTACAAGAATAC
Found at i:95277907 original size:46 final size:45
Alignment explanation
Indices: 95277764--95277907 Score: 112
Period size: 46 Copynumber: 3.1 Consensus size: 45
95277754 CCCACTCATA
* * *
95277764 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--AATATC-C
* * * * * *** *
95277812 A-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGCTCG--GATGCCCAAATATCC
95277857 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATATTCC
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATA-TCC
95277903 AGTGA
1 AGTGA
95277908 CATGTCACTT
Statistics
Matches: 74, Mismatches: 17, Indels: 12
0.72 0.17 0.12
Matches are distributed among these distances:
44 6 0.08
45 2 0.03
46 31 0.42
47 30 0.41
48 1 0.01
49 4 0.05
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATATCC
Found at i:95281795 original size:21 final size:21
Alignment explanation
Indices: 95281769--95281817 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
95281759 AATAGAAGTT
*
95281769 GTGAATGACAGGAAATTGATA
1 GTGAATGACAGGAAATTGACA
*
95281790 GTGAATGACAGGGAATTGACA
1 GTGAATGACAGGAAATTGACA
95281811 -TGAATGA
1 GTGAATGA
95281818 TTTTATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.41, C:0.06, G:0.31, T:0.22
Consensus pattern (21 bp):
GTGAATGACAGGAAATTGACA
Found at i:95290381 original size:8 final size:8
Alignment explanation
Indices: 95290368--95290398 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
95290358 AGATCGGCAC
95290368 AAGCCGAA
1 AAGCCGAA
95290376 AAGCCGAA
1 AAGCCGAA
*
95290384 ATGCCGAA
1 AAGCCGAA
95290392 AAGCCGA
1 AAGCCGA
95290399 TATTTTGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.45, C:0.26, G:0.26, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:95290836 original size:27 final size:26
Alignment explanation
Indices: 95290787--95290918 Score: 142
Period size: 27 Copynumber: 4.9 Consensus size: 26
95290777 AGGAAGCGTC
* *
95290787 CTGGTGGCTATGCTACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
*
95290814 CTGGTGGCTCTACCACATATATCTG-T
1 CTGGTGGCTCTGCCACA-ATATCTGAT
*
95290840 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAA-TATCTGAT
95290868 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* *
95290895 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
95290919 GCAGCCTCGC
Statistics
Matches: 91, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
26 9 0.10
27 80 0.88
28 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:95290900 original size:54 final size:54
Alignment explanation
Indices: 95290784--95290892 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
95290774 TGGAGGAAGC
*
95290784 GTCCTGGTGGCTATGCTACAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
*
95290838 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
95290891 GT
1 GT
95290893 ATCTGGTGAC
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
53 8 0.15
54 45 0.85
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
Found at i:95298435 original size:20 final size:20
Alignment explanation
Indices: 95298410--95298451 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
95298400 ATTGAATTAC
** *
95298410 TAATTACATTTCTATTTCAT
1 TAATTACAACTCTATTCCAT
95298430 TAATTACAACTCTATTCCAT
1 TAATTACAACTCTATTCCAT
95298450 TA
1 TA
95298452 CAGTCATATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (20 bp):
TAATTACAACTCTATTCCAT
Found at i:95299858 original size:10 final size:10
Alignment explanation
Indices: 95299840--95299916 Score: 68
Period size: 10 Copynumber: 7.7 Consensus size: 10
95299830 ATACAATTCA
*
95299840 AACAAAATAG
1 AACAGAATAG
95299850 AACAGAATAG
1 AACAGAATAG
*
95299860 AGCAGAATAG
1 AACAGAATAG
*
95299870 AACA-AGATGG
1 AACAGA-ATAG
*
95299880 AACAGAGTAG
1 AACAGAATAG
* *
95299890 AGCA-ATACAG
1 AACAGA-ATAG
95299900 AACAGAATAG
1 AACAGAATAG
95299910 AACAGAA
1 AACAGAA
95299917 CAGAGTAGGA
Statistics
Matches: 52, Mismatches: 11, Indels: 8
0.73 0.15 0.11
Matches are distributed among these distances:
9 2 0.04
10 48 0.92
11 2 0.04
ACGTcount: A:0.57, C:0.12, G:0.22, T:0.09
Consensus pattern (10 bp):
AACAGAATAG
Found at i:95299874 original size:30 final size:30
Alignment explanation
Indices: 95299840--95299921 Score: 94
Period size: 30 Copynumber: 2.7 Consensus size: 30
95299830 ATACAATTCA
*
95299840 AACAAAATAGAACAGAATAGAGCAGA-ATAG
1 AACAAAATAGAACAGAATAGAGCA-ATACAG
* * *
95299870 AACAAGATGGAACAGAGTAGAGCAATACAG
1 AACAAAATAGAACAGAATAGAGCAATACAG
* *
95299900 AACAGAATAGAACAGAACAGAG
1 AACAAAATAGAACAGAATAGAG
95299922 TAGGACAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 1 0.02
30 41 0.98
ACGTcount: A:0.56, C:0.12, G:0.23, T:0.09
Consensus pattern (30 bp):
AACAAAATAGAACAGAATAGAGCAATACAG
Found at i:95301466 original size:7 final size:7
Alignment explanation
Indices: 95301454--95301484 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
95301444 GGCAGGAAGG
95301454 AAAAGAA
1 AAAAGAA
95301461 AAAAGAA
1 AAAAGAA
95301468 AAAAGAA
1 AAAAGAA
95301475 AAAAGAA
1 AAAAGAA
95301482 AAA
1 AAA
95301485 CAAAATGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:95304409 original size:92 final size:92
Alignment explanation
Indices: 95304286--95304564 Score: 342
Period size: 92 Copynumber: 3.0 Consensus size: 92
95304276 AAGATCAGAT
* * *
95304286 AATGGTATGTAGCGTAGCTAACGTACATGCGGCACAGTGCAATGTGGTAATCTGCTATACCGATA
1 AATGGTACGTAGCGTAGCTAACGTACATGCGGTACAGTGCAATGCGGTAATCTGCTATACCGATA
* * *
95304351 GATTGCAGTAAAATTGCCAGTTCAGCC
66 TATTGCAGTAAAACTGCCAGTTCAGTC
* * * * * * * *
95304378 AATGGTACGTAGTGTATCTAATGTACATGCGGTACAATGCAATACGATAATCCGCTATACTGATA
1 AATGGTACGTAGCGTAGCTAACGTACATGCGGTACAGTGCAATGCGGTAATCTGCTATACCGATA
** * *
95304443 TATTATAGTAAAACTACCAGTTCAGTT
66 TATTGCAGTAAAACTGCCAGTTCAGTC
* * * *
95304470 AATGGTACGTAGCGTAGCTAACGTACATGTGGTATAGTGCAATGCAGTAATCTGCTATACCTATA
1 AATGGTACGTAGCGTAGCTAACGTACATGCGGTACAGTGCAATGCGGTAATCTGCTATACCGATA
* *
95304535 TATTGGAATAAAACTGCCAGTTCAGTC
66 TATTGCAGTAAAACTGCCAGTTCAGTC
95304562 AAT
1 AAT
95304565 CTCAATCTCC
Statistics
Matches: 152, Mismatches: 35, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
92 152 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (92 bp):
AATGGTACGTAGCGTAGCTAACGTACATGCGGTACAGTGCAATGCGGTAATCTGCTATACCGATA
TATTGCAGTAAAACTGCCAGTTCAGTC
Found at i:95307273 original size:28 final size:28
Alignment explanation
Indices: 95307234--95307303 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
95307224 TTCTGCCCCT
* *
95307234 TTTTTCAGATTTTATAATTTTACCCATA
1 TTTTTCAGATTTTACAATATTACCCATA
* *
95307262 TTTTTCAAATTTTACAATATTATCCATA
1 TTTTTCAGATTTTACAATATTACCCATA
95307290 TTTTTCAGATTTTA
1 TTTTTCAGATTTTA
95307304 GATGTTACCT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.30, C:0.13, G:0.03, T:0.54
Consensus pattern (28 bp):
TTTTTCAGATTTTACAATATTACCCATA
Found at i:95308981 original size:27 final size:28
Alignment explanation
Indices: 95308951--95309025 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 28
95308941 TAAAATAATC
*
95308951 AATATATATAGAA-ACAAT-ATATAATAA
1 AATATAAATAGAATA-AATAATATAATAA
95308978 AATATAAATAGAATAAATAACATATAATAA
1 AATATAAATAGAATAAAT-A-ATATAATAA
