Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 29 of 343
Found at i:9895121 original size:720 final size:720
Alignment explanation
Indices: 9893743--9898995 Score: 5598
Period size: 720 Copynumber: 7.0 Consensus size: 720
9893733 TGGCCTCCAT
*
9893743 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTTAGCCCCATTGGACC
1 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
* ** * *
9893808 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCCAGTATTAGCCTCAGTGACCCTCTCTAGG
66 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCTAACATTAGCCTCAATGACCCTCTCCAGG
* *
9893873 ATATGCAGCATGGCCTGGGACAGTGTTTCATCCCTAGCTGGACGGTCCTGGGACTTAGCACCAGT
131 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
* *
9893938 CTCAGTAACAGGTGACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTAACAGATGCGAAGG
196 CTCAGTAACAGGTGACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTATCAAATGCGAAGG
* *
9894003 ACTCAGCTCAAATCCATCTACGGCCTCTAGCACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
261 ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
*
9894068 ATTATTGAATTAATCTATATTTAGAAGATTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
326 ATTATTGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
*
9894133 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGA-TCCAGCTATTGCGAGTAGCAAGCTAACT
391 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGT-CAGCTATCGCGAGTAGCAAGCTAACT
9894197 ACGGTTTTAAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACA
455 ACGGTTTTAAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACA
9894262 AAAAAAAATTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGA
520 AAAAAAAATTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGA
9894327 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATAATTTAAATCGTTTCACAAATC
585 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATAATTTAAATCGTTTCACAAATC
9894392 ATTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCC
650 ATTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCC
9894457 TGGAGC
715 TGGAGC
*
9894463 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCTTGAATACCTCAGCCCCATTGGACC
1 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
*
9894528 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCTAACATTAGCCTCAATGACCCTCTCCAGA
66 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCTAACATTAGCCTCAATGACCCTCTCCAGG
* *
9894593 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCTTAGCTGGACGGTCTTGGGACTCAGCACCAGT
131 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
* * *
9894658 CTCAGTAACAGGTGACATTGGCATCTCGTTAGTGTCCAGATTAGAGATCGTATCAAATGTGAAGG
196 CTCAGTAACAGGTGACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTATCAAATGCGAAGG
*
9894723 ACTCAGCTCAACTCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
261 ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
9894788 ATTATTGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
326 ATTATTGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
*
9894853 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATTGCGAGTAGCAAGCTAACTA
391 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
9894918 CGGTTTTAAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
456 CGGTTTTAAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
*
9894983 AAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGAT
521 AAAAAAATTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGAT
9895048 CAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATAATTTAAATCGTTTCACAAATCA
586 CAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATAATTTAAATCGTTTCACAAATCA
9895113 TTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCT
651 TTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCT
9895178 GGAGC
716 GGAGC
9895183 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
1 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
* *
9895248 AAAGTCATTTCGTAATCGACCCATGGCCTCCAGATCTAACATTAGCCTCAGTGACCCTCTCCAGG
66 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCTAACATTAGCCTCAATGACCCTCTCCAGG
* *
9895313 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACAGTCTTGGGACTCAGCACCAGT
131 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
*
9895378 CTCAGTAACATGTGACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTATCAAATGCGAAGG
196 CTCAGTAACAGGTGACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTATCAAATGCGAAGG
* * *
9895443 ACTCAGCTCAACTCCCTCTACGGCCTCTAGTACCCCGTCAACGAGTACCACTTGTGCTCATCTTA
261 ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
*
9895508 ATTATTGAATTAATTTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
326 ATTATTGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
*
9895573 CAAATATTTTATGTAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
391 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
*
9895638 CGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
456 CGGTTTTAAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATAC-A
** *
9895703 AAAAAAAATTCAGTATAAGCATGCTCTCAAACGGTGTATATCAGAGTTTGAAAGAACTTATAGGA
520 AAAAAAAATTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGA
* *
9895768 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATT
585 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATAATTTAAATCGTTTCACAAATC
* *
9895833 ATTTTCTTTAAACCTGGCACTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCG
650 ATTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCC
9895898 TGGAGC
715 TGGAGC
* * * * * ** * * * * * * *
9895904 TTTTGCT-CTGTAG-TGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCATCTAGTA-CTC
1 -CTAG-TACT-CAGCT-ACAT---TAGGA-GCA-ACTCCA-GCTAT-GCC-CC-T-GAATACCTC
** * * * * * * *
9895966 AGCTACATTAGGAGCA-ACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGG-ATCAGAGTCA
52 AGCCCCATT-GGACCAGAGT-CA--T-T---TC-G--TA-ATC-GACCCA-TGGCCTC-CAG--A
* * * *
9896029 TTTCGTAATCGACCCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCATGGATATGCA
100 --TC-TAA-C-A---TTAGCCT-CA-AT-GA-C-C------C--T----CTC-CA-GGATATGCA
* *
9896094 GCATGGCCTGAGACAGTGTGTCATCCCTAGCTGGATGGTCCTGGGACTCAGCACCAGTCTCAGTA
138 GCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTA
* *
9896159 ACAGGTGACATCGGCGTCTCGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGC
203 ACAGGTGACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTATCAAATGCGAAGGACTCAGC
*
9896224 TCAAATCCCTCTACGACCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTAATTATTG
268 TCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTAATTATTG
*
9896289 AATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAACTATTAGCAAATAT
333 AATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATAT
*
9896354 TTTATGCAAAATAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTT
398 TTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTTT
* *
9896419 CAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAAAAAAAAT
463 AAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAAAAAAAAA
*
9896484 TTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTACAGGATCAGTGCT
528 TTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGATCAGTGCT
* **
9896549 GGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATTATTTCACAAATCATTTTCTT
593 GGAGGCTTGGTGTACCACATACTTACTATAAAAATAATTTAAATCGTTTCACAAATCATTTTCTT
* **
9896614 TAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCGCCCTTTAGC
658 TAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCTGGAGC
* * ** * * * * * * * * *
9896677 TTTTGCTCAGTAGTGAAATCCAAATA--ATCTATAATACACTCTGTGGCCTCCATCTAGTA-CTC
1 -----CT-AGTACTCAGCTAC-ATTAGGAGC-A-ACTCCA-GCTAT-GCC-CC-T-GAATACCTC
** * * * * *
9896739 AGCTACATTAGGAGCA-ACTCCAGCTATGCCCTTGAATACCTCAGCCCCATTGGACCAGAGTCGT
52 AGCCCCATT-GGACCAGAGT-CA--T-T----TCG--TA-ATC-GACCCA-TGG-CC----TC--
* * * * * * **
9896803 TTCATAATCGACCCTTGGCCTCCA-GATCCAGCATTAGCCTCAGTGACCCTCTCCAGGATATGCA
96 --CA-GATCTAACATTAGCCTCAATGA-CCCTC-T------------------CCAGGATATGCA
*
9896867 GCATGGCCTGGGATAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTA
138 GCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGTCTCAGTA
* * *
9896932 ACAGGTGACATCGGCGTCTTGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGGACTCAGC
203 ACAGGTGACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTATCAAATGCGAAGGACTCAGC
* * * * *
9896997 TCGAATGCCTCTATGGCCTCTAGTACCCCGTCCACGAGCT-CTACTTGTGCTCATCGTAATTATC
268 TCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAG-TACCACTTGTGCTCATCGTAATTATT
* *
9897061 AAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACATTTTTGATAATTATTAGCAAATA
332 GAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAGCAAATA
*
9897126 TTTTATGCAAAACAATATCAGAGTTTTAGAGTAAGCTATCGCGAGTAGCAAGCTAACTACGGTTT
397 TTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTACGGTTT
*
9897191 TCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAAAAAAAA
462 TAAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAAAAAAAA
* * * *
9897256 TTTCAATATAAGCATGCTCTCAAATGGTACATATCAGAGTTTGAAAGAACTTATAGGATCAGTGC
527 ATTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGATCAGTGC
* *
9897321 TGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATTATTTTCT
592 TGGAGGCTTGGTGTACCACATACTTACTATAAAAATAATTTAAATCGTTTCACAAATCATTTTCT
*
9897386 TTAAACCTGACTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCCTGGAGC
657 TTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAG-CCCCCTGGAGC
* * ** * * * * * * * * *
9897451 TTTTGCTCAGTAGTGAAATCCAAATA--ATCCATAATACACTCTGTGGCCTCCATCTAGTA-CTC
1 -----CT-AGTACTCAGCTAC-ATTAGGA-GCA-ACTCCA-GCTAT-GCC-CC-T-GAATACCTC
** * * * * *
9897513 AGCTACATTAGGAGCA-ACTCCAGCTATGCCCCTGAAT--ACCTCA--GCC-CCATTG-TGCCAG
52 AGCCCCATT-GGACCAGAGT-CA--T-T--TCGT-AATCGACC-CATGGCCTCCA--GAT-CTA-
* * * * * ** * *
9897571 AGTCATT-TCGT-AATCGACCCATGGCCTCCA-G--ATCCAGCATTAGCCTCAGTGACCCTCTCT
104 A--CATTAGCCTCAAT-GACCC-T---CTCCAGGATATGCAGCA-TGGCCT--GGGACAGTGTGT
*** * * * ** * * ***
9897631 -A-GGATATGCAGCATGG-CCTGGGACAGTGTGTCATCCCTAG-CTGGACGGT-CCTAGGACTCA
159 CATCCCTA-GCTGGACGGTCCTGGGAC--TCAG-CA--CC-AGTCT---CAGTAAC-AGGTGACA
* ** * * * ** * * * * * *
9897691 GCACCAGTCTCAGTAACCG-GT-GACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTA-TC
213 TCGGC-GTCTC-GTTA--GTGTCCAGATTAGAG-ATCG-TA---T-CA-AAT-GCGA-AGGACTC
9897753 AGATGCGAAGGACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTG
265 A---------------GCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTG
* * *
9897818 TGCTAATCGTAATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACATTTTTG
315 TGCTCATCGTAATTATTGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTG
* *
9897883 ATAATTATTAGCAAATATTTTATGCAAAACAATATAAGATTTTTAGAGTCAGCTATCGCGAGTAG
380 ATAATTATTAGCAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAG
*
9897948 CAAGCTAACTACGGTTTTTAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCA
445 CAAGCTAACTACGGTTTTAAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCA
*
9898013 GACAAATACAAAAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGA
510 GACAAATACAAAAAAAAATTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGA
* *
9898078 ACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCAT
575 ACTTATAGGATCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATAATTTAAATCGT
9898143 TTCACAAATCATTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGA
640 TTCACAAATCATTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGA
** *
9898208 AACAGCCCAATTGAG-
705 AACAGCCCCCTGGAGC
** * * * * ** * * * * * * *
9898223 CTTTTGCTCAGTAGTGAAATCCAAATATTCTATAATACACTCTGTGGCCTCCATCTAGTA-CTCA
1 CTAGTACTCAG--CT-ACAT--TAGGA-GC-A-ACTCCA-GCTAT-GCC-CC-T-GAATACCTCA
** * * * * * * *
9898287 GCTACATTAGGAGCA-ACTCCAGCTATGCCCCTGAATACTCAGCCCCATTGG--ACCAGA-GT--
53 GCCCCATT-GGACCAGAGT-CA--T-T---TC-G--TAATC-GACCCA-TGGCCTCCAGATCTAA
* * * * * *
9898346 CGTTTG-GT-AATCGACCCTTGGCCTCCA-G--ATCCAGCATTAGCCTCAGCGACCCTCTCCAGG
105 CATTAGCCTCAAT-GACCC-T---CTCCAGGATATGCAGCA-TGGCCT--GGGA-------CA-G
* *
9898406 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
154 -TGTG--TCAT--CC------------------CTAGCTGGACGGTCCTGGGACTCAGCACCAGT
* * * *
9898471 CTCAGTAATAGGTGACATCGGCGTCTTGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGG
196 CTCAGTAACAGGTGACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTATCAAATGCGAAGG
* * * *
9898536 ACTCAGCTCGAATCCCTCTATGGCCTCTAGTACCCCGTCCACGAGCACTACTTGTGCTCATCGTA
261 ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
*
9898601 ATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
326 ATTATTGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
9898666 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
391 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
*
9898731 CGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
456 CGGTTTTAAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
*
9898796 AAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGAT
521 AAAAAAATTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGAT
*
9898861 CAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATCA
586 CAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATAATTTAAATCGTTTCACAAATCA
*
9898926 TTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTTATCGCGACACAACGAAACAGCCCCCT
651 TTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCT
*
9898991 TGAGC
716 GGAGC
9898996 TTTTGTTCAG
Statistics
Matches: 4014, Mismatches: 300, Indels: 385
0.85 0.06 0.08
Matches are distributed among these distances:
720 1198 0.30
721 195 0.05
722 5 0.00
723 6 0.00
726 2 0.00
727 2 0.00
728 4 0.00
729 3 0.00
730 3 0.00
731 2 0.00
732 13 0.00
733 10 0.00
735 1 0.00
736 1 0.00
739 1 0.00
740 8 0.00
741 15 0.00
742 10 0.00
743 13 0.00
744 9 0.00
745 5 0.00
746 4 0.00
747 3 0.00
748 1 0.00
749 12 0.00
750 7 0.00
751 8 0.00
752 6 0.00
753 3 0.00
755 8 0.00
756 7 0.00
757 5 0.00
758 6 0.00
759 13 0.00
760 2 0.00
761 1 0.00
762 1 0.00
764 2 0.00
765 1 0.00
766 4 0.00
767 4 0.00
768 5 0.00
769 2 0.00
770 3 0.00
771 2 0.00
772 494 0.12
773 900 0.22
774 903 0.22
775 3 0.00
776 2 0.00
777 5 0.00
778 8 0.00
779 7 0.00
780 3 0.00
781 4 0.00
782 1 0.00
784 1 0.00
786 2 0.00
787 6 0.00
788 1 0.00
789 2 0.00
790 1 0.00
793 3 0.00
794 5 0.00
795 7 0.00
796 4 0.00
797 10 0.00
799 2 0.00
800 4 0.00
802 2 0.00
803 2 0.00
804 6 0.00
805 10 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (720 bp):
CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCTAACATTAGCCTCAATGACCCTCTCCAGG
ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
CTCAGTAACAGGTGACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTATCAAATGCGAAGG
ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
ATTATTGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
CGGTTTTAAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
AAAAAAATTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGAT
CAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATAATTTAAATCGTTTCACAAATCA
TTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCT
GGAGC
Found at i:9898701 original size:772 final size:773
Alignment explanation
Indices: 9895183--9900500 Score: 9602
Period size: 773 Copynumber: 6.9 Consensus size: 773
9895173 CCCCTGGAGC
9895183 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
1 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
* * *
9895248 AAAGTCATTTCGTAATCGACCCATGGCCTCCAGATCTAACATTAGCCTCAGTGACCCTCTCCAGG
66 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCCAGG
* *
9895313 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACAGTCTTGGGACTCAGCACCAGT
131 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
* * *
9895378 CTCAGTAACATGTGACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTATCAAATGCGAAGG
196 CTCAGTAACAGGTGACATCGGCGTCTCGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGG
* * *
9895443 ACTCAGCTCAACTCCCTCTACGGCCTCTAGTACCCCGTCAACGAGTACCACTTGTGCTCATCTTA
261 ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
* *
9895508 ATTATTGAATTAATTTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
326 ATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
*
9895573 CAAATATTTTATGTAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
391 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
9895638 CGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
456 CGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATAC-A
* ** *
9895703 AAAAAAAATTCAGTATAAGCATGCTCTCAAACGGTGTATATCAGAGTTTGAAAGAACTTATAGGA
520 AAAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGA
9895768 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATT
585 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATT
* *
9895833 ATTTTCTTTAAACCTGGCACTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCG
650 ATTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCC
* *
9895898 TGGAGCTTTTGCTCTGTAGTGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCAT
715 TTGAGCTTTTGCTCAGTAGTGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCAT
*
9895957 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGATC
1 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
9896022 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCT-CATG
66 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCCA-G
* *
9896086 GATATGCAGCATGGCCTGAGACAGTGTGTCATCCCTAGCTGGATGGTCCTGGGACTCAGCACCAG
130 GATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAG
9896151 TCTCAGTAACAGGTGACATCGGCGTCTCGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAG
195 TCTCAGTAACAGGTGACATCGGCGTCTCGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAG
*
9896216 GACTCAGCTCAAATCCCTCTACGACCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGT
260 GACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGT
* *
9896281 AATTATTGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAACTATTA
325 AATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTA
*
9896346 GCAAATATTTTATGCAAAATAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACT
390 GCAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACT
9896411 ACGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACA
455 ACGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACA
*
9896476 AAAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTACAGGA
520 AAAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGA
** *
9896541 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATTATTTCACAAATC
585 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATT
*
9896606 ATTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCGCCC
650 ATTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCC
* *
9896671 TTTAGCTTTTGCTCAGTAGTGAAATCCAAATAATCTATAATACACTCTGTGGCCTCCAT
715 TTGAGCTTTTGCTCAGTAGTGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCAT
*
9896730 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCTTGAATACCTCAGCCCCATTGGACC
1 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
* * *
9896795 AGAGTCGTTTCATAATCGACCCTTGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCCAGG
66 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCCAGG
*
9896860 ATATGCAGCATGGCCTGGGATAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
131 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
*
9896925 CTCAGTAACAGGTGACATCGGCGTCTTGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGG
196 CTCAGTAACAGGTGACATCGGCGTCTCGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGG
* * * *
9896990 ACTCAGCTCGAATGCCTCTATGGCCTCTAGTACCCCGTCCACGAGCT-CTACTTGTGCTCATCGT
261 ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAG-TACCACTTGTGCTCATCGT
* *
9897054 AATTATCAAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACATTTTTGATAATTATTA
325 AATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTA
*
9897119 GCAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTAAGCTATCGCGAGTAGCAAGCTAACT
390 GCAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACT
9897184 ACGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACA
455 ACGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACA
* * *
9897249 AAAAAAATTTCAATATAAGCATGCTCTCAAATGGTACATATCAGAGTTTGAAAGAACTTATAGGA
520 AAAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGA
9897314 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATT
585 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATT
*
9897379 ATTTTCTTTAAACCTGACTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCC
650 ATTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAG-CCCC
*
9897444 CTGGAGCTTTTGCTCAGTAGTGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCAT
714 CTTGAGCTTTTGCTCAGTAGTGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCAT
9897504 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGTG-C
1 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTG-GAC
*
9897568 CAGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCTAG
65 CAGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCCAG
*
9897633 GATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTAGGACTCAGCACCAG
130 GATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAG
* *
9897698 TCTCAGTAACCGGTGACATCGGCGTCTCGTTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAG
195 TCTCAGTAACAGGTGACATCGGCGTCTCGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAG
*
9897763 GACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTAATCGT
260 GACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGT
*
9897828 AATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACATTTTTGATAATTATTA
325 AATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTA
* *
9897893 GCAAATATTTTATGCAAAACAATATAAGATTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACT
390 GCAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACT
*
9897958 ACGGTTTTTAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACA
455 ACGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACA
9898023 AAAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGA
520 AAAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGA
* *
9898088 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCATTTCACAAATC
585 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATT
**
9898153 ATTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCAA
650 ATTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCC
* *
9898218 TTGAGCTTTTGCTCAGTAGTGAAATCCAAATATTCTATAATACACTCTGTGGCCTCCAT
715 TTGAGCTTTTGCTCAGTAGTGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCAT
9898277 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATA-CTCAGCCCCATTGGACC
1 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
* * * *
9898341 AGAGTCGTTTGGTAATCGACCCTTGGCCTCCAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGG
66 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCCAGG
9898406 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
131 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
* *
9898471 CTCAGTAATAGGTGACATCGGCGTCTTGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGG
196 CTCAGTAACAGGTGACATCGGCGTCTCGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGG
* * * *
9898536 ACTCAGCTCGAATCCCTCTATGGCCTCTAGTACCCCGTCCACGAGCACTACTTGTGCTCATCGTA
261 ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
9898601 ATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
326 ATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
9898666 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
391 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
9898731 CGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
456 CGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
9898796 AAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGAT
521 AAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGAT
*
9898861 CAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATCA
586 CAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATTA
*
9898926 TTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTTATCGCGACACAACGAAACAGCCCCCT
651 TTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCT
*
9898991 TGAGCTTTTGTTCAGTAGTGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCAT
716 TGAGCTTTTGCTCAGTAGTGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCAT
*
9899049 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATATCTCAGCCCCATTGGACC
1 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
* * * *
9899114 AGAGTCGTTTGGTAATCGACCCTTGGCCTCCAGATCCAGCATTAGCCTCAGCGACCCTCTCCAGG
66 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCCAGG
9899179 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
131 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
* *
9899244 CTCAGTAATAGGTGACATCGGCGTCTTGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGG
196 CTCAGTAACAGGTGACATCGGCGTCTCGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGG
* * * *
9899309 ACTCAGCTCGAATCCCTCTATGGCCTCTAGTACCCCGTCCACGAGCACTACTTGTGCTCATCGTA
261 ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
*
9899374 ATTATCAAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
326 ATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
9899439 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
391 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
9899504 CGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
456 CGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
9899569 AAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGAT
521 AAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGAT
9899634 CAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATTA
586 CAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATTA
9899699 TTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCT
651 TTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCT
9899764 TGAGCTTTTGCTCAGTAGTGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCAT
716 TGAGCTTTTGCTCAGTAGTGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCAT
9899822 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
1 CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
* *
9899887 AGAGTCATTTCGTAATCGAACCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCTAGG
66 AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCCAGG
* *
9899952 ATATGCAGCGTGGCCTGGGACAGTGTGTCATCCCTAGCTGGATGGTCCTGGGACTCAGCACCAGT
131 ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
9900017 CTCAGTAACAGGTGACATCGGCGTCTCGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGG
196 CTCAGTAACAGGTGACATCGGCGTCTCGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGG
9900082 ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
261 ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
*
9900147 ATTATTGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
326 ATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
*
9900212 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTTAGCTATCGCGAGTAGCAAGCTAACTA
391 CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
* * * *
9900277 CGATTTTTAGTTTACACTACTTAAAATGTTTCATAACACATACACAATTTTTCAGACAAATACAA
456 CGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATAC-A
*
9900342 AAAAAAAATT-AGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGA
520 AAAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGA
9900406 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATT
585 TCAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATT
9900471 ATTTTCTTTAAACCTGGCTCTGATACCACT
650 ATTTTCTTTAAACCTGGCTCTGATACCACT
9900501 AAATGTAACA
Statistics
Matches: 4385, Mismatches: 150, Indels: 19
0.96 0.03 0.00
Matches are distributed among these distances:
771 1 0.00
772 744 0.17
773 2391 0.55
774 1248 0.28
775 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (773 bp):
CTAGTACTCAGCTACATTAGGAGCAACTCCAGCTATGCCCCTGAATACCTCAGCCCCATTGGACC
AGAGTCATTTCGTAATCGACCCATGGCCTCCAGATCCAGCATTAGCCTCAGTGACCCTCTCCAGG
ATATGCAGCATGGCCTGGGACAGTGTGTCATCCCTAGCTGGACGGTCCTGGGACTCAGCACCAGT
CTCAGTAACAGGTGACATCGGCGTCTCGCTAGTGTCCAGATTAGAGATCGTATCAGATGCGAAGG
ACTCAGCTCAAATCCCTCTACGGCCTCTAGTACCCCGTCCACGAGTACCACTTGTGCTCATCGTA
ATTATCGAATTAATCTATATTTAGAAGTTTTATGCACATTAGTTTACAGTTTTGATAATTATTAG
CAAATATTTTATGCAAAACAATATCAGAGTTTTAGAGTCAGCTATCGCGAGTAGCAAGCTAACTA
CGGTTTTCAGTTTACACTACTTAAAGTGTTTCATAACACATACACAATATTTCAGACAAATACAA
AAAAAATTTCAGTATAAGCATGCTCTCAAACGGTACATATCAGAGTTTCAAAGAACTTATAGGAT
CAGTGCTGGAGGCTTGGTGTACCACATACTTACTATAAAAATATTTTAAATCGTTTCACAAATTA
TTTTCTTTAAACCTGGCTCTGATACCACTGATACGCTTCATCGCGACACAACGAAACAGCCCCCT
TGAGCTTTTGCTCAGTAGTGAAATCCAAATAATCCATAATACACTCTGTGGCCTCCAT
Found at i:9900583 original size:13 final size:13
Alignment explanation
Indices: 9900565--9900590 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9900555 CATGAGAGTA
9900565 CTTTTAGGAAACC
1 CTTTTAGGAAACC
9900578 CTTTTAGGAAACC
1 CTTTTAGGAAACC
9900591 TTATCAAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
CTTTTAGGAAACC
Found at i:9905965 original size:10 final size:9
Alignment explanation
Indices: 9905950--9905988 Score: 53
Period size: 10 Copynumber: 4.2 Consensus size: 9
9905940 TTATGTTTTA
9905950 ATTATAATAT
1 ATTAT-ATAT
9905960 ATTATATTAT
1 ATTATA-TAT
9905970 ATTATAT-T
1 ATTATATAT
9905978 ATTATATAT
1 ATTATATAT
9905987 AT
1 AT
9905989 AAACTAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 8 0.30
9 5 0.19
10 14 0.52
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
ATTATATAT
Found at i:9905966 original size:31 final size:26
