Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 295 of 343
Found at i:96949306 original size:44 final size:43
Alignment explanation
Indices: 96949256--96949746 Score: 360
Period size: 44 Copynumber: 11.0 Consensus size: 43
96949246 GGGTATAGGA
* *
96949256 TTGTAGCTTTATCTTGCTCCATTGCAACTTCAAGAAGATAAGAT
1 TTGTAGCTTAATC-TGCTCCACTGCAACTTCAAGAAGATAAGAT
* *
96949300 TTGTAGCTTTATCTTGCTCCACTGCAACTTCGAGAAGATAAGAT
1 TTGTAGCTTAATC-TGCTCCACTGCAACTTCAAGAAGATAAGAT
* * **
96949344 TGGTAGCTTCAATCTGCTTCACTGCAACTTCAAGGTGATAAGAT
1 TTGTAGCTT-AATCTGCTCCACTGCAACTTCAAGAAGATAAGAT
* * * * *
96949388 TCGTAGCTTCAATCTGCTTCACTACAACTTTAGGAAGATAAGAT
1 TTGTAGCTT-AATCTGCTCCACTGCAACTTCAAGAAGATAAGAT
* * * * *
96949432 TTGTAGTTTCAATCTGCTCTACTGCAACTTCAGGGAGATGAGAT
1 TTGTAGCTT-AATCTGCTCCACTGCAACTTCAAGAAGATAAGAT
* * **
96949476 TTGTAACTTCAATCTGCTCCACTACAA-TTTTAGAGAGATAAGAT
1 TTGTAGCTT-AATCTGCTCCACTGCAACTTCAAGA-AGATAAGAT
* * * * *
96949520 TTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGT
1 TTGTAGCTTAATC-TGCTCCACTGCAACTTCAAGAAGATAAGA----T
* * * * * **
96949568 TATGGTAGATTCAATCCGAC-CCACTACATCTT-TAGGGGTATAAGAT
1 T-T-GTAGCTT-AATCTG-CTCCACTGCAACTTCAAGAAG-ATAAGAT
* * ** *
96949614 TTTTAGCATCAATCTATTTCACTGCAACTTC-AGAGAGATAAGAT
1 TTGTAGC-TTAATCTGCTCCACTGCAACTTCAAGA-AGATAAGAT
* * * *
96949658 TTGTAGCTTTAATTTGCTCCACTGCAATTTTAAGGAGATAAGAT
1 TTGTAGC-TTAATCTGCTCCACTGCAACTTCAAGAAGATAAGAT
* *
96949702 TTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
1 TTGTAGCTT-AATCTGCTCCACTGCAACTTCAAGAAGATAAGAT
96949746 T
1 T
96949747 CTTTATGGTA
Statistics
Matches: 360, Mismatches: 68, Indels: 38
0.77 0.15 0.08
Matches are distributed among these distances:
43 8 0.02
44 304 0.84
45 12 0.03
46 2 0.01
48 2 0.01
49 4 0.01
50 24 0.07
51 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (43 bp):
TTGTAGCTTAATCTGCTCCACTGCAACTTCAAGAAGATAAGAT
Found at i:96949370 original size:88 final size:87
Alignment explanation
Indices: 96949256--96949746 Score: 463
Period size: 88 Copynumber: 5.5 Consensus size: 87
96949246 GGGTATAGGA
* * * * *
96949256 TTGTAGCTT-TATCTTGCTCCATTGCAACTTCAAGAAGATAAGATTTGTAGCTT-TATCTTGCTC
1 TTGTAGCTTCAATC-TGCTTCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATC-TGCTC
* *
96949319 CACTGCAACTTCGAGAAGATAAGAT
64 CACTACAACTT-TAGAAGATAAGAT
* * * *
96949344 TGGTAGCTTCAATCTGCTTCACTGCAACTTCAAGGTGATAAGATTCGTAGCTTCAATCTGCTTCA
1 TTGTAGCTTCAATCTGCTTCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCA
96949409 CTACAACTTTAGGAAGATAAGAT
66 CTACAACTTTA-GAAGATAAGAT
* * * *
96949432 TTGTAGTTTCAATCTGC-TCTACTGCAACTTCAGGGAGATGAGATTTGTAACTTCAATCTGCTCC
1 TTGTAGCTTCAATCTGCTTC-ACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCC
*
96949496 ACTACAATTTTAGAGAGATAAGAT
65 ACTACAACTTTAGA-AGATAAGAT
* * * * *
96949520 TTGTAGCTTC-ATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGTTATGGTAGATTCAATC
1 TTGTAGCTTCAATC-TGCTTCACTGCAACTTCAAGGAGATAAGA----TT-T-GTAGCTTCAATC
* * **
96949584 CGAC-CCACTACATCTTTAGGGGTATAAGAT
59 TG-CTCCACTACAACTTTAGAAG-ATAAGAT
* * ** * *
96949614 TTTTAGCATCAATCTATTTCACTGCAACTTC-AGAGAGATAAGATTTGTAGCTTTAATTTGCTCC
1 TTGTAGCTTCAATCTGCTTCACTGCAACTTCAAG-GAGATAAGATTTGTAGCTTCAATCTGCTCC
* * *
96949678 ACTGCAATTTTAAGGAGATAAGAT
65 ACTACAACTTT-AGAAGATAAGAT
* *
96949702 TTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TTGTAGCTTCAATCTGCTTCACTGCAACTTCAAGGAGATAAGATT
96949747 CTTTATGGTA
Statistics
Matches: 329, Mismatches: 54, Indels: 40
0.78 0.13 0.09
Matches are distributed among these distances:
87 9 0.03
88 236 0.72
89 13 0.04
90 2 0.01
92 2 0.01
93 3 0.01
94 60 0.18
95 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (87 bp):
TTGTAGCTTCAATCTGCTTCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCA
CTACAACTTTAGAAGATAAGAT
Found at i:96949436 original size:132 final size:131
Alignment explanation
Indices: 96949161--96949746 Score: 467
Period size: 132 Copynumber: 4.4 Consensus size: 131
96949151 AAGGGTATAG
*
96949161 GATTTGTAGCTTTATCTTGCTCCACTGCAACTTCAGAAGATAAGATTTGCTATAGTAAG-TTCAA
1 GATTTGTAGCTTTATC-TGCTCCACTGCAACTTCAGGAGATAAGA-TTG-----GT-AGCTTCAA
* * * * * * *
96949225 TCCAAC-CCACTGTAACTTCAG-GGGTATAGGA-TTGTAGCTT-TATCTTGCTCCATTGCAACTT
58 T-CTACTCCACTGCAACTTCAGAGAG-ATAAGATTTGTAGCTTCAATCTTGCTCCACTACAACTT
* *
96949286 CAAGAAGATAA
121 TAGGAAGATAA
* *
96949297 GATTTGTAGCTTTATCTTGCTCCACTGCAACTTCGAGAAGATAAGATTGGTAGCTTCAATCTGCT
1 GATTTGTAGCTTTATC-TGCTCCACTGCAACTTC-AGGAGATAAGATTGGTAGCTTCAATCTACT
* * * *
96949362 TCACTGCAACTTCA-AGGTGATAAGATTCGTAGCTTCAATC-TGCTTCACTACAACTTTAGGAAG
64 CCACTGCAACTTCAGA-GAGATAAGATTTGTAGCTTCAATCTTGCTCCACTACAACTTTAGGAAG
96949425 ATAA
128 ATAA
* * * * *
96949429 GATTTGTAG-TTTCAATCTGCTCTACTGCAACTTCAGGGAGATGAGATTTGTAACTTCAATCTGC
1 GATTTGTAGCTTT--ATCTGCTCCACTGCAACTTCA-GGAGATAAGATTGGTAGCTTCAATCTAC
* * * *
96949493 TCCACTACAATTTTAGAGAGATAAGATTTGTAGCTTC-ATCTTGCTCCACTACAACTTTAGGGAG
63 TCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTCAATCTTGCTCCACTACAACTTTAGGAAG
96949557 ATAA
128 ATAA
* * * * * * * ** *
96949561 GATTCGTTATGGTAGATTCAATCCGAC-CCACTACATCTTTAGGGGTATAAGATTTTTAGCATCA
1 GA----TT-T-GTAGCTT-TATCTG-CTCCACTGCAACTTCAGGAG-ATAAGATTGGTAGCTTCA
* * * * *
96949625 ATCTATTTCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAAT-TTGCTCCACTGCAATTTT
57 ATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTCAATCTTGCTCCACTACAACTTT
96949689 AAGG-AGATAA
122 -AGGAAGATAA
*
96949699 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 GATTTGTAGCTT-TATCTGCTCCACTGCAACTTCA-GGAGATAAGATT
96949747 CTTTATGGTA
Statistics
Matches: 372, Mismatches: 52, Indels: 56
0.77 0.11 0.12
Matches are distributed among these distances:
130 4 0.01
131 33 0.09
132 168 0.45
133 11 0.03
134 2 0.01
136 39 0.10
137 15 0.04
138 92 0.25
139 8 0.02
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (131 bp):
GATTTGTAGCTTTATCTGCTCCACTGCAACTTCAGGAGATAAGATTGGTAGCTTCAATCTACTCC
ACTGCAACTTCAGAGAGATAAGATTTGTAGCTTCAATCTTGCTCCACTACAACTTTAGGAAGATA
A
Found at i:96949789 original size:182 final size:182
Alignment explanation
Indices: 96949161--96949791 Score: 519
Period size: 182 Copynumber: 3.5 Consensus size: 182
96949151 AAGGGTATAG
* * * * * *
96949161 GATTTGTAGCTTTATCTTGCTCCACTGCAACTTCA-GAAGATAAGATTTGCTATAGTA-AGTTCA
1 GATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGTTATGGTAGA-TTCA
* ** * * ** * *
96949224 ATCCAACCCACTGTAACTTCAGGGGTATAGGA-TTGTAGC-TTTATCT-TGCTCCATTGCAACTT
65 ACCCAACCCACTACAACTTCAGGGGTATAAGATTTTTAGCATCAATCTAT--TTCACTGCAACTT
* * * * *
96949286 CA-AGAAGATAAGATTTGTAGCTT-TATCTTGCTCCACTGCAA-CTTCGAGAAGATAA
128 CAGAG-AGATAAGATTTGTAACTTCAATC-TGCTCCACTACAATTTTAGAG-AGATAA
* * * * * *
96949341 GATTGGTAGCTTCAATC-TGCTTCACTGCAACTTCAAGGTGATAAGATTC------GTAGCTTCA
1 GATTTGTAGCTTC-ATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGTTATGGTAGATTCA
* ** * * * * ** **
96949399 A-TCTGCTTCACTACAACTTTAGGAAG-ATAAGATTTGTAGTTTCAATCT-GCTCTACTGCAACT
65 ACCCAAC-CCACTACAACTTCAGG-GGTATAAGATTTTTAGCATCAATCTATTTC-ACTGCAACT
* *
96949461 TCAGGGAGATGAGATTTGTAACTTCAATCTGCTCCACTACAATTTTAGAGAGATAA
127 TCAGAGAGATAAGATTTGTAACTTCAATCTGCTCCACTACAATTTTAGAGAGATAA
*
96949517 GATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGTTATGGTAGATTCAA
1 GATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGTTATGGTAGATTCAA
* * * *