*
95309008 AATATAACATATAATAAA
1 AATATAA-ATAGAATAAA
95309026 ATTTATAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 15 0.37
28 1 0.02
30 16 0.39
31 9 0.22
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (28 bp):
AATATAAATAGAATAAATAATATAATAA
Found at i:95308984 original size:10 final size:10
Alignment explanation
Indices: 95308969--95309014 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
95308959 TAGAAACAAT
95308969 ATATAATAAA
1 ATATAATAAA
*
95308979 ATATAAATAGA
1 ATAT-AATAAA
*
95308990 ATA-AATAAC
1 ATATAATAAA
95308999 ATATAATAAA
1 ATATAATAAA
95309009 ATATAA
1 ATATAA
95309015 CATATAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
9 7 0.23
10 15 0.50
11 8 0.27
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (10 bp):
ATATAATAAA
Found at i:95309016 original size:17 final size:17
Alignment explanation
Indices: 95308969--95309027 Score: 81
Period size: 17 Copynumber: 3.7 Consensus size: 17
95308959 TAGAAACAAT
95308969 ATATAATAAAATATAA-
1 ATATAATAAAATATAAC
*
95308985 ATAGAAT--AA-ATAAC
1 ATATAATAAAATATAAC
95308999 ATATAATAAAATATAAC
1 ATATAATAAAATATAAC
95309016 ATATAATAAAAT
1 ATATAATAAAAT
95309028 TTATAAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
13 4 0.11
14 8 0.22
16 8 0.22
17 17 0.46
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (17 bp):
ATATAATAAAATATAAC
Found at i:95309024 original size:10 final size:9
Alignment explanation
Indices: 95308927--95309025 Score: 52
Period size: 9 Copynumber: 11.1 Consensus size: 9
95308917 GTAAATTTAC
95308927 ATATAA-AA
1 ATATAATAA
*
95308935 ATATAGTAA
1 ATATAATAA
*
95308944 A-ATAATCA
1 ATATAATAA
95308952 ATATATATAGA
1 ATATA-ATA-A
*
95308963 A-ACAAT--
1 ATATAATAA
95308969 ATATAATAAA
1 ATATAAT-AA
95308979 ATATAAATAGA
1 ATAT-AATA-A
95308990 ATA-AATAA
1 ATATAATAA
95308998 CATATAATAA
1 -ATATAATAA
95309008 A-AT-ATAA
1 ATATAATAA
95309015 CATATAATAA
1 -ATATAATAA
95309025 A
1 A
95309026 ATTTATAAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 29
0.67 0.06 0.28
Matches are distributed among these distances:
6 1 0.01
7 8 0.11
8 15 0.21
9 19 0.27
10 18 0.26
11 9 0.13
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (9 bp):
ATATAATAA
Found at i:95309145 original size:16 final size:16
Alignment explanation
Indices: 95309111--95309148 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
95309101 TATATATAGT
*
95309111 ATTTAAAATAAATTGA
1 ATTTAAAAAAAATTGA
95309127 ATTTCAAAAAAAATT-A
1 ATTT-AAAAAAAATTGA
95309143 ATTTAA
1 ATTTAA
95309149 TTTAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 9 0.45
17 9 0.45
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (16 bp):
ATTTAAAAAAAATTGA
Found at i:95310737 original size:44 final size:44
Alignment explanation
Indices: 95310688--95311169 Score: 546
Period size: 44 Copynumber: 11.0 Consensus size: 44
95310678 GCCATGTTGA
* **
95310688 TATCTTCGATCTGCTCTCTGACAATACAAAGATACCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
*
95310732 TATCTTCGATCTGCTCTCTGACAATATAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* *
95310776 TGTCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * *
95310820 TATCTTCAATTTGCTCCCTGACAATACAGAGATGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* *
95310864 TATCTTTGATCTGCTCTTTGACAATACAGAGACGCCAAATCTG-
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * * * *
95310907 TTTCTTGGATTTACTC-CTCGTCAAATAC-GAAGATGCCAAA--T-C
1 TATCTTCGATCTGCTCTCT-GAC-AATACAG-AGACGCCAAATCTGC
* * * ** * *
95310949 -ATCTTGGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATCTGC
* *
95310993 TATCTTCGATCTACTCTCTGACAATACAGAGACACCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
95311037 TATCTTCGATCTGCTCCCTAACAATATAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
95311081 TATCTTCGATCTACTCACTGACAATATAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * *
95311125 TAACTTTGATCTGCTCCCTGACAATACAGAGACACCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
95311169 T
1 T
95311170 TGGATCTGCT
Statistics
Matches: 374, Mismatches: 54, Indels: 20
0.83 0.12 0.04
Matches are distributed among these distances:
41 29 0.08
42 4 0.01
43 16 0.04
44 308 0.82
45 17 0.05
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (44 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
Found at i:95311012 original size:217 final size:216
Alignment explanation
Indices: 95310733--95311123 Score: 593
Period size: 217 Copynumber: 1.8 Consensus size: 216
95310723 CAAATCTGCT
* * *
95310733 ATCTTCGATCTGCTCTCTGACAATATAGAGACGCCAAATCTGCTGTCTTCGATCTGCTCTCTGAC
1 ATCTTCGATCTGCTCTCCGACAATATAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCTGAC
** * * *
95310798 AATACAGAGATGCCAAATCTGCTATCTTCAATTTGCTCCCTGACAATACAGAGATGCCAAATCTG
66 AATACAGAGACACCAAATCTGCTATCTTCAATCTGCTCCCTAACAATACAGAGACGCCAAATCTG
* * **
95310863 CTATCTTTGATCTGCTCTTTGACAATACAGAGACGCCAAATCTGTTTCTTGGATTTACTCCTCGT
131 CTATCTTCGATCTACTCACTGACAATACAGAGACGCCAAATCTGTTTCTTGGATTTACTCCTCGT
95310928 CAAATACGAAGATGCCAAATC
196 CAAATACGAAGATGCCAAATC
* * * * *
95310949 ATCTTGGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTATCTTCGATCTACTCTCTGA
1 ATCTTCGATCTGCTCTCCGAC-AATATAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCTGA
* *
95311014 CAATACAGAGACACCAAATCTGCTATCTTCGATCTGCTCCCTAACAATATAGAGACGCCAAATCT
65 CAATACAGAGACACCAAATCTGCTATCTTCAATCTGCTCCCTAACAATACAGAGACGCCAAATCT
*
95311079 GCTATCTTCGATCTACTCACTGACAATATAGAGACGCCAAATCTG
130 GCTATCTTCGATCTACTCACTGACAATACAGAGACGCCAAATCTG
95311124 CTAACTTTGA
Statistics
Matches: 154, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
216 18 0.12
217 136 0.88
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (216 bp):
ATCTTCGATCTGCTCTCCGACAATATAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCTGAC
AATACAGAGACACCAAATCTGCTATCTTCAATCTGCTCCCTAACAATACAGAGACGCCAAATCTG
CTATCTTCGATCTACTCACTGACAATACAGAGACGCCAAATCTGTTTCTTGGATTTACTCCTCGT
CAAATACGAAGATGCCAAATC
Found at i:95323097 original size:15 final size:16
Alignment explanation
Indices: 95323061--95323101 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
95323051 TACATATTAA
95323061 AATATAGTAAAATAATC
1 AATATA-TAAAATAATC
*
95323078 AATATATAAAGTAA-C
1 AATATATAAAATAATC
95323093 AATATATAA
1 AATATATAA
95323102 TAAAATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.43
16 7 0.30
17 6 0.26
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (16 bp):
AATATATAAAATAATC
Found at i:95323268 original size:17 final size:16
Alignment explanation
Indices: 95323239--95323277 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
95323229 TATATATAGT
*
95323239 ATTTAAAATAAATTGA
1 ATTTAAAAAAAATTGA
*
95323255 ATTTCAAAAAAAATTTA
1 ATTT-AAAAAAAATTGA
95323272 ATTTAA
1 ATTTAA
95323278 TTTAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (16 bp):
ATTTAAAAAAAATTGA
Found at i:95324492 original size:14 final size:14
Alignment explanation
Indices: 95324470--95324513 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
95324460 GTAAATGAAC
95324470 TTTTATTTTTTAAT
1 TTTTATTTTTTAAT
* **
95324484 TTTTGTTTTTTGTT
1 TTTTATTTTTTAAT
95324498 TTTTATTTATTTAAT
1 TTTTATTT-TTTAAT