Alignment explanation
Indices: 9905910--9905986 Score: 111
Period size: 26 Copynumber: 3.0 Consensus size: 26
9905900 ATAATAAAGA
9905910 TATTTTATGTTTTAATTATAATATAT
1 TATTTTATGTTTTAATTATAATATAT
9905936 TATTTTATGTTTTAATTATAATATAT
1 TATTTTATGTTTTAATTATAATATAT
* * * *
9905962 TATATTATATTAT-ATTATTATATAT
1 TATTTTATGTTTTAATTATAATATAT
9905987 ATAAACTAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
25 11 0.23
26 36 0.77
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (26 bp):
TATTTTATGTTTTAATTATAATATAT
Found at i:9905986 original size:15 final size:15
Alignment explanation
Indices: 9905924--9905979 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
9905914 TTATGTTTTA
*
9905924 ATTATAATATATTAT
1 ATTATATTATATTAT
* * *
9905939 TTTATGTTTTAATTAT
1 ATTATATTAT-ATTAT
*
9905955 AATATATTATATTAT
1 ATTATATTATATTAT
9905970 ATTATATTAT
1 ATTATATTAT
9905980 TATATATATA
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
15 20 0.65
16 11 0.35
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (15 bp):
ATTATATTATATTAT
Found at i:9906765 original size:22 final size:22
Alignment explanation
Indices: 9906723--9906769 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
9906713 ATATTTGAGC
*
9906723 ATTGGTATTGAATTTATATTTA
1 ATTGGTATTGAATTGATATTTA
*
9906745 ATTGGTATTTAATCTGA-ATTTA
1 ATTGGTATTGAAT-TGATATTTA
9906767 ATT
1 ATT
9906770 ATTAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.53
Consensus pattern (22 bp):
ATTGGTATTGAATTGATATTTA
Found at i:9913275 original size:22 final size:23
Alignment explanation
Indices: 9913250--9913296 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
9913240 ATTTTTAGAC
*
9913250 ATGAGTTA-TGTTAAATTAATTG
1 ATGAGTTAGGGTTAAATTAATTG
9913272 ATGAGTTAGGGGTTAAATTAATTG
1 ATGAGTTA-GGGTTAAATTAATTG
9913296 A
1 A
9913297 ATTTCAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 8 0.36
24 14 0.64
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.40
Consensus pattern (23 bp):
ATGAGTTAGGGTTAAATTAATTG
Found at i:9917267 original size:17 final size:18
Alignment explanation
Indices: 9917247--9917286 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
9917237 CATAAATGAT
*
9917247 ATATATACAA-CATAAAA
1 ATATATACAAGAATAAAA
*
9917264 ATATATAGAAGAATAAAA
1 ATATATACAAGAATAAAA
9917282 ATATA
1 ATATA
9917287 AAATAAAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (18 bp):
ATATATACAAGAATAAAA
Found at i:9917372 original size:14 final size:13
Alignment explanation
Indices: 9917334--9917382 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
9917324 AAAAAATATG
9917334 ATATTTAATAATA
1 ATATTTAATAATA
9917347 AT-TTTAA-AATA
1 ATATTTAATAATA
9917358 ATATTTAATATATA
1 ATATTTAATA-ATA
*
9917372 ATATATAATAA
1 ATATTTAATAA
9917383 CAATTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 4 0.12
14 12 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:9917707 original size:19 final size:19
Alignment explanation
Indices: 9917679--9917837 Score: 75
Period size: 18 Copynumber: 8.2 Consensus size: 19
9917669 AACTTTTGAT
*
9917679 AATA-ATAATATAGATAAA
1 AATATATAATATATATAAA
*
9917697 AATATATAATAGTATAAAAA
1 AATATATAATA-TATATAAA
*
9917717 AATGACATAATA-ATAT-AA
1 AAT-ATATAATATATATAAA
* *
9917735 AATAAAT-ATA-ATAT-AT
1 AATATATAATATATATAAA
**
9917751 AATATGA-AAGTATATATGTA
1 AATAT-ATAA-TATATATAAA
9917771 AA-A-ATAATATATATAAA
1 AATATATAATATATATAAA
*
9917788 TAATATGAATAATAAATAATAAAA
1 -AATAT--ATAATATAT-AT-AAA
9917812 TAATTATATAATATAATATAAA
1 -AA-TATATAATAT-ATATAAA
9917834 AATA
1 AATA
9917838 AGATTAAAAA
Statistics
Matches: 110, Mismatches: 13, Indels: 34
0.70 0.08 0.22
Matches are distributed among these distances:
16 12 0.11
17 14 0.13
18 15 0.14
19 15 0.14
20 13 0.12
21 9 0.08
22 11 0.10
23 10 0.09
24 8 0.07
25 3 0.03
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (19 bp):
AATATATAATATATATAAA
Found at i:9917713 original size:18 final size:18
Alignment explanation
Indices: 9917688--9917752 Score: 53
Period size: 19 Copynumber: 3.5 Consensus size: 18
9917678 TAATAATAAT
9917688 ATAG-ATAAAAATATATA
1 ATAGTATAAAAATATATA
*
9917705 ATAGTATAAAAAAATGACATA
1 ATAGTAT--AAAAAT-ATATA
* *
9917726 ATAATATAAAATAAATATA
1 ATAGTATAAAA-ATATATA
9917745 ATA-TATAA
1 ATAGTATAA
9917753 TATGAAAGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
17 4 0.10
18 7 0.18
19 11 0.28
20 7 0.18
21 10 0.26
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
ATAGTATAAAAATATATA
Found at i:9917739 original size:13 final size:13
Alignment explanation
Indices: 9917723--9917838 Score: 54
Period size: 13 Copynumber: 9.3 Consensus size: 13
9917713 AAAAAATGAC
9917723 ATAATAATATAAA
1 ATAATAATATAAA
*
9917736 AT-A-AATATAAT
1 ATAATAATATAAA
9917747 AT-ATAATATGAAA
1 ATAATAATAT-AAA
* *
9917760 GT-AT-ATATGTAA
1 ATAATAATAT-AAA
*
9917772 A-AATAATAT-AT
1 ATAATAATATAAA
*
9917783 ATAAATAATAT-GA
1 AT-AATAATATAAA
9917796 ATAATAAATAATAAA
1 ATAAT-AAT-ATAAA
* *
9917811 ATAATTATATAAT
1 ATAATAATATAAA
9917824 ATAAT-ATA-AAA
1 ATAATAATATAAA
9917835 ATAA
1 ATAA
9917839 GATTAAAAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 20
0.72 0.11 0.18
Matches are distributed among these distances:
11 18 0.22
12 21 0.26
13 33 0.40
14 4 0.05
15 6 0.07
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (13 bp):
ATAATAATATAAA
Found at i:9917780 original size:15 final size:16
Alignment explanation
Indices: 9917762--9917838 Score: 51
Period size: 16 Copynumber: 5.1 Consensus size: 16
9917752 ATATGAAAGT
*
9917762 ATATATGTAAA-AATA
1 ATATATATAAATAATA
9917777 ATATATATAAATAAT-
1 ATATATATAAATAATA
9917792 ATGA-ATAATAAATAATA
1 AT-ATAT-ATAAATAATA
* *
9917809 AAATA-AT-TAT-ATA
1 ATATATATAAATAATA
9917822 ATATAATATAAA-AATA
1 ATAT-ATATAAATAATA
9917838 A
1 A
9917839 GATTAAAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 17
0.69 0.07 0.24
Matches are distributed among these distances:
13 6 0.12
14 3 0.06
15 18 0.38
16 19 0.40
17 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.34
Consensus pattern (16 bp):
ATATATATAAATAATA
Found at i:9917809 original size:32 final size:29
Alignment explanation
Indices: 9917725--9917838 Score: 79
Period size: 32 Copynumber: 3.7 Consensus size: 29
9917715 AAAATGACAT
* * *
9917725 AATAATATAAAATAAATATAATATATAATATG
1 AATAATATAATATAAAAATAA-A-ATAAT-TA
* * *
9917757 AA-AGTATATATGTAAAAATAATAT-ATATA
1 AATAATATA-ATATAAAAATAAAATAAT-TA
9917786 AATAATATGAATAATAAATAATAAAATAATTA
1 AATAATAT-AAT-ATAAA-AATAAAATAATTA
*
9917818 TATAATATAATATAAAAATAA
1 AATAATATAATATAAAAATAA
9917839 GATTAAAAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
29 11 0.17
30 13 0.20
31 13 0.20
32 27 0.41
33 2 0.03
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (29 bp):
AATAATATAATATAAAAATAAAATAATTA
Found at i:9917849 original size:75 final size:76
Alignment explanation
Indices: 9917680--9917847 Score: 183
Period size: 75 Copynumber: 2.3 Consensus size: 76
9917670 ACTTTTGATA
*
9917680 ATAATAATATAGA--TAAAAATATATAATAGTATAAAAAAATGACATAATAATATAAAATAAATA
1 ATAAAAATATAGATGTAAAAATATATAATAGTATAAAAAAATGACATAATAATATAAAATAAATA
9917743 TAATATATAAT
66 TAATATATAAT
* * * *
9917754 ATGAAAGTATATATGTAAAAATA-AT-ATA-TATAAATAATATGA-ATAATAAATAATAAAATAA
1 ATAAAAATATAGATGTAAAAATATATAATAGTATAAA-AAAATGACATAAT-AAT-ATAAAATAA
*
9917815 TTAT-ATAATATAAT
63 ATATAAT-ATATAAT
9917829 ATAAAAATA-AGAT-TAAAAA
1 ATAAAAATATAGATGTAAAAA
9917848 AACAGACAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
73 17 0.22
74 26 0.33
75 28 0.35
76 8 0.10
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.32
Consensus pattern (76 bp):
ATAAAAATATAGATGTAAAAATATATAATAGTATAAAAAAATGACATAATAATATAAAATAAATA
TAATATATAAT
Found at i:9919858 original size:206 final size:206
Alignment explanation
Indices: 9919498--9920874 Score: 2101
Period size: 205 Copynumber: 6.7 Consensus size: 206
9919488 AAATCTGCTT
* *
9919498 CTTTGGTTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
9919563 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGTCAAATCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGTCAAATCATCTT
*
9919628 GGATCTTGCTTCAGT-TAAATTATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGT
131 GGATCTTGCTTCAGTATAAA-CATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGT
9919692 GGAGATGCCAGA
195 GGAGATGCCAGA
* *
9919704 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCGTCGTAAGCAC
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
9919769 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCATAAGAATGTCAAATCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGTCAAATCATCTT
**
9919834 GGATCTTGCTTCAGTGA-AATTATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGT
131 GGATCTTGCTTCAGT-ATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGT
9919898 GGAGATGCCAGA
195 GGAGATGCCAGA
*
9919910 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
9919975 ATGAAAGCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGTCAAATCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGTCAAATCATCTT
**
9920040 GGATCTTGCTTCAGTGA-AATTATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGT
131 GGATCTTGCTTCAGT-ATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGT
* *
9920104 GGAGGTGCTAGA
195 GGAGATGCCAGA
9920116 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACA-
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
9920180 AGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATG-CTAAATCATC
66 A-TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGTC-AAATCATC
* * *
9920244 TTGGAAC-TGCTTTAGTATAAACATCTAAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAG
129 TTGGATCTTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAG
9920308 TGGAGATGCCAGA
194 TGGAGATGCCAGA
* * ** * *
9920321 CTTCGATTTGCTCTCCAACAATACAGAGATGCCAAATCATATTAGATTTGCTTCATCATAAACAC
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * *
9920386 GTGAAAGCCAAATCAGCTATGTCTTCTATTTGCTCATTGTAAGCACAA-AGATGTTAAATCATCT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGA-ATGTCAAATCATCT
9920450 TGGATC-TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGT
130 TGGATCTTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGT
*
9920514 GGAAATGCCAGA
195 GGAGATGCCAGA
* * * * *
9920526 CTTCGATTTGCTCTCTGACAATACAGAGATGTCAAATCATCTTAGATTTACTTCAACGTAAACAC
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * *
9920591 GTGAAAGCCAAATCAACTATGTCTTCGATTCGCTT-CTTGTAAGCACAAGGATG-CTAAATCATC
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTG-TTCCTTGTAAGCACAAGAATGTC-AAATCATC
* * * * **
9920654 TTTGATC-TGCTTCAGTATAAACATCTAAAGGTGAGATATGCTATGTATCTACTCCCTATTGAAG
129 TTGGATCTTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAG
9920718 TGGAGATGCCAGA
194 TGGAGATGCCAGA
* * * *
9920731 CTTCGATTTGCTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * * *
9920796 GTGAAAGCCAAATCATCTATGTCTTTGGTTTGTTCCTTGTAAGCACAAGAATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGTCAAATCATCTT
9920861 GGATCTTGCTTCAG
131 GGATCTTGCTTCAG
9920875 CCAAATCTGC
Statistics
Matches: 1091, Mismatches: 66, Indels: 28
0.92 0.06 0.02
Matches are distributed among these distances:
204 3 0.00
205 551 0.51
206 535 0.49
207 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (206 bp):
CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGTCAAATCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTG
GAGATGCCAGA
Found at i:9924391 original size:47 final size:47
Alignment explanation
Indices: 9924317--9924470 Score: 256
Period size: 47 Copynumber: 3.3 Consensus size: 47
9924307 TCCTTCGGGA
*
9924317 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
9924364 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
*
9924411 CTTATCACATATATACACTTTCACATTCATCACATCGGCCTTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9924458 CTTATCACATATA
1 CTTATCACATATA
9924471 CATATCTTGT
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
46 1 0.01
47 97 0.98
48 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.06, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:9924442 original size:25 final size:25
Alignment explanation
Indices: 9924367--9924445 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 25
9924357 ATTAGGCCTT
9924367 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
* * *
9924392 ATCACAT-T-TGC-CATTCAGCCTT-
1 ATCACATATATACACTTTCA-CATTC
9924414 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
9924439 ATCACAT
1 ATCACAT
9924446 CGGCCTTTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
22 12 0.28
23 6 0.14
24 6 0.14
25 19 0.44
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.35
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:9926339 original size:13 final size:13
Alignment explanation
Indices: 9926321--9926345 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9926311 TACTAAATTT
9926321 TCATGGATTCAAA
1 TCATGGATTCAAA
9926334 TCATGGATTCAA
1 TCATGGATTCAA
9926346 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:9936727 original size:11 final size:13
Alignment explanation
Indices: 9936704--9936752 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
9936694 AAAAAATATG
9936704 ATATTTAATAATA
1 ATATTTAATAATA
9936717 AT-TTTAA-AATA
1 ATATTTAATAATA
9936728 ATATTTAATAAATA
1 ATATTTAAT-AATA
*
9936742 ATATATAATAA
1 ATATTTAATAA
9936753 CAATTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 4 0.12
14 12 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:9937078 original size:23 final size:22
Alignment explanation
Indices: 9937050--9937192 Score: 61
Period size: 19 Copynumber: 6.6 Consensus size: 22
9937040 ACTTTTGATA
9937050 ATAATAATATAGATAAAAAATAT
1 ATAATAATATA-ATAAAAAATAT
* *
9937073 ATAAT-A-GT-ATAAAAAATGAC
1 ATAATAATATAATAAAAAAT-AT
*
9937093 ATAATAATAT-A-AAATAA-AT
1 ATAATAATATAATAAAAAATAT
* *
9937112 ATAAT-ATATAATATGAAAGTAT
1 ATAATAATATAATA-AAAAATAT
* * * *
9937134 ATATGTAAAAATAATATATAATAT
1 ATA-AT-AATATAATAAAAAATAT
*
9937158 AT-ATAA-ATAATAAGAATAATAA
1 ATAATAATATAATAA-AA-AATAT
*
9937180 ATAATAAAATAAT
1 ATAATAATATAAT
9937193 TATATAATAT
Statistics
Matches: 89, Mismatches: 17, Indels: 27
0.67 0.13 0.20
Matches are distributed among these distances:
18 4 0.04
19 16 0.18
20 13 0.15
21 12 0.13
22 15 0.17
23 10 0.11
24 12 0.13
25 7 0.08
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (22 bp):
ATAATAATATAATAAAAAATAT
Found at i:9937122 original size:13 final size:13
Alignment explanation
Indices: 9937093--9937214 Score: 56
Period size: 13 Copynumber: 10.1 Consensus size: 13
9937083 AAAAAATGAC
9937093 ATAATAATATAAA-
1 ATAAT-ATATAAAT
9937106 ATAA-ATATAATAT
1 ATAATATATAA-AT
*
9937119 ATAATATGA-AAGT
1 ATAATAT-ATAAAT
* *
9937132 AT-ATATGTAAAA
1 ATAATATATAAAT
9937144 ATAATATAT--A-
1 ATAATATATAAAT
9937154 AT-ATATATAAAT
