Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 291 of 343
Found at i:96080499 original size:19 final size:20
Alignment explanation
Indices: 96080472--96080509 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
96080462 ATACATATAT
* *
96080472 ATATTAAAACAAGT-ATAAC
1 ATATAAAAAAAAGTGATAAC
96080491 ATATAAAAAAAAGTGATAA
1 ATATAAAAAAAAGTGATAA
96080510 TATTCATTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.63, C:0.05, G:0.08, T:0.24
Consensus pattern (20 bp):
ATATAAAAAAAAGTGATAAC
Found at i:96086750 original size:29 final size:29
Alignment explanation
Indices: 96086708--96086767 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
96086698 CTATTTAAAG
96086708 TTCAACTCTAAAATTCAACAAAAACATCC
1 TTCAACTCTAAAATTCAACAAAAACATCC
96086737 TTCAACTCTAAAATTCAACAAAAACATCC
1 TTCAACTCTAAAATTCAACAAAAACATCC
96086766 TT
1 TT
96086768 TCAAATTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.27
Consensus pattern (29 bp):
TTCAACTCTAAAATTCAACAAAAACATCC
Found at i:96110526 original size:12 final size:12
Alignment explanation
Indices: 96110497--96110550 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
96110487 AGGTTGAGGG
96110497 AGAAGAAAATA-A
1 AGAA-AAAATAGA
96110509 AG-AAAAATATG-
1 AGAAAAAATA-GA
96110520 AGAAAAAATAGA
1 AGAAAAAATAGA
* *
96110532 AGAAAAAAGACA
1 AGAAAAAATAGA
96110544 AGAAAAA
1 AGAAAAA
96110551 GGAGAAAAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
10 6 0.17
11 4 0.11
12 26 0.72
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.07
Consensus pattern (12 bp):
AGAAAAAATAGA
Found at i:96110798 original size:30 final size:31
Alignment explanation
Indices: 96110732--96110807 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
96110722 ATGTTAATGG
96110732 GTGACTGATTTGTCACTTTTCGATAACGTTA
1 GTGACTGATTTGTCACTTTTCGATAACGTTA
* *
96110763 GTGACTGATTTGTTATTTTTCGA-AA-GTTGA
1 GTGACTGATTTGTCACTTTTCGATAACGTT-A
*
96110793 GTGACTAATTTGTCA
1 GTGACTGATTTGTCA
96110808 GCTGCATCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 3 0.08
30 16 0.40
31 21 0.52
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (31 bp):
GTGACTGATTTGTCACTTTTCGATAACGTTA
Found at i:96114886 original size:40 final size:39
Alignment explanation
Indices: 96114817--96114933 Score: 126
Period size: 40 Copynumber: 2.9 Consensus size: 39
96114807 TGAAAAAGTG
** *
96114817 CCGCTAAAGATCGAGCATTAGCGATGCTTTTTGAAAAACA
1 CCGCTAAAGATC-AGCATTAGCGGCGCTTTTTAAAAAACA
* *
96114857 CCGCTAAAGATCAAGCATTAGCGGCGCTTTCTAAAAAACG
1 CCGCTAAAGATC-AGCATTAGCGGCGCTTTTTAAAAAACA
* * * * *
96114897 CCACTATAGGTCACCTTTAGCGGCGCTTTTTAAAAAA
1 CCGCTAAAGATCAGCATTAGCGGCGCTTTTTAAAAAA
96114934 AACACCGCAA
Statistics
Matches: 65, Mismatches: 12, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 22 0.34
40 43 0.66
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (39 bp):
CCGCTAAAGATCAGCATTAGCGGCGCTTTTTAAAAAACA
Found at i:96115526 original size:15 final size:14
Alignment explanation
Indices: 96115508--96115559 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
96115498 TAGGAATTAT
96115508 GGTTTATGGTTTAA
1 GGTTTATGGTTTAA
* **
96115522 GGGTTGGGGTTTAA
1 GGTTTATGGTTTAA
*
96115536 GCTTTATGGGTTTAA
1 GGTTTAT-GGTTTAA
96115551 GGTTTATGG
1 GGTTTATGG
96115560 GTCGGGGGTC
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
14 16 0.55
15 13 0.45
ACGTcount: A:0.17, C:0.02, G:0.37, T:0.44
Consensus pattern (14 bp):
GGTTTATGGTTTAA
Found at i:96115541 original size:21 final size:21
Alignment explanation
Indices: 96115508--96115547 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
96115498 TAGGAATTAT
* *
96115508 GGTTTATGGTTTAAGGGTTGG
1 GGTTTAAGCTTTAAGGGTTGG
*
96115529 GGTTTAAGCTTTATGGGTT
1 GGTTTAAGCTTTAAGGGTT
96115548 TAAGGTTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.03, G:0.38, T:0.45
Consensus pattern (21 bp):
GGTTTAAGCTTTAAGGGTTGG
Found at i:96115560 original size:15 final size:15
Alignment explanation
Indices: 96115508--96115561 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
96115498 TAGGAATTAT
96115508 GGTTTAT-GGTTTAA
1 GGTTTATGGGTTTAA
* *
96115522 GGGTT-GGGGTTTAA
1 GGTTTATGGGTTTAA
*
96115536 GCTTTATGGGTTTAA
1 GGTTTATGGGTTTAA
96115551 GGTTTATGGGT
1 GGTTTATGGGT
96115562 CGGGGGTCAA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
14 14 0.44
15 18 0.56
ACGTcount: A:0.17, C:0.02, G:0.37, T:0.44
Consensus pattern (15 bp):
GGTTTATGGGTTTAA
Found at i:96115588 original size:15 final size:15
Alignment explanation
Indices: 96115563--96115603 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
96115553 TTTATGGGTC
*
96115563 GGGGGTCAAGGGTTA
1 GGGGTTCAAGGGTTA
*
96115578 GGGGTTTAAGGGTTA
1 GGGGTTCAAGGGTTA
96115593 GGGGTTCAAGG
1 GGGGTTCAAGG
96115604 TTAATAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.20, C:0.05, G:0.51, T:0.24
Consensus pattern (15 bp):
GGGGTTCAAGGGTTA
Found at i:96115968 original size:25 final size:23
Alignment explanation
Indices: 96115919--96115972 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
96115909 ATATCATTTT
*
96115919 ATATTTATATATTGCATACATAA
1 ATATTTATATATTGCATACAAAA
* *
96115942 ATATTTATATATATTCAATATAAAA
1 ATATTTATATAT-TGC-ATACAAAA
96115967 ATATTT
1 ATATTT
96115973 TGATGTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 12 0.46
24 2 0.08
25 12 0.46
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (23 bp):
ATATTTATATATTGCATACAAAA
Found at i:96116269 original size:9 final size:8
Alignment explanation
Indices: 96116251--96116329 Score: 57
Period size: 7 Copynumber: 10.4 Consensus size: 8
96116241 TTTATATGAT
96116251 AATTTAAA
1 AATTTAAA
96116259 AATTATAAA
1 AATT-TAAA
96116268 AATCTTCAAAA
1 AAT-TT--AAA
*
96116279 AAATT-AA
1 AATTTAAA
96116286 AA-TT-AA
1 AATTTAAA
96116292 AA-TTAAA
1 AATTTAAA
96116299 AA-TTAAA
1 AATTTAAA
96116306 AA-TTAAA
1 AATTTAAA
96116313 AA-TTAAA
1 AATTTAAA
96116320 AA-TTAAA
1 AATTTAAA
96116327 AAT
1 AAT
96116330 AAAAAATAAA
Statistics
Matches: 64, Mismatches: 1, Indels: 12
0.83 0.01 0.16
Matches are distributed among these distances:
6 8 0.12
7 36 0.56
8 4 0.06
9 8 0.12
10 3 0.05
11 5 0.08
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (8 bp):
AATTTAAA
Found at i:96116342 original size:7 final size:7
Alignment explanation
Indices: 96116277--96116341 Score: 100
Period size: 7 Copynumber: 9.7 Consensus size: 7
96116267 AAATCTTCAA
96116277 AAAAATT
1 AAAAATT
96116284 -AAAATT
1 AAAAATT
96116290 -AAAATT
1 AAAAATT
96116296 AAAAATT
1 AAAAATT
96116303 AAAAATT
1 AAAAATT
96116310 AAAAATT
1 AAAAATT
96116317 AAAAATT
1 AAAAATT
96116324 AAAAA-T
1 AAAAATT
*
96116330 AAAAAAT
1 AAAAATT
96116337 AAAAA
1 AAAAA
96116342 AAATAAAGAA
Statistics
Matches: 56, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
6 18 0.32
7 38 0.68
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (7 bp):
AAAAATT
Found at i:96116505 original size:19 final size:20
Alignment explanation
Indices: 96116463--96116505 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
96116453 TTTTGAAAAA
96116463 AAAATAGAAAAAAATATGTT
1 AAAATAGAAAAAAATATGTT
96116483 -AAATATGAAAAAAA-AT-TT
1 AAAATA-GAAAAAAATATGTT
96116501 AAAAT
1 AAAAT
96116506 TAAGCAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 2 0.10
19 11 0.52
20 8 0.38
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (20 bp):
AAAATAGAAAAAAATATGTT
Found at i:96116549 original size:42 final size:41
Alignment explanation
Indices: 96116501--96116591 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 41
96116491 AAAAAAATTT
* * *
96116501 AAAATTAAGCAATAGTGGTGTTTTTGAGAAAAAACGCCACAA
1 AAAATTAAGCAATAATGGCGTTTTTAAG-AAAAACGCCACAA
* * *
96116543 AAAATTAAGCTATAATGGCGTTTTTAAGATAAATGCCACAA
1 AAAATTAAGCAATAATGGCGTTTTTAAGAAAAACGCCACAA
96116584 AAAATTAA
1 AAAATTAA
96116592 CCTACAGTGA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 19 0.44
42 24 0.56
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.26
Consensus pattern (41 bp):
AAAATTAAGCAATAATGGCGTTTTTAAGAAAAACGCCACAA
Found at i:96117489 original size:3 final size:3
Alignment explanation
Indices: 96117481--96117515 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
96117471 TACGGAGAGC
96117481 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
96117516 TTAAGGTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:96119245 original size:31 final size:31
Alignment explanation
Indices: 96119210--96119274 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
96119200 AAATAAAGAT
96119210 AAAATAATTTTCTTACTGATTCTTCAAAAAG
1 AAAATAATTTTCTTACTGATTCTTCAAAAAG
*
96119241 AAAATAATTTTGTTACTGATTCTTCAAAAAG
1 AAAATAATTTTCTTACTGATTCTTCAAAAAG
96119272 AAA
1 AAA
96119275 TATATATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.37
Consensus pattern (31 bp):
AAAATAATTTTCTTACTGATTCTTCAAAAAG
Found at i:96120864 original size:18 final size:19
Alignment explanation
Indices: 96120814--96120865 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
96120804 TTTTTTATAT
*
96120814 TTTTCATGACTTTTATAATA
1 TTTT-ATGACTTTTATAAAA
** *
96120834 TTTTAT-TTTTTTTTAAAA
1 TTTTATGACTTTTATAAAA
96120852 TTTTATGACTTTTA
1 TTTTATGACTTTTA
96120866 GCGGTGTTTT
Statistics
Matches: 24, Mismatches: 7, Indels: 3
0.71 0.21 0.09
Matches are distributed among these distances:
18 14 0.58
19 6 0.25
20 4 0.17
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (19 bp):
TTTTATGACTTTTATAAAA
Found at i:96122225 original size:126 final size:126
Alignment explanation
Indices: 96121932--96122579 Score: 877
Period size: 126 Copynumber: 5.1 Consensus size: 126
96121922 TTTTTTATTT
* * * * *
96121932 TTTTTCTACAGTAGTATCTGAAAAAATGACTTTGAGAAGACATTTCTAAACAAATAGTGTCTAAA
1 TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCGAAA
* * * * * *
96121997 ACACTTTAAACAGGATGCACTGTCAGTAAAATTACTGATAAAAAAAGCTCTCACGTGGATGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTG---AAAAAAGCTCCCACGTGGACGCTC
*
96122061 TTTTTCTACAGTGGTATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCGAAA
1 TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCGAAA
* * * * * ** *
96122126 ACGCTTCAAGCAGGATACATTGTAAACAAAATTACTGAAAAAAGCTCCTACGTGGACATTT
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* *
96122187 TTTTTCTAGAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTTC-AA
1 TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTG-TCGAA
* * * * * *
96122251 AACGCTTCAAGAAGGATGAATTGTCAACAAAATTACTGAAAAAAGCTCCAATGTGGACGCTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* * * *
96122313 TTTTTCTACAATAATATCTAAAAAAATAATTTTGAGAAGACGCTTCTGAACAAATAGTGT-GCAA
1 TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCG-AA
*
96122377 AACACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* **
96122439 TTTTTCTACAGTAGTATTTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTTTAAA
1 TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCGAAA
* * * *
96122504 ACGCTTCAAGCAGGATGCACTATTAGCAAAATTACTGAAAAATGTTCCCACGTGGACGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
96122565 TTTTTCTACAGTAGT
1 TTTTTCTACAGTAGT
96122580 TCCTATTTTG
Statistics
Matches: 459, Mismatches: 56, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
125 1 0.00
126 368 0.80
127 2 0.00
129 88 0.19
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (126 bp):
TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCGAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
Found at i:96126174 original size:18 final size:18
Alignment explanation
Indices: 96126151--96126185 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
96126141 GGAAAATGAA
*
96126151 ACATATAAGGGTTAGGAC
1 ACATATAAGGGCTAGGAC
96126169 ACATATAAGGGCTAGGA
1 ACATATAAGGGCTAGGA
96126186 TACGCACCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.11, G:0.29, T:0.20
Consensus pattern (18 bp):
ACATATAAGGGCTAGGAC
Found at i:96126276 original size:30 final size:29
Alignment explanation
Indices: 96126242--96126308 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 29
96126232 GTTGAAGTGT
* *
96126242 TGGGCCCGGTTACTGTGTTGGCACTGTTGA
1 TGGGCCCGGTGACTGTGTGGGCACTGTT-A
* * *
96126272 TGGGCCCAGTGATTGTGTGGGCGCTGTTA
1 TGGGCCCGGTGACTGTGTGGGCACTGTTA
96126301 TGGGCCCG
1 TGGGCCCG
96126309 CGTCGTCATC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
29 8 0.26
30 23 0.74
ACGTcount: A:0.09, C:0.21, G:0.40, T:0.30
Consensus pattern (29 bp):
TGGGCCCGGTGACTGTGTGGGCACTGTTA
Found at i:96126817 original size:7 final size:7
Alignment explanation
Indices: 96126805--96126854 Score: 73
Period size: 7 Copynumber: 7.0 Consensus size: 7
96126795 TTATATAAAT
96126805 AATACTA
1 AATACTA
96126812 AATACTA
1 AATACTA
96126819 AATACTA
1 AATACTA
96126826 AATACTA
1 AATACTA
*
96126833 AATATTA
1 AATACTA
*
96126840 AATACGA
1 AATACTA
96126847 AATGACTA
1 AAT-ACTA
96126855 TTTTATTATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
7 35 0.92
8 3 0.08
ACGTcount: A:0.56, C:0.12, G:0.04, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:96128075 original size:25 final size:25
Alignment explanation
Indices: 96128041--96128090 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
96128031 ATTTCATTGA
96128041 GCTCAATTTTAAAACATCAAATATC
1 GCTCAATTTTAAAACATCAAATATC
96128066 GCTCAATTTTAAAACATCAAATATC
1 GCTCAATTTTAAAACATCAAATATC
96128091 CAATCATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.32
Consensus pattern (25 bp):
GCTCAATTTTAAAACATCAAATATC
Found at i:96128223 original size:27 final size:27
Alignment explanation
Indices: 96128193--96128259 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
96128183 TTGTCACATT
96128193 TCACTTTGCCATATTTGGCACACTTTA
1 TCACTTTGCCATATTTGGCACACTTTA
*
96128220 TCACTTTGCCATGTTTGGCACACTTTA
1 TCACTTTGCCATATTTGGCACACTTTA
*
96128247 TCACTTTGTCATA
1 TCACTTTGCCATA