96949582 TCCGACCCACTACATCTTTAGGGGTATAAGATTTTTAGCATCAATCTATTTCACTGCAACTTCAG
66 CCCAACCCACTACAACTTCAGGGGTATAAGATTTTTAGCATCAATCTATTTCACTGCAACTTCAG
* * * *
96949647 AGAGATAAGATTTGTAGCTTTAATTTGCTCCACTGCAATTTTA-AGGAGATAA
131 AGAGATAAGATTTGTAACTTCAATCTGCTCCACTACAATTTTAGA-GAGATAA
* * *
96949699 GATTTGTAGCTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAAGATTCTTTATGGTATATTCA
1 GATTTGTAGCTTC-ATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGTTATGGTAGATTCA
* * **
96949763 ACCCAATCTACTGTAACTTCAGGGGTATA
65 ACCCAACCCACTACAACTTCAGGGGTATA
96949792 GGGTTTGTGG
Statistics
Matches: 362, Mismatches: 66, Indels: 44
0.77 0.14 0.09
Matches are distributed among these distances:
174 2 0.01
175 29 0.08
176 91 0.25
177 14 0.04
180 28 0.08
181 15 0.04
182 176 0.49
183 7 0.02
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (182 bp):
GATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGTTATGGTAGATTCAA
CCCAACCCACTACAACTTCAGGGGTATAAGATTTTTAGCATCAATCTATTTCACTGCAACTTCAG
AGAGATAAGATTTGTAACTTCAATCTGCTCCACTACAATTTTAGAGAGATAA
Found at i:96950217 original size:22 final size:22
Alignment explanation
Indices: 96950189--96950233 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
96950179 AACCTTTTAG
96950189 AGTAATATGCAAAAATCCTTTT
1 AGTAATATGCAAAAATCCTTTT
96950211 AGTAATATGCAAAAATCCTTTT
1 AGTAATATGCAAAAATCCTTTT
96950233 A
1 A
96950234 CTTGAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (22 bp):
AGTAATATGCAAAAATCCTTTT
Found at i:96954950 original size:18 final size:19
Alignment explanation
Indices: 96954929--96954964 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
96954919 TATTAGTTTT
96954929 ATTTTTA-TTATTTTGGGG
1 ATTTTTACTTATTTTGGGG
*
96954947 ATTTTTACTTTTTTTGGG
1 ATTTTTACTTATTTTGGG
96954965 AAGTTCACGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.14, C:0.03, G:0.19, T:0.64
Consensus pattern (19 bp):
ATTTTTACTTATTTTGGGG
Found at i:96976887 original size:28 final size:28
Alignment explanation
Indices: 96976847--96976903 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
96976837 ACATACGGAA
96976847 GATATTATTAGAGTGTCAAACCTACTAG
1 GATATTATTAGAGTGTCAAACCTACTAG
96976875 GATATTATTAGAGTGTCAAACCTACTAG
1 GATATTATTAGAGTGTCAAACCTACTAG
96976903 G
1 G
96976904 CAGATCAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (28 bp):
GATATTATTAGAGTGTCAAACCTACTAG
Found at i:96984189 original size:46 final size:46
Alignment explanation
Indices: 96984137--96984456 Score: 435
Period size: 46 Copynumber: 7.0 Consensus size: 46
96984127 AGTGTGCTCT
96984137 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
96984183 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
96984229 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
96984275 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
96984321 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
96984367 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
96984413 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
96984457 TCATGTCAAA
Statistics
Matches: 251, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 250 1.00
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:96985528 original size:11 final size:11
Alignment explanation
Indices: 96985512--96985540 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
96985502 GACTCGAAAG
96985512 GATTGGAAGAT
1 GATTGGAAGAT
96985523 GATTGGAAGAT
1 GATTGGAAGAT
96985534 GATTGGA
1 GATTGGA
96985541 GAGTCAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.38, T:0.28
Consensus pattern (11 bp):
GATTGGAAGAT
Found at i:96987612 original size:19 final size:18
Alignment explanation
Indices: 96987590--96987625 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
96987580 ATAAAAAGGA
96987590 TAAAGAAATAATAAATAAG
1 TAAAGAAATAA-AAATAAG
*
96987609 TAAATAAATAAAAATAA
1 TAAAGAAATAAAAATAA
96987626 TAATTCATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (18 bp):
TAAAGAAATAAAAATAAG
Found at i:96988937 original size:14 final size:14
Alignment explanation
Indices: 96988918--96988963 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
96988908 GACTTGAATT
96988918 TTTTTATTTTTTGG
1 TTTTTATTTTTTGG
*
96988932 TTTTTATATTTT-G
1 TTTTTATTTTTTGG
*
96988945 TTTATTTTTTTTTGG
1 TTT-TTATTTTTTGG
96988960 TTTT
1 TTTT
96988964 GGGCTAGATG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 4 0.15
14 19 0.70
15 4 0.15
ACGTcount: A:0.09, C:0.00, G:0.11, T:0.80
Consensus pattern (14 bp):
TTTTTATTTTTTGG
Found at i:96990135 original size:30 final size:27
Alignment explanation
Indices: 96990074--96990137 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
96990064 CTAAATTTAT
*
96990074 ATACCAAATTAGACAAAAAAAACTTAA
1 ATACCAAATTAGACAAAAAAAAATTAA
96990101 ATACCAAATTAAGA-AAAAAATCAAATTCAA
1 ATACCAAATT-AGACAAAAAA--AAATT-AA
96990131 ATACCAA
1 ATACCAA
96990138 CTATTATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
27 16 0.50
28 3 0.09
29 4 0.12
30 9 0.28
ACGTcount: A:0.62, C:0.16, G:0.03, T:0.19
Consensus pattern (27 bp):
ATACCAAATTAGACAAAAAAAAATTAA
Found at i:96991862 original size:19 final size:19
Alignment explanation
Indices: 96991836--96991882 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
96991826 TAATATATTG
*
96991836 AATTTTGTTGTAAAGTTCG
1 AATTTTGTTGTAAAGTTCA
*
96991855 ATTTTTGTTGTAAAGTTCA
1 AATTTTGTTGTAAAGTTCA
96991874 AATTTTGTT
1 AATTTTGTT
96991883 TATATTAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.26, C:0.04, G:0.17, T:0.53
Consensus pattern (19 bp):
AATTTTGTTGTAAAGTTCA
Found at i:96998058 original size:5 final size:5
Alignment explanation
Indices: 96998045--96998092 Score: 87
Period size: 5 Copynumber: 9.6 Consensus size: 5
96998035 ATCTTTTCAC
*
96998045 AATAA AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AAT
96998093 TTTTTTGGTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:97002764 original size:172 final size:172
Alignment explanation
Indices: 97002478--97002820 Score: 632
Period size: 172 Copynumber: 2.0 Consensus size: 172
97002468 GACATAATCG
* *
97002478 GTAAAAATCCCTAATATTCATAAGTACATGTTAGAGTGTGAATTTGATGTTGCTATAGAAGGGAA
1 GTAAAAATACCTAATATTCATAAGCACATGTTAGAGTGTGAATTTGATGTTGCTATAGAAGGGAA
* *
97002543 AAATGATTAGCATGTCATAAAACATAAGAAAATAGGATGAGGTTTAATTTACGAGCCTTGGGGCA
66 AAATGATCAGCATGTCATAAAACATAAGAAAATAGGATGAGGCTTAATTTACGAGCCTTGGGGCA
*
97002608 AAAGTGTAAATATGTGAAAGTTTAGGGGTAAAATGGTAATTA
131 AAAGTGTAAATATGTGAAAGTTTAGGGGCAAAATGGTAATTA
97002650 GTAAAAATACCTAATATTCATAAGCACATGTTAGAGTGTGAATTTGATGTTGCTATAGAAGGGAA
1 GTAAAAATACCTAATATTCATAAGCACATGTTAGAGTGTGAATTTGATGTTGCTATAGAAGGGAA
*
97002715 AAATGATCAGCATGTCATAAAACATAAGAAAGTAGGATGAGGCTTAATTTACGAGCCTTGGGGCA
66 AAATGATCAGCATGTCATAAAACATAAGAAAATAGGATGAGGCTTAATTTACGAGCCTTGGGGCA
97002780 AAAGTGTAAATATGTGAAAGTTTAGGGGCAAAATGGTAATT
131 AAAGTGTAAATATGTGAAAGTTTAGGGGCAAAATGGTAATT
97002821 TTGCCAAATC
Statistics
Matches: 165, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
172 165 1.00
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (172 bp):
GTAAAAATACCTAATATTCATAAGCACATGTTAGAGTGTGAATTTGATGTTGCTATAGAAGGGAA
AAATGATCAGCATGTCATAAAACATAAGAAAATAGGATGAGGCTTAATTTACGAGCCTTGGGGCA
AAAGTGTAAATATGTGAAAGTTTAGGGGCAAAATGGTAATTA
Found at i:97003284 original size:46 final size:46
Alignment explanation
Indices: 97003232--97003407 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