1 ATAATATATAAAT
*
9937166 AATAAGA-AT-AAT
1 -ATAATATATAAAT
9937178 A-AATA-ATAAA-
1 ATAATATATAAAT
9937188 ATAAT-TATATAAT
1 ATAATATATA-AAT
*
9937201 ATAATATAAAAAT
1 ATAATATATAAAT
9937214 A
1 A
9937215 AGATTAAAAA
Statistics
Matches: 84, Mismatches: 8, Indels: 34
0.67 0.06 0.27
Matches are distributed among these distances:
9 6 0.07
10 8 0.10
11 17 0.20
12 14 0.17
13 29 0.35
14 9 0.11
15 1 0.01
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (13 bp):
ATAATATATAAAT
Found at i:9937160 original size:24 final size:23
Alignment explanation
Indices: 9937047--9937125 Score: 55
Period size: 23 Copynumber: 3.6 Consensus size: 23
9937037 AAAACTTTTG
*
9937047 ATAATA-ATAATATA-GAT-AAA
1 ATAATATATAATATATAATAAAA
9937067 A-AATATATAATAGTAT-A-AAAA
1 ATAATATATAATA-TATAATAAAA
* *
9937088 ATGACATA-ATAATATAAAATAAAT
1 AT-A-ATATATAATATATAATAAAA
9937112 ATAATATATAATAT
1 ATAATATATAATAT
9937126 GAAAGTATAT
Statistics
Matches: 47, Mismatches: 2, Indels: 17
0.71 0.03 0.26
Matches are distributed among these distances:
19 4 0.09
20 7 0.15
21 7 0.15
22 5 0.11
23 16 0.34
24 8 0.17
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (23 bp):
ATAATATATAATATATAATAAAA
Found at i:9937215 original size:39 final size:41
Alignment explanation
Indices: 9937049--9937215 Score: 106
Period size: 39 Copynumber: 4.1 Consensus size: 41
9937039 AACTTTTGAT
9937049 AATAATAATATAGATAAAA-AA-TATATA-ATAGT-ATA-AAA
1 AATAATAA-ATAGATAAAATAATTATATATATA-TAATATAAA
* * *
9937087 AATGACAT-AATAATATAAAATAAATATA-ATATATAATATGAA
1 AAT-A-ATAAAT-AGATAAAATAATTATATATATATAATATAAA
* * *
9937129 AGT-ATATAT-G-TAAAAATAATATATAATATATATAAATAATAAG
1 AATAATAAATAGAT-AAAATAAT-TAT-ATATATAT-AAT-ATAAA
9937172 AATAATAAATA-ATAAAATAATTATATA-ATATAATATAAA
1 AATAATAAATAGATAAAATAATTATATATATATAATATAAA
9937211 AATAA
1 AATAA
9937216 GATTAAAAAC
Statistics
Matches: 100, Mismatches: 11, Indels: 35
0.68 0.08 0.24
Matches are distributed among these distances:
37 1 0.01
38 12 0.12
39 23 0.23
40 12 0.12
41 20 0.20
42 10 0.10
43 8 0.08
44 13 0.13
45 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (41 bp):
AATAATAAATAGATAAAATAATTATATATATATAATATAAA
Found at i:9940699 original size:13 final size:13
Alignment explanation
Indices: 9940683--9940707 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9940673 ATAAACACTA
9940683 AAAATATTTTTTT
1 AAAATATTTTTTT
9940696 AAAATATTTTTT
1 AAAATATTTTTT
9940708 GACTCGAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
AAAATATTTTTTT
Found at i:9943359 original size:26 final size:27
Alignment explanation
Indices: 9943327--9943396 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 27
9943317 GCGGATACTC
9943327 CACAGCTCGTGTGAGCAAG-CCCATTT
1 CACAGCTCGTGTGAGCAAGACCCATTT
* *
9943353 CATAGCTCGTGTGAGC-AGACTCATTT
1 CACAGCTCGTGTGAGCAAGACCCATTT
*
9943379 CACAACTCGTGTGAGCAA
1 CACAGCTCGTGTGAGCAA
9943397 TTATGTAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.05
26 35 0.92
27 1 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (27 bp):
CACAGCTCGTGTGAGCAAGACCCATTT
Found at i:9943929 original size:13 final size:13
Alignment explanation
Indices: 9943911--9943935 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9943901 TGAAAGGGAA
9943911 AGTAAGTAAATAG
1 AGTAAGTAAATAG
9943924 AGTAAGTAAATA
1 AGTAAGTAAATA
9943936 TGTGATGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.20, T:0.24
Consensus pattern (13 bp):
AGTAAGTAAATAG
Found at i:9955836 original size:27 final size:26
Alignment explanation
Indices: 9955792--9955843 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
9955782 CTCGCTGCAA
*
9955792 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
9955819 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
9955844 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:9957391 original size:51 final size:51
Alignment explanation
Indices: 9957314--9957415 Score: 168
Period size: 51 Copynumber: 2.0 Consensus size: 51
9957304 CAAATTGAGT
* * *
9957314 AATGCCTTGTGTGGGCTGAAAAAAGGCCATCGAGCTTGGTATGAGAGGCTA
1 AATGCATTGTATGGCCTGAAAAAAGGCCATCGAGCTTGGTATGAGAGGCTA
*
9957365 AATGCATTGTATGGCCTGAAACAAGGCCATCGAGCTTGGTATGAGAGGCTA
1 AATGCATTGTATGGCCTGAAAAAAGGCCATCGAGCTTGGTATGAGAGGCTA
9957416 TCTCAATTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (51 bp):
AATGCATTGTATGGCCTGAAAAAAGGCCATCGAGCTTGGTATGAGAGGCTA
Found at i:9959001 original size:22 final size:22
Alignment explanation
Indices: 9958974--9959037 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
9958964 ATTATTTATT
9958974 TAATTATAATTAAATAATTAAA
1 TAATTATAATTAAATAATTAAA
* *
9958996 TAATTAAATATTTGAA-AATTAAA
1 TAATT--ATAATTAAATAATTAAA
9959019 -AATTA-AATTAAATTAATTA
1 TAATTATAATTAAA-TAATTA
9959038 GTCATTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
19 5 0.15
20 1 0.03
21 5 0.15
22 9 0.26
23 7 0.21
24 7 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
TAATTATAATTAAATAATTAAA
Found at i:9959022 original size:7 final size:8
Alignment explanation
Indices: 9958979--9959026 Score: 64
Period size: 8 Copynumber: 6.2 Consensus size: 8
9958969 TTATTTAATT
9958979 ATAATTAA
1 ATAATTAA
9958987 ATAATTAA
1 ATAATTAA
9958995 ATAATTAA
1 ATAATTAA
* *
9959003 ATATTTGA
1 ATAATTAA
9959011 A-AATTAA
1 ATAATTAA
9959018 A-AATTAA
1 ATAATTAA
9959025 AT
1 AT
9959027 TAAATTAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
7 12 0.34
8 23 0.66
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (8 bp):
ATAATTAA
Found at i:9969961 original size:23 final size:23
Alignment explanation
Indices: 9969931--9969974 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
9969921 ATTTGCAATT
9969931 AGAAATTGAGCAGTGCCGGAATC
1 AGAAATTGAGCAGTGCCGGAATC
*
9969954 AGAAATTGAGCAGTGTCGGAA
1 AGAAATTGAGCAGTGCCGGAA
9969975 ATAGTGCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.32, T:0.18
Consensus pattern (23 bp):
AGAAATTGAGCAGTGCCGGAATC
Found at i:9975299 original size:30 final size:30
Alignment explanation
Indices: 9975263--9975321 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
9975253 ACACGGTCTA
9975263 TCACATGGGCGTGTGGCAAGCCCGTGTGGC
1 TCACATGGGCGTGTGGCAAGCCCGTGTGGC
* *
9975293 TCACATGGGCGTGTGGCCAGCTCGTGTGG
1 TCACATGGGCGTGTGGCAAGCCCGTGTGG
9975322 AAATGCCCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.12, C:0.25, G:0.41, T:0.22
Consensus pattern (30 bp):
TCACATGGGCGTGTGGCAAGCCCGTGTGGC
Found at i:9976191 original size:12 final size:13
Alignment explanation
Indices: 9976163--9976194 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9976153 AACATAAGTG
9976163 TTTTTTTTTCACC
1 TTTTTTTTTCACC
9976176 TTTTTTTTTCA--
1 TTTTTTTTTCACC
9976187 TTTTTTTT
1 TTTTTTTT
9976195 AGAACAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
13 11 0.58
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTTTTCACC
Found at i:9977199 original size:9 final size:9
Alignment explanation
Indices: 9977185--9977221 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
9977175 AAAAAGAAAG
9977185 ATAAAAATA
1 ATAAAAATA
9977194 ATAAAAATA
1 ATAAAAATA
9977203 ATAAAAATA
1 ATAAAAATA
*
9977212 ATAATAATA
1 ATAAAAATA
9977221 A
1 A
9977222 ACTCAATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAAAAATA
Found at i:9977300 original size:24 final size:25
Alignment explanation
Indices: 9977269--9977328 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
9977259 TGATAATAGT
* **
9977269 AAAAAAAATACGAA-AGAAAAATGA
1 AAAAAAAATACAAATAGAAAAACAA
9977293 AAAAAAAATACAAATAGAAAAACAA
1 AAAAAAAATACAAATAGAAAAACAA
9977318 AAATAAAAATA
1 AAA-AAAAATA
9977329 ATAAACGTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 13 0.42
25 11 0.35
26 7 0.23
ACGTcount: A:0.78, C:0.05, G:0.07, T:0.10
Consensus pattern (25 bp):
AAAAAAAATACAAATAGAAAAACAA
Found at i:9977361 original size:17 final size:18
Alignment explanation
Indices: 9977336--9977375 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
9977326 ATAATAAACG
*
9977336 TATATAAAAAATT-AAAA
1 TATAAAAAAAATTAAAAA
9977353 TATAAAAAAAATTAAAAA
1 TATAAAAAAAATTAAAAA
9977371 TATAA
1 TATAA
9977376 GTATGAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
TATAAAAAAAATTAAAAA
Found at i:9977441 original size:21 final size:19
Alignment explanation
Indices: 9977408--9977459 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 19
9977398 AATTAATTTG
*
9977408 TAAAATAAAAATAAATAATA
1 TAAAAT-AAAATAAATAAAA
9977428 TAACAATTAAAATAAATAAAA
1 TAA-AA-TAAAATAAATAAAA
9977449 TAAAATAAAAT
1 TAAAATAAAAT
9977460 TGGGGTGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 6 0.21
20 5 0.17
21 17 0.59
22 1 0.03
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (19 bp):
TAAAATAAAATAAATAAAA
Found at i:9977458 original size:5 final size:5
Alignment explanation
Indices: 9977408--9977459 Score: 54
Period size: 5 Copynumber: 10.2 Consensus size: 5
9977398 AATTAATTTG
*
9977408 TAAAA TAAAA -ATAAA TAATA TAACAA TTAAAA T-AAA TAAAA TAAAA
1 TAAAA TAAAA TA-AAA TAAAA TAA-AA -TAAAA TAAAA TAAAA TAAAA
9977454 TAAAA T
1 TAAAA T
9977460 TGGGGTGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
4 5 0.12
5 28 0.70
6 4 0.10
7 3 0.08
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (5 bp):
TAAAA
Found at i:9992499 original size:37 final size:37
Alignment explanation
Indices: 9992433--9992535 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
9992423 CGAATAGTCC
* *
9992433 CCACACATAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
9992470 CCATACGTAGTCATCGGGTCTTACTCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
9992507 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
9992536 ATATATTTCC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:9992734 original size:48 final size:48
Alignment explanation
Indices: 9992676--9992906 Score: 435
Period size: 48 Copynumber: 4.8 Consensus size: 48
9992666 ATATACACAC
*
9992676 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
9992724 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
9992772 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
9992820 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
9992868 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA
9992907 TACATATATA
Statistics
Matches: 180, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 180 1.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:10005082 original size:13 final size:13
Alignment explanation
Indices: 10005064--10005092 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
10005054 GGTTGTTTAT
10005064 TAAACTAATTAAC
1 TAAACTAATTAAC
10005077 TAAACTAATTAAC
1 TAAACTAATTAAC
10005090 TAA
1 TAA
10005093 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:10014987 original size:15 final size:15
Alignment explanation
Indices: 10014960--10015041 Score: 62
Period size: 15 Copynumber: 5.2 Consensus size: 15
10014950 TCCTCCTATC
10014960 TTTT-TATTCTTATTT
1 TTTTCTATT-TTATTT
10014975 TTTTCTATTTTA-TT
1 TTTTCTATTTTATTT
*
10014989 TATTCTTATTTTATTT
1 TTTTC-TATTTTATTT
10015005 TTTT-TAATTTCTATTT
1 TTTTCT-ATTT-TATTT
*
10015021 TCATTTCAATTTTATTAT
1 T--TTTCTATTTTATT-T
10015039 TTT
1 TTT
10015042 ATTTTGAAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
14 7 0.13
15 18 0.33
16 17 0.31
17 4 0.07
18 9 0.16
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTCTATTTTATTT
Found at i:10015002 original size:5 final size:5
Alignment explanation
Indices: 10014961--10015046 Score: 65
Period size: 6 Copynumber: 16.8 Consensus size: 5
10014951 CCTCCTATCT
10014961 TTTTA TTCTTA TTTT- TTTCTA TTTTA -TTTA TTCTTA TTTTA TTTT-
1 TTTTA TT-TTA TTTTA TTT-TA TTTTA TTTTA TT-TTA TTTTA TTTTA
*
10015006 TTTTAA TTTCTA TTTTCA TTTCAA TTTTA --TTA TTTTA TTTT
1 TTTT-A TTT-TA TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTT
10015047 GAAAGACATA
Statistics
Matches: 67, Mismatches: 2, Indels: 24
0.72 0.02 0.26
Matches are distributed among these distances:
3 3 0.04
4 11 0.16
5 24 0.36
6 28 0.42
7 1 0.01
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:10015003 original size:11 final size:10
Alignment explanation
Indices: 10014961--10015046 Score: 65
Period size: 10 Copynumber: 8.4 Consensus size: 10
10014951 CCTCCTATCT
10014961 TTTTATTCTTA
1 TTTTATT-TTA
10014972 TTTT-TTTCTA
1 TTTTATTT-TA
10014982 TTTTA-TTTA
1 TTTTATTTTA
10014991 TTCTTATTTTA
1 TT-TTATTTTA
10015002 TTTT-TTTTAA
1 TTTTATTTT-A
10015012 TTTCTATTTTCA
1 TTT-TATTTT-A
*
10015024 TTTCAATTTTA
1 TTT-TATTTTA
10015035 --TTATTTTA
1 TTTTATTTTA
10015043 TTTT
1 TTTT
10015047 GAAAGACATA
Statistics
Matches: 63, Mismatches: 3, Indels: 19
0.74 0.04 0.22
Matches are distributed among these distances:
8 6 0.10
9 10 0.16
10 21 0.33
11 12 0.19
12 14 0.22
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTTATTTTA
Found at i:10032663 original size:23 final size:23
Alignment explanation
Indices: 10032629--10032691 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 23
10032619 TGTTTGAAAC
* * *
10032629 TTATA-AAAATGTATGAACCCTG
1 TTATACAACATGTGTGAAACCTG
* **
10032651 TTATACTACATGTGCAAAACCTG
1 TTATACAACATGTGTGAAACCTG
10032674 TTATACAACATGTGTGAA
1 TTATACAACATGTGTGAA
10032692 TCTTGTTTTG
Statistics
Matches: 31, Mismatches: 9, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
22 5 0.16
23 26 0.84
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (23 bp):
TTATACAACATGTGTGAAACCTG
Found at i:10032762 original size:17 final size:17
Alignment explanation
Indices: 10032740--10032774 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
10032730 CGAACCCTTA
10032740 ACCATGGGCGAACCTAT
1 ACCATGGGCGAACCTAT
* *
10032757 ACCATGTGTGAACCTAT
1 ACCATGGGCGAACCTAT
10032774 A
1 A
10032775 TATTATGCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (17 bp):
ACCATGGGCGAACCTAT
Found at i:10032826 original size:17 final size:17
Alignment explanation
Indices: 10032803--10032858 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 17
10032793 ATGTTGTGCA
* *
10032803 AAACCCATGTTATATGG
1 AAACCCATGATATATGC
*
10032820 GAACCCATGATATATGC
1 AAACCCATGATATATGC
* *
10032837 AAACCCATGATGTATGA
1 AAACCCATGATATATGC
10032854 AAACC
1 AAACC
10032859 TATAAGGTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.23
Consensus pattern (17 bp):
AAACCCATGATATATGC
Found at i:10035269 original size:21 final size:21
Alignment explanation
Indices: 10035243--10035282 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
10035233 AAATAATGAC
10035243 TAAAATAGT-CCTCGACAACGG
1 TAAAATAGTCCCT-GACAACGG
10035264 TAAAATAGTCCCTGACAAC
1 TAAAATAGTCCCTGACAAC
10035283 AATGCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.40, C:0.25, G:0.15, T:0.20
Consensus pattern (21 bp):
TAAAATAGTCCCTGACAACGG
Found at i:10042465 original size:30 final size:30
Alignment explanation