95324513 T
1 T
95324514 ATGGGCCCGG
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.80
Consensus pattern (14 bp):
TTTTATTTTTTAAT
Found at i:95329035 original size:24 final size:24
Alignment explanation
Indices: 95329008--95329060 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
95328998 TTTTTAGAAG
* *
95329008 ATTTAGTATTAATTAGTATAATAT
1 ATTTAGCATTAATTAGCATAATAT
* *
95329032 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTAATTAGCATAATAT
95329056 ATTTA
1 ATTTA
95329061 ACCTGCGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.51
Consensus pattern (24 bp):
ATTTAGCATTAATTAGCATAATAT
Found at i:95329765 original size:28 final size:28
Alignment explanation
Indices: 95329724--95329793 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
95329714 AGCTTGTCCT
* * *
95329724 TATTTTTCAAATTTTACAAAGTTGCCTC
1 TATTTTTTAGATTTTACAAAGTTGCCCC
*** *
95329752 TATTTTTTAGATTTTACACTTTTTCCCC
1 TATTTTTTAGATTTTACAAAGTTGCCCC
95329780 TATTTTTTAGATTT
1 TATTTTTTAGATTT
95329794 ACAGTTTTGC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.23, C:0.16, G:0.06, T:0.56
Consensus pattern (28 bp):
TATTTTTTAGATTTTACAAAGTTGCCCC
Found at i:95332662 original size:90 final size:90
Alignment explanation
Indices: 95332505--95332709 Score: 239
Period size: 90 Copynumber: 2.3 Consensus size: 90
95332495 GATTAATAAT
* * * * * ** *
95332505 CTGCAACCCTAGTGGTTCATCCACAGATTATCTGGCAGCTTTTATTTACAAATATTTTTTGCATT
1 CTGCAACACTGGTGGTTCATCCACCGATTATCTAGCAGCTTTCATTTACAAATACGTTGTGCATT
* * * *
95332570 CACAATCATCTAATAGCTTATTAAC
66 CACAACCATCTAACAACGTATTAAC
* ** **
95332595 CTGCAACACTGGTGGTTCATCCACCGATTTTCTAGCAGCTTTCATTTGTAAATACGTTGTGTGTT
1 CTGCAACACTGGTGGTTCATCCACCGATTATCTAGCAGCTTTCATTTACAAATACGTTGTGCATT
**
95332660 CACAACCATCTGGCAACGTATTAAC
66 CACAACCATCTAACAACGTATTAAC
95332685 CTGCAACACTGGTGGTTCATCCACC
1 CTGCAACACTGGTGGTTCATCCACC
95332710 CACATTCCGA
Statistics
Matches: 96, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
90 96 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (90 bp):
CTGCAACACTGGTGGTTCATCCACCGATTATCTAGCAGCTTTCATTTACAAATACGTTGTGCATT
CACAACCATCTAACAACGTATTAAC
Found at i:95332724 original size:90 final size:90
Alignment explanation
Indices: 95332588--95332780 Score: 262
Period size: 90 Copynumber: 2.1 Consensus size: 90
95332578 TCTAATAGCT
* * * * *
95332588 TATTAACCTGCAACACTGGTGGTTCATCCACCGATTTTCTAGCAGCTTTCATTTGTAAATACGTT
1 TATTAACCTGCAACACTGGTGGTTCATCCACCCAATTCCGAGCAGCTCTCATTTGTAAATACGTT
* *** *
95332653 GTGTGTTCACAACCATCTGGCAACG
66 ATACATTCACAACCATCTGGCAACA
*
95332678 TATTAACCTGCAACACTGGTGGTTCATCCACCCACATTCCGA-CAGCTCTCATTTGTAAATATGT
1 TATTAACCTGCAACACTGGTGGTTCATCCACCCA-ATTCCGAGCAGCTCTCATTTGTAAATACGT
*
95332742 TATACATTCACAACCATCTGGCAGCA
65 TATACATTCACAACCATCTGGCAACA
95332768 TATTAACCTGCAA
1 TATTAACCTGCAA
95332781 TTTTTATGGT
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
90 86 0.96
91 4 0.04
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (90 bp):
TATTAACCTGCAACACTGGTGGTTCATCCACCCAATTCCGAGCAGCTCTCATTTGTAAATACGTT
ATACATTCACAACCATCTGGCAACA
Found at i:95333558 original size:22 final size:23
Alignment explanation
Indices: 95333515--95333558 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
95333505 AGCTCATGGG
*
95333515 TTCTTTTAAAAATAGACTAAATT
1 TTCTTTTAAAAATAAACTAAATT
*
95333538 TTCTTTTAAAAGTAAAC-AAAT
1 TTCTTTTAAAAATAAACTAAAT
95333559 GTTTTAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (23 bp):
TTCTTTTAAAAATAAACTAAATT
Found at i:95334516 original size:13 final size:12
Alignment explanation
Indices: 95334495--95334530 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
95334485 TATGTATAAA
95334495 TTAATTTTAACTT
1 TTAATTTTAAC-T
*
95334508 TTAACTTTAACT
1 TTAATTTTAACT
95334520 TTAATTTTAAC
1 TTAATTTTAAC
95334531 CATTCATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (12 bp):
TTAATTTTAACT
Found at i:95338093 original size:8 final size:8
Alignment explanation
Indices: 95338080--95338110 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
95338070 CAAGTTATAA
95338080 CAAAATAT
1 CAAAATAT
*
95338088 CAAAATAA
1 CAAAATAT
95338096 CAAAATAT
1 CAAAATAT
95338104 CAAAATA
1 CAAAATA
95338111 AAAGTAGTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.68, C:0.13, G:0.00, T:0.19
Consensus pattern (8 bp):
CAAAATAT
Found at i:95338097 original size:16 final size:16
Alignment explanation
Indices: 95338076--95338111 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
95338066 ATATCAAGTT
95338076 ATAACAAAATATCAAA
1 ATAACAAAATATCAAA
95338092 ATAACAAAATATCAAA
1 ATAACAAAATATCAAA
95338108 ATAA
1 ATAA
95338112 AAGTAGTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.69, C:0.11, G:0.00, T:0.19
Consensus pattern (16 bp):
ATAACAAAATATCAAA
Found at i:95341213 original size:18 final size:17
Alignment explanation
Indices: 95341166--95341227 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 17
95341156 CCTATAAATT
95341166 TTTTAAAATTTATATT-
1 TTTTAAAATTTATATTA
95341182 TTTTAATTTTAATTTATTATTA
1 TTTTAA----AATTTA-TATTA
*
95341204 TTTTAAAATTAAATATTA
1 TTTTAAAATT-TATATTA
95341222 TTTTAA
1 TTTTAA
95341228 TTATTTTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
16 6 0.16
18 15 0.39
19 1 0.03
20 6 0.16
21 4 0.11
22 6 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTAAAATTTATATTA
Found at i:95349464 original size:18 final size:18
Alignment explanation
Indices: 95349443--95349477 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
95349433 CTTTTTCGTC
*
95349443 ATTTGTTTTGGGTTTATG
1 ATTTATTTTGGGTTTATG
95349461 ATTTATTTTGGGTTTAT
1 ATTTATTTTGGGTTTAT
95349478 ACATATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.23, T:0.63
Consensus pattern (18 bp):
ATTTATTTTGGGTTTATG
Found at i:95349583 original size:7 final size:7
Alignment explanation
Indices: 95349567--95349605 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
95349557 TGAACAGTTT
*
95349567 TTTAAGG
1 TTTAATG
95349574 TTTAATG
1 TTTAATG
95349581 TTTAATG
1 TTTAATG
*
95349588 -TTAAGG
1 TTTAATG
95349594 TTTAATG
1 TTTAATG
95349601 TTTAA
1 TTTAA
95349606 AAATTTTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (7 bp):
TTTAATG
Found at i:95349591 original size:20 final size:20
Alignment explanation
Indices: 95349568--95349605 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
95349558 GAACAGTTTT
95349568 TTAAGGTTTAATGTTTAATG
1 TTAAGGTTTAATGTTTAATG
95349588 TTAAGGTTTAATGTTTAA
1 TTAAGGTTTAATGTTTAA
95349606 AAATTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (20 bp):
TTAAGGTTTAATGTTTAATG
Found at i:95349841 original size:89 final size:88
Alignment explanation
Indices: 95349739--95349915 Score: 327
Period size: 89 Copynumber: 2.0 Consensus size: 88
95349729 AATGTTTAAA
*
95349739 AATTTTAATTAATTAAATTTATTTAATTAAAAATCTATTTTTATCCCCATTTGAAAATTTAAGTT
1 AATTTTAATTAATTAAATTTATTTAATTAAAAATCTATTTTCATCCCCATTTGAAAATTTAAGTT
95349804 AGACACTTAAAATCTAGATGGACT
66 -GACACTTAAAATCTAGATGGACT
95349828 AATTTTAATTAATTAAATTTATTTAATTAAAAATCTATTTTCATCCCCATTTGAAAATTTAAGTT
1 AATTTTAATTAATTAAATTTATTTAATTAAAAATCTATTTTCATCCCCATTTGAAAATTTAAGTT
*
95349893 GACACTTAAAATCTAGTTGGACT