97003222 TATTTGGGCA
**
97003232 TCCGAGCTCGTTGAGTCAAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
97003278 TCCGAGCTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* * * * *
97003323 CATCCAAGCTCGTTGAGTTGAGCCCGATTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
97003371 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97003408 GTGGGTTACA
Statistics
Matches: 102, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 3 0.03
46 57 0.56
47 25 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:97003387 original size:93 final size:93
Alignment explanation
Indices: 97003228--97003400 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
97003218 AGGATATTTG
* * * * *
97003228 GGCATCCGAGCTCGTTGAGTCAAGTCCGAGTTCACTTATGGATGTGAATGTCCGAGCTCATTGAG
1 GGCATCCAAGCTCGTTGAGTCAAGCCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
97003293 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
** * *
97003321 GGCATCCAAGCTCGTTGAGTTGAGCCCGATTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCAAGCTCGTTGAGTCAAGCCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
*
97003386 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
97003401 CTTATGGGTG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCAAGCTCGTTGAGTCAAGCCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:97004799 original size:16 final size:17
Alignment explanation
Indices: 97004778--97004811 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
97004768 ACACGAAACA
97004778 AAAATAAAA-AATATTT
1 AAAATAAAATAATATTT
97004794 AAAATAAAATAATATTT
1 AAAATAAAATAATATTT
97004811 A
1 A
97004812 TTTATACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAATAAAATAATATTT
Found at i:97015873 original size:27 final size:27
Alignment explanation
Indices: 97015843--97015898 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
97015833 AAGATACATC
* *
97015843 TTTTGCTTAATAAATTTCATGTCTAAT
1 TTTTGCTTAAAAAAATTCATGTCTAAT
*
97015870 TTTTTCTTAAAAAAATTCATGTCTAAT
1 TTTTGCTTAAAAAAATTCATGTCTAAT
97015897 TT
1 TT
97015899 AAAATTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.32, C:0.11, G:0.05, T:0.52
Consensus pattern (27 bp):
TTTTGCTTAAAAAAATTCATGTCTAAT
Found at i:97023936 original size:10 final size:9
Alignment explanation
Indices: 97023918--97024061 Score: 55
Period size: 10 Copynumber: 15.4 Consensus size: 9
97023908 TACAAATTCT
*
97023918 TTTTCATAA
1 TTTTAATAA
97023927 TTTTATATAA
1 TTTTA-ATAA
97023937 TTTTAATAA
1 TTTTAATAA
* *
97023946 CTTTACATTAT
1 TTTTA-A-TAA
97023957 TTTTAATAA
1 TTTTAATAA
**
97023966 TTCTTTGTAAA
1 TT-TTAAT-AA
* *
97023977 TTTTTATAT
1 TTTTAATAA
97023986 TTTTCAA-AA
1 TTTT-AATAA
* *
97023995 TTCT-AT-T
1 TTTTAATAA
97024002 TTTTAAT--
1 TTTTAATAA
97024009 TTTTAATAA
1 TTTTAATAA
*
97024018 TTTTATATTA
1 TTTTA-ATAA
*
97024028 TGTTTAACAAA
1 T-TTTAA-TAA
97024039 TTTTAATAA
1 TTTTAATAA
*
97024048 TGTTTTATAA
1 T-TTTAATAA
97024058 TTTT
1 TTTT
97024062 TGCAATTTTT
Statistics
Matches: 102, Mismatches: 19, Indels: 28
0.68 0.13 0.19
Matches are distributed among these distances:
7 11 0.11
8 2 0.02
9 36 0.35
10 37 0.36
11 16 0.16
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (9 bp):
TTTTAATAA
Found at i:97023945 original size:19 final size:20
Alignment explanation
Indices: 97023918--97023967 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
97023908 TACAAATTCT
* *
97023918 TTTTCATAATTTTATA-TAA
1 TTTTAATAATTTTACATTAA
* *
97023937 TTTTAATAACTTTACATTAT
1 TTTTAATAATTTTACATTAA
97023957 TTTTAATAATT
1 TTTTAATAATT
97023968 CTTTGTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTTAATAATTTTACATTAA
Found at i:97024134 original size:28 final size:27
Alignment explanation
Indices: 97024076--97024133 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
97024066 ATTTTTATGG
*
97024076 TTTTATAATTTTCTAAACTTCTAAACT
1 TTTTATAATTTTCTAAAATTCTAAACT
97024103 TTTTATAATTTT-TGAAAAATTCT-AACT
1 TTTTATAATTTTCT--AAAATTCTAAACT
97024130 TTTT
1 TTTT
97024134 TTTTAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 1 0.04
27 20 0.71
28 7 0.25
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (27 bp):
TTTTATAATTTTCTAAAATTCTAAACT
Found at i:97034402 original size:22 final size:22
Alignment explanation
Indices: 97034374--97034419 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
97034364 GCAATTAAAG
97034374 AAAGATGAACAGTAAATATTTT
1 AAAGATGAACAGTAAATATTTT
97034396 AAAGATGAACAGTAAATATTTT
1 AAAGATGAACAGTAAATATTTT
97034418 AA
1 AA
97034420 CTCATAACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.52, C:0.04, G:0.13, T:0.30
Consensus pattern (22 bp):
AAAGATGAACAGTAAATATTTT
Found at i:97039604 original size:27 final size:27
Alignment explanation
Indices: 97039554--97039605 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
97039544 GTTGGATTTA
* *
97039554 TAAAAAAATAATTTAATTATAATATGT
1 TAAAAAAATAATTTAATGAAAATATGT
97039581 TAAAAAAATAATTTTAA-GAAAATAT
1 TAAAAAAATAA-TTTAATGAAAATAT
97039606 TGTATTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (27 bp):
TAAAAAAATAATTTAATGAAAATATGT
Found at i:97041002 original size:14 final size:13
Alignment explanation
Indices: 97040961--97041002 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
97040951 AGTAATGTAG
97040961 AAATAAAT-TTTA
1 AAATAAATATTTA
97040973 AAATAAATATTATA
1 AAATAAATATT-TA
*
97040987 AAGTAAATAGTTTA
1 AAATAAATA-TTTA
97041001 AA
1 AA
97041003 TGAAAGTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 8 0.31
13 2 0.08
14 14 0.54
15 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (13 bp):
AAATAAATATTTA
Found at i:97042866 original size:24 final size:24
Alignment explanation
Indices: 97042815--97042867 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
97042805 AATTCATTGG
* * *
97042815 ATAATATTTTTTAAGTGATGTAAA
1 ATAATATTATTTAAATGATGCAAA
97042839 ATAATATTATTTAAATGAT-CAAA
1 ATAATATTATTTAAATGATGCAAA
97042862 TATAAT
1 -ATAAT
97042868 TAAAACGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 3 0.12
24 22 0.88
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (24 bp):
ATAATATTATTTAAATGATGCAAA
Found at i:97043586 original size:9 final size:9
Alignment explanation
Indices: 97043574--97043602 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
97043564 AAGATAAAAA
97043574 ATAAAAGTT
1 ATAAAAGTT
97043583 ATAAAAGTT
1 ATAAAAGTT
97043592 ATAAAAGTT
1 ATAAAAGTT
97043601 AT
1 AT
97043603 TAAATATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.34
Consensus pattern (9 bp):
ATAAAAGTT
Found at i:97043978 original size:15 final size:15
Alignment explanation
Indices: 97043953--97043989 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
97043943 ATCTGTTTTT
*
97043953 CAGTAGTGTTGGAAA
1 CAGTGGTGTTGGAAA
*
97043968 TAGTGGTGTTGGAAA
1 CAGTGGTGTTGGAAA
97043983 CAGTGGT
1 CAGTGGT
97043990 TTCGAGGCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.38, T:0.30
Consensus pattern (15 bp):
CAGTGGTGTTGGAAA
Found at i:97044587 original size:5 final size:5
Alignment explanation
Indices: 97044571--97044608 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
97044561 AAGTATTAAG
97044571 TATAT T-TAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
97044609 ATAAAACAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:97045840 original size:40 final size:39