Indices: 10042410--10042466 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
10042400 TTAATGATCA
**
10042410 AATTCAACTCTTTTTAAAATTTTGATAAAT
1 AATTCAACTCTTTTTAAAAAATTGATAAAT
10042440 AATTCAACTCTTTTTAAAAAATTGATA
1 AATTCAACTCTTTTTAAAAAATTGATA
10042467 GCTAAATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.44
Consensus pattern (30 bp):
AATTCAACTCTTTTTAAAAAATTGATAAAT
Found at i:10042775 original size:20 final size:20
Alignment explanation
Indices: 10042737--10042775 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10042727 AAAAGATTTG
*
10042737 AAATCATAGTTGTTTAAATT
1 AAATCATAGTTGTTGAAATT
10042757 AAATCATA-TTGATTGAAAT
1 AAATCATAGTTG-TTGAAAT
10042776 ATCAATCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (20 bp):
AAATCATAGTTGTTGAAATT
Found at i:10047607 original size:14 final size:14
Alignment explanation
Indices: 10047588--10047620 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
10047578 CAATTCTTTG
10047588 GGATGGAAAAGAAA
1 GGATGGAAAAGAAA
*
10047602 GGATGGAAAAGAGA
1 GGATGGAAAAGAAA
10047616 GGATG
1 GGATG
10047621 CAATATGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.42, T:0.09
Consensus pattern (14 bp):
GGATGGAAAAGAAA
Found at i:10050643 original size:252 final size:252
Alignment explanation
Indices: 10050198--10050697 Score: 1000
Period size: 252 Copynumber: 2.0 Consensus size: 252
10050188 AGGATGAAGC
10050198 TGTCCTGGAAAGAATAGTAGTGCTCCCCAAACTAATTTGATGATAGATGACTTGGGCATTAGAGA
1 TGTCCTGGAAAGAATAGTAGTGCTCCCCAAACTAATTTGATGATAGATGACTTGGGCATTAGAGA
10050263 TGGATTAAAAGGTGGAAACGGGAATGAGATCACTGATACTAATAGTGTGACTGCTGAGTGTTAGT
66 TGGATTAAAAGGTGGAAACGGGAATGAGATCACTGATACTAATAGTGTGACTGCTGAGTGTTAGT
10050328 CATGTTTTCCATGTAGCAAATACATTATCCCAGTGGCATGCTTTTGAGCCTTTTTGTTTTCTCCA
131 CATGTTTTCCATGTAGCAAATACATTATCCCAGTGGCATGCTTTTGAGCCTTTTTGTTTTCTCCA
10050393 CTAGTCTTCTTAAGGCATTTTATTGGTGGCAGTAAATGTTGGTGATGCATTTGATGA
196 CTAGTCTTCTTAAGGCATTTTATTGGTGGCAGTAAATGTTGGTGATGCATTTGATGA
10050450 TGTCCTGGAAAGAATAGTAGTGCTCCCCAAACTAATTTGATGATAGATGACTTGGGCATTAGAGA
1 TGTCCTGGAAAGAATAGTAGTGCTCCCCAAACTAATTTGATGATAGATGACTTGGGCATTAGAGA
10050515 TGGATTAAAAGGTGGAAACGGGAATGAGATCACTGATACTAATAGTGTGACTGCTGAGTGTTAGT
66 TGGATTAAAAGGTGGAAACGGGAATGAGATCACTGATACTAATAGTGTGACTGCTGAGTGTTAGT
10050580 CATGTTTTCCATGTAGCAAATACATTATCCCAGTGGCATGCTTTTGAGCCTTTTTGTTTTCTCCA
131 CATGTTTTCCATGTAGCAAATACATTATCCCAGTGGCATGCTTTTGAGCCTTTTTGTTTTCTCCA
10050645 CTAGTCTTCTTAAGGCATTTTATTGGTGGCAGTAAATGTTGGTGATGCATTTG
196 CTAGTCTTCTTAAGGCATTTTATTGGTGGCAGTAAATGTTGGTGATGCATTTG
10050698 TTGCTTGCTT
Statistics
Matches: 248, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
252 248 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (252 bp):
TGTCCTGGAAAGAATAGTAGTGCTCCCCAAACTAATTTGATGATAGATGACTTGGGCATTAGAGA
TGGATTAAAAGGTGGAAACGGGAATGAGATCACTGATACTAATAGTGTGACTGCTGAGTGTTAGT
CATGTTTTCCATGTAGCAAATACATTATCCCAGTGGCATGCTTTTGAGCCTTTTTGTTTTCTCCA
CTAGTCTTCTTAAGGCATTTTATTGGTGGCAGTAAATGTTGGTGATGCATTTGATGA
Found at i:10052618 original size:31 final size:31
Alignment explanation
Indices: 10052580--10052638 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
10052570 ACAAACCTAG
10052580 ATGCATAACT-GATACTATCCCCTAATGCTGA
1 ATGCATAACTGGA-ACTATCCCCTAATGCTGA
10052611 ATGCATAACTGGAACTATCCCCTAATGC
1 ATGCATAACTGGAACTATCCCCTAATGC
10052639 ATACAGTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (31 bp):
ATGCATAACTGGAACTATCCCCTAATGCTGA
Found at i:10054519 original size:7 final size:7
Alignment explanation
Indices: 10054507--10054531 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10054497 TAAATATAAT
10054507 TTTTATA
1 TTTTATA
10054514 TTTTATA
1 TTTTATA
10054521 TTTTATA
1 TTTTATA
10054528 TTTT
1 TTTT
10054532 GGCTTGGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTATA
Found at i:10054653 original size:29 final size:33
Alignment explanation
Indices: 10054607--10054675 Score: 92
Period size: 30 Copynumber: 2.2 Consensus size: 33
10054597 GTTAGTGATT
10054607 TAATATAAATATATATAATT-ATTATT-TAACA
1 TAATATAAATATATATAATTAATTATTATAACA
* *
10054638 T-ATATAATTA-ATATAATTAATTTTTATAACA
1 TAATATAAATATATATAATTAATTATTATAACA
10054669 TAATATA
1 TAATATA
10054676 TTCAGGCCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 8 0.24
30 13 0.39
31 7 0.21
32 5 0.15
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (33 bp):
TAATATAAATATATATAATTAATTATTATAACA
Found at i:10071045 original size:15 final size:16
Alignment explanation
Indices: 10071013--10071047 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
10071003 AATTTTTTTA
*
10071013 TAAAATAATATAATAT
1 TAAAATAATATAAAAT
10071029 TAAAATAA-ATAAAAT
1 TAAAATAATATAAAAT
10071044 TAAA
1 TAAA
10071048 TTGAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAAATAATATAAAAT
Found at i:10072079 original size:5 final size:5
Alignment explanation
Indices: 10072069--10072093 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
10072059 AACAATAGAG
10072069 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
10072094 AATTTATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:10075850 original size:45 final size:46
Alignment explanation
Indices: 10075702--10075970 Score: 221
Period size: 45 Copynumber: 5.8 Consensus size: 46
10075692 TTTGTGTGCT
* * * *
10075702 AGTGTAAGA-CATGTCTAGGACATGCATCGACCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AG-C
* * * * *
10075748 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCATTGAGACGAAAGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGC
* *
10075795 TAGTGTAAGA-CATATTTGGGACATGCATCGGCCTCGAGATGTAAGC
1 -AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGC
*
10075841 AGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGATGT-ACC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGC
* * *
10075885 AATGTAAGACCATGTCTGGGACATGACATCGGCAC-GGATATGTGAGAGC
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGC-CTCGAGATGT-A-AGC
* *
10075934 TAGTGTAAGACCATGTCTGGGATATGGCGTCGGCCTC
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTC
10075971 AATTTCGATA
Statistics
Matches: 181, Mismatches: 26, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
44 12 0.07
45 51 0.28
46 38 0.21
47 26 0.14
48 20 0.11
49 5 0.03
50 28 0.15
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGC
Found at i:10079879 original size:38 final size:38
Alignment explanation
Indices: 10079834--10079937 Score: 140
Period size: 38 Copynumber: 2.7 Consensus size: 38
10079824 GGCTTAAAGA
* *
10079834 CCCGCAGGCTATATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCTATGTGCTGGTATTATATCCGGGTTAAAT
* *
10079872 CCTGCAGG-TTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTAT-GTGCTGGTATTATATCCGGGTTAAAT
10079910 CCCGCAGGCCTA-GTGCTGGTATTATATC
1 CCCGCAGG-CTATGTGCTGGTATTATATC
10079938 TGAGTTTAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
37 2 0.04
38 54 0.95
40 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32
Consensus pattern (38 bp):
CCCGCAGGCTATGTGCTGGTATTATATCCGGGTTAAAT
Found at i:10082543 original size:17 final size:16
Alignment explanation
Indices: 10082508--10082554 Score: 62
Period size: 15 Copynumber: 2.9 Consensus size: 16
10082498 AGTTGCAATA
10082508 AATTA-TTTTTTAAAT
1 AATTATTTTTTTAAAT
10082523 -ATTATTTTTTTAAAT
1 AATTATTTTTTTAAAT
10082538 AGATTACTTTTTTTAAA
1 A-ATTA-TTTTTTTAAA
10082555 AATGTTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.14
15 10 0.36
17 4 0.14
18 10 0.36
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (16 bp):
AATTATTTTTTTAAAT
Found at i:10083747 original size:14 final size:14
Alignment explanation
Indices: 10083728--10083768 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
10083718 TTGTTTCATT
10083728 GAAAATGACTTT-CG
1 GAAAATGA-TTTACG
10083742 GAAAATGATTTACG
1 GAAAATGATTTACG
10083756 GAAAATGATTTAC
1 GAAAATGATTTAC
10083769 TTTTCTAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 3 0.12
14 23 0.88
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (14 bp):
GAAAATGATTTACG
Found at i:10084264 original size:15 final size:15
Alignment explanation
Indices: 10084224--10084267 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
10084214 ACTGCAGAAC
*
10084224 ATTTATTATTAATAT
1 ATTTATTATTAAAAT
10084239 ATTTA--A-T-AAAT
1 ATTTATTATTAAAAT
10084250 ATTTATTATTAAAAT
1 ATTTATTATTAAAAT
10084265 ATT
1 ATT
10084268 GAATATTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 8
0.73 0.03 0.24
Matches are distributed among these distances:
11 8 0.33
12 1 0.04
13 2 0.08
14 1 0.04
15 12 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTATTATTAAAAT
Found at i:10084272 original size:7 final size:7
Alignment explanation
Indices: 10084262--10084288 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
10084252 TTATTATTAA
10084262 AATATTG
1 AATATTG
10084269 AATATTG
1 AATATTG
10084276 AATATTG
1 AATATTG
10084283 AATATT
1 AATATT
10084289 TTTAATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (7 bp):
AATATTG
Found at i:10084339 original size:16 final size:14
Alignment explanation
Indices: 10084308--10084348 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
10084298 ATGTGATCAA
10084308 TATTA-TTTAAAAT
1 TATTATTTTAAAAT
10084321 TATTATTTTAAAAT
1 TATTATTTTAAAAT
10084335 T-TTATTATTAAAAT
1 TATTATT-TTAAAAT
10084349 AAAATTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TATTATTTTAAAAT
Found at i:10084398 original size:22 final size:21
Alignment explanation
Indices: 10084352--10084417 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
10084342 TTAAAATAAA
* * *
10084352 ATTAAAATATTGAATAATTTT
1 ATTAAAATAATAAATTATTTT
10084373 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTAT-TTT
* * *
10084395 ATTATATTAATAATTTATTTT
1 ATTAAAATAATAAATTATTTT
10084416 AT
1 AT
10084418 GATTAAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 20 0.53
22 18 0.47
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
ATTAAAATAATAAATTATTTT
Found at i:10084920 original size:55 final size:54
Alignment explanation
Indices: 10084841--10084947 Score: 187
Period size: 55 Copynumber: 2.0 Consensus size: 54
10084831 CTGTAAGGCA
*
10084841 TTTTCCATCTCCTCTTCATCCAGGTAAGTCTTCTTTTTCTTCCGTTCTTCAACT
1 TTTTCCATCTCCTCTTCATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAACT
*
10084895 TTTTCCATCTCCTTCTTTATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAA
1 TTTTCCATCTCC-TCTTCATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAA
10084948 ATCTCTTCCC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
54 12 0.24
55 38 0.76
ACGTcount: A:0.13, C:0.31, G:0.07, T:0.49
Consensus pattern (54 bp):
TTTTCCATCTCCTCTTCATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAACT
Found at i:10089884 original size:15 final size:15
Alignment explanation
Indices: 10089866--10089905 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
10089856 ACTTCATTCC
* *
10089866 CTTTAATCATGGTAA
1 CTTTAGTCATAGTAA
10089881 CTTTAGTCATAGTAA
1 CTTTAGTCATAGTAA
10089896 CTTTAGTCAT
1 CTTTAGTCAT
10089906 TGCTTGAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (15 bp):
CTTTAGTCATAGTAA
Found at i:10091458 original size:27 final size:27
Alignment explanation
Indices: 10091428--10091500 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
10091418 TGTCTTGAAT
*
10091428 TTGTTACATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
10091455 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTCAAGC
10091487 TTGTTAGATATTGA
1 TTGTTAGATATTGA
10091501 AATAATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 13 0.33
32 26 0.67
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:10091480 original size:32 final size:32
Alignment explanation
Indices: 10091441--10091501 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
10091431 TTACATATTG
10091441 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
*
10091473 ATTATGTTTTAAGCTTGTTAGATATTGAA
1 ATTATGTTTCAAGCTTGTTAGATATTGAA
10091502 ATAATTGACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (32 bp):
ATTATGTTTCAAGCTTGTTAGATATTGAATTT
Found at i:10092835 original size:16 final size:18
Alignment explanation
Indices: 10092807--10092848 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
10092797 CAAACAATGA
10092807 AAATATAATAAA-TTCTT
1 AAATATAATAAATTTCTT
10092824 AAATAT-ATAAATTTCTT
1 AAATATAATAAATTTCTT
10092841 AAA-ATAAT
1 AAATATAAT
10092849 TTTTCAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.30
17 16 0.70
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATATAATAAATTTCTT
Found at i:10092974 original size:20 final size:19
Alignment explanation
Indices: 10092920--10092967 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
10092910 ATCCAAACAC
*
10092920 CAAAAATATAAATTA-TTTT
1 CAAAAAAAT-AATTATTTTT
*
10092939 CAAAAAAGTAATTATTTTT
1 CAAAAAAATAATTATTTTT
10092958 CAAAAAAATA
1 CAAAAAAATA
10092968 TTTTATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.35
Consensus pattern (19 bp):
CAAAAAAATAATTATTTTT
Found at i:10093438 original size:3 final size:3
Alignment explanation
Indices: 10093430--10093483 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
10093420 TTTCTTTAAG
10093430 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10093478 ATT ATT
1 ATT ATT
10093484 TTGTTTTAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:10099402 original size:3 final size:3
Alignment explanation
Indices: 10099394--10099418 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10099384 CCAAAGAGAG
10099394 TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA T
10099419 AGTGGTGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:10100897 original size:9 final size:10
Alignment explanation
Indices: 10100877--10100911 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
10100867 ATTTATTATT
10100877 TGTTTTATAA
1 TGTTTTATAA
10100887 TGTTTTA-AA
1 TGTTTTATAA
10100896 TGTTTTATAA
1 TGTTTTATAA
*
10100906 TATTTT
1 TGTTTT
10100912 TTATTCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.39
10 14 0.61
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.63
Consensus pattern (10 bp):
TGTTTTATAA
Found at i:10107257 original size:19 final size:17
Alignment explanation
Indices: 10107235--10107277 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
10107225 AAAAGACTTA
10107235 ATATAAATAATACATATAT
1 ATATAAATAATA-ATA-AT
*
10107254 ATATAAATATTAATAAT
1 ATATAAATAATAATAAT
10107271 ATATAAA
1 ATATAAA
10107278 AGTGTTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.39
18 3 0.13
19 11 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
ATATAAATAATAATAAT
Found at i:10109232 original size:176 final size:175
Alignment explanation
Indices: 10108906--10109242 Score: 498
Period size: 176 Copynumber: 1.9 Consensus size: 175
10108896 TATTTTCAGT
* * *