96128260 GTTCAACTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.42
Consensus pattern (27 bp):
TCACTTTGCCATATTTGGCACACTTTA
Found at i:96130826 original size:26 final size:26
Alignment explanation
Indices: 96130793--96130875 Score: 88
Period size: 26 Copynumber: 3.4 Consensus size: 26
96130783 AAAAATTATA
96130793 AAAT-AAAAATTAATTAAAATTGCAT
1 AAATGAAAAATTAATTAAAATTGCAT
* *
96130818 AAATGAAAAA--AATATTAAATAG--T
1 AAATGAAAAATTAAT-TAAAATTGCAT
*
96130841 -ATTGAAAAATTAATTAAAATTGCAT
1 AAATGAAAAATTAATTAAAATTGCAT
96130866 AAATGAAAAA
1 AAATGAAAAA
96130876 AATATTAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
22 8 0.18
23 7 0.16
24 6 0.13
25 11 0.24
26 13 0.29
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (26 bp):
AAATGAAAAATTAATTAAAATTGCAT
Found at i:96130849 original size:22 final size:22
Alignment explanation
Indices: 96130821--96130897 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
96130811 ATTGCATAAA
96130821 TGAAAAAAATATTAAATAGTAT
1 TGAAAAAAATATTAAATAGTAT
* * *
96130843 TGAAAAATTAAT-TAAAATTGCATAAA
1 TGAAAAA--AATATTAAATAG--T-AT
*
96130869 TGAAAAAAATATTAATTAGTAT
1 TGAAAAAAATATTAAATAGTAT
96130891 TGAAAAA
1 TGAAAAA
96130898 TTAAAATTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 12
0.69 0.11 0.20
Matches are distributed among these distances:
22 15 0.36
23 7 0.17
24 6 0.14
25 6 0.14
26 8 0.19
ACGTcount: A:0.58, C:0.01, G:0.09, T:0.31
Consensus pattern (22 bp):
TGAAAAAAATATTAAATAGTAT
Found at i:96130852 original size:48 final size:48
Alignment explanation
Indices: 96130797--96130901 Score: 201
Period size: 48 Copynumber: 2.2 Consensus size: 48
96130787 ATTATAAAAT
96130797 AAAAATTAATTAAAATTGCATAAATGAAAAAAATATTAAATAGTATTG
1 AAAAATTAATTAAAATTGCATAAATGAAAAAAATATTAAATAGTATTG
*
96130845 AAAAATTAATTAAAATTGCATAAATGAAAAAAATATTAATTAGTATTG
1 AAAAATTAATTAAAATTGCATAAATGAAAAAAATATTAAATAGTATTG
96130893 AAAAATTAA
1 AAAAATTAA
96130902 AATTATCACT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (48 bp):
AAAAATTAATTAAAATTGCATAAATGAAAAAAATATTAAATAGTATTG
Found at i:96130882 original size:26 final size:26
Alignment explanation
Indices: 96130805--96130883 Score: 87
Period size: 26 Copynumber: 3.2 Consensus size: 26
96130795 ATAAAAATTA
96130805 ATTAAAATTGCATAAATGAAAAAAAT
1 ATTAAAATTGCATAAATGAAAAAAAT
* * *
96130831 ATT-AAATAG--T-ATTG-AAAAATT
1 ATTAAAATTGCATAAATGAAAAAAAT
96130852 AATTAAAATTGCATAAATGAAAAAAAT
1 -ATTAAAATTGCATAAATGAAAAAAAT
96130879 ATTAA
1 ATTAA
96130884 TTAGTATTGA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
21 6 0.15
22 6 0.15
23 6 0.15
25 6 0.15
26 11 0.27
27 6 0.15
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (26 bp):
ATTAAAATTGCATAAATGAAAAAAAT
Found at i:96143221 original size:13 final size:13
Alignment explanation
Indices: 96143203--96143227 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96143193 GTAAGTTTCC
96143203 AAAAATGGAAATG
1 AAAAATGGAAATG
96143216 AAAAATGGAAAT
1 AAAAATGGAAAT
96143228 TTGCAATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.20, T:0.16
Consensus pattern (13 bp):
AAAAATGGAAATG
Found at i:96146748 original size:12 final size:12
Alignment explanation
Indices: 96146731--96146761 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
96146721 TAATGAAAGT
96146731 ATAAAAGGAAAA
1 ATAAAAGGAAAA
96146743 ATAAAAGGAAAA
1 ATAAAAGGAAAA
*
96146755 AAAAAAG
1 ATAAAAG
96146762 ACATTCATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06
Consensus pattern (12 bp):
ATAAAAGGAAAA
Found at i:96146958 original size:13 final size:13
Alignment explanation
Indices: 96146940--96147061 Score: 89
Period size: 13 Copynumber: 10.6 Consensus size: 13
96146930 AAATATCTTT
96146940 ACTCCACTAAACC
1 ACTCCACTAAACC
96146953 ACT-C-C--AACC
1 ACTCCACTAAACC
96146962 ACT-C-C-AA-CC
1 ACTCCACTAAACC
*
96146971 ACTCTACTAAACC
1 ACTCCACTAAACC
*
96146984 ACTACACTAAACC
1 ACTCCACTAAACC
96146997 ACTCCACTAAACC
1 ACTCCACTAAACC
96147010 AC-CC-C--AACC
1 ACTCCACTAAACC
*
96147019 AC-CCTACTAAACT
1 ACTCC-ACTAAACC
96147032 ACTCCACTAAACC
1 ACTCCACTAAACC
96147045 AC-CC-C--AACC
1 ACTCCACTAAACC
96147054 ACTCCACT
1 ACTCCACT
96147062 TGCCTACAAA
Statistics
Matches: 90, Mismatches: 6, Indels: 27
0.73 0.05 0.22
Matches are distributed among these distances:
9 28 0.31
10 3 0.03
11 6 0.07
12 7 0.08
13 44 0.49
14 2 0.02
ACGTcount: A:0.37, C:0.48, G:0.00, T:0.15
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:96146963 original size:9 final size:9
Alignment explanation
Indices: 96146949--96146974 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
96146939 TACTCCACTA
96146949 AACCACTCC
1 AACCACTCC
96146958 AACCACTCC
1 AACCACTCC
96146967 AACCACTC
1 AACCACTC
96146975 TACTAAACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.54, G:0.00, T:0.12
Consensus pattern (9 bp):
AACCACTCC
Found at i:96147019 original size:35 final size:35
Alignment explanation
Indices: 96146980--96147061 Score: 130
Period size: 35 Copynumber: 2.3 Consensus size: 35
96146970 CACTCTACTA
*
96146980 AACCACTACACTAAACCACTCCACTAAACCACCCC
1 AACCACTCCACTAAACCACTCCACTAAACCACCCC
*
96147015 AACCAC-CCTACTAAACTACTCCACTAAACCACCCC
1 AACCACTCC-ACTAAACCACTCCACTAAACCACCCC
96147050 AACCACTCCACT
1 AACCACTCCACT
96147062 TGCCTACAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
34 1 0.02
35 40 0.93
36 2 0.05
ACGTcount: A:0.38, C:0.49, G:0.00, T:0.13
Consensus pattern (35 bp):
AACCACTCCACTAAACCACTCCACTAAACCACCCC
Found at i:96147040 original size:48 final size:44
Alignment explanation
Indices: 96146939--96147055 Score: 153
Period size: 48 Copynumber: 2.6 Consensus size: 44
96146929 CAAATATCTT
* *
96146939 TACTCCACTAAACCACTCCAACCACTCCAACCACTCTACTAAAC
1 TACTCCACTAAACCACTCCAACCACCCCAACCACCCTACTAAAC
* *
96146983 CACTACACTAAACCACTCCACTAAACCACCCCAACCACCCTACTAAAC
1 TACTCCACTAAACCACT-C-C--AACCACCCCAACCACCCTACTAAAC
*
96147031 TACTCCACTAAACCACCCCAACCAC
1 TACTCCACTAAACCACTCCAACCAC
96147056 TCCACTTGCC
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
44 21 0.34
45 1 0.02
46 2 0.03
47 1 0.02
48 37 0.60
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.15
Consensus pattern (44 bp):
TACTCCACTAAACCACTCCAACCACCCCAACCACCCTACTAAAC
Found at i:96147468 original size:3 final size:3
Alignment explanation
Indices: 96147457--96147539 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
96147447 TTTATTTTTT
* *
96147457 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
96147500 TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
96147540 ATATGCCATC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.11
3 49 0.75
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:96147514 original size:21 final size:18
Alignment explanation
Indices: 96147461--96147543 Score: 87
Period size: 18 Copynumber: 4.4 Consensus size: 18
96147451 TTTTTTTTAT
* *
96147461 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
96147480 TTTATATTATTATTATTA
1 TTTATATTATTATTATTA
*
96147498 TTTCTCATGTATATATTATTA
1 TTTAT-AT-TAT-TATTATTA
96147519 TTTATATTATTATTA-TA
1 TTTATATTATTATTATTA
96147536 TTATATAT
1 TT-TATAT
96147544 GCCATCTCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.46
19 9 0.16
20 5 0.09
21 12 0.21
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:96147761 original size:12 final size:12
Alignment explanation
Indices: 96147742--96147788 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
96147732 TTTGCTATTA
96147742 TTAT-TATATAT
1 TTATGTATATAT
* *
96147753 TTGTGTATATTT
1 TTATGTATATAT
96147765 TTATGTATATAT
1 TTATGTATATAT
* *
96147777 ATATTTATATAT
1 TTATGTATATAT
96147789 AGTATTGTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
11 3 0.10
12 26 0.90
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (12 bp):
TTATGTATATAT
Found at i:96150388 original size:19 final size:19
Alignment explanation
Indices: 96150366--96150412 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
96150356 CTTCCTTTCT
96150366 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
*
96150385 TTTGCATTACATTGCAACA
1 TTTGCATTACATTCCAACA
96150404 TTTGCATTA
1 TTTGCATTA
96150413 AACTTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:96154911 original size:65 final size:60
Alignment explanation
Indices: 96154801--96154925 Score: 196
Period size: 61 Copynumber: 2.0 Consensus size: 60
96154791 TCTACAATAA
96154801 CACATTTAGTTAGGAGCATTTGATTCATTTCATAACATCCTAATTATTTGACATAAAGCAT
1 CACATTTAGTTAGGAGCATTTGATTCATTTCATAACATCCTAATTATTTGACAT-AAGCAT
*
96154862 CACATTTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATTTAGTTAGGAGCATTTGATTCATTTC-AT-A-A-CATCCTAATTATTTGACATAAGCAT
96154926 GGATACATGA
Statistics
Matches: 59, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
61 31 0.53
62 2 0.03
63 1 0.02
64 7 0.12
65 18 0.31
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.38
Consensus pattern (60 bp):
CACATTTAGTTAGGAGCATTTGATTCATTTCATAACATCCTAATTATTTGACATAAGCAT
Found at i:96155435 original size:205 final size:205
Alignment explanation
Indices: 96155070--96155453 Score: 608
Period size: 205 Copynumber: 1.9 Consensus size: 205
96155060 ATCAGGCGGA
* * * *
96155070 GAGCAGATCGAAGACATAGCTGATTTAGCTTTCACGTATTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAAACATAGCTGATTTAGCTTTCACGTACTTACGTTAAAGCAAATCTAAGATGAT
*
96155135 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAATCTAGCATCTCCACTTTGACGGAAGGGAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAATCTAGCATCTCCACTTCGACGGAAGGGAGA
* *
96155200 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
131 CACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
96155265 TGCTTACAAG
196 TGCTTACAAG
* *
96155275 GAGCAAATCGAAAACATAGCTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAAACATAGCTGATTTAGCTTTCACGTACTTACGTTAAAGCAAATCTAAGATGAT
* * * *
96155340 TTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTCTGGCATCTCCACTTCGATGG-AGGGTAG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAATCTAGCATCTCCACTTCGACGGAAGGG-AG
* * *
96155404 ACACATAGCAGATTCAGCCTTCAAATGTTTATACTGAAGCAGATCGAAGA
130 ACACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGA
96155454 CATAGCTGAT
Statistics
Matches: 162, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
204 4 0.02
205 158 0.98
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (205 bp):
GAGCAAATCGAAAACATAGCTGATTTAGCTTTCACGTACTTACGTTAAAGCAAATCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAATCTAGCATCTCCACTTCGACGGAAGGGAGA
CACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
TGCTTACAAG
Found at i:96156662 original size:132 final size:132
Alignment explanation
Indices: 96155544--96156648 Score: 1773
Period size: 132 Copynumber: 8.4 Consensus size: 132
96155534 TCGAAGATTA
* * *
96155544 CAGATTTGGCATCCCTGTGTTTATAGGAAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
* * *
96155609 TACAATGAAGCAGATCGAAGATTTCAGCATGGCATCCATGTGCTTATAGGGAACAAGTTAAAAAC
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
96155674 AG
131 AG
* * **
96155676 TAGATTTGGCATCCCTGTGCTTATAGGGAATAGATCGAAGATAATAGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
* *
96155741 TACAATGAAGCAGATCGAAGATTTCAGCATGGCATTCCTGTGCTTATAGGGAACAAGTTGAAAAC
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
*
96155806 AA
131 AG
*
96155808 CAGATTTGGCAT-CCTCGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTATGC
1 CAGATTTGGCATCCCT-GTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
*
96155872 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTACTTATAGGGAACAAGTTGAAAA
65 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
96155937 CAG
130 CAG
* * *
96155940 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTAACATTCCTATACT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
* * *
96156005 TACAGTGAAGCAGATCGAAGATTTCAGTATGGCATCCCTGTGCTTATAGGGAACAAGTCGAAAAT
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
96156070 AG
131 AG
* ** **
96156072 CAGATTTGACATCCCTGTATTTATAGGGAACAGATCGAAGATAATAGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
* * * * *
96156137 TACGGTGAAGCAGATCGAAGATTTCAGTATGGCATCCCAGTGCTTATAGGGAACAAGTTGAAGAT
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
96156202 AG
131 AG
* *
96156204 CAGATTTGGCATCCCTGTGCTTATAGAGAACAGATTGAAGATAGCAGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
*
96156269 TACAGTGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
96156334 AG
131 AG
96156336 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
* *
96156401 TACAGTGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTACTTATAGGGAACAAGTTGAAAAC
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
96156466 AG
131 AG
* * *
96156468 CAGATTTGGCATCCCTGTGCTTATAGAGAACAGATCAAAGATAGCGGATCTGACATTCCTGTGCT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
* * * *
96156533 TACGGTGAAGCAGATCGAAGATTTCAGCATGGAATCCCTGTGCTTATAGGGAACAAGTTGAAGAT
66 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
96156598 AG
131 AG
* *
96156600 CAGATTTGGCATCCCTGTGCTTATAGGGAACA-AGTTGAAGACAGCAGAT
1 CAGATTTGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGAT
96156649 TTGGTATCCC
Statistics
Matches: 902, Mismatches: 68, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
131 4 0.00
132 895 0.99
133 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
CAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAC
AG
Found at i:96156966 original size:13 final size:13
Alignment explanation
Indices: 96156948--96157041 Score: 74
Period size: 13 Copynumber: 7.5 Consensus size: 13
96156938 AAATATCTTT
96156948 ACTCCACTAAACC
1 ACTCCACTAAACC
* **
96156961 ACTCCAACCACTCC
1 ACTCC-ACTAAACC
* *
96156975 A-ACCACTCCAACC
1 ACTCCACT-AAACC
96156988 ACTCCACTAAACC
1 ACTCCACTAAACC
96157001 ACT---CT-AACC
1 ACTCCACTAAACC
96157010 AC-CCTACTAAACC
1 ACTCC-ACTAAACC