Alignment explanation
Indices: 97045717--97045841 Score: 103
Period size: 40 Copynumber: 3.2 Consensus size: 39
97045707 GACTTCGAGT
* *
97045717 CGATGAGACACTAAGTGTCAATTTACTACTTCGAATTAATT
1 CGATGAGACACTGAGTGTCAATTTA-TACTTCGAATT-ATC
* * * ** *
97045758 CAATGATG-CACTGGGTGCCAA-TT-TACTTCGGTTTAGC
1 CGATGA-GACACTGAGTGTCAATTTATACTTCGAATTATC
* *
97045795 TGATGAGACATTGAGTGTCAATTTAGTACTTCGAATTATC
1 CGATGAGACACTGAGTGTCAATTTA-TACTTCGAATTATC
97045835 CGATGAG
1 CGATGAG
97045842 GCATTGGGTG
Statistics
Matches: 62, Mismatches: 17, Indels: 11
0.69 0.19 0.12
Matches are distributed among these distances:
36 1 0.02
37 15 0.24
38 11 0.18
40 19 0.31
41 15 0.24
42 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (39 bp):
CGATGAGACACTGAGTGTCAATTTATACTTCGAATTATC
Found at i:97052066 original size:21 final size:21
Alignment explanation
Indices: 97052025--97052067 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
97052015 ATTTGAATTT
*
97052025 TTTAATTTAAAAATATGAATA
1 TTTAATTTAAAAATATAAATA
97052046 TTTAA-TTAAAAATATCAAATA
1 TTTAATTTAAAAATAT-AAATA
97052067 T
1 T
97052068 ATATTTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
TTTAATTTAAAAATATAAATA
Found at i:97054787 original size:26 final size:27
Alignment explanation
Indices: 97054751--97054890 Score: 88
Period size: 30 Copynumber: 4.9 Consensus size: 27
97054741 ATTTTTCTCA
97054751 TAAAATTTATAACAAATTA-AAAATAT
1 TAAAATTTATAACAAATTATAAAATAT
* *
97054777 TAAAATTTATAATAAATTATAAAATTT
1 TAAAATTTATAACAAATTATAAAATAT
* * *
97054804 TATAAAATTAGTAA-AACATATTTAAAATTT
1 TA-AAATTTA-TAACAA-AT-TATAAAATAT
*
97054834 TATAATGACTTATAA-AAACTTATAAATAATAT
1 TA-AA--ATTTATAACAAA-TTAT-AA-AATAT
* * *
97054866 AAAAATATCTAACAAATTATAAAAT
1 TAAAATTTATAACAAATTATAAAAT
97054891 TTATAAAAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 21
0.74 0.09 0.17
Matches are distributed among these distances:
26 18 0.20
27 11 0.12
28 10 0.11
29 14 0.15
30 20 0.22
31 10 0.11
32 9 0.10
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.37
Consensus pattern (27 bp):
TAAAATTTATAACAAATTATAAAATAT
Found at i:97054810 original size:29 final size:28
Alignment explanation
Indices: 97054750--97054898 Score: 103
Period size: 29 Copynumber: 5.2 Consensus size: 28
97054740 TATTTTTCTC
*
97054750 ATAAAATTTATAACAAATTA-AAAA-TAT
1 ATAAAATTTATAA-AAATTATAAAATTTT
97054777 -TAAAATTTATAATAAATTATAAAATTTT
1 ATAAAATTTATAA-AAATTATAAAATTTT
*
97054805 ATAAAA-TTAGTAAAACATATTTAAAATTTT
1 ATAAAATTTA-TAAAA-AT-TATAAAATTTT
* * **
97054835 ATAATGACTTATAAAAACTTAT-AAATAAT
1 ATAA-AATTTATAAAAA-TTATAAAATTTT
* *
97054864 ATAAAAATATCTAACAAATTATAAAA-TTT
1 AT-AAAATTTATAA-AAATTATAAAATTTT
97054893 ATAAAA
1 ATAAAA
97054899 AAAAAAAGTC
Statistics
Matches: 97, Mismatches: 13, Indels: 23
0.73 0.10 0.17
Matches are distributed among these distances:
26 18 0.19
27 4 0.04
28 11 0.11
29 29 0.30
30 25 0.26
31 7 0.07
32 3 0.03
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (28 bp):
ATAAAATTTATAAAAATTATAAAATTTT
Found at i:97054813 original size:18 final size:20
Alignment explanation
Indices: 97054777--97054819 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
97054767 TTAAAAATAT
97054777 TAAAATTTATAATAAATTA-
1 TAAAATTTATAATAAATTAG
97054796 TAAAATTT-T-ATAAAATTAG
1 TAAAATTTATAAT-AAATTAG
97054815 TAAAA
1 TAAAA
97054820 CATATTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.09
18 7 0.32
19 13 0.59
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
TAAAATTTATAATAAATTAG
Found at i:97054847 original size:50 final size:47
Alignment explanation
Indices: 97054768--97054899 Score: 133
Period size: 50 Copynumber: 2.7 Consensus size: 47
97054758 TATAACAAAT
**
97054768 TAAAAATATTAAAATTTATAATAAATTATAAAATTTTATAAAATTAG
1 TAAAAATATTAAAATTTATAATAAATTATAAAAACTTATAAAATTAG
* * *
97054815 TAAAACATATTTAAAATTTTATAATGACTTATAAAAACTTATAAATAATA-
1 TAAAA-ATA-TTAAAA-TTTATAATAAATTATAAAAACTTATAAA-ATTAG
* *
97054865 TAAAAATATCTAACAAATTATAA-AATTTATAAAAA
1 TAAAAATAT-TAA-AATTTATAATAAATTATAAAAA
97054900 AAAAAAGTCA
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
47 5 0.07
48 14 0.20
49 18 0.25
50 31 0.44
51 3 0.04
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.37
Consensus pattern (47 bp):
TAAAAATATTAAAATTTATAATAAATTATAAAAACTTATAAAATTAG
Found at i:97055678 original size:19 final size:20
Alignment explanation
Indices: 97055654--97055709 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
97055644 ATTAGAATTT
97055654 TTTATAAGTTTTTATAA-AA
1 TTTATAAGTTTTTATAATAA
* **
97055673 TTTATAAGCTTTTATGAATTT
1 TTTATAAGTTTTTAT-AATAA
97055694 TTTATAA-TTTTTATAA
1 TTTATAAGTTTTTATAA
97055710 GTTTATAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
19 16 0.52
20 8 0.26
21 7 0.23
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (20 bp):
TTTATAAGTTTTTATAATAA
Found at i:97055813 original size:10 final size:10
Alignment explanation
Indices: 97055634--97055814 Score: 86
Period size: 10 Copynumber: 18.0 Consensus size: 10
97055624 ATTGGGATTA
97055634 TTTATAATTT
1 TTTATAATTT
* *
97055644 ATTAGAATTT
1 TTTATAATTT
*
97055654 TTTATAAGTT
1 TTTATAATTT
**
97055664 TTTATAA-AA
1 TTTATAATTT
**
97055673 TTTATAAGCT
1 TTTATAATTT
97055683 TTTATGAATTT
1 TTTAT-AATTT
97055694 TTTATAA-TT
1 TTTATAATTT
*
97055703 TTTATAAGTT
1 TTTATAATTT
* * **
97055713 TATAGAAAGT
1 TTTATAATTT
*
97055723 TTTA-AATAT
1 TTTATAATTT
97055732 TTTA-AATATGT
1 TTTATAAT-T-T
97055743 TTTAT-ATTAT
1 TTTATAATT-T
*
97055753 TTTATAATAT
1 TTTATAATTT
* *
97055763 ATTAGAATTT
1 TTTATAATTT
*
97055773 TTTATAA-TA
1 TTTATAATTT
*
97055782 TATATAAGTTTT
1 TTTATAA--TTT
*
97055794 TTTTTGAATTT
1 TTTAT-AATTT
97055805 TTTATAATTT
1 TTTATAATTT
97055815 ACAAGTTTAT
Statistics
Matches: 128, Mismatches: 32, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
9 33 0.26
10 65 0.51
11 24 0.19
12 4 0.03
13 2 0.02
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (10 bp):
TTTATAATTT
Found at i:97056088 original size:2 final size:2
Alignment explanation
Indices: 97056081--97056106 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
97056071 ACTCTTACTA
97056081 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
97056107 TTCAATTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97062237 original size:24 final size:23
Alignment explanation
Indices: 97062193--97062238 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
97062183 ATGCATAATC
*
97062193 TTATTAAACACTAATTTATGCAG
1 TTATTAAACACTAATTCATGCAG
97062216 TTATTAAA-ACTTAATGTCATGCA
1 TTATTAAACAC-TAAT-TCATGCA
97062239 ATCAAATCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 2 0.10
23 12 0.60
24 6 0.30
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (23 bp):
TTATTAAACACTAATTCATGCAG
Found at i:97063843 original size:40 final size:40
Alignment explanation
Indices: 97063780--97063875 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
97063770 ATACCGACCA
* *
97063780 GAAGCCTACTAGGGCATTAAGCCCGACA-ATTACACCGGCAC
1 GAAGCCTGCTA-GGCATTAAGCCCGACAGA-TACACCAGCAC
* *
97063821 GAAGCCTGCTAGGCATTAAGCCCGATAGATACACCAGTAC
1 GAAGCCTGCTAGGCATTAAGCCCGACAGATACACCAGCAC
97063861 GAAGCCTGCTAGGCA
1 GAAGCCTGCTAGGCA
97063876 CAAGGCTCGA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
40 39 0.78
41 11 0.22
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (40 bp):