10108906 CTGCTCTACTGCAACTTCAGGAGATAAGACCTGTGGCTTAAGTCTGCTCCATTATCGATACATGG
1 CTGCTCCACTGCAACTTCAGGAGACAAGACCTGTGGCTTAAATCTGCTCCATTATCGATACATGG
*
10108971 AGATAAGATTCACCGTCTTCGATCTGCTTCACTATTGCTTAAGGAGATAAGATCTGCAACTTTCA
66 AGATAAGATTCACCGTCTTCGATCTGCTTCACTACTGCTTAAGGAGATAAGATCTGCAACTTTCA
* * **
10109036 GTCTGCTCTATTGTAACTTCAGAGAGATAAGACTTGTATTTGAGC
131 GTCTGCTCCACTACAACTTCAGAGAGATAAGACTTGTATTTGAGC
* * * *
10109081 CTGCTCCACTGCAATTTCAGGGAGACAAG-GCTAGTGGCTTAAATTTGCTCCATTGTCGATACAT
1 CTGCTCCACTGCAACTTCA-GGAGACAAGACCT-GTGGCTTAAATCTGCTCCATTATCGATACAT
* *
10109145 GGAGATAAGATTCACCGTCTTCGATCTG-TTCCACTACTGCTTAGGGAGATAAGATCTGTAACTT
64 GGAGATAAGATTCACCGTCTTCGATCTGCTT-CACTACTGCTTAAGGAGATAAGATCTGCAACTT
*
10109209 TCAGTCTGCTCCACTACAACTTCAGGGAGATAAG
128 TCAGTCTGCTCCACTACAACTTCAGAGAGATAAG
10109243 GCTAGTGGCT
Statistics
Matches: 144, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
175 21 0.15
176 123 0.85
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (175 bp):
CTGCTCCACTGCAACTTCAGGAGACAAGACCTGTGGCTTAAATCTGCTCCATTATCGATACATGG
AGATAAGATTCACCGTCTTCGATCTGCTTCACTACTGCTTAAGGAGATAAGATCTGCAACTTTCA
GTCTGCTCCACTACAACTTCAGAGAGATAAGACTTGTATTTGAGC
Found at i:10109306 original size:89 final size:88
Alignment explanation
Indices: 10109213--10109508 Score: 249
Period size: 89 Copynumber: 3.3 Consensus size: 88
10109203 TAACTTTCAG
10109213 TCTGCTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACAT
1 TCTGCTCCACTACAACTT-AGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACAT
*
10109278 GGAGATAAGATTTACCGTCTTCGA
65 GGAGATAAGATTTACCATCTTCGA
* * *** * * * * * * **
10109302 TCTGCTCCACTACTACTTAGGGAGATAAGATCTA-TAATTTCCAGTATACTCCACTACAACTTTA
1 TCTGCTCCACTACAACTTAGGGAGATAAG-GCTAGTGGCTT-AAATCTGCTCCATTGC--CGATA
** * * *
10109366 -GGGGGGATAAGAATTA-TATCTT-GAA
62 CATGGAGATAAGATTTACCATCTTCG-A
* * * * *
10109391 CCTTCTCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCTATTGCCGATACAT
1 TCTGCTCCACTACAAC-TTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACAT
* *
10109456 GGAGATAAGATTTGCCATCTTCTA
65 GGAGATAAGATTTACCATCTTCGA
**
10109480 TCTGCTCCACTACTGCTTAGGGAGATAAG
1 TCTGCTCCACTACAACTTAGGGAGATAAG
10109509 ATCTTTGAAT
Statistics
Matches: 148, Mismatches: 49, Indels: 21
0.68 0.22 0.10
Matches are distributed among these distances:
87 3 0.02
88 39 0.26
89 75 0.51
90 28 0.19
91 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (88 bp):
TCTGCTCCACTACAACTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACATG
GAGATAAGATTTACCATCTTCGA
Found at i:10109321 original size:133 final size:133
Alignment explanation
Indices: 10109081--10109368 Score: 452
Period size: 133 Copynumber: 2.2 Consensus size: 133
10109071 GTATTTGAGC
* * * *
10109081 CTGCTCCACTGCAATTTCAGGGAGACAAGGCTAGTGGCTTAAATTTGCTCCATTGTCGATACATG
1 CTGCTCCACTACAACTTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACATG
* * *
10109146 GAGATAAGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAACTTT-
66 GAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTATAA-TTTC
10109210 CAGT
130 CAGT
*
10109214 CTGCTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACATG
1 CTGCTCCACTACAACTTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACATG
*
10109279 GAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTATAATTTCC
66 GAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTATAATTTCC
10109344 AGT
131 AGT
* * *
10109347 ATACTCCACTACAACTTTAGGG
1 CTGCTCCACTACAACTTCAGGG
10109369 GGGATAAGAA
Statistics
Matches: 142, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 3 0.02
133 139 0.98
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (133 bp):
CTGCTCCACTACAACTTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACATG
GAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTATAATTTCC
AGT
Found at i:10109326 original size:44 final size:44
Alignment explanation
Indices: 10109145--10109332 Score: 136
Period size: 44 Copynumber: 4.2 Consensus size: 44
10109135 GTCGATACAT
* * *
10109145 GGAGATAAGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAG
1 GGAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTAG
* *
10109189 GGAGATAAGATCTGTAAC-T-TTC-AGTCTGCTCCACTACAACTTCAG
1 GGAGATAAGAT-T-TACCGTCTTCGA-TCTGCTCCACTACTACTT-AG
** ** * ** * * *
10109234 GGAGATAAG-GCTAGTGGCTTAAATCTGCTCCATTGCCGATAC--AT
1 GGAGATAAGATTTACCGTCTTCGATCTGCTCCACT-AC--TACTTAG
10109278 GGAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTAG
1 GGAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTAG
10109322 GGAGATAAGAT
1 GGAGATAAGAT
10109333 CTATAATTTC
Statistics
Matches: 106, Mismatches: 25, Indels: 26
0.68 0.16 0.17
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 64 0.60
45 32 0.30
46 2 0.02
47 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (44 bp):
GGAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTAG
Found at i:10117963 original size:46 final size:46
Alignment explanation
Indices: 10117906--10118225 Score: 471
Period size: 46 Copynumber: 7.0 Consensus size: 46
10117896 AGTGTGCTCT
* * *
10117906 CTGATATGAAATGTGTAAGACCTTGGTTAAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
10117952 CTGATAAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
10117998 CTGATATGAAATGTGTAAGACCATGGTCGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
10118044 CTGATATGAAATGTGTAAGACCATCGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
10118090 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
10118136 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
10118182 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
10118226 TCATGTCAAA
Statistics
Matches: 251, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 250 1.00
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:10123707 original size:26 final size:24
Alignment explanation
Indices: 10123677--10123726 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
10123667 AAATAAAAAA
*
10123677 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
10123703 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
10123727 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:10123746 original size:21 final size:21
Alignment explanation
Indices: 10123697--10123755 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
10123687 ATAATAAATC
*
10123697 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
10123717 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
10123739 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
10123756 TTCTTAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:10125788 original size:19 final size:17
Alignment explanation
Indices: 10125766--10125808 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
10125756 AAAAGACTTA
10125766 ATATAAATAATACATATAT
1 ATATAAATAATA-ATA-AT
*
10125785 ATATAAATATTAATAAT
1 ATATAAATAATAATAAT
10125802 ATATAAA
1 ATATAAA
10125809 AGTGTTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.39
18 3 0.13
19 11 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
ATATAAATAATAATAAT
Found at i:10125978 original size:13 final size:13
Alignment explanation
Indices: 10125960--10125989 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10125950 AAAATGGAAC
10125960 AAAATAACATGTT
1 AAAATAACATGTT
*
10125973 AAAATAATATGTT
1 AAAATAACATGTT
10125986 AAAA
1 AAAA
10125990 AGATGAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (13 bp):
AAAATAACATGTT
Found at i:10131338 original size:14 final size:15
Alignment explanation
Indices: 10131321--10131350 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10131311 CGTTATTCAA
10131321 AAAATAT-ATTTTAC
1 AAAATATAATTTTAC
10131335 AAAATATAATTTTAC
1 AAAATATAATTTTAC
10131350 A
1 A
10131351 TTTCAAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATATAATTTTAC
Found at i:10132063 original size:15 final size:14
Alignment explanation
Indices: 10132045--10132082 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
10132035 TTATTTTTTA
10132045 AAAAAAATTAAATAC
1 AAAAAAATTAAAT-C
*
10132060 AAAAAAA-TAAATT
1 AAAAAAATTAAATC
10132073 AAAAAAATTA
1 AAAAAAATTA
10132083 CTGACCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 7 0.33
14 7 0.33
15 7 0.33
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAAAAATTAAATC
Found at i:10132065 original size:14 final size:14
Alignment explanation
Indices: 10132045--10132082 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
10132035 TTATTTTTTA
10132045 AAAAAAATTAAA-T
1 AAAAAAATTAAATT
*
10132058 ACAAAAAAATAAATT
1 A-AAAAAATTAAATT
10132073 AAAAAAATTA
1 AAAAAAATTA
10132083 CTGACCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 1 0.05
14 18 0.86
15 2 0.10
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAAAAATTAAATT
Found at i:10137914 original size:594 final size:598
Alignment explanation
Indices: 10136786--10137983 Score: 2163
Period size: 594 Copynumber: 2.0 Consensus size: 598
10136776 AAAGGTTAAT
10136786 GAAACAAATTTAAACAACTAAGATTGACCCTAGAAGTTAGTAGTAATCAGCACCTATAACTACAC
1 GAAACAAATTTAAACAACTAAGATTGACCCTAGAAGTTAGTAGTAATCAGCACCTATAACTACAC
10136851 GACTCTGAGTCTGAAAATAGCGAGTTAAGTGAGCCACCCACCTCCAATGTGATGAAATACATCCA
66 GACTCTGAGTCTGAAAATAGCGAGTTAAGTGAGCCACCCACCTCCAATGTGATGAAATACATCCA
10136916 TGCATGGACATGGGATTTTATGCTCTCAAATACATCAATACGAACAGAAAATTCATAGAACGAAT
131 TGCATGGACATGGGATTTTATGCTCTCAAATACATCAATACGAACAGAAAATTCATAGAACGAAT
*
10136981 TGCTAAACCCCCTTGATTGTATAGCTTAAATAGCATTCTCAAGTTTTCAAGAATAAGCTCTTTTC
196 TGCTAAACCCCCTAGATTGTATAGCTTAAATAGCATTCTCAAGTTTTCAAGAATAAGCTCTTTTC
* *
10137046 CCCTTCAAATATCATCTTTCCAGTAGCATCTAGACTTTCTTTCAGTAAATGTTTTACAAGGCTAA
261 CCCTTCAAACATCACCTTTCCAGTAGCATCTAGACTTTCTTTCAGTAAATGTTTTACAAGGCTAA
*
10137111 ATGGAAAATATTAAAGGTGGGAAAGAGGTAGCTTGTATGTAGAGAAAAAAGGATTCCTAGGTGAT
326 ATGGAAAATATTAAAGGTGGGAAAGAGGTAGCTTGTATGTAGAGAAAAAAGGAGTCCTAGGTGAT
*
10137176 TCTGTCCCGTTATGCTATATTGTGTTTCACCATATCCATAATACACAATTACTTTGAGGTCTTAA
391 TCTGTCCCGCTATGCTATATTGTGTTTCACCATATCCATAATACACAATTACTTTGAGGTCTTAA
** *
10137241 CCATATAAATTTGGTAGGTCGCATCAACATCAGTTTTTATGTACTATAAATTTTATATGTTGTTT
456 CCATATAAATTTGGTAGGTCGCATCAACATCAGTTTTTATGTACTATAAATTTTATACATTGATT
10137306 TTTTTAATGTTCAGAGGAAGAGAAAAGGGGGAAA-GGG-G-C-TGAATTTGGTTTCAAGTCACAT
521 TTTTTAATGTTCAGAGGAAGAGAAAAGGGGGAAAGGGGAGACTTGAATTTGGTTTCAAGTCACAT
10137367 CAATGAGGCATTA
586 CAATGAGGCATTA
* * *
10137380 GAAACAACTTTAAACAACTAAGATTGACCCTAGAAGTTAGTAGTAATCAGCATCTATAACTACAT
1 GAAACAAATTTAAACAACTAAGATTGACCCTAGAAGTTAGTAGTAATCAGCACCTATAACTACAC
*
10137445 GACTCTGAGTCTGAAAATAGTGAGTTAAGTGAGCCACCCACCTCCAATGTGATGAAATACATCCA
66 GACTCTGAGTCTGAAAATAGCGAGTTAAGTGAGCCACCCACCTCCAATGTGATGAAATACATCCA
* *
10137510 TGCATGGGCATGGGATTTTATGCTCTCAAATACATCAATACGAACAGAAAATTCATAGAATGAAT
131 TGCATGGACATGGGATTTTATGCTCTCAAATACATCAATACGAACAGAAAATTCATAGAACGAAT
10137575 TGCTAAACCCCCTAGATTGTATAGCTTAAATAGCATTCTCAAGTTTTCAAGAATAAGCTCTTTTC
196 TGCTAAACCCCCTAGATTGTATAGCTTAAATAGCATTCTCAAGTTTTCAAGAATAAGCTCTTTTC
10137640 CCCTTCAAACATCACCTTTCCAGTAGCATCTAGACTTTCTTTCAGTAAATGTTTTAC-AGTGCTA
261 CCCTTCAAACATCACCTTTCCAGTAGCATCTAGACTTTCTTTCAGTAAATGTTTTACAAG-GCTA
* *
10137704 AATGGAAAATTTTAAAGGTGGGAAAGAGGTAGCTTGTATGTAGAGAAAAAATGAGTCCTAGGTGA
325 AATGGAAAATATTAAAGGTGGGAAAGAGGTAGCTTGTATGTAGAGAAAAAAGGAGTCCTAGGTGA
* *
10137769 TTCTGTCCTGCTATGCTATATTGTGTTTCACCATATCCATAATACACAATTCCTTTGAGGTCTTA
390 TTCTGTCCCGCTATGCTATATTGTGTTTCACCATATCCATAATACACAATTACTTTGAGGTCTTA
*
10137834 ACCATATAAATTTGGTAGGTCGCATTAACATCAGTTTTTATGTACTATAAATTTTATACATTGAT
455 ACCATATAAATTTGGTAGGTCGCATCAACATCAGTTTTTATGTACTATAAATTTTATACATTGAT
10137899 TTTTTTAATGTTCAGAGGAAGAGAAAAGGGGGAAAGGGGGAGACCTTGAATTTGGTTTCAAGTCA
520 TTTTTTAATGTTCAGAGGAAGAGAAAAGGGGGAAA-GGGGAGA-CTTGAATTTGGTTTCAAGTCA
10137964 CATCAATGAGGCATTA
583 CATCAATGAGGCATTA
10137980 GAAA
1 GAAA
10137984 AGAAAAACAA
Statistics
Matches: 578, Mismatches: 19, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
593 2 0.00
594 532 0.92
596 3 0.01
597 1 0.00
599 1 0.00
600 39 0.07
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (598 bp):
GAAACAAATTTAAACAACTAAGATTGACCCTAGAAGTTAGTAGTAATCAGCACCTATAACTACAC
GACTCTGAGTCTGAAAATAGCGAGTTAAGTGAGCCACCCACCTCCAATGTGATGAAATACATCCA
TGCATGGACATGGGATTTTATGCTCTCAAATACATCAATACGAACAGAAAATTCATAGAACGAAT
TGCTAAACCCCCTAGATTGTATAGCTTAAATAGCATTCTCAAGTTTTCAAGAATAAGCTCTTTTC
CCCTTCAAACATCACCTTTCCAGTAGCATCTAGACTTTCTTTCAGTAAATGTTTTACAAGGCTAA
ATGGAAAATATTAAAGGTGGGAAAGAGGTAGCTTGTATGTAGAGAAAAAAGGAGTCCTAGGTGAT
TCTGTCCCGCTATGCTATATTGTGTTTCACCATATCCATAATACACAATTACTTTGAGGTCTTAA
CCATATAAATTTGGTAGGTCGCATCAACATCAGTTTTTATGTACTATAAATTTTATACATTGATT
TTTTTAATGTTCAGAGGAAGAGAAAAGGGGGAAAGGGGAGACTTGAATTTGGTTTCAAGTCACAT
CAATGAGGCATTA
Found at i:10147806 original size:16 final size:15
Alignment explanation
Indices: 10147763--10147808 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
10147753 TATCATCATC
*
10147763 TCATATTTTCATATA
1 TCATATTTTCATGTA
*
10147778 TCA-ATTATCATGTA
1 TCATATTTTCATGTA
10147792 TCATCATTTTCATGTA
1 TCAT-ATTTTCATGTA
10147808 T
1 T
10147809 TTCAGGCAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
14 12 0.46
15 3 0.12
16 11 0.42
ACGTcount: A:0.30, C:0.15, G:0.04, T:0.50
Consensus pattern (15 bp):
TCATATTTTCATGTA
Found at i:10148191 original size:24 final size:24
Alignment explanation
Indices: 10148155--10148206 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
10148145 GAGTTCAAGC
*
10148155 GAGCCATGTCAGGAAGCTCAT-TA
1 GAGCCATATCAGGAAGCTCATGTA
*
10148178 GAGCCTATATCAGGACGCTCATGTA
1 GAGCC-ATATCAGGAAGCTCATGTA
10148203 GAGC
1 GAGC
10148207 TACGCTTGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.20
24 14 0.56
25 6 0.24
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCATGTA
Found at i:10151884 original size:8 final size:8
Alignment explanation
Indices: 10151871--10151899 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
10151861 TTTTACTAAT
10151871 ATAATATA
1 ATAATATA
10151879 ATAATATA
1 ATAATATA
10151887 ATAATAT-
1 ATAATATA
10151894 ATAATA
1 ATAATA
10151900 CTTACTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAATATA
Found at i:10151885 original size:13 final size:15
Alignment explanation
Indices: 10151867--10151899 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
10151857 TAAATTTTAC
10151867 TAATATAAT-ATA-A
1 TAATATAATAATATA
10151880 TAATATAATAATATA
1 TAATATAATAATATA
10151895 TAATA
1 TAATA
10151900 CTTACTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 3 0.17
15 6 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATATAATAATATA
Found at i:10152610 original size:169 final size:169
Alignment explanation
Indices: 10152326--10152633 Score: 501
Period size: 169 Copynumber: 1.8 Consensus size: 169
10152316 GCTTGGAGAG
* * *
10152326 ATTGAAGGCTCATCTGCAAAGCATGACAATTATGGAATGTAATCTTTGAAGATATGCAATCTTAG