66 GACACTTAAAATCTAGATGGACT
95349916 GCCACATAAT
Statistics
Matches: 86, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
88 22 0.26
89 64 0.74
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.43
Consensus pattern (88 bp):
AATTTTAATTAATTAAATTTATTTAATTAAAAATCTATTTTCATCCCCATTTGAAAATTTAAGTT
GACACTTAAAATCTAGATGGACT
Found at i:95351478 original size:22 final size:22
Alignment explanation
Indices: 95351453--95351494 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
95351443 ATTATAGGTT
* *
95351453 AATATTAATATGTTTATTAATG
1 AATATAAATATATTTATTAATG
*
95351475 AATATAAATATATTTTTTAA
1 AATATAAATATATTTATTAA
95351495 CAATTTCTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (22 bp):
AATATAAATATATTTATTAATG
Found at i:95351569 original size:16 final size:17
Alignment explanation
Indices: 95351544--95351576 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
95351534 AATTTTAATT
*
95351544 TATAATATATTATTTCA
1 TATAATATATAATTTCA
95351561 TATAA-ATATAATTTCA
1 TATAATATATAATTTCA
95351577 ATCATTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (17 bp):
TATAATATATAATTTCA
Found at i:95352593 original size:21 final size:21
Alignment explanation
Indices: 95352567--95352607 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
95352557 ACGTCAGCAA
*
95352567 TGTAACACCGCTAACCCGTAT
1 TGTAACACCCCTAACCCGTAT
*
95352588 TGTAACACCCCTATCCCGTA
1 TGTAACACCCCTAACCCGTA
95352608 ACCATTGTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.37, G:0.12, T:0.24
Consensus pattern (21 bp):
TGTAACACCCCTAACCCGTAT
Found at i:95357494 original size:46 final size:46
Alignment explanation
Indices: 95357465--95357666 Score: 273
Period size: 46 Copynumber: 4.4 Consensus size: 46
95357455 TCTTACTAAT
* * *
95357465 TTTC-TGTCATGTTGCCATGGTATTTTTCAACTATGGTCTTATTCA
1 TTTCTTGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
*
95357510 TTTCTTGTCACGTTGTCATGGTATCTTTCAACCATGGTCTTATTCA
1 TTTCTTGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
* *
95357556 TTTCTTGTCACGTTGCCATGGTATCTTTCACCCATGGTCTTATTTA
1 TTTCTTGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
* * * * *
95357602 TTTCCTGTCATGTAGCCATGATATTTTTCAACCATGGTCTTATTCA
1 TTTCTTGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
*
95357648 TTTCTCGTCA-GATTGCCAT
1 TTTCTTGTCACG-TTGCCAT
95357667 AGTCCAACTA
Statistics
Matches: 138, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
45 5 0.04
46 133 0.96
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.46
Consensus pattern (46 bp):
TTTCTTGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
Found at i:95357731 original size:33 final size:33
Alignment explanation
Indices: 95357676--95357810 Score: 78
Period size: 33 Copynumber: 4.1 Consensus size: 33
95357666 TAGTCCAACT
* *
95357676 ATGGTCTTACACGTATATTGCCATGGCCCAGCC
1 ATGGTCTTACACATATAGTGCCATGGCCCAGCC
* ** * **
95357709 ATGGTCTTACAC-TCATGGTGCCATATCTCAGAT
1 ATGGTCTTACACAT-ATAGTGCCATGGCCCAGCC
* * * * * *
95357742 ATGGTATTA-TCATCA-GGATGCCATTGCCTAGCT
1 ATGGTCTTACACAT-ATAG-TGCCATGGCCCAGCC
* *
95357775 ATGGTCTTACACATATATTGCCATGGCCCAACC
1 ATGGTCTTACACATATAGTGCCATGGCCCAGCC
95357808 ATG
1 ATG
95357811 TTTTTATCCG
Statistics
Matches: 75, Mismatches: 22, Indels: 10
0.70 0.21 0.09
Matches are distributed among these distances:
32 4 0.05
33 68 0.91
34 3 0.04
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (33 bp):
ATGGTCTTACACATATAGTGCCATGGCCCAGCC
Found at i:95359348 original size:14 final size:14
Alignment explanation
Indices: 95359331--95359357 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
95359321 ATGGGAAAAA
95359331 GATTATGGCTCTTT
1 GATTATGGCTCTTT
95359345 GATTATGGCTCTT
1 GATTATGGCTCTT
95359358 CATCTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.48
Consensus pattern (14 bp):
GATTATGGCTCTTT
Found at i:95370329 original size:20 final size:20
Alignment explanation
Indices: 95370304--95370343 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
95370294 AACAGAAGAT
95370304 AACAACCCTAACAGACTTAA
1 AACAACCCTAACAGACTTAA
*
95370324 AACAACCCTATCAGACTTAA
1 AACAACCCTAACAGACTTAA
95370344 TTGATCTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.30, G:0.05, T:0.17
Consensus pattern (20 bp):
AACAACCCTAACAGACTTAA
Found at i:95376863 original size:15 final size:16
Alignment explanation
Indices: 95376825--95376861 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
95376815 TAATGAAACT
*
95376825 TAAAAAAT-AATGATA
1 TAAAAAATAAATAATA
95376840 TAAAAAATAAATAATA
1 TAAAAAATAAATAATA
95376856 TAAAAA
1 TAAAAA
95376862 TATGAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (16 bp):
TAAAAAATAAATAATA
Found at i:95376864 original size:24 final size:24
Alignment explanation
Indices: 95376837--95376895 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 24
95376827 AAAAATAATG
95376837 ATATAAAAAATAAATA-ATATAAAA
1 ATATAAAAAATAAATATAT-TAAAA
* * * *
95376861 ATATGAAATATAGATATATTAAAT
1 ATATAAAAAATAAATATATTAAAA
*
95376885 CTATAAAAAAT
1 ATATAAAAAAT
95376896 CTATAAATAT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
24 25 0.93
25 2 0.07
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (24 bp):
ATATAAAAAATAAATATATTAAAA
Found at i:95383027 original size:26 final size:26
Alignment explanation
Indices: 95382988--95383095 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
95382978 TGGTACAAAT
*
95382988 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
95383014 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95383040 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
95383066 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95383092 TGAT
1 TGAT
95383096 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:95390075 original size:26 final size:26
Alignment explanation
Indices: 95390046--95390153 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
95390036 TGGTACAAAT
95390046 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
95390072 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95390098 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
95390124 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95390150 TGAT
1 TGAT
95390154 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:95391656 original size:26 final size:26
Alignment explanation
Indices: 95391627--95391679 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
95391617 TTTACAGTTT
95391627 TACCCCTAGTGGATAAATT-ACCGAAA
1 TACCCCTAG-GGATAAATTGACCGAAA
* *
95391653 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
95391679 T
1 T
95391680 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:95395372 original size:26 final size:26
Alignment explanation
Indices: 95395343--95395393 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
95395333 TGATATTGGA
95395343 TGAGTAAAGCCCAACACATGAAGACT
1 TGAGTAAAGCCCAACACATGAAGACT
95395369 TGAGTAAAGCCCAACACATGAAGAC
1 TGAGTAAAGCCCAACACATGAAGAC
95395394 GAAGTGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.43, C:0.24, G:0.20, T:0.14
Consensus pattern (26 bp):
TGAGTAAAGCCCAACACATGAAGACT
Found at i:95412551 original size:13 final size:13