GAAGCCTGCTAGGCATTAAGCCCGACAGATACACCAGCAC
Found at i:97063917 original size:46 final size:46
Alignment explanation
Indices: 97063865--97063970 Score: 149
Period size: 46 Copynumber: 2.3 Consensus size: 46
97063855 CAGTACGAAG
* *
97063865 CCTGCTAGGCACAAGGCTCGATACATTACAGTACACCGGCATAAAA
1 CCTGCTAGGCACAAGGCCCAATACATTACAGTACACCGGCATAAAA
* * * *
97063911 CCTGCTAGGCATAAGGCCCAATACATTACAGTACACTGGTATAAAG
1 CCTGCTAGGCACAAGGCCCAATACATTACAGTACACCGGCATAAAA
*
97063957 CCTGGTAGGCACAA
1 CCTGCTAGGCACAA
97063971 AGAGCTAATT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 52 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (46 bp):
CCTGCTAGGCACAAGGCCCAATACATTACAGTACACCGGCATAAAA
Found at i:97066258 original size:24 final size:24
Alignment explanation
Indices: 97066222--97066316 Score: 145
Period size: 24 Copynumber: 4.0 Consensus size: 24
97066212 GAAGCTTCAT
97066222 TGTTGTGGTCAAGCCACTCAATAA
1 TGTTGTGGTCAAGCCACTCAATAA
* *
97066246 TGTTGTGGACAAGCCACTCAATAG
1 TGTTGTGGTCAAGCCACTCAATAA
*
97066270 TGTTGTGGCCAAGCCACTCAATAA
1 TGTTGTGGTCAAGCCACTCAATAA
* *
97066294 CGTTGTGGTCAAGCCGCTCAATA
1 TGTTGTGGTCAAGCCACTCAATA
97066317 TTGCAGTAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TGTTGTGGTCAAGCCACTCAATAA
Found at i:97068390 original size:25 final size:27
Alignment explanation
Indices: 97068353--97068405 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
97068343 TCAAACATGC
97068353 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
97068379 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
97068405 A
1 A
97068406 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:97069923 original size:26 final size:26
Alignment explanation
Indices: 97069892--97069999 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
97069882 TGAAATGCCC
* *
97069892 ATCATGAAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
97069918 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
97069944 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
97069970 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
97069996 ATCA
1 ATCA
97070000 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:97077173 original size:20 final size:20
Alignment explanation
Indices: 97077148--97077185 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97077138 CTAAAAACGC
*
97077148 CAGTATAGCTTAACTTTTCA
1 CAGTATAGCTTAAATTTTCA
*
97077168 CAGTATAGTTTAAATTTT
1 CAGTATAGCTTAAATTTT
97077186 TGTGGCGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.45
Consensus pattern (20 bp):
CAGTATAGCTTAAATTTTCA
Found at i:97077988 original size:15 final size:15
Alignment explanation
Indices: 97077965--97078015 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
97077955 ATACCCATGG
*
97077965 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
97077980 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
* *
97077995 TCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
97078009 CCTTAAA
1 CCATAAA
97078016 TATTAAACCG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:97078432 original size:41 final size:40
Alignment explanation
Indices: 97078264--97078432 Score: 214
Period size: 41 Copynumber: 4.1 Consensus size: 40
97078254 GTTATATGAC
* * *
97078264 TTTTAGCGGCGTTTTTATCAAAAGCGCCGCTAATGCT-TCGAC
1 TTTTAGCGGCG-TTTTAACAAAAGCGCCGCTATTGCTCT-G-T
*
97078306 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTAACAAAAGCGCCGCTATTGCTCTGT
** *
97078346 TTTTAGCGGCGTTTTAACAAAAAATGCCGCTATTGCACTGT
1 TTTTAGCGGCGTTTTAAC-AAAAGCGCCGCTATTGCTCTGT
*
97078387 TTTTAGCGGCGTTTTAACAAAAGCGCCGCTATTACTCTGT
1 TTTTAGCGGCGTTTTAACAAAAGCGCCGCTATTGCTCTGT
97078427 GTTTTA
1 -TTTTA
97078433 CAATTTTTGC
Statistics
Matches: 113, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
40 35 0.31
41 66 0.58
42 12 0.11
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTAACAAAAGCGCCGCTATTGCTCTGT
Found at i:97083384 original size:24 final size:23
Alignment explanation
Indices: 97083347--97083397 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 23
97083337 TTTCTAGAAG
* *
97083347 ATTTAGTATTATTAGTATAATAT
1 ATTTAGGATTATTAGCATAATAT
97083370 ATTTAGGATTTATTAGCATAATAT
1 ATTTAGGA-TTATTAGCATAATAT
97083394 ATTT
1 ATTT
97083398 GACATTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (23 bp):
ATTTAGGATTATTAGCATAATAT
Found at i:97083408 original size:24 final size:24
Alignment explanation
Indices: 97083347--97083408 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
97083337 TTTCTAGAAG
* *
97083347 ATTTAGTATT-ATTAGTATAATAT
1 ATTTAGCATTGATTAGCATAATAT
* *
97083370 ATTTAGGATTTATTAGCATAATAT
1 ATTTAGCATTGATTAGCATAATAT
97083394 ATTT-GACATTGATTA
1 ATTTAG-CATTGATTA
97083409 TAATTAAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 10 0.30
24 23 0.70
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTGATTAGCATAATAT
Found at i:97086963 original size:28 final size:28
Alignment explanation
Indices: 97086931--97086993 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
97086921 ATTTTCCCTC
97086931 ATTTTCT-CTCACTTTATATATTTTTGA-A
1 ATTTTCTACTCACTTT-TAT-TTTTTGATA
* *
97086959 ATTTT-TATTTACTTTTATTTTTTGATA
1 ATTTTCTACTCACTTTTATTTTTTGATA
97086986 ATTTTCTA
1 ATTTTCTA
97086994 AAATTGTTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
26 7 0.23
27 10 0.33
28 13 0.43
ACGTcount: A:0.24, C:0.10, G:0.03, T:0.63
Consensus pattern (28 bp):
ATTTTCTACTCACTTTTATTTTTTGATA
Found at i:97091681 original size:46 final size:48
Alignment explanation
Indices: 97091537--97091802 Score: 282
Period size: 47 Copynumber: 5.7 Consensus size: 48
97091527 GTTGTTGGCT
* ** *
97091537 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCC-ACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGA-GATGAGAGCC
* * *
97091583 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGAGAGCC
* * * *
97091631 AGTGTAAGA-CATGTCAGGGACAT-GCATCGGCCTCGATACGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATG-AGAGCC
* * * *
97091677 AGTGTAAGA-CATGTCTTGTACAT-GCATCGG-CTATGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-TGAGATGAGAGCC
* *
97091723 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGAGAGCC
97091770 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
97091803 ACCTTACCCA
Statistics
Matches: 185, Mismatches: 25, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
45 3 0.02
46 69 0.37
47 81 0.44
48 31 0.17
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGAGAGCC
Found at i:97091791 original size:140 final size:141
Alignment explanation
Indices: 97091537--97091802 Score: 376
Period size: 140 Copynumber: 1.9 Consensus size: 141
97091527 GTTGTTGGCT
* *
97091537 AGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
* *
97091602 GACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCAGGGACAT-GCATCGGCCTCG
66 GACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCAGGGACATGGCATCGGCCTCG
97091666 ATACGTAAGCC
131 ATACGTAAGCC
* * * * * *
97091677 AGTGTAAGACATGTCTTGTACATGCATCGGCTATGA-GATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATGATGAGAGCCAGTGTAAGACCATGTCTG
* * *
97091741 GGACATGGCATCGAC-TTGAGATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65 GGACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGA-CATGTCAGGGACATGGCATCGGC
97091803 ACCTTACCCA
Statistics
Matches: 110, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