96157023 ACTCCACTAAACC
1 ACTCCACTAAACC
96157036 ACTCCA
1 ACTCCA
96157042 ACCACTCCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
9 6 0.10
10 2 0.03
12 4 0.06
13 37 0.60
14 13 0.21
ACGTcount: A:0.36, C:0.49, G:0.00, T:0.15
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:96156973 original size:22 final size:22
Alignment explanation
Indices: 96156948--96157028 Score: 109
Period size: 22 Copynumber: 3.9 Consensus size: 22
96156938 AAATATCTTT
96156948 ACTCCACTAAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
96156970 ACT-C-C--AACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
*
96156988 ACTCCACTAAACCACTCTAACC
1 ACTCCACTAAACCACTCCAACC
96157010 AC-CCTACTAAACCACTCCA
1 ACTCC-ACTAAACCACTCCA
96157029 CTAAACCACT
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
18 16 0.31
19 1 0.02
20 2 0.04
21 3 0.06
22 30 0.58
ACGTcount: A:0.36, C:0.49, G:0.00, T:0.15
Consensus pattern (22 bp):
ACTCCACTAAACCACTCCAACC
Found at i:96157011 original size:9 final size:9
Alignment explanation
Indices: 96156957--96156993 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
96156947 TACTCCACTA
96156957 AACCACTCC
1 AACCACTCC
96156966 AACCACTCC
1 AACCACTCC
96156975 AACCACTCC
1 AACCACTCC
96156984 AACCACTCC
1 AACCACTCC
96156993 A
1 A
96156994 CTAAACCACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.35, C:0.54, G:0.00, T:0.11
Consensus pattern (9 bp):
AACCACTCC
Found at i:96157511 original size:9 final size:9
Alignment explanation
Indices: 96157455--96157521 Score: 50
Period size: 9 Copynumber: 7.1 Consensus size: 9
96157445 TTTTTTTTAT
96157455 TTTATTATT-
1 TTTA-TATTA
96157464 TTTACTATTA
1 TTTA-TATTA
96157474 TTTATATTA
1 TTTATATTA
*
96157483 -TTATTTCTCA
1 TTTATAT-T-A
96157493 TGTATATATTA
1 T-T-TATATTA
96157504 TTTATATTA
1 TTTATATTA
96157513 -TTATATTA
1 TTTATATTA
96157521 T
1 T
96157522 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
8 13 0.27
9 21 0.44
10 6 0.12
11 2 0.04
12 2 0.04
13 4 0.08
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.64
Consensus pattern (9 bp):
TTTATATTA
Found at i:96157522 original size:24 final size:24
Alignment explanation
Indices: 96157450--96157525 Score: 64
Period size: 24 Copynumber: 2.9 Consensus size: 24
96157440 TTTATTTTTT
* *
96157450 TTTATTTTATTAT-TTTTACTATTA
1 TTTATATTATTATATTATA-TATTA
96157474 TTTATATTATTATTTCTCATGTATATATTA
1 TTTATATTATTA----T-AT-TATATATTA
96157504 TTTATATTATTATATTATATAT
1 TTTATATTATTATATTATATAT
96157526 GCCCTCTCCA
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
24 18 0.42
25 2 0.05
26 1 0.02
28 1 0.02
30 18 0.42
31 3 0.07
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.64
Consensus pattern (24 bp):
TTTATATTATTATATTATATATTA
Found at i:96162015 original size:31 final size:30
Alignment explanation
Indices: 96161970--96162050 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 30
96161960 AATGCGTATG
*
96161970 ATTAAATCAAAATTAAAGTTTCAAC-TATATA
1 ATTAAA-CCAAATTAAAGTTTC-ACGTATATA
* * *
96162001 TTTAAACCACAATTAGAGTTTCACGTGTATA
1 ATTAAACCA-AATTAAAGTTTCACGTATATA
*
96162032 ATTACACCAAATTAAAGTT
1 ATTAAACCAAATTAAAGTT
96162051 CGTGTATGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
30 13 0.32
31 28 0.68
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (30 bp):
ATTAAACCAAATTAAAGTTTCACGTATATA
Found at i:96162713 original size:23 final size:20
Alignment explanation
Indices: 96162685--96162739 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
96162675 AACTATAACA
96162685 AAATATAAATATATTAAATTATT
1 AAATATAAATATATTAAA--A-T
*
96162708 AAATAT---TATGTTAAAAT
1 AAATATAAATATATTAAAAT
96162725 AAATATAAATATATT
1 AAATATAAATATATT
96162740 TTTAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 9
0.71 0.05 0.24
Matches are distributed among these distances:
17 7 0.26
18 1 0.04
20 13 0.48
23 6 0.22
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
AAATATAAATATATTAAAAT
Found at i:96165959 original size:24 final size:25
Alignment explanation
Indices: 96165909--96165960 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
96165899 AATCTTAAGA
* ** *
96165909 AAATTTTATTCAATTATTTTTATTT
1 AAATTTAATTCAATTATCATTACTT
96165934 AAATTTAATT-AATTATCATTACTT
1 AAATTTAATTCAATTATCATTACTT
96165958 AAA
1 AAA
96165961 AAGTTTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (25 bp):
AAATTTAATTCAATTATCATTACTT
Found at i:96169839 original size:17 final size:17
Alignment explanation
Indices: 96169783--96169912 Score: 67
Period size: 17 Copynumber: 7.7 Consensus size: 17
96169773 ACTTAATCAC
*
96169783 TTTAATATTAAATTTAA
1 TTTAATATTAAATTAAA
* *
96169800 TCTAATATT-TATTAAGA
1 TTTAATATTAAATTAA-A
* *
96169817 -TAAATATTAGATTAAA
1 TTTAATATTAAATTAAA
96169833 TTTAATATT-AATATAATCA
1 TTTAATATTAAAT-TAA--A
96169852 CTTTAATATTAAATT-AA
1 -TTTAATATTAAATTAAA
** *
96169869 TAAAATACT--ATTAAGA
1 TTTAATATTAAATTAA-A
* *
96169885 -TAAATATTAAATTTAA
1 TTTAATATTAAATTAAA
96169901 TTTAATATTAAA
1 TTTAATATTAAA
96169913 CTATAAAATA
Statistics
Matches: 85, Mismatches: 15, Indels: 26
0.67 0.12 0.21
Matches are distributed among these distances:
14 3 0.04
15 7 0.08
16 21 0.25
17 39 0.46
19 2 0.02
20 10 0.12
21 3 0.04
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (17 bp):
TTTAATATTAAATTAAA
Found at i:96169903 original size:68 final size:70
Alignment explanation
Indices: 96169776--96169911 Score: 213
Period size: 68 Copynumber: 2.0 Consensus size: 70
96169766 TGATTAAACT
** * *
96169776 TAATCACTTTAATATTAAATTTAATCTAATATTTATTAAGATAAATATTAGATTAAATTTAATAT
1 TAATCACTTTAATATTAAATTTAATAAAATATCTATTAAGATAAATATTAAATTAAATTTAATAT
96169841 TAATA
66 TAATA
*
96169846 TAATCACTTTAATATTAAA-TTAATAAAATA-CTATTAAGATAAATATTAAATTTAATTTAATAT
1 TAATCACTTTAATATTAAATTTAATAAAATATCTATTAAGATAAATATTAAATTAAATTTAATAT
96169909 TAA
66 TAA
96169912 ACTATAAAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
68 33 0.54
69 9 0.15
70 19 0.31
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (70 bp):
TAATCACTTTAATATTAAATTTAATAAAATATCTATTAAGATAAATATTAAATTAAATTTAATAT
TAATA
Found at i:96171792 original size:28 final size:27
Alignment explanation
Indices: 96171761--96171817 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
96171751 TAAAATAGAA
* *
96171761 TATACACAAAGATTTAAAATAAATCATG
1 TATACA-AAAAATTTAAAATAAATAATG
*
96171789 TATATAAAAAATTTAAAATAAATAATG
1 TATACAAAAAATTTAAAATAAATAATG
96171816 TA
1 TA
96171818 AAAATAATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.81
28 5 0.19
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (27 bp):
TATACAAAAAATTTAAAATAAATAATG
Found at i:96172464 original size:23 final size:23
Alignment explanation
Indices: 96172438--96172486 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
96172428 GCTCCAATAT
*
96172438 TAACAATAACGA-AAATAATAGAA
1 TAACAACAACGACAAATAA-AGAA
*
96172461 TAACAACAATGACAAATAAAGAA
1 TAACAACAACGACAAATAAAGAA
96172484 TAA
1 TAA
96172487 TAATGATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.65, C:0.10, G:0.08, T:0.16
Consensus pattern (23 bp):
TAACAACAACGACAAATAAAGAA
Found at i:96172641 original size:24 final size:23
Alignment explanation
Indices: 96172596--96172650 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 23
96172586 CAATAATAGA
96172596 ATTAA-TAATAAAAATAAAGTTG
1 ATTAATTAATAAAAATAAAGTTG
96172618 ATTAATTAATAAAAA-AAATGGTTG
1 ATTAATTAATAAAAATAAA--GTTG
96172642 ATTAATTAA
1 ATTAATTAA
96172651 AAAGGACTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 8 0.27
23 9 0.30
24 13 0.43
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (23 bp):
ATTAATTAATAAAAATAAAGTTG
Found at i:96174589 original size:75 final size:75
Alignment explanation
Indices: 96174472--96174662 Score: 339
Period size: 75 Copynumber: 2.6 Consensus size: 75
96174462 GTGAGCCAAT
*
96174472 GCTCAACTCACCTTTCGCAA-TATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCGGC
*
96174536 GTGTCCCGAG
66 GTGCCCCGAG
* *
96174546 GCTCTACTCACCTCTCGCAATTATGAGTTGATTTTTTTTAAAGTAGAATTTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCGGC
96174611 GTGCCCCGAG
66 GTGCCCCGAG
96174621 GCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTGAAA
1 GCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTGAAA
96174663 ACAGAAATGA
Statistics
Matches: 110, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
74 18 0.16
75 92 0.84
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (75 bp):
GCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCGGC
GTGCCCCGAG
Found at i:96187288 original size:33 final size:33
Alignment explanation
Indices: 96187241--96187305 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
96187231 ATTTAAAAAA
*
96187241 GTATGTATATATATACATAATAATTTAGAGTAT
1 GTATATATATATATACATAATAATTTAGAGTAT
96187274 GTATATATATATATACATAATAATTTAGAGTA
1 GTATATATATATATACATAATAATTTAGAGTA
96187306 AAAAGATACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.45, C:0.03, G:0.11, T:0.42
Consensus pattern (33 bp):
GTATATATATATATACATAATAATTTAGAGTAT
Found at i:96187319 original size:33 final size:33
Alignment explanation
Indices: 96187249--96187319 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 33
96187239 AAGTATGTAT
*** * *
96187249 ATATATACATAATAATTTAGAGTATGTATATAT
1 ATATATACATAATAATTTAGAGTAAAAAGATAC
96187282 ATATATACATAATAATTTAGAGTAAAAAGATAC
1 ATATATACATAATAATTTAGAGTAAAAAGATAC
96187315 ATATA
1 ATATA
96187320 AAAATTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.37
Consensus pattern (33 bp):
ATATATACATAATAATTTAGAGTAAAAAGATAC
Found at i:96187654 original size:23 final size:25
Alignment explanation
Indices: 96187610--96187657 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
96187600 CTCCAATATT
96187610 AACAATAACGAAAATAATAGAATAAC
1 AACAATAAC-AAAATAATAGAATAAC
96187636 AACAATAAC-AAATAA-AGAATAA
1 AACAATAACAAAATAATAGAATAA
96187658 TAATGATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.32
24 6 0.27
26 9 0.41
ACGTcount: A:0.69, C:0.10, G:0.06, T:0.15
Consensus pattern (25 bp):
AACAATAACAAAATAATAGAATAAC
Found at i:96187800 original size:26 final size:22
Alignment explanation
Indices: 96187767--96187823 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
96187757 CAATAATAGA
*
96187767 ATTAA-TAATAAAAATAAAGTTG
1 ATTAATTAATAAAAA-ATAGTTG
*
96187789 ATTAATTAATAAAAAATGGTTG
1 ATTAATTAATAAAAAATAGTTG
96187811 ATTAATTAA-AAAA
1 ATTAATTAATAAAA
96187824 TGACTATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 4 0.12
22 19 0.59
23 9 0.28
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (22 bp):
ATTAATTAATAAAAAATAGTTG
Found at i:96191093 original size:87 final size:86
Alignment explanation
Indices: 96190947--96191120 Score: 287
Period size: 87 Copynumber: 2.0 Consensus size: 86
96190937 ATATTAAGAT
* *
96190947 CTTTTTAATAAATGTCTTTACCCTTATTCTCAAATCACCAAATTAATTCCTATTTTCAACAAAAA
1 CTTTTGAATAAATGCCTTTACCCTTATTCTCAAATCACCAAATTAATTCCTATTTTCAACAAAAA
96191012 TCAACACCATCATGCCGCTCAC
66 TCAACA-CATCATGCCGCTCAC
*
96191034 CTTTTGAATAAATGCCTTTACTCTTATTCTCAAATCACCAAATTAATT-CTCATTTTCAACAAAA
1 CTTTTGAATAAATGCCTTTACCCTTATTCTCAAATCACCAAATTAATTCCT-ATTTTCAACAAAA
*
96191098 ATCAACACATCGTGCCGCTCAC
65 ATCAACACATCATGCCGCTCAC
96191120 C
1 C
96191121 AACCGCTAAT
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
86 17 0.21
87 65 0.79
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.34
Consensus pattern (86 bp):
CTTTTGAATAAATGCCTTTACCCTTATTCTCAAATCACCAAATTAATTCCTATTTTCAACAAAAA
TCAACACATCATGCCGCTCAC
Found at i:96191337 original size:14 final size:13
Alignment explanation
Indices: 96191306--96191366 Score: 61
Period size: 13 Copynumber: 4.6 Consensus size: 13
96191296 AATATGTTTC
96191306 TTAATTTTATAAT
1 TTAATTTTATAAT
* *
96191319 CTAATTTTTTAAAT
1 TTAATTTTAT-AAT
*
96191333 TTAA-TTTATATT
1 TTAATTTTATAAT
*
96191345 TTAATTGTATAAT
1 TTAATTTTATAAT
96191358 TTAAATTTT
1 TT-AATTTT
96191367 CATTAGATTT
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
12 6 0.16
13 20 0.54
14 11 0.30
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (13 bp):
TTAATTTTATAAT
Found at i:96191811 original size:29 final size:33
Alignment explanation
Indices: 96191764--96191823 Score: 83
Period size: 30 Copynumber: 1.9 Consensus size: 33
96191754 ATCTTAATCA
96191764 ATAAATAATATTTCATTTA-AATTAAAATAAAT
1 ATAAATAATATTTCATTTATAATTAAAATAAAT
*
96191796 ATAAAT-AT-TTTC-TTTATATTTAAAATAA
1 ATAAATAATATTTCATTTATAATTAAAATAA
96191824 CTTTCTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 4 0.15
30 14 0.54
31 2 0.08
32 6 0.23
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (33 bp):
ATAAATAATATTTCATTTATAATTAAAATAAAT
Found at i:96201188 original size:12 final size:12
Alignment explanation
Indices: 96201171--96201195 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
96201161 TATGTATGTT
96201171 TGAAAATTTTTA
1 TGAAAATTTTTA
96201183 TGAAAATTTTTA
1 TGAAAATTTTTA
96201195 T
1 T
96201196 TATTATTTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:96201244 original size:25 final size:27
Alignment explanation
Indices: 96201216--96201268 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
96201206 TGTATTATTA
96201216 ATATTT-GAAAATT-TTATTATTAGAT
1 ATATTTAGAAAATTATTATTATTAGAT
*
96201241 ATATTTATAAAATTATTATTATTAGAT
1 ATATTTAGAAAATTATTATTATTAGAT
96201268 A
1 A
96201269 GAAAAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 6 0.24
26 6 0.24
27 13 0.52
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (27 bp):
ATATTTAGAAAATTATTATTATTAGAT
Found at i:96201276 original size:24 final size:24
Alignment explanation
Indices: 96201223--96201277 Score: 58
Period size: 27 Copynumber: 2.2 Consensus size: 24
96201213 TTAATATTTG
* *
96201223 AAAATTTTATTATTAGATATATTTAT
1 AAAATTTTATTATTAGATAGA--TAA
96201249 AAAATTATTATTATTAGATAGA-AA
1 AAAATT-TTATTATTAGATAGATAA