Alignment explanation
Indices: 95412533--95412560 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
95412523 CCTTAGTAAG
95412533 TAGTTAATTAGTT
1 TAGTTAATTAGTT
95412546 TAGTTAATTAGTT
1 TAGTTAATTAGTT
95412559 TA
1 TA
95412561 ATAAACGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (13 bp):
TAGTTAATTAGTT
Found at i:95416324 original size:49 final size:49
Alignment explanation
Indices: 95416252--95416426 Score: 251
Period size: 49 Copynumber: 3.5 Consensus size: 49
95416242 TGAGGTCACG
95416252 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * ** * * * *
95416301 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCGCA
*
95416352 TGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
95416401 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
95416427 TGCGTACCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 65 0.61
50 2 0.02
51 39 0.37
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:95416420 original size:100 final size:100
Alignment explanation
Indices: 95416247--95416445 Score: 371
Period size: 100 Copynumber: 2.0 Consensus size: 100
95416237 TATTGTGAGG
95416247 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
95416312 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
*
95416347 TCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
* *
95416412 AAGTGCAGGCTACTATGCGTACCCGAAAAGTGTG
66 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTG
95416446 GAAATGGGAA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 96 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
Found at i:95420734 original size:46 final size:46
Alignment explanation
Indices: 95420682--95420940 Score: 367
Period size: 46 Copynumber: 5.6 Consensus size: 46
95420672 GTGCTCTCTT
** *
95420682 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
95420728 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* **
95420774 ATAAGAAATGAATAAGACCATGGTTGAAAGATATGATGGCAACATG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* * * *
95420820 ACAGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
*
95420866 ACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
95420912 ATA-GAAAATGAGTAAGACCATAGTTGAAA
1 ATATG-AAATGAATAAGACCATGGTTGAAA
95420941 AACACTATGG
Statistics
Matches: 193, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 192 0.99
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (46 bp):
ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
Found at i:95420951 original size:138 final size:138
Alignment explanation
Indices: 95420694--95420952 Score: 405
Period size: 138 Copynumber: 1.9 Consensus size: 138
95420684 ATGAAATGTG
* *
95420694 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAGA
* * * *
95420759 TACCATGGCAACGTGATAAGAAATGAATAAGACCATGGTTGAAAGATATGATGGCAACATGACAG
66 TACCATGGCAACATGATAAGAAATGAATAAGACCATAGTTGAAAAACATGATGGCAACATGACAG
95420824 GAAATGAA
131 GAAATGAA
* *
95420832 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAGA
*
95420897 TACCATGGCAACATGAT-AGAAAATGAGTAAGACCATAGTTGAAAAACACT-ATGGCA
66 TACCATGGCAACATGATAAG-AAATGAATAAGACCATAGTTGAAAAACA-TGATGGCA
95420953 TCTTGTCAAA
Statistics
Matches: 110, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
137 2 0.02
138 107 0.97
139 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGATAAGAAATGAATAAGACCATAGTTGAAAAACATGATGGCAACATGACAG
GAAATGAA
Found at i:95421258 original size:16 final size:17
Alignment explanation
Indices: 95421237--95421269 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
95421227 ATGATGGTGC
95421237 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
95421253 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
95421270 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:95424032 original size:6 final size:6
Alignment explanation
Indices: 95424016--95424081 Score: 125
Period size: 6 Copynumber: 11.2 Consensus size: 6
95424006 TCCTCCTATC
95424016 TTTTA- TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
95424063 TTTTAT TTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT T
95424082 ATTTTCTTTT
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 5 0.08
6 55 0.92
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:95430441 original size:25 final size:25
Alignment explanation
Indices: 95430394--95430442 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
95430384 CTGTTTTTGA
* *
95430394 TAGTATATCCTGAAACTGCTATAGG
1 TAGTATATACTGAAACTACTATAGG
* *
95430419 TAGTATATACTGAGACTATTATAG
1 TAGTATATACTGAAACTACTATAG
95430443 ATAGACTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:95436743 original size:13 final size:13
Alignment explanation
Indices: 95436725--95436765 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
95436715 CTGGACTTCC
95436725 TCACACGGGCGTG
1 TCACACGGGCGTG
95436738 TCACACGGGCGTG
1 TCACACGGGCGTG
*
95436751 TCACACGGCCGTG
1 TCACACGGGCGTG
95436764 TC
1 TC
95436766 TATTTGGCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.15, C:0.34, G:0.34, T:0.17
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:95443905 original size:20 final size:20
Alignment explanation
Indices: 95443866--95443906 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
95443856 AATGTAAGTA
* **
95443866 AAGTTACGGTTTTCCGACAC
1 AAGTTACGATTTTCAAACAC
95443886 AAGTTACGATTTTCAAACAC
1 AAGTTACGATTTTCAAACAC
95443906 A
1 A
95443907 TTAACATGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (20 bp):
AAGTTACGATTTTCAAACAC
Found at i:95447040 original size:33 final size:33
Alignment explanation
Indices: 95446985--95447110 Score: 135
Period size: 33 Copynumber: 3.8 Consensus size: 33
95446975 CATGGCATCC
* * *
95446985 ACAGAAATAGTCTGCTGCGACAGTAAACATAGA
1 ACAGAGATAGTCCGCTGGGACAGTAAACATAGA
* *
95447018 ATAGAGATAGTCCGTTGGGACAGTAAACATAGA
1 ACAGAGATAGTCCGCTGGGACAGTAAACATAGA
* * * *
95447051 ACAGAGATAGTCTGCTGGGACAGTAAATACATA
1 ACAGAGATAGTCCGCTGGGACAGTAAACATAGA
* ** *
95447084 ACAAAGATAGTCTACTGGGATAGTAAA
1 ACAGAGATAGTCCGCTGGGACAGTAAA
95447111 TGAAAAACAA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 79 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (33 bp):
ACAGAGATAGTCCGCTGGGACAGTAAACATAGA
Found at i:95447103 original size:66 final size:66
Alignment explanation
Indices: 95446985--95447110 Score: 153
Period size: 66 Copynumber: 1.9 Consensus size: 66
95446975 CATGGCATCC
* * * **
95446985 ACAGAAATAGTCTGCTGCGACAGTAAACATAGAATAGAGATAGTCCGTTGGGACAGTAAACATAG
1 ACAGAAATAGTCTGCTGCGACAGTAAACACAGAACAAAGATAGTCCACTGGGACAGTAAACATAG
95447050 A
66 A
* * * * * *
95447051 ACAGAGATAGTCTGCTGGGACAGTAAATACATAACAAAGATAGTCTACTGGGATAGTAAA
1 ACAGAAATAGTCTGCTGCGACAGTAAACACAGAACAAAGATAGTCCACTGGGACAGTAAA
95447111 TGAAAAACAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
66 49 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (66 bp):
ACAGAAATAGTCTGCTGCGACAGTAAACACAGAACAAAGATAGTCCACTGGGACAGTAAACATAG
A
Found at i:95447111 original size:33 final size:33
Alignment explanation
Indices: 95447033--95447125 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 33
95447023 GATAGTCCGT
* * * *
95447033 TGGGACAGTAAA-CATAGAACAGAGATAGTCTGC