1 ATTGAAGGCTCATCTACAAAGCATGACAATTATAGAATGTAATCTTTGAAGATATGCAATCTTAC
* * * *
10152391 ATATTACTTGTAACCTTAGAAGATATGATTTTGTAATCTTAGATATTTGATTTGTAGATAGCTTT
66 ATATTACTTGTAACCTTAAAAGATATGATTTTGTAATCTTAGAGATTTGATTTGTAGACAACTTT
*
10152456 TAATTTTAACCATTGATGGAGTTTAATCTATAGTATTGA
131 TAATCTTAACCATTGATGGAGTTTAATCTATAGTATTGA
10152495 ATTGAAGGC-CAATCTACAAAGCATGACAATTATAGAATGTAATCTTTGAAGATATGCAATCTTA
1 ATTGAAGGCTC-ATCTACAAAGCATGACAATTATAGAATGTAATCTTTGAAGATATGCAATCTTA
* * *
10152559 CATTTTACTTGTAATCTTAAAATATATGATTTTGTAATCTTAGAGATTTGATTTGTAGACAACTT
65 CATATTACTTGTAACCTTAAAAGATATGATTTTGTAATCTTAGAGATTTGATTTGTAGACAACTT
10152624 TTAATCTTAA
130 TTAATCTTAA
10152634 TTGTTGATGT
Statistics
Matches: 127, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
168 1 0.01
169 126 0.99
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (169 bp):
ATTGAAGGCTCATCTACAAAGCATGACAATTATAGAATGTAATCTTTGAAGATATGCAATCTTAC
ATATTACTTGTAACCTTAAAAGATATGATTTTGTAATCTTAGAGATTTGATTTGTAGACAACTTT
TAATCTTAACCATTGATGGAGTTTAATCTATAGTATTGA
Found at i:10153697 original size:125 final size:127
Alignment explanation
Indices: 10153489--10153750 Score: 307
Period size: 125 Copynumber: 2.1 Consensus size: 127
10153479 GAGTATGAGC
* * *
10153489 TTGCCTTCTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGTATATTCGGATATTTAGAT
1 TTGCCTT-TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGATACTTAGAT
* * * * * *
10153554 CAAACAGAAAATCGAAA-CCAAGTACATTAGGACACGACTACTCGAATTTCTAATTACCGAATA
65 CAAACAGAAAAACGAAACCCAA-TACATTAAGACACAACTACTCGAATTTCCAAGTACCAAATA
* * *
10153617 TTGCCTTTATTTTATTTAAAACTCATGTATTTTAA-TTT-AAAAGGATAATCGGTTACTTAGATC
1 TTGCCTTTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGATACTTAGATC
* * * * *
10153680 -AACTGAAAAACTTAAACCCAATACGTTAAGACACAATTTCTCGAATTTCCAAGTACCAAATA
66 AAACAGAAAAAC-GAAACCCAATACATTAAGACACAACTACTCGAATTTCCAAGTACCAAATA
*
10153742 TTTCCTTTA
1 TTGCCTTTA
10153751 CTTGAAAAAT
Statistics
Matches: 114, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
124 9 0.08
125 65 0.57
126 7 0.06
127 26 0.23
128 7 0.06
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (127 bp):
TTGCCTTTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGATACTTAGATC
AAACAGAAAAACGAAACCCAATACATTAAGACACAACTACTCGAATTTCCAAGTACCAAATA
Found at i:10153948 original size:19 final size:19
Alignment explanation
Indices: 10153911--10153967 Score: 71
Period size: 19 Copynumber: 3.1 Consensus size: 19
10153901 AATAGGACGG
*
10153911 ATAAT-ATAAATAATAGTA
1 ATAATAATAAAAAATAGTA
*
10153929 ATAATAATAAAAAATGGTA
1 ATAATAATAAAAAATAGTA
* *
10153948 ATAATATTAAAAAAAAGTA
1 ATAATAATAAAAAATAGTA
10153967 A
1 A
10153968 ATATAATGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
18 5 0.15
19 28 0.85
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (19 bp):
ATAATAATAAAAAATAGTA
Found at i:10154043 original size:3 final size:3
Alignment explanation
Indices: 10154028--10154346 Score: 123
Period size: 3 Copynumber: 107.3 Consensus size: 3
10154018 GATAATTGAA
*
10154028 AAT AAT GAT AAT AAT AAT GGAAGT AAT GAA- AAT AAT AAT AAT AGA-
1 AAT AAT AAT AAT AAT AAT --AA-T AAT -AAT AAT AAT AAT AAT A-AT
* * *
10154073 AAC AAT AGT AAT AA- AAGT AAT AAT AA- AAT AA- AA- AAT AAC AAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * ** *
10154115 GAT ACATT AAT AAT AAT AAT -AT ATGT GCT AAT AAT AAT AAC AAT -AT
1 AAT A-A-T AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* * * * *
10154161 AA- AAA AAT AA- AAT AAT ACT -AT ATT AAT AAA AAT AAT AAT AGT AAGTT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA--T
* * * * *
10154208 AAT AAT AAT AGT AAT AAA AAG GA- AAT AAT AAT AAT AA- AAT AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
10154254 AAT ACT ATT ACGTT ACT ACT AAT AAT AA- AA- AAG AA- AAT AGT AAT
1 AAT AAT AAT A--AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
10154298 AGT -AT ATAG AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAA AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10154343 AAT A
1 AAT A
10154347 CTCTCCCCCT
Statistics
Matches: 240, Mismatches: 47, Indels: 58
0.70 0.14 0.17
Matches are distributed among these distances:
2 30 0.12
3 187 0.78
4 12 0.05
5 10 0.04
6 1 0.00
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:10154069 original size:15 final size:14
Alignment explanation
Indices: 10154028--10154257 Score: 85
Period size: 14 Copynumber: 15.7 Consensus size: 14
10154018 GATAATTGAA
*
10154028 AATAATGATAATAAT
1 AATAATAATAA-AAT
10154043 AATGGAAGTAATGAAAAT
1 AAT--AA-TAAT-AAAAT
*
10154061 AATAATAATAGAAAC
1 AATAATAATA-AAAT
*
10154076 AATAGTAATAAAAGT
1 AATAATAATAAAA-T
10154091 AATAATAAAATAAAA-
1 AATAAT--AATAAAAT
* *
10154106 AATAACAATGATACATT
1 AATAATAAT-A-A-AAT
*
10154123 AATAATAATAATAT
1 AATAATAATAAAAT
* **
10154137 ATGTGCTAATAATAAT
1 A-ATAATAATAA-AAT
* *
10154153 AACAAT-ATAAAAA
1 AATAATAATAAAAT
*
10154166 AATAA-AATAATACT
1 AATAATAATAA-AAT
*
10154180 -ATATTAATAAAAAT
1 AATAATAAT-AAAAT
* **
10154194 AATAATAGTAAGTT
1 AATAATAATAAAAT
*
10154208 AATAATAAT--AGT
1 AATAATAATAAAAT
* **
10154220 AATAAAAAGGAAAT
1 AATAATAATAAAAT
10154234 AATAATAATAAAAT
1 AATAATAATAAAAT
*
10154248 AATAAAAATA
1 AATAATAATA
10154258 CTATTACGTT
Statistics
Matches: 156, Mismatches: 38, Indels: 43
0.66 0.16 0.18
Matches are distributed among these distances:
12 8 0.05
13 16 0.10
14 50 0.32
15 47 0.30
16 7 0.04
17 17 0.11
18 9 0.06
19 2 0.01
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (14 bp):
AATAATAATAAAAT
Found at i:10154197 original size:23 final size:23
Alignment explanation
Indices: 10154144--10154223 Score: 67
Period size: 23 Copynumber: 3.4 Consensus size: 23
10154134 TATATGTGCT
*
10154144 AATAATAATAACAATA-TAA-AAA
1 AATAATAAT-ACTATATTAATAAA
10154166 AATAAAATAATACTATATTAATAAA
1 AAT--AATAATACTATATTAATAAA
* *
10154191 AATAATAATAGTA-AGTTAATAAT
1 AATAATAATACTATA-TTAATAAA
*
10154214 AATAGTAATA
1 AATAATAATA
10154224 AAAAGGAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
22 4 0.08
23 30 0.61
24 9 0.18
25 6 0.12
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.30
Consensus pattern (23 bp):
AATAATAATACTATATTAATAAA
Found at i:10154787 original size:12 final size:12
Alignment explanation
Indices: 10154770--10154814 Score: 67
Period size: 12 Copynumber: 3.9 Consensus size: 12
10154760 GTTAGTGGGG
10154770 TGGTTTAGTGGT
1 TGGTTTAGTGGT
10154782 TGGTTTAGTGG-
1 TGGTTTAGTGGT
*
10154793 -GGTGTAGTGGT
1 TGGTTTAGTGGT
10154804 TGGTTTAGTGG
1 TGGTTTAGTGG
10154815 GGTGTTAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 9 0.31
12 20 0.69
ACGTcount: A:0.09, C:0.00, G:0.47, T:0.44
Consensus pattern (12 bp):
TGGTTTAGTGGT
Found at i:10154803 original size:22 final size:22
Alignment explanation
Indices: 10154761--10154819 Score: 91
Period size: 22 Copynumber: 2.5 Consensus size: 22
10154751 GGTGATAAAG
10154761 TTAGTGGGGTGGTTTAGTGGTTGGT
1 TTAGTGGGGT-G--TAGTGGTTGGT
10154786 TTAGTGGGGTGTAGTGGTTGGT
1 TTAGTGGGGTGTAGTGGTTGGT
10154808 TTAGTGGGGTGT
1 TTAGTGGGGTGT
10154820 TAATTGGACT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
22 23 0.68
24 1 0.03
25 10 0.29
ACGTcount: A:0.08, C:0.00, G:0.49, T:0.42
Consensus pattern (22 bp):
TTAGTGGGGTGTAGTGGTTGGT
Found at i:10155323 original size:89 final size:88
Alignment explanation
Indices: 10155115--10155493 Score: 252
Period size: 89 Copynumber: 4.2 Consensus size: 88
10155105 CTTAATCCGT
* * * * * * *
10155115 TCCACTACAACTTCAGGTAGATAGGATTAGCT-GTCTTC-AGTCTACTCTGCTACAACTTCAGGG
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TAG-CTTCGA-TCTACTCCGCTAGAACTTCAAGG
* ** * *
10155178 AGATAAGACTTG-TGGCTTCAATCTGT
63 AGATAAGAATTGAT-ATTTCAACCTGC
* * *
10155204 TCCAATGTAATTTCAGGGAGA-AGAGATTTGTAGCTTCGATCTACTCCGCTAGAACTTCAAGGAG
1 TCCACTGCAACTTCAGGGAGATA-AGATTTGTAGCTTCGATCTACTCCGCTAGAACTTCAAGGAG
*
10155268 GTAAGAATTGATAATTTCAACCTGC
65 ATAAGAATTGAT-ATTTCAACCTGC
* * * * * * *
10155293 TCCACTACGACTTCAGGGAGATAAGGTTTGTGGTCTTC-AGTCCACTCCACT-GCAACTCCAAGG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTAG-CTTCGA-TCTACTCCGCTAG-AACTTCAAGG
* * * *
10155356 AGATAAGACTTGCTACTTCAACCTAC
63 AGATAAGAATTGATATTTCAACCTGC
* * ** * * * * *
10155382 TCTATTGCAACTTCAGAAAGATAAGATTTACTATCTTTGATCTGCTCCGCTATAACTTCAAGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTT-GTAGCTTCGATCTACTCCGCTAGAACTTCAAGGAG
*
10155447 ATAAG-ATCT-ACTATCTTCAATCTGC
65 ATAAGAAT-TGA-TAT-TTCAACCTGC
10155472 TCCACTGCAACTTCAGGGAGAT
1 TCCACTGCAACTTCAGGGAGAT
10155494 GAAACTTGTA
Statistics
Matches: 219, Mismatches: 57, Indels: 27
0.72 0.19 0.09
Matches are distributed among these distances:
88 37 0.17
89 120 0.55
90 62 0.28
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (88 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCGATCTACTCCGCTAGAACTTCAAGGAGA
TAAGAATTGATATTTCAACCTGC
Found at i:10155427 original size:134 final size:133
Alignment explanation
Indices: 10155289--10155588 Score: 302
Period size: 134 Copynumber: 2.2 Consensus size: 133
10155279 TAATTTCAAC
* * * ** * *
10155289 CTGCTCCACTACGACTTCAGGGAGATAAGGT-TTGTGGTCTTCAGTCCACTCCACTGCAACTCCA
1 CTGCTCCACTACAACTTCAAGGAGATAAGATCTACT-ATCTTCAATCCACTCCACTGCAACTCCA
*
10155353 AGGAGAT-AAGACTTGCT-ACTTCAACCTACTCTATTGCAACTTCAGAAAGATAAGATTTACTAT
65 AGGAGATGAA-ACTTG-TAACTTCAACCTACTCT-CTGCAACTTCAGAAAGATAAGATTTACTAT
10155416 CTTTGAT
127 CTTTGAT
* * ** * *
10155423 CTGCTCCGCTATAACTTCAAGGAGATAAGATCTACTATCTTCAATCTGCTCCACTGCAACTTCAG
1 CTGCTCCACTACAACTTCAAGGAGATAAGATCTACTATCTTCAATCCACTCCACTGCAACTCCAA
* * * *
10155488 GGAGATGAAACTTGTAACTTCAACCTGCTCTCTGCAACTTCAGAGAGATAATG-TTTGCTATCCT
66 GGAGATGAAACTTGTAACTTCAACCTACTCTCTGCAACTTCAGAAAGATAA-GATTTACTATCTT
*
10155552 CGAT
130 TGAT
** * * * *
10155556 CTATTCCGCTATAACTTCAGGGAAATAAGATCT
1 CTGCTCCACTACAACTTCAAGGAGATAAGATCT
10155589 GGTGGCTTAA
Statistics
Matches: 139, Mismatches: 23, Indels: 9
0.81 0.13 0.05
Matches are distributed among these distances:
133 60 0.43
134 75 0.54
135 4 0.03
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (133 bp):
CTGCTCCACTACAACTTCAAGGAGATAAGATCTACTATCTTCAATCCACTCCACTGCAACTCCAA
GGAGATGAAACTTGTAACTTCAACCTACTCTCTGCAACTTCAGAAAGATAAGATTTACTATCTTT
GAT
Found at i:10155449 original size:45 final size:45
Alignment explanation
Indices: 10155115--10155762 Score: 134
Period size: 45 Copynumber: 14.6 Consensus size: 45
10155105 CTTAATCCGT
* * * *
10155115 TCCACTACAACTTC-AGGTAGATAGGAT-TAGCTGTCTTCAGTCTAC
1 TCCACTACAACTTCAAGG-AGATAAGATCTA-CTATCTTCAATCTGC
** * ** ** *
10155160 TCTGCTACAACTTCAGGGAGATAAGA-CTTGTGGCTTCAATCTGT
1 TCCACTACAACTTCAAGGAGATAAGATCTACTATCTTCAATCTGC
* ** * * ** * * *
10155204 TCCAATGTAATTTCAGGGAGA-AGAGAT-TTGTAGCTTCGATCTAC
1 TCCACTACAACTTCAAGGAGATA-AGATCTACTATCTTCAATCTGC
* * * *
10155248 TCCGCTAGAACTTCAAGGAGGTAAGAAT-TGA-TAAT-TTCAACCTGC
1 TCCACTACAACTTCAAGGAGATAAG-ATCT-ACT-ATCTTCAATCTGC
* * * ** * * **
10155293 TCCACTACGACTTCAGGGAGATAAGGT-TTGTGGTCTTCAGTCCAC
1 TCCACTACAACTTCAAGGAGATAAGATCTACT-ATCTTCAATCTGC
* * * * *
10155338 TCCACTGCAACTCCAAGGAGATAAGA-CTTGCTA-CTTCAACCTAC
1 TCCACTACAACTTCAAGGAGATAAGATC-TACTATCTTCAATCTGC
* * * * * **
10155382 TCTATTGCAACTTC-AGAAAGATAAGATTTACTATCTTTGATCTGC
1 TCCACTACAACTTCAAG-GAGATAAGATCTACTATCTTCAATCTGC
* *
10155427 TCCGCTATAACTTCAAGGAGATAAGATCTACTATCTTCAATCTGC
1 TCCACTACAACTTCAAGGAGATAAGATCTACTATCTTCAATCTGC
* * ** * *
10155472 TCCACTGCAACTTCAGGGAGATGAA-A-CTTGTAACTTCAACCTGC
1 TCCACTACAACTTCAAGGAGAT-AAGATCTACTATCTTCAATCTGC
* * * * * * **
10155516 T-CTCTGCAACTTC-AGAGAGATAATG-TTTGCTATCCTCGATCTAT
1 TCCACTACAACTTCAAG-GAGATAA-GATCTACTATCTTCAATCTGC
* * * * ** ** *
10155560 TCCGCTATAACTTCAGGGAAATAAGATCTGGTGGCTTAAATCTGC
1 TCCACTACAACTTCAAGGAGATAAGATCTACTATCTTCAATCTGC
* * * ** * * *
10155605 TTCATTGCCGCTACATGGAGATAAGAT-T-CGCAGTCTTCAATCTGC
1 TCCACTACAACTTCAAGGAGATAAGATCTAC-TA-TCTTCAATCTGC
** * * * *
10155650 TCCACTACTGCTT-AGGGAGATAAGAT-TCGCTATCTTCAGTCTAC
1 TCCACTACAACTTCAAGGAGATAAGATCT-ACTATCTTCAATCTGC
* * * * ** * * *
10155694 TCCACTGCAACTTTAGGGTGATAAGA-CTTGTATCTTGAACCTAC
1 TCCACTACAACTTCAAGGAGATAAGATCTACTATCTTCAATCTGC
* *
10155738 TCCACTGCAACTTCAGGGAGATAAG
1 TCCACTACAACTTCAAGGAGATAAG
10155763 GCTGGTGGCT
Statistics
Matches: 430, Mismatches: 143, Indels: 61
0.68 0.23 0.10
Matches are distributed among these distances:
42 3 0.01
43 19 0.04
44 186 0.43
45 211 0.49
46 11 0.03
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (45 bp):
TCCACTACAACTTCAAGGAGATAAGATCTACTATCTTCAATCTGC
Found at i:10155585 original size:133 final size:134
Alignment explanation
Indices: 10155337--10155588 Score: 341
Period size: 133 Copynumber: 1.9 Consensus size: 134
10155327 CTTCAGTCCA
*
10155337 CTCCACTGCAACTCCAAGGAGATAAGACTTGCTACTTCAACCTACTCTATTGCAACTTCAGAAAG
1 CTCCACTGCAACTCCAAGGAGATAAGACTTGCTACTTCAACCTACTCTACTGCAACTTCAGAAAG
* * * *
10155402 ATAAGATTTACTATCTTTGATCTGCTCCGCTATAACTTCAAGGAGATAAGATCTACTATCTTCAA
66 ATAAGATTTACTATCCTCGATCTACTCCGCTATAACTTCAAGGAAATAAGATCTACTATCTTCAA
10155467 TCTG
131 TCTG
* * * *
10155471 CTCCACTGCAACTTCAGGGAGATGAA-ACTTG-TAACTTCAACCTGCTCT-CTGCAACTTCAGAG
1 CTCCACTGCAACTCCAAGGAGAT-AAGACTTGCT-ACTTCAACCTACTCTACTGCAACTTCAGAA
* * *
10155533 AGATAATG-TTTGCTATCCTCGATCTATTCCGCTATAACTTCAGGGAAATAAGATCT
64 AGATAA-GATTTACTATCCTCGATCTACTCCGCTATAACTTCAAGGAAATAAGATCT
10155589 GGTGGCTTAA
Statistics
Matches: 103, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
133 60 0.58
134 41 0.40
135 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (134 bp):
CTCCACTGCAACTCCAAGGAGATAAGACTTGCTACTTCAACCTACTCTACTGCAACTTCAGAAAG
ATAAGATTTACTATCCTCGATCTACTCCGCTATAACTTCAAGGAAATAAGATCTACTATCTTCAA
TCTG
Found at i:10155625 original size:133 final size:134
Alignment explanation
Indices: 10155337--10155630 Score: 326
Period size: 133 Copynumber: 2.2 Consensus size: 134
10155327 CTTCAGTCCA
* * *
10155337 CTCCACTGCAACTCCAAGGAGATAAGACTTGCTACTTCAACCTACTCTATTGCAACTTCAGAAAG
1 CTCCACTGCAACTACAGGGAGATAAGACTTGCTACTTCAACCTACTCTACTGCAACTTCAGAAAG
* * * * * *
10155402 ATAAGATTTACTATCTTTGATCTGCTCCGCTATAACTTCAAGGAGATAAGATCTACTATCTTCAA
66 ATAAGATTTACTATCCTCGATCTACTCCGCTATAACTTCAAGGAAATAAGATCTACTAGCTTAAA
10155467 TCTG
131 TCTG
* * *
10155471 CTCCACTGCAACTTCAGGGAGATGAA-ACTTG-TAACTTCAACCTGCTCT-CTGCAACTTCAGAG
1 CTCCACTGCAACTACAGGGAGAT-AAGACTTGCT-ACTTCAACCTACTCTACTGCAACTTCAGAA
* * * ** *
10155533 AGATAATG-TTTGCTATCCTCGATCTATTCCGCTATAACTTCAGGGAAATAAGATCTGGTGGCTT
64 AGATAA-GATTTACTATCCTCGATCTACTCCGCTATAACTTCAAGGAAATAAGATCTACTAGCTT
10155597 AAATCTG
128 AAATCTG
* * ** *
10155604 CTTCATTGCCGCTACATGGAGATAAGA
1 CTCCACTGCAACTACAGGGAGATAAGA
10155631 TTCGCAGTCT
Statistics
Matches: 133, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
132 2 0.02
133 88 0.66
134 41 0.31