96201273 AAAAT
1 AAAAT
96201278 AAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 6 0.23
26 6 0.23
27 14 0.54
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (24 bp):
AAAATTTTATTATTAGATAGATAA
Found at i:96203027 original size:8 final size:8
Alignment explanation
Indices: 96203014--96203053 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
96203004 CTAGATCGGT
96203014 AAAAGCCG
1 AAAAGCCG
*
96203022 AAAAGCCA
1 AAAAGCCG
*
96203030 AAAAGTCG
1 AAAAGCCG
*
96203038 AAAAGCCA
1 AAAAGCCG
96203046 AAAAGCCG
1 AAAAGCCG
96203054 GCATTTGTGA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.55, C:0.23, G:0.20, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:96203039 original size:16 final size:16
Alignment explanation
Indices: 96203014--96203053 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
96203004 CTAGATCGGT
96203014 AAAAGCCGAAAAGCCA
1 AAAAGCCGAAAAGCCA
*
96203030 AAAAGTCGAAAAGCCA
1 AAAAGCCGAAAAGCCA
96203046 AAAAGCCG
1 AAAAGCCG
96203054 GCATTTGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.55, C:0.23, G:0.20, T:0.03
Consensus pattern (16 bp):
AAAAGCCGAAAAGCCA
Found at i:96203706 original size:20 final size:21
Alignment explanation
Indices: 96203663--96203708 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
96203653 ACTGTTCTGT
96203663 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
96203683 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
96203702 TATGGGC
1 TATGGGC
96203709 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:96205858 original size:111 final size:110
Alignment explanation
Indices: 96205664--96205889 Score: 251
Period size: 111 Copynumber: 2.0 Consensus size: 110
96205654 TAATGGCAGG
* *
96205664 CACCAGATTCATTTAAAAAAATTTTGGGTGTTGGCCAGTAGATAATCAGCACCAAGTACATTTTT
1 CACCAGATTCATTTAAAAAAAATTTGGGTGTTGGCCAGTAGATAAGCAGCACCAAGTACATTTTT
* * * *
96205729 AGGTCCCAAAACATTTTTTTTTCACCTTGGGACACTAATGGTCGA
66 AAGTCCCAAAACACTTTTTTTTCACCTTGGGACACTAATGGCCAA
* * *
96205774 CACCAG-TGTCATTTAAAAAACAATTTGGGTGTTGAG-TAGTAGAT-GGCAGGCACCAAGTGCAT
1 CACCAGAT-TCATTTAAAAAA-AATTTGGGTGTTG-GCCAGTAGATAAGCA-GCACCAAGTACAT
*** ** * *
96205836 TTTTAAGTCCCAAGGTACTTTTTTTTTGCTTTGGGACACTGATGGCCAA
62 TTTTAAGTCCCAAAACACTTTTTTTTCACCTTGGGACACTAATGGCCAA
96205885 CACCA
1 CACCA
96205890 CCTTTTTCAG
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
109 1 0.01
110 20 0.21
111 74 0.77
112 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (110 bp):
CACCAGATTCATTTAAAAAAAATTTGGGTGTTGGCCAGTAGATAAGCAGCACCAAGTACATTTTT
AAGTCCCAAAACACTTTTTTTTCACCTTGGGACACTAATGGCCAA
Found at i:96206100 original size:12 final size:12
Alignment explanation
Indices: 96206085--96206110 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
96206075 TCCATTTGAG
96206085 TTTTTGTTTGCT
1 TTTTTGTTTGCT
96206097 TTTTTGTTTGCT
1 TTTTTGTTTGCT
96206109 TT
1 TT
96206111 ATTAGTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.15, T:0.77
Consensus pattern (12 bp):
TTTTTGTTTGCT
Found at i:96208960 original size:22 final size:21
Alignment explanation
Indices: 96208935--96209007 Score: 58
Period size: 22 Copynumber: 3.4 Consensus size: 21
96208925 CGTCAAAGGC
96208935 CCATGTGAAGAGGGGCACACGG
1 CCATGTGAAGA-GGGCACACGG
* *
96208957 CCATGTGACTGA-GGCACACGC
1 CCATGTGA-AGAGGGCACACGG
* * *
96208978 CCGTATGAAGAGAGGCACACAG
1 CCATGTGAAGAG-GGCACACGG
*
96209000 CCGTGTGA
1 CCATGTGA
96209008 CCGAGGCACA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
20 2 0.05
21 14 0.35
22 22 0.55
23 2 0.05
ACGTcount: A:0.27, C:0.26, G:0.34, T:0.12
Consensus pattern (21 bp):
CCATGTGAAGAGGGCACACGG
Found at i:96208974 original size:21 final size:21
Alignment explanation
Indices: 96208948--96209027 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 21
96208938 TGTGAAGAGG
* *
96208948 GGCACACGGCCATGTGACTGA
1 GGCACACGGCCGTGTGACAGA
* * *
96208969 GGCACACGCCCGTATGAAGAGA
1 GGCACACGGCCGTGTG-ACAGA
* *
96208991 GGCACACAGCCGTGTGACCGA
1 GGCACACGGCCGTGTGACAGA
* *
96209012 GGCACAAGCCCGTGTG
1 GGCACACGGCCGTGTG
96209028 GACCAGGGAC
Statistics
Matches: 45, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
21 29 0.64
22 16 0.36
ACGTcount: A:0.25, C:0.30, G:0.34, T:0.11
Consensus pattern (21 bp):
GGCACACGGCCGTGTGACAGA
Found at i:96209007 original size:43 final size:43
Alignment explanation
Indices: 96208940--96209024 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
96208930 AAGGCCCATG
* * * *
96208940 TGAAGAGGGGCACACGGCCATGTGACTGAGGCACACGCCCGTA
1 TGAAGAGAGGCACACAGCCATGTGACCGAGGCACAAGCCCGTA
*
96208983 TGAAGAGAGGCACACAGCCGTGTGACCGAGGCACAAGCCCGT
1 TGAAGAGAGGCACACAGCCATGTGACCGAGGCACAAGCCCGT
96209025 GTGGACCAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.27, C:0.28, G:0.34, T:0.11
Consensus pattern (43 bp):
TGAAGAGAGGCACACAGCCATGTGACCGAGGCACAAGCCCGTA
Found at i:96211379 original size:15 final size:15
Alignment explanation
Indices: 96211359--96211389 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
96211349 TACATATTTT
96211359 TTTTCTTATTCCTAA
1 TTTTCTTATTCCTAA
96211374 TTTTCTTATTCCTAA
1 TTTTCTTATTCCTAA
96211389 T
1 T
96211390 CTAAAACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTTCTTATTCCTAA
Found at i:96211457 original size:44 final size:44
Alignment explanation
Indices: 96211391--96211581 Score: 355
Period size: 44 Copynumber: 4.3 Consensus size: 44
96211381 ATTCCTAATC
* * *
96211391 TAAAACACATTAAATTACAATACAATATACATGCATATTTAATT
1 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
96211435 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
1 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
96211479 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
1 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
96211523 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
1 TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
96211567 TAAAACACATTAAAT
1 TAAAACACATTAAAT
96211582 ATATTAATTC
Statistics
Matches: 144, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 144 1.00
ACGTcount: A:0.51, C:0.12, G:0.01, T:0.37
Consensus pattern (44 bp):
TAAAACACATTAAATTATAATACAATATACATACATATTTATTT
Found at i:96212016 original size:20 final size:21
Alignment explanation
Indices: 96211980--96212094 Score: 78
Period size: 20 Copynumber: 5.4 Consensus size: 21
96211970 ACGTAAGTTA
96211980 AAATGGAAAATGAAATAAATTT
1 AAAT-GAAAATGAAATAAATTT
96212002 AAATGAAAA-GAAATAAATTT
1 AAATGAAAATGAAATAAATTT
* * * *
96212022 AGATG-AAATCAAAT-GA--G
1 AAATGAAAATGAAATAAATTT
* *
96212039 AAATGAAAATGAAATCAATTGAG
1 AAATGAAAATGAAATAAATT--T
*
96212062 AAATGAAAATTGAAATTTAAATTG
1 AAATGAAAA-TGAAA--TAAATTT
96212086 AAATGAAAA
1 AAATGAAAA
96212095 AAGAAAAATT
Statistics
Matches: 75, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
17 4 0.05
18 8 0.11
19 5 0.07
20 19 0.25
21 5 0.07
22 4 0.05
23 10 0.13
24 15 0.20
26 5 0.07
ACGTcount: A:0.59, C:0.02, G:0.15, T:0.24
Consensus pattern (21 bp):
AAATGAAAATGAAATAAATTT
Found at i:96212050 original size:23 final size:23
Alignment explanation
Indices: 96212024--96212094 Score: 90
Period size: 23 Copynumber: 3.0 Consensus size: 23
96212014 ATAAATTTAG
96212024 ATGAAATCAAATGAGAAATGAAA
1 ATGAAATCAAATGAGAAATGAAA
*
96212047 ATGAAATCAATTGAGAAATGAAA
1 ATGAAATCAAATGAGAAATGAAA
* *
96212070 ATTGAAATTTAAAT-TGAAATGAAA
1 A-TGAAA-TCAAATGAGAAATGAAA
96212094 A
1 A
96212095 AAGAAAAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
23 23 0.55
24 15 0.36
25 4 0.10
ACGTcount: A:0.58, C:0.03, G:0.15, T:0.24
Consensus pattern (23 bp):
ATGAAATCAAATGAGAAATGAAA
Found at i:96212076 original size:12 final size:12
Alignment explanation
Indices: 96212061--96212094 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
96212051 AATCAATTGA
96212061 GAAATGAAAATT
1 GAAATGAAAATT
**
96212073 GAAATTTAAATT
1 GAAATGAAAATT
96212085 GAAATGAAAA
1 GAAATGAAAA
96212095 AAGAAAAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (12 bp):
GAAATGAAAATT
Found at i:96213762 original size:90 final size:90
Alignment explanation
Indices: 96213613--96214028 Score: 597
Period size: 90 Copynumber: 4.6 Consensus size: 90
96213603 ATTCTAGAAT
* * * * * *
96213613 ATTAATACACAAAAATATAAAATTCAAAC-AAAAATAATACGGACTAAAATAAATTTAAACACCC
1 ATTAATACACGAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCC
96213677 AACAAACTACAAATAGATGGGTAAA
66 AACAAACTACAAATAGATGGGTAAA
* *
96213702 ATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCT
1 ATTAATACACGAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCC
96213767 AACAAACTACAAATAGATGGGTAAA
66 AACAAACTACAAATAGATGGGTAAA
* * ** **
96213792 ATTAATGCATGAAAATTTTAGTTTCAAACT-CTATATAATACAAAC-AAATTAAATTTAAACACC
1 ATTAATACACGAAAATTTTAAATTCAAACTAC-ATATAATACGGACTAAATTAAATTTAAACACC
*
96213855 CAACAAACTACAAACAGATGGGTAAA
65 CAACAAACTACAAATAGATGGGTAAA
** * * *
96213881 ATTAATGTACGAAAATTTTAATTTCAAACT-CTATATAATACAGATTAAATTAAATTTAAACACC
1 ATTAATACACGAAAATTTTAAATTCAAACTAC-ATATAATACGGACTAAATTAAATTTAAACACC
96213945 CAACAAACTACAAATAGATGGGTAAA
65 CAACAAACTACAAATAGATGGGTAAA
*
96213971 ATTAATACACGAAAATTTTAAATTTAAACTACATATAATACGGACTAAATTAAATTTA
1 ATTAATACACGAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTA
96214029 CAAATACAAA
Statistics
Matches: 296, Mismatches: 27, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
89 110 0.37
90 185 0.62
91 1 0.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (90 bp):
ATTAATACACGAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCC
AACAAACTACAAATAGATGGGTAAA
Found at i:96213935 original size:179 final size:180
Alignment explanation
Indices: 96213613--96214028 Score: 572
Period size: 179 Copynumber: 2.3 Consensus size: 180
96213603 ATTCTAGAAT
* * * * * * ** *
96213613 ATTAATACACAAAAATATAAAATTCAAAC-AAAAATAATACGGACTAAAATAAATTTAAACACCC
1 ATTAATACACGAAAATTTTAAATTTAAACTACATATAATACAAACTAAATTAAATTTAAACACCC
*
96213677 AACAAACTACAAATAGATGGGTAAAATTAATACACAAAAATTTTAAATTCAAACTACATATAATA
66 AACAAACTACAAACAGATGGGTAAAATTAATACACAAAAATTTTAAATTCAAACTACATATAATA
* *
96213742 CGGACTAAATTAAATTTAAACACCTAACAAACTACAAATAGATGGGTAAA
131 CAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAA
* * *
96213792 ATTAATGCATGAAAATTTT-AGTTTCAAACT-CTATATAATACAAAC-AAATTAAATTTAAACAC
1 ATTAATACACGAAAATTTTAAATTT-AAACTAC-ATATAATACAAACTAAATTAAATTTAAACAC
** * *
96213854 CCAACAAACTACAAACAGATGGGTAAAATTAATGTACGAAAATTTTAATTTCAAACT-CTATATA
64 CCAACAAACTACAAACAGATGGGTAAAATTAATACACAAAAATTTTAAATTCAAACTAC-ATATA
*
96213918 ATACAGATTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAA
128 ATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAA
**
96213971 ATTAATACACGAAAATTTTAAATTTAAACTACATATAATACGGACTAAATTAAATTTA
1 ATTAATACACGAAAATTTTAAATTTAAACTACATATAATACAAACTAAATTAAATTTA
96214029 CAAATACAAA
Statistics
Matches: 205, Mismatches: 25, Indels: 13
0.84 0.10 0.05
Matches are distributed among these distances:
178 4 0.02
179 174 0.85
180 27 0.13
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (180 bp):
ATTAATACACGAAAATTTTAAATTTAAACTACATATAATACAAACTAAATTAAATTTAAACACCC
AACAAACTACAAACAGATGGGTAAAATTAATACACAAAAATTTTAAATTCAAACTACATATAATA
CAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAA
Found at i:96214064 original size:179 final size:178
Alignment explanation
Indices: 96213662--96214075 Score: 489
Period size: 179 Copynumber: 2.3 Consensus size: 178
96213652 CGGACTAAAA
* * * * * *
96213662 TAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAAATTAATACACAAAAATTTTAAATTC
1 TAAATTTAAACACACAAAAAAATACAAACA-ATGGCTAAAATTAATACACGAAAATTTTAAATTC
* *
96213727 AAACTACATATAATACGGACTAAATTAAATTTAAACACCTAACAAACTACAAATAGATGGGTAAA
65 AAACTACATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAA
* * *
96213792 ATTAATGCATGAAAATTTTAGTTTCAAACTCTATATAATACAAACAAAT
130 ATTAATACACGAAAATTTTAATTTCAAACTCTATATAATACAAACAAAT
* * * * ** *
96213841 TAAATTTAAACACCCAACAAACTACAAACAGATGGGTAAAATTAATGTACGAAAATTTTAATTTC
1 TAAATTTAAACACACAAAAAAATACAAACA-ATGGCTAAAATTAATACACGAAAATTTTAAATTC
*
96213906 AAACT-CTATATAATACAGATTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAA
65 AAACTAC-ATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAA
**
96213970 AATTAATACACGAAAATTTTAAATTT-AAACTAC-ATATAATACGGACTAAAT
129 AATTAATACACGAAAATTTT-AATTTCAAACT-CTATATAATACAAAC-AAAT
* * *
96214021 TAAATTTACAA-ATACAAAAAAATATAAAC-AT-TCTAAGAAATTAATACACGAAAAT
1 TAAATTTA-AACACACAAAAAAATACAAACAATGGCT-A-AAATTAATACACGAAAAT
96214076 ATAAAAATGA
Statistics
Matches: 206, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
177 1 0.00
178 4 0.02
179 169 0.82
180 30 0.15
181 2 0.01
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (178 bp):
TAAATTTAAACACACAAAAAAATACAAACAATGGCTAAAATTAATACACGAAAATTTTAAATTCA
AACTACATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAATAGATGGGTAAAA
TTAATACACGAAAATTTTAATTTCAAACTCTATATAATACAAACAAAT
Found at i:96214871 original size:112 final size:114
Alignment explanation
Indices: 96214684--96214915 Score: 335
Period size: 113 Copynumber: 2.1 Consensus size: 114
96214674 CTTGAAAAAG
* *
96214684 TGGTGCTGGCCATCAGTGTCCCAAAGTAAAAAAAAAGTGTCTTAGGACCCAAAAAATGTACTTGA
1 TGGTGCCGGCCATCAGTGGCCCAAAGTAAAAAAAAAGTGTCTTAGGACCCAAAAAATGTACTTGA
* *
96214749 TGCCGGCCATCTACTGGCCAGCACCCAAA-ATTTTTTTTTAAATGAC-A
66 TGCCAGCCATCTACTGGCCAACACCCAAATATTTTTTTTTAAATGACTA
* * *
96214796 CTGGTGCCGGCCATCAGTGGCCTAAAGTAAAAAAAAA-TGTCTTGGGACCCAAAAAATGTATTTG
1 -TGGTGCCGGCCATCAGTGGCCCAAAGTAAAAAAAAAGTGTCTTAGGACCCAAAAAATGTACTTG
* * * *
96214860 GTGCCAGCCATCTATTGGTCAACACCCAAATTTTTTTTTTTAAATGACTA
65 ATGCCAGCCATCTACTGGCCAACACCCAAATATTTTTTTTTAAATGACTA
96214910 TGGTGC
1 TGGTGC
96214916 TGACCATTAC
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
112 50 0.47
113 55 0.52
114 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (114 bp):