1 TGGGACAGTAAATGA-AAAACAAAGATAGTCTAC
*
95447066 TGGGACAGTAAAT-ACATAACAAAGATAGTCTAC
1 TGGGACAGTAAATGA-AAAACAAAGATAGTCTAC
*
95447099 TGGGATAGTAAATGAAAAACAAAGATA
1 TGGGACAGTAAATGAAAAACAAAGATA
95447126 ATCAGTTGAG
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
33 51 0.98
34 1 0.02
ACGTcount: A:0.46, C:0.12, G:0.23, T:0.19
Consensus pattern (33 bp):
TGGGACAGTAAATGAAAAACAAAGATAGTCTAC
Found at i:95451376 original size:16 final size:16
Alignment explanation
Indices: 95451355--95451395 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
95451345 TGTTTTGAAT
*
95451355 ATAGTTATTCTAAATA
1 ATAGTTATTCCAAATA
*
95451371 ATAGTTGTTCCAAATA
1 ATAGTTATTCCAAATA
*
95451387 ATAATTATT
1 ATAGTTATT
95451396 TTCAATAGAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (16 bp):
ATAGTTATTCCAAATA
Found at i:95451554 original size:3 final size:3
Alignment explanation
Indices: 95451540--95451577 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
95451530 ATGGTGTATC
* *
95451540 TAT TAT TGT TAT TAT TGT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
95451578 ACGTCTTGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:95458834 original size:23 final size:26
Alignment explanation
Indices: 95458795--95458841 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
95458785 TTATTTTCAC
95458795 TTTTAAAATTTTTTAAT-AATTTATA
1 TTTTAAAATTTTTTAATAAATTTATA
95458820 TTTT-AAA-TTTTTAATAAATTTA
1 TTTTAAAATTTTTTAATAAATTTA
95458842 ATGCAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.38
24 9 0.43
25 4 0.19
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
TTTTAAAATTTTTTAATAAATTTATA
Found at i:95462473 original size:37 final size:37
Alignment explanation
Indices: 95462432--95462506 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
95462422 CCTTTAATAT
95462432 TAGGCTATGACATGTACATAGGTTAAATCAAAGTTTA
1 TAGGCTATGACATGTACATAGGTTAAATCAAAGTTTA
95462469 TAGGCTATGACATGTACATAGGTTAAATCAAAGTTTA
1 TAGGCTATGACATGTACATAGGTTAAATCAAAGTTTA
95462506 T
1 T
95462507 GTACAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (37 bp):
TAGGCTATGACATGTACATAGGTTAAATCAAAGTTTA
Found at i:95465965 original size:17 final size:18
Alignment explanation
Indices: 95465930--95465967 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
95465920 TACTAATTAT
95465930 ATAAGTATCTCATGTATC
1 ATAAGTATCTCATGTATC
95465948 ATAA-TATC-CATGTAATC
1 ATAAGTATCTCATGT-ATC
95465965 ATA
1 ATA
95465968 TAATTCATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.26
17 10 0.53
18 4 0.21
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (18 bp):
ATAAGTATCTCATGTATC
Found at i:95465976 original size:17 final size:17
Alignment explanation
Indices: 95465939--95465984 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
95465929 TATAAGTATC
95465939 TCATGT-ATCATAATAT
1 TCATGTAATCATAATAT
*
95465955 CCATGTAATCAT-ATAAT
1 TCATGTAATCATAAT-AT
95465972 TCATGTAAATCAT
1 TCATGT-AATCAT
95465985 GTATCTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 7 0.28
17 12 0.48
18 6 0.24
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (17 bp):
TCATGTAATCATAATAT
Found at i:95466000 original size:25 final size:26
Alignment explanation
Indices: 95465956--95466009 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
95465946 TCATAATATC
95465956 CATGTAATCATATAATTCATGTAAAT
1 CATGTAATCATATAATTCATGTAAAT
*
95465982 CATGT-ATCTTATAATTCATGTAAAT
1 CATGTAATCATATAATTCATGTAAAT
95466007 CAT
1 CAT
95466010 ATAGCTCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 22 0.81
26 5 0.19
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (26 bp):
CATGTAATCATATAATTCATGTAAAT
Found at i:95466025 original size:25 final size:25
Alignment explanation
Indices: 95465966--95466021 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
95465956 CATGTAATCA
*
95465966 TATAATTCATGTAAATCATGTATCT
1 TATAATTCATGTAAATCATATATCT
95465991 TATAATTCATGTAAATCATATAGCTCT
1 TATAATTCATGTAAATCATATA--TCT
95466018 TATA
1 TATA
95466022 TCATATGATC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 21 0.75
27 7 0.25
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (25 bp):
TATAATTCATGTAAATCATATATCT
Found at i:95466241 original size:29 final size:29
Alignment explanation
Indices: 95466186--95466242 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
95466176 CTGAGATGAT
* * *
95466186 AAACGGTAAGCTCCGTAGAGTTAAAACAA
1 AAACGGTAAGCCCCGAAGAGCTAAAACAA
*
95466215 AAACGGTAAGCCCCGAAGAGCTGAAACA
1 AAACGGTAAGCCCCGAAGAGCTAAAACA
95466243 GTAAGCTCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (29 bp):
AAACGGTAAGCCCCGAAGAGCTAAAACAA
Found at i:95466687 original size:94 final size:94
Alignment explanation
Indices: 95466565--95466752 Score: 358
Period size: 94 Copynumber: 2.0 Consensus size: 94
95466555 TTATCTTGGT
95466565 CTATATATTAAAAAATTCAAAATTTTTAGTAACCATTTAATTCAATTCGCACATACTTTCAAAAT
1 CTATATATTAAAAAATTCAAAATTTTTAGTAACCATTTAATTCAATTCGCACATACTTTCAAAAT
*
95466630 TATACATTTGCCCCTATACTTTTGACTAC
66 TATACATTTGCCCCTATACCTTTGACTAC
*
95466659 CTATATATTAAAAAATTCAAAATTTTTAGTAACCATTTAATTCAATTCGCACATACTTTCCAAAT
1 CTATATATTAAAAAATTCAAAATTTTTAGTAACCATTTAATTCAATTCGCACATACTTTCAAAAT
95466724 TATACATTTGCCCCTATACCTTTGACTAC
66 TATACATTTGCCCCTATACCTTTGACTAC
95466753 TTTGCAATTT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.37, C:0.20, G:0.04, T:0.39
Consensus pattern (94 bp):
CTATATATTAAAAAATTCAAAATTTTTAGTAACCATTTAATTCAATTCGCACATACTTTCAAAAT
TATACATTTGCCCCTATACCTTTGACTAC
Found at i:95469372 original size:201 final size:201
Alignment explanation
Indices: 95468983--95469391 Score: 757
Period size: 201 Copynumber: 2.0 Consensus size: 201
95468973 ATTGTCTTAA
*
95468983 TCAATCAAATTCTCCCAAAAGTATTTTCTCAAATTTTCTTTCTGTGCATTCTTAGTTTAGTAATT
1 TCAATCGAATTCTCCCAAAAGTATTTTCTCAAATTTTCTTTCTGTGCATTCTTAGTTTAGTAATT
95469048 AGTTTAAATAACCAAACCACTTAATTTTTTTAGGCTAGATAATAAAAAGGAAGTAAATACTAGTA
66 AGTTTAAATAACCAAACCACTTAATTTTTTTAGGCTAGATAATAAAAAGGAAGTAAATACTAGTA
* *
95469113 CTCCTGGTTCCCTTGGGTTCGACAATCCGGTCTTGCTGAACTATATTACTGTTTCGATAGGTACA
131 CTCCTGGTTCCCTTAGGTTCGACAATCCGGTCTTGCTGAACTATACTACTGTTTCGATAGGTACA
95469178 CTTGCC
196 CTTGCC
95469184 TCAATCGAATTCTCCCAAAAGTATTTTCTCAAATTTTCTTTCTGTGCATTCTTAGTTTAGTAATT
1 TCAATCGAATTCTCCCAAAAGTATTTTCTCAAATTTTCTTTCTGTGCATTCTTAGTTTAGTAATT
95469249 AGTTTAAATAACCAAACCACTTAATTTTTTTTAGGCTAGATAATAAAAAGGAAGTAAATACTAGT
66 AGTTTAAATAACCAAACCACTTAA-TTTTTTTAGGCTAGATAATAAAAAGGAAGTAAATACTAGT
*
95469314 ACTCGTGGTTCCCTTAGGTTCGACAATCCGGTCTTGCTGAACTATACTACTG-TTCGATAGGTAC
130 ACTCCTGGTTCCCTTAGGTTCGACAATCCGGTCTTGCTGAACTATACTACTGTTTCGATAGGTAC
95469378 ACTTGCC
195 ACTTGCC
*
95469385 TTAATCG
1 TCAATCG
95469392 TGATAATAAG
Statistics
Matches: 202, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
201 113 0.56
202 89 0.44
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (201 bp):
TCAATCGAATTCTCCCAAAAGTATTTTCTCAAATTTTCTTTCTGTGCATTCTTAGTTTAGTAATT
AGTTTAAATAACCAAACCACTTAATTTTTTTAGGCTAGATAATAAAAAGGAAGTAAATACTAGTA
CTCCTGGTTCCCTTAGGTTCGACAATCCGGTCTTGCTGAACTATACTACTGTTTCGATAGGTACA
CTTGCC
Found at i:95487541 original size:12 final size:12