139 20 0.18
140 81 0.74
141 9 0.08
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCAGGGACATGGCATCGGCCTCG
ATACGTAAGCC
Found at i:97096120 original size:15 final size:15
Alignment explanation
Indices: 97096100--97096134 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
97096090 TAGGAAGATA
*
97096100 TTATTTTATTTTTAT
1 TTATTTTATTTTAAT
97096115 TTATTTTATTTTAAT
1 TTATTTTATTTTAAT
97096130 TTATT
1 TTATT
97096135 AAATTACTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTATTTTATTTTAAT
Found at i:97096276 original size:41 final size:40
Alignment explanation
Indices: 97096219--97096302 Score: 114
Period size: 41 Copynumber: 2.1 Consensus size: 40
97096209 TACTTTTGTA
* *
97096219 TTCCTACTTCAATTTGGAATTGGATTATTCTCTCTTCTCTT
1 TTCCTACTTCAATTTGGAATTGAATTATTATCTCTTCT-TT
* * *
97096260 TTCCTATTTCTATTTGGAATTGAATTATTATCTTTTCTTT
1 TTCCTACTTCAATTTGGAATTGAATTATTATCTCTTCTTT
97096300 TTC
1 TTC
97096303 AATTTGACGT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
40 5 0.13
41 33 0.87
ACGTcount: A:0.18, C:0.18, G:0.08, T:0.56
Consensus pattern (40 bp):
TTCCTACTTCAATTTGGAATTGAATTATTATCTCTTCTTT
Found at i:97102745 original size:41 final size:40
Alignment explanation
Indices: 97102688--97102771 Score: 114
Period size: 41 Copynumber: 2.1 Consensus size: 40
97102678 TACTTTTGTA
* *
97102688 TTCCTACTTCAATTTGGAATTGGATTATTTTCTCTTCTCTT
1 TTCCTACTTCAATTTGGAATTGAAATATTTTCTCTTCT-TT
* * *
97102729 TTCCTATTTCCATTTGGAATTGAAATATTTTCTTTTCTTT
1 TTCCTACTTCAATTTGGAATTGAAATATTTTCTCTTCTTT
97102769 TTC
1 TTC
97102772 AATTTGATGT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
40 5 0.13
41 33 0.87
ACGTcount: A:0.18, C:0.18, G:0.08, T:0.56
Consensus pattern (40 bp):
TTCCTACTTCAATTTGGAATTGAAATATTTTCTCTTCTTT
Found at i:97113099 original size:28 final size:28
Alignment explanation
Indices: 97113068--97113121 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
97113058 TATGACCCGA
97113068 GTTAGTATACTGAAAGTGTAAAGTTTCG
1 GTTAGTATACTGAAAGTGTAAAGTTTCG
97113096 GTTAGTATACTGAAAGTGTAAAGTTT
1 GTTAGTATACTGAAAGTGTAAAGTTT
97113122 TGGTAGTGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (28 bp):
GTTAGTATACTGAAAGTGTAAAGTTTCG
Found at i:97117305 original size:27 final size:27
Alignment explanation
Indices: 97117266--97117325 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
97117256 TGGAAAAAGG
* * *
97117266 TTCTTTCTTCAAGATATTATTCTCTAT
1 TTCTCTCTGCAAGATATTACTCTCTAT
97117293 TTCTCTCTGCAAGATATTACTCTCTAT
1 TTCTCTCTGCAAGATATTACTCTCTAT
97117320 TTCTCT
1 TTCTCT
97117326 TTCTTAAATC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.20, C:0.23, G:0.05, T:0.52
Consensus pattern (27 bp):
TTCTCTCTGCAAGATATTACTCTCTAT
Found at i:97119877 original size:12 final size:13
Alignment explanation
Indices: 97119860--97119892 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
97119850 GCAATTTAAA
97119860 TTTTATT-CTAAT
1 TTTTATTACTAAT
97119872 TTTTATTACTAAT
1 TTTTATTACTAAT
97119885 TCTTTATT
1 T-TTTATT
97119893 TTCCCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 6 0.32
14 6 0.32
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTATTACTAAT
Found at i:97120723 original size:43 final size:43
Alignment explanation
Indices: 97120661--97120747 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
97120651 ACTCGGGAGA
* *
97120661 TGATTGATGCAGCCGCTGGAGGAATTATCAATAATAAGACACC
1 TGATTGATGCAGCCACTGGAGGAACTATCAATAATAAGACACC
97120704 TGATTGATGCAGCCACTGGAGGAACTATCAATAATAAGACACC
1 TGATTGATGCAGCCACTGGAGGAACTATCAATAATAAGACACC
97120747 T
1 T
97120748 AAGATGGCTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.23
Consensus pattern (43 bp):
TGATTGATGCAGCCACTGGAGGAACTATCAATAATAAGACACC
Found at i:97126613 original size:110 final size:110
Alignment explanation
Indices: 97126488--97126687 Score: 269
Period size: 110 Copynumber: 1.8 Consensus size: 110
97126478 AAGATTGGAA
* * * * * * *
97126488 TGGCATATTACGATACATGAAAGTGTGTGA-GTCCATGTGGCTAAGACCCACT-GTAAGATATGA
1 TGGCAGATCACGATACATGAAAATGTGT-ACGTCCATATGGCTAAGA-CCAATGGCAAGATACGA
97126551 CTGCATGAATGTTCATGATGTAGCCTTTAATAGTGTGAACATTGAAC
64 CTGCATGAATGTTCATGATGTAGCCTTTAATAGTGTGAACATTGAAC
* *
97126598 TGGCAGATCACGATACATGAAAATGTGTACGTCCATATGGCTGAGACCAATGGCAAGATACGATT
1 TGGCAGATCACGATACATGAAAATGTGTACGTCCATATGGCTAAGACCAATGGCAAGATACGACT
* *
97126663 GTATGAATGTTCATGGTGTAGCCTT
66 GCATGAATGTTCATGATGTAGCCTT
97126688 CGATAATATG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
109 5 0.06
110 72 0.94
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (110 bp):
TGGCAGATCACGATACATGAAAATGTGTACGTCCATATGGCTAAGACCAATGGCAAGATACGACT
GCATGAATGTTCATGATGTAGCCTTTAATAGTGTGAACATTGAAC
Found at i:97126716 original size:110 final size:110
Alignment explanation
Indices: 97126497--97126728 Score: 252
Period size: 110 Copynumber: 2.1 Consensus size: 110
97126487 ATGGCATATT
* * * * *
97126497 ACGATACATGAAAGTGTGTGAGTCCATGTGGCTAAGACCCACTGTAAGATATGACTGCATGAATG
1 ACGATACATGAAAATGTGTGAGTCCATATGGCTAAGACCCAATGCAAGATACGACTGCATGAATG
* * * * ***
97126562 TTCATGATGTAGCCTTTAATAGTGTGAACATTGAACTGGCAGATC
66 TTCATGATGTAGCCTTCAATAATATGAACATAGAACAAACAGATC
* * *
97126607 ACGATACATGAAAATGTGT-ACGTCCATATGGCTGAGA-CCAATGGCAAGATACGATTGTATGAA
1 ACGATACATGAAAATGTGTGA-GTCCATATGGCTAAGACCCAAT-GCAAGATACGACTGCATGAA
* * *
97126670 TGTTCATGGTGTAGCCTTCGATAATATGAACATAGAACAAATAGATC
64 TGTTCATGATGTAGCCTTCAATAATATGAACATAGAACAAACAGATC
**
97126717 ATAATACATGAA
1 ACGATACATGAA
97126729 TTTATGTATA
Statistics
Matches: 100, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
109 5 0.05
110 95 0.95
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (110 bp):
ACGATACATGAAAATGTGTGAGTCCATATGGCTAAGACCCAATGCAAGATACGACTGCATGAATG
TTCATGATGTAGCCTTCAATAATATGAACATAGAACAAACAGATC
Found at i:97126848 original size:23 final size:24
Alignment explanation
Indices: 97126801--97126849 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
97126791 TAAACACGTA
*
97126801 ATTTTGTATGTCGCCTTTGTAGCAT
1 ATTTTGTATG-CGCCCTTGTAGCAT
*
97126826 ATTTTGTATG-GCCCTTGTGGCAT
1 ATTTTGTATGCGCCCTTGTAGCAT
97126849 A
1 A
97126850 CTTTAATAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 12 0.55
25 10 0.45
ACGTcount: A:0.16, C:0.16, G:0.22, T:0.45
Consensus pattern (24 bp):
ATTTTGTATGCGCCCTTGTAGCAT
Found at i:97149905 original size:23 final size:23
Alignment explanation
Indices: 97149854--97149908 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
97149844 ACAAGTGAAT
*
97149854 TAATTAAAAATTGAATTTAAAGC
1 TAATTCAAAATTGAATTTAAAGC
97149877 TAATTCAAAATTGAATTTAAAGC
1 TAATTCAAAATTGAATTTAAAGC
97149900 TAATTCAAA
1 TAATTCAAA
97149909 TTGGGTCCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35
Consensus pattern (23 bp):
TAATTCAAAATTGAATTTAAAGC
Found at i:97157127 original size:34 final size:34
Alignment explanation
Indices: 97157084--97157151 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
97157074 AAAGAGTGAA
97157084 GGAAGAAGAAAGGAGTTTGTCCAAGCATTGGTTG
1 GGAAGAAGAAAGGAGTTTGTCCAAGCATTGGTTG
97157118 GGAAGAAGAAAGGAGTTTGTCCAAGCATTGGTTG
1 GGAAGAAGAAAGGAGTTTGTCCAAGCATTGGTTG
97157152 AAAGTACTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.09, G:0.35, T:0.24
Consensus pattern (34 bp):
GGAAGAAGAAAGGAGTTTGTCCAAGCATTGGTTG
Found at i:97159578 original size:23 final size:23