TGGTGCCGGCCATCAGTGGCCCAAAGTAAAAAAAAAGTGTCTTAGGACCCAAAAAATGTACTTGA
TGCCAGCCATCTACTGGCCAACACCCAAATATTTTTTTTTAAATGACTA
Found at i:96215821 original size:10 final size:9
Alignment explanation
Indices: 96215797--96215822 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
96215787 TTGGTAAGCT
96215797 CATTTTTGA
1 CATTTTTGA
96215806 CATTTTTGA
1 CATTTTTGA
96215815 CATTTTTG
1 CATTTTTG
96215823 GGCCCTAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.58
Consensus pattern (9 bp):
CATTTTTGA
Found at i:96221180 original size:40 final size:39
Alignment explanation
Indices: 96221124--96221265 Score: 160
Period size: 40 Copynumber: 3.6 Consensus size: 39
96221114 AAGTGTAAAT
* * *
96221124 AGGGGCACGAAAGTGC-ATTCAGGAGTACTGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACT-AA-TACAAAC
* *
96221164 AGGGGCACGTATGTGCAATTTAGGGGTACCTAATACAAAT
1 AGGGGCACGTATGTGCAATTCAGGGGTA-CTAATACAAAC
* * *
96221204 AAGGGCATGTATGTGCAATTCAGGGGTACCAAATACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTA-CTAATACAAAC
*
96221244 AGGGCCACGTATGTGCAATTCA
1 AGGGGCACGTATGTGCAATTCA
96221266 CAATATTTTT
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
40 74 0.85
41 11 0.13
42 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (39 bp):
AGGGGCACGTATGTGCAATTCAGGGGTACTAATACAAAC
Found at i:96223985 original size:18 final size:18
Alignment explanation
Indices: 96223958--96223993 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
96223948 TAATTTCAAT
*
96223958 TTTAATTTTAAATTTTTA
1 TTTAAATTTAAATTTTTA
*
96223976 TTTAAATTTAATTTTTTA
1 TTTAAATTTAAATTTTTA
96223994 AAAATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTAAATTTAAATTTTTA
Found at i:96230516 original size:161 final size:158
Alignment explanation
Indices: 96230064--96230831 Score: 618
Period size: 155 Copynumber: 4.8 Consensus size: 158
96230054 GTTAAATTCT
* * * * * *
96230064 AGTCGTTTTGGTAATCAAATGATATCCCATTTTGTGGTTACTTATAAAGAAG-TGGGAGTTTTAA
1 AGTCATTTTGGTAACCAGATGATAACCCTTTTTGTGGTTACTTATAAAGAAGAT-AGAGTTTTAA
* * ** * *
96230128 --T--GTGGGTGATATGAACTAAATTTCATGTTGGACATGGCTAGAATGGATTTTATCTTGAAAA
65 GGTCAGTGGGTGATATAAAGTAAATTTCATGTTGGACATGATTAGAATGGATATGATCTTGAAAA
* * *
96230189 TGAGTTTTGCTCTGGTTATTGTCTAAAATGTC
130 TGAG-CTTACTTTGGTTATTGTC--AAATGTC
* * * ***** * * *
96230221 AGTCATTTTAGTAA-TAGGGTGATATTTGATTTTGTGGTCACTTACAAAGAAG-TGAAAGTTTTA
1 AGTCATTTTGGTAACCA-GATGATAACCCTTTTTGTGGTTACTTATAAAGAAGAT-AGAGTTTTA
* * *
96230284 ATGTCATTGGGTGATTATAAAGTAAAAATGTATAATTCATGTTGGACATGTTTAGAATGGA-ATT
64 AGGTCAGTGGGTGA-TATAAAGT---AA---AT--TTCATGTTGGACATGATTAGAATGGATA-T
* * *
96230348 TATCTTGAAAATGAGCTTAATTTGGTTATTGTTAAATGTC
119 GATCTTGAAAATGAGCTTACTTTGGTTATTGTCAAATGTC
* **
96230388 AGTCATTTTGGTAACCGGATGATAACCCTTTTTGTAATTACTTATAAAGAAGAAACTAGAGTTTT
1 AGTCATTTTGGTAACCAGATGATAACCCTTTTTGTGGTTACTTATAAAGAAG--A-TAGAGTTTT
* *
96230453 AAGGTCAGTGGGTAATATGAAGTAAATTTCATGTTGGACATGATTAGAATGGATATGATCTTGAA
63 AAGGTCAGTGGGTGATATAAAGTAAATTTCATGTTGGACATGATTAGAATGGATATGATCTTGAA
*
96230518 AATGGGCTTACTTTGGTTATTGTCAAATGTC
128 AATGAGCTTACTTTGGTTATTGTCAAATGTC
*
96230549 AGTCA-TTTGAGTAACCAGATGAT-A-CCTGGATTTGTGGTTACTTAT--A-AAGA-AGAGTTTT
1 AGTCATTTTG-GTAACCAGATGATAACCCT--TTTTGTGGTTACTTATAAAGAAGATAGAGTTTT
* * * ** *
96230607 AAGGTCAGCGGGTGATATTTAAGTAAATTTCATGTTGGACATGTTTACTACGGATATGATCTTGA
63 AAGGTCAGTGGGTGATA-TAAAGTAAATTTCATGTTGGACATGATTAGAATGGATATGATCTTGA
* *
96230672 AAACGAG-TCTACTTTGGTTATCGTCAAATGTC
127 AAATGAGCT-TACTTTGGTTATTGTCAAATGTC
* * * * *** *
96230704 AGTTATTTTGGTAACCTGACGATATCTAATTTTGTGGTTACTTATAAAGAAG-TGGAAGTTTTAA
1 AGTCATTTTGGTAACCAGATGATAACCCTTTTTGTGGTTACTTATAAAGAAGATAG-AGTTTTAA
* * * * * * *
96230768 GGTAAATGGGTGATTTAAAGTAAATTTTATGTTGGCCAT-AGTTAGAATGGACATCATCTTGAAA
65 GGTCAGTGGGTGATATAAAGTAAATTTCATGTTGGACATGA-TTAGAATGGATATGATCTTGAAA
96230832 CAAATTATAA
Statistics
Matches: 494, Mismatches: 82, Indels: 69
0.77 0.13 0.11
Matches are distributed among these distances:
154 24 0.05
155 99 0.20
156 6 0.01
157 51 0.10
158 46 0.09
159 24 0.05
160 5 0.01
161 99 0.20
162 7 0.01
163 2 0.00
165 2 0.00
166 2 0.00
167 45 0.09
168 2 0.00
169 20 0.04
170 59 0.12
171 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (158 bp):
AGTCATTTTGGTAACCAGATGATAACCCTTTTTGTGGTTACTTATAAAGAAGATAGAGTTTTAAG
GTCAGTGGGTGATATAAAGTAAATTTCATGTTGGACATGATTAGAATGGATATGATCTTGAAAAT
GAGCTTACTTTGGTTATTGTCAAATGTC
Found at i:96230714 original size:316 final size:320
Alignment explanation
Indices: 96230092--96230831 Score: 733
Period size: 316 Copynumber: 2.3 Consensus size: 320
96230082 ATGATATCCC
** * * *
96230092 ATTTTGTGGTTACTTATAAAGAAGTGGGAGTTTTAA--T--GTGGGTGATATGAACTAAATTTCA
1 ATTTTGTAATTACTTATAAAGAAGTAGAAGTTTTAAGGTAAGTGGGTGATATGAAGTAAATTTCA
** * * ** *
96230153 TGTTGGACATGGCTAGAATGGATTTTATCTTGAAAATGAGTTTTGCTCTGGTTATTGTCTAAAAT
66 TGTTGGACATGATTAGAATGGATATCATCTTGAAAATGAGGCTTACTCTGGTTATTGTC-AAAAT
* * * * *
96230218 GTCAGTCATTTTAGTAATAGGGTGATATTTGATTTTGTGGTCACTTACAAAGAAGTGAAAGTTTT
130 GTCAGTCATTTGAGTAACAGGATGATACTGGATTTTGTGGTCACTTACAAAGAAG-G-AAGTTTT
* ** * *
96230283 AATGTCATTGGGTGATTATAAAGTAAAAATGTATAATTCATGTTGGACATGTTTAGAATGGAATT
193 AAGGTCAGCGGGTGATTATAAAGT--AAA--TAT-ATTCATGTTGGACATGTTTACAACGGAATT
* * * * *
96230348 TATCTTGAAAATGAGCTTAATTTGGTTATTGTTAAATGTCAGTCATTTTGGTAACCGGATGATAA
253 GATCTTGAAAACGAGCTTAATTTGGTTATCGTCAAATGTCAGTCATTTTGGTAACCGGACGATAA
*
96230413 CCC
318 CCA
* * *
96230416 TTTTTGTAATTACTTATAAAGAAGAAACTAG-AGTTTTAAGGTCAGTGGGTAATATGAAGTAAAT
1 ATTTTGTAATTACTTATAAAGAAG----TAGAAGTTTTAAGGTAAGTGGGTGATATGAAGTAAAT
* *
96230480 TTCATGTTGGACATGATTAGAATGGATATGATCTTGAAAATG-GGCTTACTTTGGTTATTGTC-A
62 TTCATGTTGGACATGATTAGAATGGATATCATCTTGAAAATGAGGCTTACTCTGGTTATTGTCAA
* *
96230543 AATGTCAGTCATTTGAGTAACCA-GATGATACCTGGA-TTTGTGGTTACTTATAAAGAA-G-AGT
127 AATGTCAGTCATTTGAGTAA-CAGGATGATA-CTGGATTTTGTGGTCACTTACAAAGAAGGAAGT
* *
96230604 TTTAAGGTCAGCGGGTGA-TATTTAAGT-AA-AT-TTCATGTTGGACATGTTTACTACGG-ATAT
190 TTTAAGGTCAGCGGGTGATTA-TAAAGTAAATATATTCATGTTGGACATGTTTACAACGGAAT-T
* * *
96230664 GATCTTGAAAACGAG-TCTACTTTGGTTATCGTCAAATGTCAGTTATTTTGGTAACCTGACGATA
253 GATCTTGAAAACGAGCT-TAATTTGGTTATCGTCAAATGTCAGTCATTTTGGTAACCGGACGATA
* *
96230728 TCTA
317 ACCA
** * * * * *
96230732 ATTTTGTGGTTACTTATAAAGAAGTGGAAGTTTTAAGGTAAATGGGTGATTTAAAGTAAATTTTA
1 ATTTTGTAATTACTTATAAAGAAGTAGAAGTTTTAAGGTAAGTGGGTGATATGAAGTAAATTTCA
* *
96230797 TGTTGGCCAT-AGTTAGAATGGACATCATCTTGAAA
66 TGTTGGACATGA-TTAGAATGGATATCATCTTGAAA
96230832 CAAATTATAA
Statistics
Matches: 349, Mismatches: 52, Indels: 41
0.79 0.12 0.09
Matches are distributed among these distances:
312 3 0.01
313 61 0.17
315 3 0.01
316 99 0.28
318 2 0.01
321 2 0.01
323 2 0.01
324 44 0.13
326 1 0.00
327 8 0.02
328 47 0.13
329 5 0.01
330 16 0.05
331 56 0.16
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (320 bp):
ATTTTGTAATTACTTATAAAGAAGTAGAAGTTTTAAGGTAAGTGGGTGATATGAAGTAAATTTCA
TGTTGGACATGATTAGAATGGATATCATCTTGAAAATGAGGCTTACTCTGGTTATTGTCAAAATG
TCAGTCATTTGAGTAACAGGATGATACTGGATTTTGTGGTCACTTACAAAGAAGGAAGTTTTAAG
GTCAGCGGGTGATTATAAAGTAAATATATTCATGTTGGACATGTTTACAACGGAATTGATCTTGA
AAACGAGCTTAATTTGGTTATCGTCAAATGTCAGTCATTTTGGTAACCGGACGATAACCA
Found at i:96237206 original size:30 final size:31
Alignment explanation
Indices: 96237172--96237273 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
96237162 AAAAAAATAA
*
96237172 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
96237202 AAATTTCATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
96237232 AAATTTCACTTAGACCCCTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCCTAAACTTTTC-TCT
96237262 AAATTTCATTTT
1 AAATTTCATTTT
96237274 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.06
30 57 0.92
31 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTCT
Found at i:96237669 original size:3 final size:3
Alignment explanation
Indices: 96237661--96237732 Score: 53
Period size: 3 Copynumber: 24.0 Consensus size: 3
96237651 GCTAGACTTT
* *
96237661 GAA GAA GAA GAA GGAA GAA GAA GGAA AAA GAA -AA GAG GAA GAA GAAA
1 GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA G-AA
*
96237708 GAAA GAA -AA -AA GAA AAA GAA -AA GAA
1 G-AA GAA GAA GAA GAA GAA GAA GAA GAA
96237733 ATAATAAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
2 8 0.14
3 36 0.63
4 13 0.23
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:96237700 original size:24 final size:25
Alignment explanation
Indices: 96237661--96237720 Score: 79
Period size: 24 Copynumber: 2.4 Consensus size: 25
96237651 GCTAGACTTT
*
96237661 GAAGAAGAAGAAGGAAGAAGAAGGAAA
1 GAAGAA-AAG-AGGAAGAAGAAAGAAA
96237688 -AAGAAAAGAGGAAGAAGAAAGAAA
1 GAAGAAAAGAGGAAGAAGAAAGAAA
96237712 GAA-AAAAGA
1 GAAGAAAAGA
96237721 AAAAGAAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 21 0.68
25 5 0.16
26 5 0.16
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (25 bp):
GAAGAAAAGAGGAAGAAGAAAGAAA
Found at i:96237701 original size:18 final size:17
Alignment explanation
Indices: 96237661--96237732 Score: 67
Period size: 18 Copynumber: 4.2 Consensus size: 17
96237651 GCTAGACTTT
* *
96237661 GAAGAAGAAGAAG-GAA
1 GAAGAAGAAAAAGAAAA
96237677 GAAGAAGGAAAAAGAAAA
1 GAAGAA-GAAAAAGAAAA
*
96237695 GAGGAAGAAGAAAG-AAA
1 GAAGAAGAA-AAAGAAAA
*
96237712 GAAAAAAGAAAAAGAAAA
1 G-AAGAAGAAAAAGAAAA
96237730 GAA
1 GAA
96237733 ATAATAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
16 6 0.13
17 19 0.41
18 21 0.46
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (17 bp):
GAAGAAGAAAAAGAAAA
Found at i:96237701 original size:28 final size:29
Alignment explanation
Indices: 96237662--96237732 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
96237652 CTAGACTTTG
* *
96237662 AAGAAGAAGAAGGAAGAAGAAGGAAAAAGAA
1 AAGAAGAAGAAGAAAG-A-AAGAAAAAAGAA
*
96237693 AAGAGGAAGAAGAAAGAAAGAAAAAAGAAA
1 AAGAAGAAGAAGAAAGAAAGAAAAAAG-AA
96237723 AAGAA-AAGAA
1 AAGAAGAAGAA
96237733 ATAATAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
29 14 0.40
30 7 0.20
31 14 0.40
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (29 bp):
AAGAAGAAGAAGAAAGAAAGAAAAAAGAA
Found at i:96237723 original size:35 final size:34
Alignment explanation
Indices: 96237664--96237731 Score: 100
Period size: 35 Copynumber: 2.0 Consensus size: 34
96237654 AGACTTTGAA
* * *
96237664 GAAGAAGAAGGAAGAAGAAGGAAAAAGAAAAGAG
1 GAAGAAGAAGAAAGAAAAAAGAAAAAGAAAAGAG
96237698 GAAGAAGAAAGAAAGAAAAAAGAAAAAGAAAAGA
1 GAAGAAG-AAGAAAGAAAAAAGAAAAAGAAAAGA
96237732 AATAATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 7 0.23
35 23 0.77
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (34 bp):
GAAGAAGAAGAAAGAAAAAAGAAAAAGAAAAGAG
Found at i:96237726 original size:24 final size:24
Alignment explanation
Indices: 96237675--96237727 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
96237665 AAGAAGAAGG
* **
96237675 AAGAAGAAGGAAAAAGAAAAGAGG
1 AAGAAGAAAGAAAAAGAAAAGAAA
96237699 AAGAAGAAAGAAAGAA-AAAAGAAA
1 AAGAAGAAAGAAA-AAGAAAAGAAA
96237723 AAGAA
1 AAGAA
96237728 AAGAAATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (24 bp):
AAGAAGAAAGAAAAAGAAAAGAAA
Found at i:96237830 original size:15 final size:14
Alignment explanation
Indices: 96237809--96237860 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 14
96237799 GCAGCCCAAG
96237809 AAAAAACAACAAAA
1 AAAAAACAACAAAA
*
96237823 ACAAAAACAAAAAAA
1 A-AAAAACAACAAAA
96237838 AAAGAAACAAGCCAAAA
1 AAA-AAACAA--CAAAA
96237855 AAAAAA
1 AAAAAA
96237861 AGAAGAGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 3 0.09
15 19 0.59
16 3 0.09
17 7 0.22
ACGTcount: A:0.83, C:0.13, G:0.04, T:0.00
Consensus pattern (14 bp):
AAAAAACAACAAAA
Found at i:96237845 original size:21 final size:20
Alignment explanation
Indices: 96237821--96237860 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
96237811 AAAACAACAA
96237821 AAACAAAAACAAAAAAAAAAG
1 AAAC-AAAACAAAAAAAAAAG
**
96237842 AAACAAGCCAAAAAAAAAA
1 AAACAAAACAAAAAAAAAA
96237861 AGAAGAGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.82, C:0.12, G:0.05, T:0.00
Consensus pattern (20 bp):
AAACAAAACAAAAAAAAAAG
Found at i:96238011 original size:11 final size:11
Alignment explanation
Indices: 96237995--96238064 Score: 77
Period size: 11 Copynumber: 6.3 Consensus size: 11
96237985 TTGGCCCAGC
96237995 AGAAAAAAAAA
1 AGAAAAAAAAA
*
96238006 AGAAAAGAAAA
1 AGAAAAAAAAA
* *
96238017 AGAAGAAAAAG
1 AGAAAAAAAAA
**
96238028 AGAAGGAAAAA
1 AGAAAAAAAAA
*
96238039 AGAAGGAAAAAA
1 AGAA-AAAAAAA
96238051 AGAAAAAAAAA
1 AGAAAAAAAAA
96238062 AGA
1 AGA
96238065 GGTTCAATTC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
11 40 0.80
12 10 0.20
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:96238022 original size:14 final size:14
Alignment explanation
Indices: 96237999--96238062 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 14
96237989 CCCAGCAGAA
96237999 AAAAAAAAGAAAAG
1 AAAAAAAAGAAAAG
*
96238013 AAAAAGAAGAAAAAG
1 AAAAAAAAG-AAAAG
*
96238028 AGAAGGAAAAA-AGAAG
1 A-AA--AAAAAGAAAAG
*
96238044 GAAAAAAAGAAAA-
1 AAAAAAAAGAAAAG
96238057 AAAAAA
1 AAAAAA
96238063 GAGGTTCAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 11
0.70 0.11 0.20
Matches are distributed among these distances:
13 10 0.26
14 11 0.28
15 8 0.21
16 6 0.15
18 4 0.10
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:96238224 original size:16 final size:17
Alignment explanation
Indices: 96238198--96238235 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
96238188 GCATATTTAT
96238198 ATTTTTAATTTAATTTG
1 ATTTTTAATTTAATTTG
* *
96238215 ATTTTT-ATTTTATTTT
1 ATTTTTAATTTAATTTG
96238231 ATTTT
1 ATTTT
96238236 AAATAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTTTAATTTAATTTG
Found at i:96238644 original size:19 final size:18
Alignment explanation
Indices: 96238622--96238730 Score: 86