Alignment explanation
Indices: 95487521--95487555 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
95487511 CCATTGTTTA
95487521 ACCAAATATTGC
1 ACCAAATATTGC
*
95487533 ACCATATATTGC
1 ACCAAATATTGC
95487545 ATCCAAATATT
1 A-CCAAATATT
95487556 TTCACAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (12 bp):
ACCAAATATTGC
Found at i:95487955 original size:21 final size:23
Alignment explanation
Indices: 95487912--95487957 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
95487902 AATTTAGGGG
95487912 TTTAATTTTATTTTTCAACTCGAC
1 TTTAATTTTA-TTTTCAACTCGAC
95487936 TTTAATTTTA-TTTC-ACTCGAC
1 TTTAATTTTATTTTCAACTCGAC
95487957 T
1 T
95487958 CGATTCAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.36
22 4 0.18
24 10 0.45
ACGTcount: A:0.24, C:0.17, G:0.04, T:0.54
Consensus pattern (23 bp):
TTTAATTTTATTTTCAACTCGAC
Found at i:95492164 original size:38 final size:38
Alignment explanation
Indices: 95492113--95492191 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
95492103 ATCACAAATT
95492113 ACTTAATGAATATAATTTAACTAGTGATTAGGAAATCA
1 ACTTAATGAATATAATTTAACTAGTGATTAGGAAATCA
95492151 ACTTAATGAATATAATTTAACTAGTGATTAGGAAATCA
1 ACTTAATGAATATAATTTAACTAGTGATTAGGAAATCA
95492189 ACT
1 ACT
95492192 AACATAGATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (38 bp):
ACTTAATGAATATAATTTAACTAGTGATTAGGAAATCA
Found at i:95492172 original size:19 final size:19
Alignment explanation
Indices: 95492113--95492172 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
95492103 ATCACAAATT
95492113 ACTTAATGAATATAATTTA
1 ACTTAATGAATATAATTTA
* * * * *
95492132 AC-TAGTGATTAGGAAATCA
1 ACTTAATGAATA-TAATTTA
95492151 ACTTAATGAATATAATTTA
1 ACTTAATGAATATAATTTA
95492170 ACT
1 ACT
95492173 AGTGATTAGG
Statistics
Matches: 29, Mismatches: 10, Indels: 4
0.67 0.23 0.09
Matches are distributed among these distances:
18 7 0.24
19 15 0.52
20 7 0.24
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (19 bp):
ACTTAATGAATATAATTTA
Found at i:95492191 original size:19 final size:19
Alignment explanation
Indices: 95492131--95492192 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
95492121 AATATAATTT
95492131 AACTAGTGATTAGGAAATC
1 AACTAGTGATTAGGAAATC
* * * * *
95492150 AACTTAATGAATA-TAATTT
1 AAC-TAGTGATTAGGAAATC
95492169 AACTAGTGATTAGGAAATC
1 AACTAGTGATTAGGAAATC
95492188 AACTA
1 AACTA
95492193 ACATAGATAA
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
18 7 0.23
19 17 0.55
20 7 0.23
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.31
Consensus pattern (19 bp):
AACTAGTGATTAGGAAATC
Found at i:95492349 original size:95 final size:95
Alignment explanation
Indices: 95492183--95492419 Score: 226
Period size: 95 Copynumber: 2.5 Consensus size: 95
95492173 AGTGATTAGG
* * * ** * * * ** *
95492183 AAATCAACTAACATAGATAAGATTTTTCATGATAG-TAAATCAAATGAACTTATGCTACAATCTT
1 AAATCACCTAACTTAAATAAGATTGCTCATGAT-GTTAAATCGAATGAACATAGGCCGCGATCTT
* * *
95492247 AAGTCAGTGAGCCA-TTTCAAGCAGCAATGTT
65 AAATCAGTGA-ACAGTTTCAAGCAGCAATATT
* ** * * *
95492278 GAATCAGTTAACTTAAATAAGTTTGTTCATGATGTTAAATTGAATGAACATAGGCCGCGATCTTA
1 AAATCACCTAACTTAAATAAGATTGCTCATGATGTTAAATCGAATGAACATAGGCCGCGATCTTA
** *
95492343 AATCAGTGAACAGTTTGGAGCAGCGATATT
66 AATCAGTGAACAGTTTCAAGCAGCAATATT
*
95492373 AAATCACCTAACTTAGATAAGATTGCTCATGATGTTAAATCGAATGA
1 AAATCACCTAACTTAAATAAGATTGCTCATGATGTTAAATCGAATGA
95492420 GCTTAGGTTG
Statistics
Matches: 113, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
94 3 0.03
95 110 0.97
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (95 bp):
AAATCACCTAACTTAAATAAGATTGCTCATGATGTTAAATCGAATGAACATAGGCCGCGATCTTA
AATCAGTGAACAGTTTCAAGCAGCAATATT
Found at i:95494449 original size:10 final size:10
Alignment explanation
Indices: 95494434--95494468 Score: 70
Period size: 10 Copynumber: 3.5 Consensus size: 10
95494424 CCATAATTTA
95494434 TGATACAAAT
1 TGATACAAAT
95494444 TGATACAAAT
1 TGATACAAAT
95494454 TGATACAAAT
1 TGATACAAAT
95494464 TGATA
1 TGATA
95494469 ATGGGTTAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (10 bp):
TGATACAAAT
Found at i:95494503 original size:26 final size:26
Alignment explanation
Indices: 95494464--95494568 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
95494454 TGATACAAAT
95494464 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
95494490 TGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
95494516 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
95494542 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95494568 T
1 T
95494569 TGTGGGAATT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:95496085 original size:25 final size:26
Alignment explanation
Indices: 95496057--95496108 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
95496047 TTTACAGTTT
95496057 TACCC-TAGGAGATAAATT-ACCGAAA
1 TACCCATAGG-GATAAATTGACCGAAA
* *
95496082 TACCCATAGGGTTAAATTGACCTAAA
1 TACCCATAGGGATAAATTGACCGAAA
95496108 T
1 T
95496109 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCATAGGGATAAATTGACCGAAA
Found at i:95500277 original size:22 final size:22
Alignment explanation
Indices: 95500251--95500296 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
95500241 AATTATTTGG
*
95500251 ATTGATAAAATTGTATTATGAA
1 ATTGAGAAAATTGTATTATGAA
* *
95500273 ATTGAGGAAATTGTTTTATGAA
1 ATTGAGAAAATTGTATTATGAA
95500295 AT
1 AT
95500297 GAACTAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (22 bp):
ATTGAGAAAATTGTATTATGAA
Found at i:95515776 original size:17 final size:18
Alignment explanation
Indices: 95515745--95515778 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
95515735 TATAAAGAAG
*
95515745 AATAATTATATAAAAATA
1 AATAATTATAAAAAAATA
95515763 AATAA-TATAAAAAAAT
1 AATAATTATAAAAAAAT
95515779 CAACATTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AATAATTATAAAAAAATA
Found at i:95524378 original size:19 final size:19
Alignment explanation
Indices: 95524333--95524393 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
95524323 ATCTAATTAC
95524333 AAATATTTAATTATTATATTT
1 AAATATTTAATTA-TA-ATTT
*
95524354 AAATATTTAAATATAATTT
1 AAATATTTAATTATAATTT
*
95524373 ATATATTCTAATTA-AATTT
1 AAATATT-TAATTATAATTT
95524392 AA
1 AA
95524394 TAAATAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.46
20 7 0.20
21 12 0.34
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATATTTAATTATAATTT
Found at i:95524649 original size:13 final size:13
Alignment explanation
Indices: 95524622--95524696 Score: 69
Period size: 13 Copynumber: 5.8 Consensus size: 13
95524612 ACATTTAAAT
* *
95524622 TTTTCCAAAGCAC
1 TTTTCAAAAGTAC
*
95524635 TTCTCAAAAGTAC
1 TTTTCAAAAGTAC
* * *
95524648 TTCTAAAAAGCAC
1 TTTTCAAAAGTAC
* * *
95524661 TTTTCCACATTAC
1 TTTTCAAAAGTAC
95524674 TTTTCAAAAGTAC
1 TTTTCAAAAGTAC
95524687 TTTTCAAAAG
1 TTTTCAAAAG
95524697 CAATGATCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 48 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.35
Consensus pattern (13 bp):
TTTTCAAAAGTAC
Found at i:95528411 original size:57 final size:57
Alignment explanation
Indices: 95528348--95528488 Score: 203
Period size: 57 Copynumber: 2.5 Consensus size: 57
95528338 TAAATTCATG