Alignment explanation
Indices: 97159547--97159624 Score: 95
Period size: 23 Copynumber: 3.4 Consensus size: 23
97159537 TCGTAAGAGT
* *
97159547 TTACTGTTTCAGCTCACTGGAGC
1 TTACCGTTTCAGCTCAATGGAGC
*
97159570 TTACCGTTTCAGCTCATTGGAGC
1 TTACCGTTTCAGCTCAATGGAGC
* *
97159593 TTACTGTTT-AGCTCAATAGAGC
1 TTACCGTTTCAGCTCAATGGAGC
*
97159615 TTACCATTTC
1 TTACCGTTTC
97159625 TGTAATGCGG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
22 18 0.38
23 29 0.62
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (23 bp):
TTACCGTTTCAGCTCAATGGAGC
Found at i:97160209 original size:7 final size:7
Alignment explanation
Indices: 97160197--97160221 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
97160187 GTTATTATAT
97160197 TATATTA
1 TATATTA
97160204 TATATTA
1 TATATTA
97160211 TATATTA
1 TATATTA
97160218 TATA
1 TATA
97160222 AATAAGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TATATTA
Found at i:97160685 original size:24 final size:20
Alignment explanation
Indices: 97160659--97160699 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
97160649 AATATATAAA
97160659 AGTAAGTGAATTTAGTTAGG
1 AGTAAGTGAATTTAGTTAGG
97160679 AGTAAGTGAATTTAGTTAGG
1 AGTAAGTGAATTTAGTTAGG
97160699 A
1 A
97160700 TTAAATTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.34
Consensus pattern (20 bp):
AGTAAGTGAATTTAGTTAGG
Found at i:97161983 original size:12 final size:12
Alignment explanation
Indices: 97161966--97161990 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97161956 GCCGACTACT
97161966 GTTACTGTTACC
1 GTTACTGTTACC
97161978 GTTACTGTTACC
1 GTTACTGTTACC
97161990 G
1 G
97161991 ATTTGGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:97162020 original size:51 final size:50
Alignment explanation
Indices: 97161962--97162091 Score: 157
Period size: 45 Copynumber: 2.7 Consensus size: 50
97161952 ATGTGCCGAC
97161962 TACTGTTACTGTTACCGTTACTGTTACCGATTTGGCACTTTGTGTGTCT-AA
1 TACTGTTACTGTTACCGTTACTGTT-CCGATTTGGCACTTTGTGTGT-TGAA
*
97162013 TACTGTTACTGTTACCGTTATCTATT-C-A----GCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACCGTTA-CTGTTCCGATTTGGCACTTTGTGTGTTGAA
*
97162058 TACTGTTACTGTTACTGTTACTGTTCCGAATTTG
1 TACTGTTACTGTTACCGTTACTGTTCCG-ATTTG
97162092 TTCCGCTGAG
Statistics
Matches: 67, Mismatches: 3, Indels: 18
0.76 0.03 0.20
Matches are distributed among these distances:
44 5 0.07
45 35 0.52
47 1 0.01
49 1 0.01
50 1 0.01
51 20 0.30
52 4 0.06
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (50 bp):
TACTGTTACTGTTACCGTTACTGTTCCGATTTGGCACTTTGTGTGTTGAA
Found at i:97162069 original size:6 final size:6
Alignment explanation
Indices: 97162058--97162082 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
97162048 GTGTGTTGAA
97162058 TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT T
97162083 CCGAATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:97162269 original size:18 final size:18
Alignment explanation
Indices: 97162246--97162448 Score: 142
Period size: 18 Copynumber: 11.3 Consensus size: 18
97162236 AAAGGTATAA
* *
97162246 AATAATTGATTATTACTG
1 AATAATTGACTGTTACTG
*
97162264 AATAATTGACTGTTACCG
1 AATAATTGACTGTTACTG
97162282 AATAATTGACTGTTACTG
1 AATAATTGACTGTTACTG
* * *
97162300 GATAATAGACTGTTACCG
1 AATAATTGACTGTTACTG
* * *
97162318 AATAACTGAATATTACTG
1 AATAATTGACTGTTACTG
*
97162336 AATAATTGA-TCATTACTG
1 AATAATTGACT-GTTACTG
* * * * *
97162354 AATAACTAATTGTCATTG
1 AATAATTGACTGTTACTG
* *
97162372 AATAAATGACTATTACTG
1 AATAATTGACTGTTACTG
* * * *
97162390 AATAACTTAATTGCTATTG
1 AATAA-TTGACTGTTACTG
* *
97162409 AAT-ATCTGA-TTTTACTA
1 AATAAT-TGACTGTTACTG
97162426 AATAATTGACTGTTACTG
1 AATAATTGACTGTTACTG
*
97162444 GATAA
1 AATAA
97162449 CCGATCAATT
Statistics
Matches: 140, Mismatches: 39, Indels: 12
0.73 0.20 0.06
Matches are distributed among these distances:
17 12 0.09
18 117 0.84
19 11 0.08
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
AATAATTGACTGTTACTG
Found at i:97162503 original size:18 final size:18
Alignment explanation
Indices: 97162468--97162527 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
97162458 TGATCGATAC
* *
97162468 TGAATAACTGGTTATTAT
1 TGAATAACTGATTGTTAT
*
97162486 TGAATAATTGATTGTTAT
1 TGAATAACTGATTGTTAT
* * * *
97162504 CGAATAAGTGACTGTTAC
1 TGAATAACTGATTGTTAT
97162522 TGAATA
1 TGAATA
97162528 TATAATTGTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.40
Consensus pattern (18 bp):
TGAATAACTGATTGTTAT
Found at i:97165508 original size:22 final size:21
Alignment explanation
Indices: 97165478--97165524 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
97165468 TACAAATTAA
97165478 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
97165500 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
97165521 ATCT
1 ATCT
97165525 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:97165530 original size:19 final size:19
Alignment explanation
Indices: 97165495--97165573 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
97165485 AGATTACAAG
97165495 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
97165516 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
97165533 ATCATACCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
97165552 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
97165571 ATC
1 ATC
97165574 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 1 0.02
21 8 0.15
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:97165582 original size:36 final size:35
Alignment explanation
Indices: 97165497--97165583 Score: 115
Period size: 36 Copynumber: 2.4 Consensus size: 35
97165487 ATTACAAGAT
97165497 CATAT-CTTCAAGATTGCATATCATATCTAAGATTG
1 CATATCCTT-AAGATTGCATATCATATCTAAGATTG
*
97165532 TATCATACC-TAAGATTGCATATCATATCTAAGATTG
1 CAT-AT-CCTTAAGATTGCATATCATATCTAAGATTG
97165568 CATATCCTTAAAGATT
1 CATATCCTT-AAGATT
97165584 ATATTTCCAT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
34 2 0.04
35 5 0.11
36 36 0.80
37 1 0.02
38 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (35 bp):
CATATCCTTAAGATTGCATATCATATCTAAGATTG
Found at i:97168823 original size:7 final size:7
Alignment explanation
Indices: 97168796--97168840 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
97168786 AAATTGTTAT
97168796 TATATTA
1 TATATTA
97168803 TAT-TATA
1 TATAT-TA
97168810 TTATATTA
1 -TATATTA
97168818 TATA-T-
1 TATATTA
97168823 TATATTA
1 TATATTA
97168830 TATATTA
1 TATATTA
97168837 TATA
1 TATA
97168841 AATAAGTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
5 4 0.12
6 3 0.09
7 20 0.61
8 5 0.15
9 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TATATTA
Found at i:97168823 original size:12 final size:12
Alignment explanation
Indices: 97168796--97168839 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
97168786 AAATTGTTAT
97168796 TATATTATA-T-
1 TATATTATATTA
97168806 TATATTATATTA
1 TATATTATATTA
97168818 TATATTATATTA
1 TATATTATATTA
97168830 TATATTATAT
1 TATATTATAT
97168840 AAATAAGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 9 0.28
11 1 0.03
12 22 0.69
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATATTATATTA
Found at i:97168839 original size:5 final size:5
Alignment explanation
Indices: 97168793--97168832 Score: 62
Period size: 5 Copynumber: 7.6 Consensus size: 5
97168783 AAGAAATTGT