Period size: 16 Copynumber: 6.2 Consensus size: 18
96238612 TCTATTTTCC
*
96238622 AAAATTTTTAGTGTCTTCTA
1 AAAATTTTT-GTGT-TTCAA
96238642 AAAATTTTTGTGTTTC-A
1 AAAATTTTTGTGTTTCAA
*
96238659 AAAATTTTCGT-TTTC-A
1 AAAATTTTTGTGTTTCAA
**
96238675 AAAATTTCCGTGTTTCAA
1 AAAATTTTTGTGTTTCAA
*
96238693 AAATTTTCTTGT-TTTC--
1 AAAATTT-TTGTGTTTCAA
*
96238709 AAAATTTTTCGTATTTCAA
1 AAAATTTTT-GTGTTTCAA
96238728 AAA
1 AAA
96238731 TCCTCTTGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 15
0.78 0.06 0.15
Matches are distributed among these distances:
15 2 0.03
16 23 0.30
17 19 0.25
18 14 0.18
19 9 0.12
20 9 0.12
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.49
Consensus pattern (18 bp):
AAAATTTTTGTGTTTCAA
Found at i:96238663 original size:17 final size:17
Alignment explanation
Indices: 96238617--96238783 Score: 126
Period size: 17 Copynumber: 9.5 Consensus size: 17
96238607 AAAAATCTAT
*
96238617 TTTCCAAAATTTTTAGTG
1 TTTCAAAAATTTTT-GTG
96238635 TCTTCTAAAAATTTTTGTG
1 T-TTC-AAAAATTTTTGTG
*
96238654 TTTCAAAAATTTTCGT-
1 TTTCAAAAATTTTTGTG
**
96238670 TTTCAAAAATTTCCGTG
1 TTTCAAAAATTTTTGTG
96238687 TTTCAAAAATTTTCT-TG
1 TTTCAAAAATTTT-TGTG
*
96238704 TTTTC-AAAATTTTTCGTA
1 -TTTCAAAAATTTTT-GTG
* *
96238722 TTTCAAAAATCCTCTTG-C
1 TTTCAAAAAT--TTTTGTG
**
96238740 TTTCAAAAATTTCGGTG
1 TTTCAAAAATTTTTGTG
* *
96238757 TTTTAAAAATTTTAGTG
1 TTTCAAAAATTTTTGTG
96238774 TTTTCAAAAA
1 -TTTCAAAAA
96238784 AAAAATCTCG
Statistics
Matches: 121, Mismatches: 16, Indels: 24
0.75 0.10 0.15
Matches are distributed among these distances:
16 18 0.15
17 51 0.42
18 32 0.26
19 8 0.07
20 12 0.10
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.48
Consensus pattern (17 bp):
TTTCAAAAATTTTTGTG
Found at i:96238726 original size:35 final size:35
Alignment explanation
Indices: 96238642--96238782 Score: 155
Period size: 35 Copynumber: 4.1 Consensus size: 35
96238632 GTGTCTTCTA
96238642 AAAATTTTT-GTGTTTCAAAAATTTTC--GTTTTC
1 AAAATTTTTCGTGTTTCAAAAATTTTCTTGTTTTC
* *
96238674 AAAAATTTCCGTGTTTCAAAAATTTTCTTGTTTTC
1 AAAATTTTTCGTGTTTCAAAAATTTTCTTGTTTTC
* ** *
96238709 AAAATTTTTCGTATTTCAAAAATCCTCTTGCTTTC
1 AAAATTTTTCGTGTTTCAAAAATTTTCTTGTTTTC
* * **
96238744 AAAA-ATTTCGGTGTTTTAAAAATTTTAGTGTTTTC
1 AAAATTTTTC-GTGTTTCAAAAATTTTCTTGTTTTC
96238779 AAAA
1 AAAA
96238783 AAAAAATCTC
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
32 7 0.08
33 17 0.19
34 4 0.04
35 61 0.69
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.48
Consensus pattern (35 bp):
AAAATTTTTCGTGTTTCAAAAATTTTCTTGTTTTC
Found at i:96238783 original size:35 final size:34
Alignment explanation
Indices: 96238621--96238783 Score: 141
Period size: 35 Copynumber: 4.7 Consensus size: 34
96238611 ATCTATTTTC
* * *
96238621 CAAAATTTTTAGTGTCTTCTAAAAATTTTTGTGTTT
1 CAAAAATTTTAGTGTTTTC-AAAAA-TTTCGTGTTT
*
96238657 CAAAAATTTT--CGTTTTCAAAAATTTCCGTGTTT
1 CAAAAATTTTAGTGTTTTCAAAAATTT-CGTGTTT
** * *
96238690 CAAAAATTTTCTTGTTTTCAAAATTTTTCGTATTT
1 CAAAAATTTTAGTGTTTTCAAAA-ATTTCGTGTTT
** ** *
96238725 CAAAAATCCTCTTGCTTTCAAAAATTTCGGTGTTT
1 CAAAAATTTTAGTGTTTTCAAAAATTTC-GTGTTT
*
96238760 TAAAAATTTTAGTGTTTTCAAAAA
1 CAAAAATTTTAGTGTTTTCAAAAA
96238784 AAAAATCTCG
Statistics
Matches: 104, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
32 3 0.03
33 21 0.20
34 9 0.09
35 59 0.57
36 12 0.12
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.47
Consensus pattern (34 bp):
CAAAAATTTTAGTGTTTTCAAAAATTTCGTGTTT
Found at i:96238798 original size:39 final size:38
Alignment explanation
Indices: 96238744--96238872 Score: 106
Period size: 39 Copynumber: 3.4 Consensus size: 38
96238734 TCTTGCTTTC
*
96238744 AAAAATTTCGGTGTTTTAAAAATTTTAGTGTTTTCAAAAA
1 AAAAATCTC-GTGTTTTAAAAATTTT-GTGTTTTCAAAAA
* *
96238784 AAAAATCTCGTGTTTCATAAATTTTG-GTTTT-AAAAA
1 AAAAATCTCGTGTTTTAAAAATTTTGTGTTTTCAAAAA
* * * *
96238820 AAATAT-T-ATGTCTT-AAAATTCTCGTGTTTTCAAAACA
1 AAAAATCTCGTGTTTTAAAAATT-TTGTGTTTTCAAAA-A
*
96238857 AGAAATTCTCGTGTTT
1 A-AAAATCTCGTGTTT
96238873 CAATCGGATC
Statistics
Matches: 69, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
33 5 0.07
34 6 0.09
35 6 0.09
36 14 0.20
37 7 0.10
38 4 0.06
39 15 0.22
40 12 0.17
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.42
Consensus pattern (38 bp):
AAAAATCTCGTGTTTTAAAAATTTTGTGTTTTCAAAAA
Found at i:96250670 original size:69 final size:69
Alignment explanation
Indices: 96250503--96250678 Score: 203
Period size: 71 Copynumber: 2.5 Consensus size: 69
96250493 TTTATGTTTG
* **
96250503 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGGAGGTATTTTTAATTTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTCCGAGGTATTTTTAATTTT
96250568 TTTT
66 TTTT
** * *
96250572 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACG-CCGAGGTATTTTTAGTT
1 --AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTCCGAGGTATTTTTAATT
96250636 TATGTTTT
64 T-T-TTTT
** * *
96250644 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
96250679 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
69 31 0.34
70 15 0.16
71 42 0.46
72 4 0.04
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTCCGAGGTATTTTTAATTTT
TTTT
Found at i:96250786 original size:123 final size:120
Alignment explanation
Indices: 96250558--96250801 Score: 294
Period size: 123 Copynumber: 2.0 Consensus size: 120
96250548 TTGGAGGTAT
* ** *
96250558 TTTTAATTTTTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGA
1 TTTTAATTTTTTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGA
* ** ** *
96250623 GGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
66 GGTATTTTTAATTTATGTTAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCC
** *
96250678 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCAGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTTAA-TTTT-TTTTAAAAAATCAACTCATATTGC-GAGAAATGAGTTGAGCCTCAAGACACGC
* *
96250743 TGAGGTATTTTTAATTT-T-TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC
63 CGAGGTATTTTTAATTTATGTT--AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCC
96250801 T
1 T
96250802 CGGGGCACGC
Statistics
Matches: 104, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
120 6 0.06
121 6 0.06
122 23 0.22
123 69 0.66
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (120 bp):
TTTTAATTTTTTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGA
GGTATTTTTAATTTATGTTAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCC
Found at i:96250828 original size:193 final size:192
Alignment explanation
Indices: 96250442--96252077 Score: 2827
Period size: 192 Copynumber: 8.5 Consensus size: 192
96250432 AGGATTTCTG
* ** * * ** * *
96250442 GTTTATGTTGTATTTTGACTCGTATTGCGAGAGGTGAGTTCATG-CTTTCCATTTATG--TTTGA
1 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTTTTGTTTTTCA
*
96250504 AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGGAGGTATTTTTAATTTTT
65 AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT-GAGGTATTTTTAAATTTT
*
96250569 TTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
129 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
96250633 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
1 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
96250698 AATCAACTCATATTGCAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT-AATTTTT
66 AATCAACTCATATTGC-GAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTT
96250762 TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAAGGTATTTTTA
130 TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCG-AGGTATTTTTA
96250826 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
1 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
96250891 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
66 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTTTT
96250956 TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
130 TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
96251019 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG-TTTTCAA
1 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
96251083 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGACACGTTGAGGTATTTTTAAATTTTTT
66 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
*
96251147 ATAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
131 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
96251209 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTT-TTTTTCAA
1 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC-A
*
96251273 AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTATATTTTT
65 AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTT
*
96251338 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTA-TTTTA
130 T-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
*
96251401 GTTTATGTTTTAAATTGACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
1 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
* *
96251466 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGATGTATTTTTAAATTTTTT
66 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTTTT
*
96251531 TTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTTA
130 TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTA-TTTTTA
*
96251595 GTTTTTGTTTTTAAATTGAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTT
1 GTTTATG-TTTTAAATTG-ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG-TTTTT
*
96251660 CAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTC-AGACACGTTGAGGTATTTTTAAATTT
63 CAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT
*
96251724 TTAAAAAAAATCAACTCATA-TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTC
128 TTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT-
96251788 A
192 A
96251789 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG-TTTTCAA
1 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
96251853 AATCAACTCATTATTTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTATTTTTAAATTTT
66 AATCAACTCA-TA-TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
96251917 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG-CTCGGGGCACGCCGAGGTATTTTTA
129 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
96251980 GTTTATG--TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG-TTTTCAA
1 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC-A
96252042 AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
65 AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
96252078 GGGGCACGCC
Statistics
Matches: 1390, Mismatches: 31, Indels: 51
0.94 0.02 0.03
Matches are distributed among these distances:
188 23 0.02
189 55 0.04
190 159 0.11
191 116 0.08
192 462 0.33
193 300 0.22
194 142 0.10
195 31 0.02
196 61 0.04
197 41 0.03
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (192 bp):
GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT
AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
Found at i:96251161 original size:121 final size:121
Alignment explanation
Indices: 96250960--96251185 Score: 305
Period size: 121 Copynumber: 1.9 Consensus size: 121
96250950 TTTTTTTAAA
* * * *
96250960 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGAGACACGCCGAGGTATTTTTAATTTAT
* ** *
96251025 GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTC
66 GTTTAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTC
**
96251081 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGACACGTTGAGGTATTTTTAAATTT-
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGAGACACGCCGAGGTATTTTT-AATTTA
*
96251144 T-TTATAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
65 TGTT-T-AAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCT
96251186 CGGGGCACGC
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
119 2 0.02
120 18 0.20
121 71 0.78
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (121 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGAGACACGCCGAGGTATTTTTAATTTAT
GTTTAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTC
Found at i:96251488 original size:121 final size:122
Alignment explanation
Indices: 96251343--96251951 Score: 319
Period size: 121 Copynumber: 4.8 Consensus size: 122
96251333 TTTTTTAAAA
** * *
96251343 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTA-TTTT-AGTTTA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTT-
**
96251406 TGTTTT-AAATTGACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
65 T-TTTTAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* *
96251464 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGATGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTTT
* **
96251529 TTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTT
66 TTTT--AAAATCAACTCATATTGCGAGAAGTGAGTT-A----------A-GCC----TTTTAA--
96251594 AGTTTTTGTTTTT-
111 --TTTTTGTTTTTC
* * * ** * *
96251607 AAATTGAACTCATATTGCGAG-A--G-G-TGAG--TTAAG-C-CTTTTA---ATTTTT---GTTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTTT
* * * * * *
96251657 TTTCAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTTTAAAT
66 TTTTAAAATCAACTCATATTGCGAGAAGTGAGTT-A-----AG-C-CTTTTA---ATTTTT--GT
*
96251722 TTTTAAAA
118 TTTT---C
** * * * *
96251730 AAAATCAACTCATA-TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTCAGTTTA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTT-
** *
96251794 TGTTTT-AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG-TTTTC
65 T-TTTTAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
*
96251851 AAAATCAACTCATTATTTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTATTTTTAAATT
1 AAAATCAACTCA-TA-TTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATT
**
96251915 TTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
64 TTTT-TTAAAATCAACTCATATTGCGAGAAGTGAGTT
96251952 GAGCTCGGGG
Statistics
Matches: 369, Mismatches: 61, Indels: 114
0.68 0.11 0.21