*
95528348 GATAGAATATGACATTGAGATGAGTTATGTATATTTGATATAAATTTATGGATAGAT
1 GATAGAATATGACATTGAGATGAGTTATGTATATTTGATATAAATTCATGGATAGAT
* * * *
95528405 GATAGAATATGACATTGATATGAGTTATGTGTTTTTGATATAAATTCATGGATTGAT
1 GATAGAATATGACATTGAGATGAGTTATGTATATTTGATATAAATTCATGGATAGAT
* *
95528462 GATA-AATTATAACATTGTGATGAGTTA
1 GATAGAA-TATGACATTGAGATGAGTTA
95528489 AGTGAAATTG
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
56 2 0.03
57 73 0.97
ACGTcount: A:0.37, C:0.03, G:0.21, T:0.40
Consensus pattern (57 bp):
GATAGAATATGACATTGAGATGAGTTATGTATATTTGATATAAATTCATGGATAGAT
Found at i:95540183 original size:25 final size:24
Alignment explanation
Indices: 95540144--95540231 Score: 87
Period size: 22 Copynumber: 3.7 Consensus size: 24
95540134 TAAATCAAAA
95540144 TTAATATTATT-ATATTAAAAATAAGT
1 TTAATATT-TTAATATTAAAAAT-A-T
*
95540170 TTTAT-TTTTAATATTAAAAATAT
1 TTAATATTTTAATATTAAAAATAT
95540193 TTAATATTTTAATA-T-AAAATAT
1 TTAATATTTTAATATTAAAAATAT
*
95540215 TATAAT-TTTCAATATTA
1 T-TAATATTTTAATATTA
95540232 TTAAACATAC
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
22 15 0.28
23 11 0.20
24 11 0.20
25 13 0.24
26 4 0.07
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (24 bp):
TTAATATTTTAATATTAAAAATAT
Found at i:95540188 original size:24 final size:25
Alignment explanation
Indices: 95540144--95540231 Score: 73
Period size: 23 Copynumber: 3.7 Consensus size: 25
95540134 TAAATCAAAA
95540144 TTAATATTATT-ATATTAAAA-ATAAGT
1 TTAATATT-TTAATATTAAAATAT-A-T
*
95540170 TTTAT-TTTTAATATTAAAA-ATAT
1 TTAATATTTTAATATTAAAATATAT
95540193 TTAATATTTTAATA-TAAAATAT-T
1 TTAATATTTTAATATTAAAATATAT
* *
95540216 ATAAT-TTTCAATATTA
1 TTAATATTTTAATATTA
95540232 TTAAACATAC
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
22 7 0.13
23 17 0.31
24 13 0.24
25 13 0.24
26 4 0.07
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (25 bp):
TTAATATTTTAATATTAAAATATAT
Found at i:95543355 original size:6 final size:6
Alignment explanation
Indices: 95543344--95543378 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
95543334 GATAGAGGGA
*
95543344 GGGAGG GGGAGG GGGAGG GGAAGG GGGAGG GGGAG
1 GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG GGGAG
95543379 AGAGAGATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (6 bp):
GGGAGG
Found at i:95543568 original size:9 final size:9
Alignment explanation
Indices: 95543554--95543583 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
95543544 TTATAATTAT
95543554 AAATTTTTG
1 AAATTTTTG
95543563 AAATTTTTG
1 AAATTTTTG
95543572 AAATTTTTG
1 AAATTTTTG
95543581 AAA
1 AAA
95543584 ACATAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (9 bp):
AAATTTTTG
Found at i:95549052 original size:51 final size:51
Alignment explanation
Indices: 95548976--95549078 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
95548966 GGAATTCAAC
95548976 TTCAAATGATCTTGTGAGACCTTTGTTGCACCTCACGTATGTAGGCCGTTA
1 TTCAAATGATCTTGTGAGACCTTTGTTGCACCTCACGTATGTAGGCCGTTA
95549027 TTCAAATGATCTTGTGAGACCTTTGTTGCACCTCACGTATGTAGGCCGTTA
1 TTCAAATGATCTTGTGAGACCTTTGTTGCACCTCACGTATGTAGGCCGTTA
95549078 T
1 T
95549079 ATTTGCAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (51 bp):
TTCAAATGATCTTGTGAGACCTTTGTTGCACCTCACGTATGTAGGCCGTTA
Found at i:95560097 original size:21 final size:21
Alignment explanation
Indices: 95560071--95560125 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
95560061 ACAGCGGTGG
*
95560071 CGGTGAGATTAGTTACTGTAA
1 CGGTGAGATTAGATACTGTAA
*
95560092 CGGTGAGATTAGATACTGTAG
1 CGGTGAGATTAGATACTGTAA
*
95560113 CAGTGAGATTAGA
1 CGGTGAGATTAGA
95560126 AACAATGGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (21 bp):
CGGTGAGATTAGATACTGTAA
Found at i:95561689 original size:41 final size:40
Alignment explanation
Indices: 95561605--95561772 Score: 185
Period size: 41 Copynumber: 4.1 Consensus size: 40
95561595 GCAAAAATTG
* *
95561605 TAAAAACAGAGCAATAGCGGTG-TTTTTGTCAAAACGCCAC
1 TAAAAACAGAGCAATAGCGGCGCTTTTGGT-AAAACGCCAC
* * * *
95561645 TAAAAACTGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-CTTTTGGTAAAACGCCAC
* * * *
95561686 TAAAGACAAGAGCATTAGCGGCGCTTTTGGTAAAACACCGC
1 TAAAAAC-AGAGCAATAGCGGCGCTTTTGGTAAAACGCCAC
* *
95561727 TAAAGACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCAC
1 TAAA-AACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCAC
95561768 TAAAA
1 TAAAA
95561773 GTCATGTGAC
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
40 21 0.19
41 69 0.63
42 19 0.17
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCAC
Found at i:95563059 original size:32 final size:32
Alignment explanation
Indices: 95563013--95563083 Score: 126
Period size: 32 Copynumber: 2.2 Consensus size: 32
95563003 GGTTTACTTA
95563013 AGGA-TTAGACTTTATATATATTAAATGGTTT
1 AGGATTTAGACTTTATATATATTAAATGGTTT
*
95563044 AGGATTTAGGCTTTATATATATTAAATGGTTT
1 AGGATTTAGACTTTATATATATTAAATGGTTT
95563076 AGGATTTA
1 AGGATTTA
95563084 AAGTTAAGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 4 0.11
32 34 0.89
ACGTcount: A:0.34, C:0.03, G:0.18, T:0.45
Consensus pattern (32 bp):
AGGATTTAGACTTTATATATATTAAATGGTTT
Found at i:95563101 original size:32 final size:32
Alignment explanation
Indices: 95563028--95563103 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
95563018 TAGACTTTAT
* * *
95563028 ATATATTAAATGGTTTAGGATTTAGGCTTTAT
1 ATATATTAAATGGTTTAGGATTTAAGCTTAAG
95563060 ATATATTAAATGGTTTAGGATTTAAAG-TTAAG
1 ATATATTAAATGGTTTAGGATTT-AAGCTTAAG
* *
95563092 ATTTGTTAAATG
1 ATATATTAAATG
95563104 ATAAAATTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
32 36 0.95
33 2 0.05
ACGTcount: A:0.36, C:0.01, G:0.18, T:0.45
Consensus pattern (32 bp):
ATATATTAAATGGTTTAGGATTTAAGCTTAAG
Found at i:95563600 original size:14 final size:13
Alignment explanation
Indices: 95563551--95563602 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
95563541 TTAATTTTTT
95563551 TATTTATAAAAACCA
1 TATTTATAAAAA--A
95563566 -ATTTATAAAAAA
1 TATTTATAAAAAA
* *
95563578 TAGTAATAAAAAA
1 TATTTATAAAAAA
95563591 TATTTTATAAAA
1 TA-TTTATAAAA
95563603 TCACTTAACT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 1 0.03
13 12 0.39
14 18 0.58
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (13 bp):
TATTTATAAAAAA
Found at i:95566738 original size:19 final size:18
Alignment explanation
Indices: 95566712--95566750 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
95566702 CATTGATATA
95566712 TTTATATTTAATCTAATT
1 TTTATATTTAATCTAATT
* *
95566730 TTTATTATTTATTTTAATT
1 TTTA-TATTTAATCTAATT
95566749 TT
1 TT
95566751 GATTCTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTATATTTAATCTAATT
Found at i:95566770 original size:20 final size:19
Alignment explanation
Indices: 95566739--95566783 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
95566729 TTTTATTATT
95566739 TATTTTAATTTTGATTCTAAA
1 TATTTTAATTTT-ATT-TAAA
*
95566760 T-TTTTATTTTTATTTAAA
1 TATTTTAATTTTATTTAAA
95566778 TATTTT
1 TATTTT
95566784 TAGTTAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.23
19 7 0.32
20 9 0.41
21 1 0.05
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (19 bp):
TATTTTAATTTTATTTAAA
Done.