135 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (134 bp):
CTCCACTGCAACTACAGGGAGATAAGACTTGCTACTTCAACCTACTCTACTGCAACTTCAGAAAG
ATAAGATTTACTATCCTCGATCTACTCCGCTATAACTTCAAGGAAATAAGATCTACTAGCTTAAA
TCTG
Found at i:10155728 original size:44 final size:45
Alignment explanation
Indices: 10155621--10155762 Score: 148
Period size: 44 Copynumber: 3.2 Consensus size: 45
10155611 GCCGCTACAT
* * * **
10155621 GGAGATAAGATTCGC-AGTCTTCAATCTGCTCCACTACTGC-TTAG
1 GGAGATAAGATTCGCTA-TCTTCAACCTACTCCACTGCAACTTTAG
**
10155665 GGAGATAAGATTCGCTATCTTCAGTCTACTCCACTGCAACTTTAG
1 GGAGATAAGATTCGCTATCTTCAACCTACTCCACTGCAACTTTAG
* * *
10155710 GGTGATAAGACTT-G-TATCTTGAACCTACTCCACTGCAACTTCAG
1 GGAGATAAGA-TTCGCTATCTTCAACCTACTCCACTGCAACTTTAG
10155754 GGAGATAAG
1 GGAGATAAG
10155763 GCTGGTGGCT
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
44 67 0.80
45 15 0.18
46 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
GGAGATAAGATTCGCTATCTTCAACCTACTCCACTGCAACTTTAG
Found at i:10155783 original size:44 final size:44
Alignment explanation
Indices: 10155690--10155776 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
10155680 TATCTTCAGT
* * * * *
10155690 CTACTCCACTGCAACTTTAGGGTGATAAGACTTGTATCTTGAAC
1 CTACTCCACTGCAACTTCAGGGAGATAAGACTGGTAGCTTAAAC
* *
10155734 CTACTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTAAA
1 CTACTCCACTGCAACTTCAGGGAGATAAGACTGGTAGCTTAAA
10155777 TTTACTCTAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (44 bp):
CTACTCCACTGCAACTTCAGGGAGATAAGACTGGTAGCTTAAAC
Found at i:10155802 original size:177 final size:178
Alignment explanation
Indices: 10155568--10155895 Score: 463
Period size: 177 Copynumber: 1.8 Consensus size: 178
10155558 ATTCCGCTAT
* *
10155568 AACTTCAGGGAAATAAGATCTGGTGGCTTAAATCTGCTTCATTGCCGCTACATGGAGATAAGATT
1 AACTTCAGGGAAATAAGAGCTGGTGGCTTAAATCTACTTCATTGCCGCTACATGGAGATAAGATT
10155633 CG-CAGTCT-TCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT-TCGCT-ATCTTCAGTCTAC
66 CGCCA-T-TATCAATCTGCTCCACTACTGCTTAGGGAGATAAGATAT-G-TAATCTTCAGTCTAC
*
10155694 TCCACTGCAACTTT-AGGGTGATAAGACTTGTATCTTGAACCTACTCCACTGC
127 TCCACTGCAA-TTTCAGGGAGATAAGACTTGTATCTTGAACCTACTCCACTGC
* *
10155746 AACTTCAGGGAGATAAG-GCTGGTGGCTTAAATTTAC-TCTATTGCCGCTACATGGAGATAAGAT
1 AACTTCAGGGAAATAAGAGCTGGTGGCTTAAATCTACTTC-ATTGCCGCTACATGGAGATAAGAT
* * * * *
10155809 TCGCCATTATCGATTTGCTCCACTACTGCTTAGGGAGCTAAGATATGTAATTTTCAGTCTGCTCC
65 TCGCCATTATCAATCTGCTCCACTACTGCTTAGGGAGATAAGATATGTAATCTTCAGTCTACTCC
10155874 ACTGCAATTTCAGGGAGATAAG
130 ACTGCAATTTCAGGGAGATAAG
10155896 GCTGGTGGCT
Statistics
Matches: 134, Mismatches: 10, Indels: 13
0.85 0.06 0.08
Matches are distributed among these distances:
176 7 0.05
177 108 0.81
178 19 0.14
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (178 bp):
AACTTCAGGGAAATAAGAGCTGGTGGCTTAAATCTACTTCATTGCCGCTACATGGAGATAAGATT
CGCCATTATCAATCTGCTCCACTACTGCTTAGGGAGATAAGATATGTAATCTTCAGTCTACTCCA
CTGCAATTTCAGGGAGATAAGACTTGTATCTTGAACCTACTCCACTGC
Found at i:10155877 original size:133 final size:132
Alignment explanation
Indices: 10155737--10156160 Score: 616
Period size: 133 Copynumber: 3.2 Consensus size: 132
10155727 CTTGAACCTA
* *
10155737 CTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTAAATTTACTCTATTGCCGCTACATGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCTATTGCCGCTACATGGAG
* * * * * *
10155802 ATAAGATTCGCCATTATCGATTTGCTCCACTACTGCTTAGGGAGCTAAGATATGTAATTTTCAGT
66 ATAAGATTTGCC-TTATCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTTAGT
10155867 CTG
130 CTG
*
10155870 CTCCACTGCAATTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCTATTGCCGCTACATGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCTATTGCCGCTACATGGAG
*
10155935 ATAAGATTTGCCGTCT-TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTTAG
66 ATAAGATTTGCC-T-TATCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTTAG
10155999 TCTG
129 TCTG
* * ** *
10156003 CTCTACTACAACTTCAGGGAGATAAGTTTGGTGGCTTAAATCTGCTTTATTGCCGCTACATGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCTATTGCCGCTACATGGAG
* * * *
10156068 ATAAGATTTGCCGTATTCGATCTGCTCCACTACTGTTTAAGGAGATAAGGTCTGCAATTTTTAGT
66 ATAAGATTTGCCTTA-TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTTAGT
10156133 CTG
130 CTG
* *
10156136 CTCCACTGTAACTTCAGGGAAATAA
1 CTCCACTGCAACTTCAGGGAGATAA
10156161 AACTTATATC
Statistics
Matches: 262, Mismatches: 26, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
131 1 0.00
133 260 0.99
134 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (132 bp):
CTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCTATTGCCGCTACATGGAG
ATAAGATTTGCCTTATCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTTAGTC
TG
Found at i:10155941 original size:266 final size:266
Alignment explanation
Indices: 10155665--10156160 Score: 620
Period size: 266 Copynumber: 1.9 Consensus size: 266
10155655 TACTGCTTAG
* * * ***
10155665 GGAGATAAGATTCGCTATCTTC-AGTCTACTCCACTGCAACTTTAGGGTGATAAGA-CTTGTATC
1 GGAGATAAGATTCGCCATCTTCGA-TCTACTCCACTACAAC-TTAGGGAGATAAGATCTACAATC
* *
10155728 TTGAACCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTAAATTTACTCTATTGCCGC
64 TTGAACCTACTCCACTACAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTACTCTATTGCCGC
* * * * *
10155793 TACATGGAGATAAGATTCGCCAT-TATCGATTTGCTCCACTACTGCTTAGGGAGCTAAGATATGT
129 TACATGGAGATAAGATTCGCCGTAT-TCGATCTGCTCCACTACTGCTTAAGGAGATAAGATATGC
* *
10155857 AATTTTCAGTCTGCTCCACTGCAATTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCTATTG
193 AATTTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGGCTGGTGGCTTAAATCTGCTCTATTG
10155922 CCGCTACAT
258 CCGCTACAT
* * * ** *
10155931 GGAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTT
1 GGAGATAAGATTCGCCATCTTCGATCTACTCCACTACAACTTAGGGAGATAAGATCTACAATCTT
* ** * * ** * *
10155996 TAGTCTGCTCTACTACAACTTCAGGGAGATAAGTTTGGTGGCTTAAATCTGCTTTATTGCCGCTA
66 GAACCTACTCCACTACAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTACTCTATTGCCGCTA
* * * *
10156061 CATGGAGATAAGATTTGCCGTATTCGATCTGCTCCACTACTGTTTAAGGAGATAAGGTCTGCAAT
131 CATGGAGATAAGATTCGCCGTATTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATATGCAAT
* *
10156126 TTTTAGTCTGCTCCACTGTAACTTCAGGGAAATAA
196 TTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAA
10156161 AACTTATATC
Statistics
Matches: 191, Mismatches: 36, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
265 13 0.07
266 176 0.92
267 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (266 bp):
GGAGATAAGATTCGCCATCTTCGATCTACTCCACTACAACTTAGGGAGATAAGATCTACAATCTT
GAACCTACTCCACTACAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTACTCTATTGCCGCTA
CATGGAGATAAGATTCGCCGTATTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATATGCAAT
TTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGGCTGGTGGCTTAAATCTGCTCTATTGCCG
CTACAT
Found at i:10155979 original size:44 final size:44
Alignment explanation
Indices: 10155931--10156116 Score: 115
Period size: 44 Copynumber: 4.2 Consensus size: 44
10155921 GCCGCTACAT
10155931 GGAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
1 GGAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
* * ** ** * **
10155975 GGAGATAAGATCTACAAT-TTTTAGTCTGCTCTACTACAACTTCAG
1 GGAGATAAGATTTGCCGTCTTCGA-TCTGCTCCACTACTGCTT-AG
** * ** ** * * * * *
10156020 GGAGATAAG-TTTGGTGGCTTAAATCTGCTTTATTGCCGCTACAT
1 GGAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCT-TAG
* * *
10156064 GGAGATAAGATTTGCCGTATTCGATCTGCTCCACTACTGTTTAA
1 GGAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
10156108 GGAGATAAG
1 GGAGATAAG
10156117 GTCTGCAATT
Statistics
Matches: 99, Mismatches: 38, Indels: 10
0.67 0.26 0.07
Matches are distributed among these distances:
43 3 0.03
44 63 0.64
45 33 0.33
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (44 bp):
GGAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
Found at i:10156247 original size:266 final size:266
Alignment explanation
Indices: 10155745--10156251 Score: 561
Period size: 266 Copynumber: 1.9 Consensus size: 266
10155735 TACTCCACTG
*
10155745 CAACTTCAGGGAGATAAGGCTGGTGGCTTAAATTTACTCTATTGCCGCTACATGGAGATAAGATT
1 CAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTACTCTATTGCCGCTACATGGAGATAAGATT
* * * *
10155810 CGCCATTATCGATTTGCTCCACTACTGCTTAGGGAGCTAAGATATGTAATTTTCAGTCTGCTCCA
66 CGCCATTATCGATCTGCTCCACTACTGCTTAAGGAGATAAGATATGCAATTTTCAGTCTGCTCCA
* * ** * * * * ** *
10155875 CTGCAATTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCTATTGCCGCTACATGGAGATAAG
131 CTGCAACTTCAGGGAAATAAAACTGATAGCTTAAATCTGCTCCACTGCAACTACATGAAGATAAG
** * ** * *
10155940 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTTAGTCTGCT
196 AGCTGCCGGCTTAAATCTGCTCCACTACCGCTCAGGGAGATAAGATCTACAATTTTTAGTCTGCT
10156005 CTACTA
261 CTACTA
** * *
10156011 CAACTTCAGGGAGATAAGTTTGGTGGCTTAAATCTGCTTTATTGCCGCTACATGGAGATAAGATT
1 CAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTACTCTATTGCCGCTACATGGAGATAAGATT
* * * * * *
10156076 TGCC-GTATTCGATCTGCTCCACTACTGTTTAAGGAGATAAGGTCTGCAATTTTTAGTCTGCTCC
66 CGCCATTA-TCGATCTGCTCCACTACTGCTTAAGGAGATAAGATATGCAATTTTCAGTCTGCTCC
* * * * * * *
10156140 ACTGTAACTTCAGGGAAATAAAACTTATATCTTGAA-CTTGTTCCACTGTAACTTCATGAAGATA
130 ACTGCAACTTCAGGGAAATAAAACTGATAGCTTAAATC-TGCTCCACTGCAACTACATGAAGATA
** * * *
10156204 AG-GCTGGTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGAT
194 AGAGCTGCCGGCTTAAATCTGCTCCACTACCGCT-CAGGGAGATAAGAT
10156252 TTGTCGTCTT
Statistics
Matches: 193, Mismatches: 45, Indels: 6
0.79 0.18 0.02
Matches are distributed among these distances:
265 24 0.12
266 169 0.88
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (266 bp):
CAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTACTCTATTGCCGCTACATGGAGATAAGATT
CGCCATTATCGATCTGCTCCACTACTGCTTAAGGAGATAAGATATGCAATTTTCAGTCTGCTCCA
CTGCAACTTCAGGGAAATAAAACTGATAGCTTAAATCTGCTCCACTGCAACTACATGAAGATAAG
AGCTGCCGGCTTAAATCTGCTCCACTACCGCTCAGGGAGATAAGATCTACAATTTTTAGTCTGCT
CTACTA
Found at i:10162706 original size:125 final size:127
Alignment explanation
Indices: 10162508--10162764 Score: 326
Period size: 125 Copynumber: 2.0 Consensus size: 127
10162498 GCTTGCCTTC
* * *
10162508 TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGTATATTCGGATATTTAGATCAAACAGA
1 TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGATACTTAGATCAAACAGA
* * * * *
10162573 AAATCGAAACCCAGTACGTTAGGGCACGACTACTCGAATTTCTAATTA-CAGAATATTGCATT
66 AAACCGAAACCCAATACGTTAGGACACGACTACTCGAATTTCCAAGTACCA-AATATTGCATT
* *
10162635 TATTTTATTTAAAACTCATGTATTTTAA-TTT-AAAAGGATAATCGG-TCACTTAGATCAAAC-G
1 TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGAT-ACTTAGATCAAACAG
* * * *
10162696 AAAAACCGAAACCCAATACGTTAGGACACGATTTCTCTAATTTCCAAGTACCAAATATTGCCTT
65 -AAAACCGAAACCCAATACGTTAGGACACGACTACTCGAATTTCCAAGTACCAAATATTGCATT
10162760 TATTT
1 TATTT
10162765 GAAAAATCCA
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
124 2 0.02
125 80 0.71
126 5 0.04
127 26 0.23
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (127 bp):
TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGATACTTAGATCAAACAGA
AAACCGAAACCCAATACGTTAGGACACGACTACTCGAATTTCCAAGTACCAAATATTGCATT
Found at i:10162980 original size:20 final size:18
Alignment explanation
Indices: 10162920--10162977 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 18
10162910 AATAGGACGG
* *
10162920 ATAATATAAATAATAGTA
1 ATAATATAAAAAAAAGTA
*
10162938 ATAATCATAAAAAAATGGTA
1 ATAAT-ATAAAAAAA-AGTA
10162958 ATAATATTAAAAAAAAGTA
1 ATAATA-TAAAAAAAAGTA
10162977 A
1 A
10162978 ATATAATGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 5 0.15
19 12 0.36
20 16 0.48
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.28
Consensus pattern (18 bp):
ATAATATAAAAAAAAGTA
Found at i:10163059 original size:3 final size:3
Alignment explanation
Indices: 10163044--10163340 Score: 79
Period size: 3 Copynumber: 99.7 Consensus size: 3
10163034 GATAATTGAA
*
10163044 AAT AAT GAT AAT AAT AAT GGAAGT AAT GAA- AAT AAT AAT AAT AGA-
1 AAT AAT AAT AAT AAT AAT --AA-T AAT -AAT AAT AAT AAT AAT A-AT
* * * *
10163089 AAC AAT AGT AAT AA- AAGT AAT AAT AA- AAT AAA AAT AGA- AAT GAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * **
10163133 -AC AAT AAT AAT AAT -AT ACGT GCT AAT AAT AAT AAT AAT -AT AA-
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
10163175 AAA AAG AA- AAT AAT ACT -AT ATT AAT AAA AAT AAT AAT AGT AGGTT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A--AT
* * * *
10163220 AAT AAT AAT AGT AAT AAA AAGGT AAT AAT AA- AAA AAT AAT AA- AAC
1 AAT AAT AAT AAT AAT AAT AA--T AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
10163265 ACT ATT ACGTT ACT ACT AAT AAT AAT AA- AA- AAG AA- AAC AAT AAT
1 AAT AAT A--AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
10163309 AGT -AT ATAG AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AA
10163341 CACTCTCCCT
Statistics
Matches: 223, Mismatches: 40, Indels: 62
0.69 0.12 0.19
Matches are distributed among these distances:
2 29 0.13
3 173 0.78
4 11 0.05
5 9 0.04
6 1 0.00
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:10163209 original size:23 final size:22
Alignment explanation
Indices: 10163156--10163261 Score: 63
Period size: 23 Copynumber: 4.6 Consensus size: 22
10163146 TATACGTGCT
*
10163156 AATAATAATAATAATATAAAAAA
1 AATAATAATAATAAT-TAATAAA
* *
10163179 AGAAAATAATACTATATTAATAAA
1 A-ATAATAATAATA-ATTAATAAA
* * *
10163203 AATAATAATAGTAGGTTAATAAT
1 AATAATAATAATA-ATTAATAAA
* * *
10163226 AATAGTAATAAAAAGGTAATAATA
1 AATAATAATAATAA-TTAATAA-A
10163250 AA-AA-AATAATAA
1 AATAATAATAATAA
10163262 AACACTATTA
Statistics
Matches: 63, Mismatches: 16, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
22 7 0.11
23 35 0.56
24 19 0.30
25 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.07, T:0.27
Consensus pattern (22 bp):
AATAATAATAATAATTAATAAA
Found at i:10163805 original size:10 final size:10
Alignment explanation
Indices: 10163790--10163823 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
10163780 TTTAGTGATT
10163790 GGTTTAGTGG
1 GGTTTAGTGG
10163800 GGTTTAGTGG
1 GGTTTAGTGG
10163810 TTGGTTTAGTGG
1 --GGTTTAGTGG
10163822 GG
1 GG
10163824 CGTTACTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 12 0.55
12 10 0.45
ACGTcount: A:0.09, C:0.00, G:0.50, T:0.41
Consensus pattern (10 bp):
GGTTTAGTGG
Found at i:10163806 original size:22 final size:22
Alignment explanation
Indices: 10163778--10163823 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
10163768 TTAGTGGGGT
10163778 GGTTTAGTGATTGGTTTAGTGG
1 GGTTTAGTGATTGGTTTAGTGG
*
10163800 GGTTTAGTGGTTGGTTTAGTGG
1 GGTTTAGTGATTGGTTTAGTGG
10163822 GG
1 GG
10163824 CGTTACTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.11, C:0.00, G:0.46, T:0.43
Consensus pattern (22 bp):
GGTTTAGTGATTGGTTTAGTGG
Done.