Matches are distributed among these distances:
117 5 0.01
118 1 0.00
119 5 0.01
120 1 0.00
121 70 0.19
122 15 0.04
123 58 0.16
124 57 0.15
125 2 0.01
126 31 0.08
127 10 0.03
128 6 0.02
129 2 0.01
130 5 0.01
131 9 0.02
132 2 0.01
134 10 0.03
135 2 0.01
136 7 0.02
137 3 0.01
138 29 0.08
139 4 0.01
140 4 0.01
142 1 0.00
143 19 0.05
144 11 0.03
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.36
Consensus pattern (122 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTTT
TTTTAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:96251589 original size:71 final size:69
Alignment explanation
Indices: 96251458--96251834 Score: 252
Period size: 71 Copynumber: 5.6 Consensus size: 69
96251448 TTAATTTTTG
* ** *
96251458 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGATGTATTTTTA
1 TTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-AGACACGCCGAGGTATTTTTA
96251523 AATTT
65 AATTT
* *
96251528 TTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
1 TTTTT-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-AGACACGCCGAGGTA-TTTT
**
96251593 TAGTTTT
63 TAAATTT
* * * * * ***
96251600 TGTTTTTAAATTGAACTCATATTGCGAGAGGTGAGTTAAGCCT--TTTA-----A--T-TTTTGT
1 T-TTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGACACGCCGAGGTATTTT-T
96251655 ---TTT
64 AAATTT
* * * **
96251658 TTC---AAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTTTAA
1 TTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGACACGCCGAGGTATTTTTAA
96251720 ATTT
66 ATTT
*** * * *
96251724 TTAAAAAAAATCAACTCATA-TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTC
1 TTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-AGACACGCCGAGGTATTTTTA
*
96251788 AGTTT
65 AATTT
** * *
96251793 ATGTTTT--AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 -T-TTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
96251835 TTTAATTTTT
Statistics
Matches: 240, Mismatches: 43, Indels: 48
0.73 0.13 0.15
Matches are distributed among these distances:
54 30 0.12
56 1 0.00
57 1 0.00
58 4 0.02
60 4 0.02
61 2 0.01
62 1 0.00
63 2 0.01
64 5 0.02
66 5 0.02
68 20 0.08
69 46 0.19
70 25 0.10
71 48 0.20
72 42 0.17
73 4 0.02
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (69 bp):
TTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGACACGCCGAGGTATTTTTAA
ATTT
Found at i:96251689 original size:54 final size:52
Alignment explanation
Indices: 96251590--96251696 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 52
96251580 CCGAGGTATT
* * * * **
96251590 TTTTAGTTTTTGTTTTTAAATTGAACTCATATTGCGAGAGGTGAGTTAAGCC
1 TTTTAATTTTTGTTTTTAAAATCAACTCATATTGCAAGAAATGAGTTAAGCC
*
96251642 TTTTAATTTTTGTTTTTTCAAAATCAACTCATATTGCAAGAAATGAGTTGAGCC
1 TTTTAATTTTTG-TTTTT-AAAATCAACTCATATTGCAAGAAATGAGTTAAGCC
96251696 T
1 T
96251697 CAGACACGTT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
52 11 0.24
53 5 0.11
54 30 0.65
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.44
Consensus pattern (52 bp):
TTTTAATTTTTGTTTTTAAAATCAACTCATATTGCAAGAAATGAGTTAAGCC
Found at i:96251993 original size:769 final size:768
Alignment explanation
Indices: 96250442--96252077 Score: 2866
Period size: 769 Copynumber: 2.1 Consensus size: 768
96250432 AGGATTTCTG
** * * ** * * *
96250442 GTTTATGTTGTATTTTGACTCGTATTGCGAGAGGTGAGTTCATG-CTTTCCA-TTTATGTTT-GA
1 GTTTATGTT-TAAATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTTTTTTTTTCAA
96250504 AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGGAGGTATTTTTAATTTTT
64 AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGGAGGTATTTTTAATTTTT
**
96250569 TTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
129 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
*
96250634 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
194 TTTATGTTTTAAATTGACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
96250699 ATCAACTCATATTGCAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTTA
259 ATCAACTCATATTGCAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTTA
96250764 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAAGGTATTTTTAGTT
324 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAAGGTATTTTTAGTT
96250829 TATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAT
389 TATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAT
* *
96250894 CAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTTAA
454 CAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAA
96250959 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
519 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
96251024 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAATCAA
584 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAATCAA
*
96251089 CTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTTTAAATTTTTTATAAAAA
649 CTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAA
96251154 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
714 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
96251209 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTTTTTTCAAA
1 GTTTATG-TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTTTTTTCAAA
96251274 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT-GAGGTATTTTTATATTTTT
65 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGGAGGTATTTTTA-ATTTTT
*
96251338 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTA-TTTTAG
129 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
96251402 TTTATGTTTTAAATTGACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
194 TTTATGTTTTAAATTGACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
* *
96251467 ATCAACTCATATTGC-GAGAAGTGAGTTGAGCCTCAAGACACGTTGATGTATTTTTAAATTTTTT
259 ATCAACTCATATTGCAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT-AA-TTTTT
*
96251531 TTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCG-AGGTATTTTTTA
322 TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAAGGTA-TTTTTA
*
96251595 GTTTTTGTTTTTAAATTGAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTT
386 GTTTATG-TTTTAAATTG-ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG-TTTTT
96251660 CAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTC-AGACACGTTGAGGTATTTTTAAA-TT
448 CAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT
96251723 TTTAAAAAAAATCAACTCATA-TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
513 TTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
96251787 CAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCA
578 -AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCA
96251852 AAATCAACTCATTATTTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTATTTTTAAATTT
642 AAATCAACTCA-TA-TTGCGAGAAATGAGTTGAGCCTC-AGACACGTTGAGGTATTTTTAAATTT
96251916 TTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG-CTCGGGGCACGCCGAGGTATTTTTA
704 TTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
*
96251980 GTTTATG-TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAA
1 GTTTATGTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTTTTTTCAAAA
96252044 ATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
66 ATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
96252078 GGGGCACGCC
Statistics
Matches: 833, Mismatches: 21, Indels: 28
0.94 0.02 0.03
Matches are distributed among these distances:
766 2 0.00
767 77 0.09
768 113 0.14
769 309 0.37
770 107 0.13
771 97 0.12
772 121 0.15
773 7 0.01
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (768 bp):
GTTTATGTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTTTTTTCAAAA
ATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGGAGGTATTTTTAATTTTTTA
AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTT
TATGTTTTAAATTGACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAT
CAACTCATATTGCAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTTAAA
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAAGGTATTTTTAGTTTA
TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCA
ACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAA
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATG
TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAATCAACT
CATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATC
AACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
Found at i:96252061 original size:119 final size:118
Alignment explanation
Indices: 96251921--96252192 Score: 494
Period size: 119 Copynumber: 2.3 Consensus size: 118
96251911 AATTTTTTAA
*
96251921 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCTCGGGGCACGCCGAGGTA-TTTTAGTTTAT
96251986 G-TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTC
65 GTTTAAATTGAC-CATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTC
96252040 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTAGTTTAT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAG-CTCGGGGCACGCCGAGGTATTTTAGTTTAT
96252105 GTTTAAATTGACCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTC
65 GTTTAAATTGACCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTC
96252159 -AAAATCAACTCATATTGCGAGAAATGAGTTGAGC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
96252193 CTCAAGACAC
Statistics
Matches: 150, Mismatches: 1, Indels: 6
0.96 0.01 0.04
Matches are distributed among these distances:
117 1 0.01
118 33 0.22
119 87 0.58
120 29 0.19
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (118 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCTCGGGGCACGCCGAGGTATTTTAGTTTATG
TTTAAATTGACCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTC
Found at i:96252244 original size:306 final size:312
Alignment explanation
Indices: 96251729--96252383 Score: 1186
Period size: 306 Copynumber: 2.1 Consensus size: 312
96251719 AATTTTTAAA
*
96251729 AAAAATCAACTCATATGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTCAGTTTA
1 AAAAATCAACTCATATGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTCAGTTTA
96251794 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAATCAA
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAATCAA
96251859 CTCATTATTTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTTAAATTTTTTAAAAA
131 CTCATTATTTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTTAAATTTTTTAAAAA
*
96251924 AATCAACTCATATTGCGAGAAGTGAGTTGAGCTCGGGGCACGCCGAGGTATTTTTAGTTTATG-T
196 AATCAACTCATATTGCGAGAAGTGAGTTGACCTCGGGGCACGCCGAGGTA-TTTTAGTTTATGTT
96251988 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG-TTTTC
260 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
96252040 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTA-TTTT-AGTTT
1 AAAAATCAACTCATA-TGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTCAGTTT
96252103 ATG-TTTAAATTGAC-CATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAATCA
65 ATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAATCA
96252166 ACTCA-TA-TTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTA-TTTTAAATTTTTTAAAA
130 ACTCATTATTTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTTAAATTTTTT-AAA
96252228 AAAATCAACTCATATTGCGAGAAGTGAGTTGACCTCGGGGCACGCCGAGGTATTTTAGTTTATGT
194 AAAATCAACTCATATTGCGAGAAGTGAGTTGACCTCGGGGCACGCCGAGGTATTTTAGTTTATG-
96252293 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
258 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
96252348 -AAAATCAACTCATATGCGAGAAATGAGTTGAGCCTC
1 AAAAATCAACTCATATGCGAGAAATGAGTTGAGCCTC
96252384 AAGACACGTT
Statistics
Matches: 337, Mismatches: 2, Indels: 15
0.95 0.01 0.04
Matches are distributed among these distances:
305 25 0.07
306 114 0.34
307 64 0.19
308 59 0.18
309 11 0.03
310 8 0.02
311 19 0.06
312 37 0.11
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.35
Consensus pattern (312 bp):
AAAAATCAACTCATATGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTCAGTTTA
TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAATCAA
CTCATTATTTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTTAAATTTTTTAAAAA
AATCAACTCATATTGCGAGAAGTGAGTTGACCTCGGGGCACGCCGAGGTATTTTAGTTTATGTTT
AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:96252486 original size:70 final size:68
Alignment explanation
Indices: 96252342--96252519 Score: 177
Period size: 66 Copynumber: 2.6 Consensus size: 68
96252332 TTAATTTTTG
* * **
96252342 TTTTTCAAAATCAACTCATA-TGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTA
1 TTTTTTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTA
96252406 AAT
66 AAT
* *
96252409 TTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCCGAGGTA-TT
1 TTTTTT---AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTT
*
96252472 TT-AGT
63 TTAAAT
** * *
96252477 TTATGTTT-AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TT-T-TTTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
96252520 TTTAATTTTT
Statistics
Matches: 94, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
66 31 0.33
67 5 0.05
68 4 0.04
69 5 0.05
70 28 0.30
71 21 0.22
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (68 bp):
TTTTTTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTA
AAT
Found at i:96252489 original size:496 final size:502
Alignment explanation
Indices: 96251518--96252572 Score: 1820
Period size: 496 Copynumber: 2.1 Consensus size: 502
96251508 GTTGATGTAT
* * *
96251518 TTTTAAATTTT-TTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCC
1 TTTTAATTTTTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCC
*
96251582 GAGGTATTTTTTAGTTTTTGTTTTTAAATTGAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTA
66 GAGGTA-TTTTTAGTTTATG-TTTTAAATTGAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTA
96251647 ATTTTTGTTTTTTCAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAGACACGTTGAGGT
129 ATTTTTG-TTTTTCAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAGACACGTTGAGGT
96251712 ATTTTTAAATTTTTAAAAAAAATCAACTCATATGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCG
193 ATTTTTAAATTTTTAAAAAAAATCAACTCATATGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCG
96251777 AGGTATTTTTCAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATT
258 AGGTATTTTTCAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATT
96251842 TTTGTTTTCAAAATCAACTCATTATTTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATT
323 TTTGTTTTCAAAATCAACTCATTA-TTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATT
96251907 TTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTCGGGGCACGCCGAGG
387 TTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTCGGGGCACGCCGAGG
96251972 TATTTTTAGTTTATGTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
452 TATTTTTAGTTTATGTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
96252023 TTTTAATTTTTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCC
1 TTTTAATTTTTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCC
96252088 GAGGTA-TTTTAGTTTATG-TTTAAATTG-AC-CATATTGCGAGAGGTGAGTTAAGCCTTTTAAT
66 GAGGTATTTTTAGTTTATGTTTTAAATTGAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAAT
*
96252149 TTTTG-TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTA-
131 TTTTGTTTTTCAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTC-AGACACGTTGAGGTAT
96252211 TTTTAAATTTTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGA-CCTCGGGGCACGCCG
195 TTTTAAA-TTTTTAAAAAAAATCAACTCATA-TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCG
96252275 AGGTA-TTTT-AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATT
258 AGGTATTTTTCAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATT
96252338 TTTGTTTTTCAAAATCAACTCA-TA-TGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
323 TTTG-TTTTCAAAATCAACTCATTATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTAT
96252401 TTTTAAATTTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCCG
386 TTTTAAA-TTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG-CTCGGGGCACGCCG
96252465 AGGTA-TTTTAGTTTATGTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
449 AGGTATTTTTAGTTTATG-TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
*
96252519 TTTTAATTTTTGTTTTTC--AAATCAACTCATATTGCAAGAAATGAGTTGAGCCTC
1 TTTTAATTTTTG-TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
96252573 AAGACACGTT
Statistics
Matches: 534, Mismatches: 6, Indels: 30
0.94 0.01 0.05
Matches are distributed among these distances:
494 30 0.06
495 62 0.12
496 165 0.31
497 36 0.07
498 91 0.17
499 24 0.04
500 37 0.07
501 2 0.00
502 9 0.02
504 11 0.02
505 10 0.02
506 57 0.11
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (502 bp):
TTTTAATTTTTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCC
GAGGTATTTTTAGTTTATGTTTTAAATTGAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAAT
TTTTGTTTTTCAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATT
TTTAAATTTTTAAAAAAAATCAACTCATATGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGG
TATTTTTCAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTT
GTTTTCAAAATCAACTCATTATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTTA
AATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTCGGGGCACGCCGAGGTATT
TTTAGTTTATGTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:96252822 original size:118 final size:118
Alignment explanation
Indices: 96252608--96252824 Score: 276
Period size: 118 Copynumber: 1.8 Consensus size: 118
96252598 TTTTTTAAAA
* ** * *
96252608 AAAATCAACTCATATGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATG
1 AAAATCAACTCATATGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTATG
**** ** *
96252673 TTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAGCTTTTAATTTTGTTTTC
66 TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTAGCTTTTAATTTTGTTTTC
**
96252726 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT-
1 AAAATCAACTCATA-TGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT-AATTTA
96252790 T-TAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
64 TGTAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
96252825 GAGCCTCGGG
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
118 41 0.49
119 38 0.46
120 4 0.05
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.34
Consensus pattern (118 bp):
AAAATCAACTCATATGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTATG
TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTAGCTTTTAATTTTGTTTTC
Found at i:96253737 original size:769 final size:768
Alignment explanation
Indices: 96252040--96254491 Score: 4638
Period size: 769 Copynumber: 3.2 Consensus size: 768
96252030 TTTTGTTTTC
*
96252040 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTA-TTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
96252104 TGTTTAAATTGAC-CATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG-TTTTCAAAATCAA
66 TGTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAA
96252167 CTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTA-TTTTAAATTTTTTAAAAAA
131 CTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT-AAAAA
96252230 AATCAACTCATATTGCGAGAAGTGAGTTGA-CCTCGGGGCACGCCGAGGTA-TTTTAGTTTATGT
195 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGT
96252293 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
260 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
96252358 CATA-TGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTTAAAAAAA
325 CATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTTAAAAAAA
96252422 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCCGAGGTA-TTTTAGTTTATG-TT
390 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTT
96252484 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC-AAATCAACTCA
455 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCA
*
96252548 TATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGGTATTTTTAAATTTTTTAAAAAAAAT
520 TATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA-GGTATTTTTAAATTTTTT-AAAAAAAT
96252613 CAACTCATA-TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTT
583 CAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATG-TTT
96252677 TAAATTGACTCATATTGCGAGAGGTGAGTT-AG-CTTTTAA-TTTTG-TTTTCAAAATCAACTCA
647 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCA
96252738 TATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTTTTAA
712 TATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAA
96252794 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
96252859 TGTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAA
66 TGTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAA
96252924 CTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAA
131 CTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAA
96252989 ATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTT
196 ATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTT
96253054 TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTC
261 TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTC
* *
96253119 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTATATTTTTTAAAAAAAAT
326 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTTAAAAAAAT
96253184 CAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTT
391 CAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTT
96253249 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCC-TTTAATTTTTGTTTTTCAAAATCAACTCAT
456 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCAT
96253313 ATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAA
521 ATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAA
96253378 CTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAA
586 CTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAA
96253443 TTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATT
651 TTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATT
*
96253508 GCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAA
716 GCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTT-AA
96253562 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
96253627 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCA
66 TG-TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCA
96253692 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAA
130 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAA
96253757 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGT
195 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGT
96253822 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
260 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
96253887 CATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTTTAAAAAA
325 CATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTTTTTTAAAAAA
96253952 ATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTT
389 ATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTT
96254017 TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTC
454 TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTC
96254082 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATC
519 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATC
96254147 AACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTA
584 AACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTA
96254212 AATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATA
649 AATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATA
96254277 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTTAAATTTTTTAA
714 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAA
96254331 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
96254396 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATC
66 TG-TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC-AAAATC
96254461 AACTCATATTGCGAGAAATGAGTTGAGCCTC
129 AACTCATATTGCGAGAAATGAGTTGAGCCTC
96254492 GGGGCACGCC
Statistics
Matches: 1667, Mismatches: 8, Indels: 30
0.98 0.00 0.02
Matches are distributed among these distances:
754 53 0.03
755 23 0.01
756 37 0.02
757 50 0.03
758 42 0.03
759 33 0.02
760 82 0.05
761 91 0.05
762 65 0.04
763 100 0.06
764 91 0.05
765 5 0.00
766 65 0.04
767 5 0.00
768 69 0.04
769 432 0.26
770 163 0.10
771 261 0.16
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (768 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
TGTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAA
CTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAA
ATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTT
TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTC
ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTTAAAAAAAT
CAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTT
AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCAT
ATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAA
CTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAA
TTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATT
GCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTTAA
Found at i:96254359 original size:122 final size:122
Alignment explanation
Indices: 96254141--96254367 Score: 296
Period size: 122 Copynumber: 1.9 Consensus size: 122
96254131 ATTTTTTAAA
* ** * * *
96254141 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTAAATTTAT
** ** *
96254206 GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 GTTAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
**
96254263 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTAAATTT-T
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTAAATTTAT
*
96254327 -TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
66 GTT--AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCT
96254368 CGGGGCACGC
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
120 2 0.02
121 1 0.01
122 86 0.97
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (122 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTAAATTTAT
GTTAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:96254472 original size:54 final size:54
Alignment explanation
Indices: 96254408--96254613 Score: 160
Period size: 54 Copynumber: 3.5 Consensus size: 54
96254398 TTTTAAATTG
96254408 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
** * *** ***
96254462 ACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA---ATTTTT-GTTT-T-TCAAAA
**
96254527 ATTG
51 ATCA
96254531 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
* *
96254585 ACTCATATTGCAAGAGGTGAGTTGAGCCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT
96254614 CGGCTCACAT
Statistics
Matches: 113, Mismatches: 24, Indels: 30
0.68 0.14 0.18
Matches are distributed among these distances:
54 58 0.51
55 1 0.01
56 4 0.04
57 6 0.05
60 1 0.01
63 1 0.01
66 6 0.05
67 4 0.04
68 1 0.01
69 31 0.27
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (54 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
Found at i:96254475 original size:123 final size:123
Alignment explanation
Indices: 96254331--96254649 Score: 548
Period size: 123 Copynumber: 2.6 Consensus size: 123
96254321 AATTTTTTAA
96254331 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
96254396 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
*
96254454 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
96254519 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* * ** * * *
96254577 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCAC--GCCGAGGTATTTTTAGTT
96254642 TATGTTTT
64 TATGTTTT
96254650 TTTCAATCTA
Statistics
Matches: 185, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
123 162 0.88
125 23 0.12
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (123 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Done.