97168793 TATTA TATTA TATTA TATTA TATTATA TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TA-T-TA TATTA TATTA TAT
97168833 ATTATATAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 27 0.82
6 2 0.06
7 4 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:97170607 original size:45 final size:45
Alignment explanation
Indices: 97170555--97170665 Score: 143
Period size: 45 Copynumber: 2.5 Consensus size: 45
97170545 CGACTACTAT
* * *
97170555 TACTGTTACCGTTACTGTTACCGATT-TGACACTTTGTGTGTCGAA
1 TACTGTTACTGTTACTGTTACCAATTCAG-CACTTTGTGTGTCGAA
* * * *
97170600 TGCTGTTACTGTTACAGTTATCAATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACCAATTCAGCACTTTGTGTGTCGAA
97170645 TACTGTTACTGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
97170666 TGTTCCAAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 54 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACCAATTCAGCACTTTGTGTGTCGAA
Found at i:97170656 original size:6 final size:6
Alignment explanation
Indices: 97170645--97170669 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
97170635 GTGTGTTGAA
97170645 TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT T
97170670 CCAAATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:97170872 original size:18 final size:18
Alignment explanation
Indices: 97170851--97171041 Score: 127
Period size: 18 Copynumber: 10.6 Consensus size: 18
97170841 TAACTGATTA
97170851 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
**
97170869 TTACCAAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
97170887 TTACTGGATAATAGACTG
1 TTACTGAATAATTGACTG
* * *
97170905 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
97170923 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
97170941 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
* * * * *
97170959 TCACTAAATAAATAATTG
1 TTACTGAATAATTGACTG
* * *
97170977 TTACTAAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
* * *
97170996 CTATTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
*
97171013 TTACTAAATAATTGACTG
1 TTACTGAATAATTGACTG
*
97171031 TTACTGGATAA
1 TTACTGAATAA
97171042 CCGATCAATT
Statistics
Matches: 136, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
17 12 0.09
18 111 0.82
19 13 0.10
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.38
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:97170945 original size:36 final size:36
Alignment explanation
Indices: 97170839--97170955 Score: 137
Period size: 36 Copynumber: 3.2 Consensus size: 36
97170829 AAAGGTATAA
* **
97170839 AATAACTGATTATTACTGAATAATTGACTGTTACCA
1 AATAACTGAATATTACTGAATAATTGACTGTTACTG
* * * * *
97170875 AATAATTGACTGTTACTGGATAATAGACTGTTACTG
1 AATAACTGAATATTACTGAATAATTGACTGTTACTG
*
97170911 AATAACTGAATATTACTGAATAATTGA-TCATTACTG
1 AATAACTGAATATTACTGAATAATTGACT-GTTACTG
97170947 AATAACTGA
1 AATAACTGA
97170956 TTGTCACTAA
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
35 1 0.01
36 66 0.99
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (36 bp):
AATAACTGAATATTACTGAATAATTGACTGTTACTG
Found at i:97170979 original size:72 final size:72
Alignment explanation
Indices: 97170838--97170989 Score: 173
Period size: 72 Copynumber: 2.1 Consensus size: 72
97170828 TAAAGGTATA
* * * * **
97170838 AAATAACTGATTATTACTGAATAATTGACTGTTACCAAATAATTGACTGTTACTGGATAATAGAC
1 AAATAACTGAATATTACTGAATAATTGACTATTACCAAATAACTGACTGTCACTAAATAATAGAC
97170903 TGTTACT
66 TGTTACT
* ** *
97170910 GAATAACTGAATATTACTGAATAATTGA-TCATTACTGAATAACTGATTGTCACTAAATAAATA-
1 AAATAACTGAATATTACTGAATAATTGACT-ATTACCAAATAACTGACTGTCACTAAAT-AATAG
*
97170973 ATTGTTACT
64 ACTGTTACT
97170982 AAATAACT
1 AAATAACT
97170990 TAATTGCTAT
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
71 1 0.02
72 61 0.92
73 4 0.06
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.36
Consensus pattern (72 bp):
AAATAACTGAATATTACTGAATAATTGACTATTACCAAATAACTGACTGTCACTAAATAATAGAC
TGTTACT
Found at i:97171130 original size:18 final size:18
Alignment explanation
Indices: 97171079--97171134 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 18
97171069 TGGTTATTAT
*
97171079 TGAATAATTGATTGTTAC
1 TGAATAAATGATTGTTAC
* * *
97171097 CGAATAAGTGACTGTTAC
1 TGAATAAATGATTGTTAC
*
97171115 TGAATAAATAATTGTT-C
1 TGAATAAATGATTGTTAC
97171132 TGA
1 TGA
97171135 TTGTTAATAA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 4 0.13
18 27 0.87
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (18 bp):
TGAATAAATGATTGTTAC
Found at i:97174021 original size:20 final size:19
Alignment explanation
Indices: 97173989--97174026 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
97173979 CGTATACGTG
97173989 GTATTTTTGAAAAACATTT
1 GTATTTTTGAAAAACATTT
97174008 GTATTTTTGAAAAACATTT
1 GTATTTTTGAAAAACATTT
97174027 ATCTTTCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (19 bp):
GTATTTTTGAAAAACATTT
Found at i:97174037 original size:18 final size:19
Alignment explanation
Indices: 97173989--97174038 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
97173979 CGTATACGTG
*
97173989 GTATTTTTGAAAAACATTT
1 GTATTTTCGAAAAACATTT
*
97174008 GTATTTTTGAAAAACA-TT
1 GTATTTTCGAAAAACATTT
97174026 -TATCTTTCGAAAA
1 GTAT-TTTCGAAAA
97174039 CCCGTGCCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 3 0.10
18 10 0.34
19 16 0.55
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (19 bp):
GTATTTTCGAAAAACATTT
Found at i:97175669 original size:27 final size:27
Alignment explanation
Indices: 97175639--97175703 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
97175629 ATTACCAAAG
* * *
97175639 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
97175666 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
97175693 TACCCTCGATT
1 TACCCTCGATT
97175704 ATGAAATTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:97175765 original size:27 final size:27
Alignment explanation
Indices: 97175735--97175912 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
97175725 TGTAGGATAG
* * *
97175735 AATTACCAAAACACCCCTATTTTGCAA
1 AATTACCAAAATACCCCTAGTTTGTAA
97175762 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
97175789 AATTACCAAAATATCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
** * * *
97175816 AATTACTGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
97175843 AATTATCGAAATA-CCTTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
97175870 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
97175897 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
97175913 TCGACTTTCT
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 4 0.03
27 119 0.94
28 3 0.02
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:97175839 original size:54 final size:54
Alignment explanation
Indices: 97175707--97175967 Score: 172
Period size: 54 Copynumber: 4.8 Consensus size: 54
97175697 CTCGATTATG
** * * * *
97175707 AAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAACACCC-CTATTTTGCA
1 AAATTACTGAAATACCCCTAGTTTG-TAAAATTACCAAAATACCCTC-AATTTGTA
** *
97175761 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATATCCCT-AGTTTGTA
1 AAATTACTGAAATACCCCTAGTTTGTAAAATTACCAAAATA-CCCTCAATTTGTA
* * * * * *
97175815 AAATTACTGAAATACCACTGGTTTGTGAAATTATCGAAATACCTTCAATTTGTA
1 AAATTACTGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTA
** * ** * *
97175869 AAATTACCAAAATACCCCTAATTTACAAAATTA-CAGAAATACCCTCGACTTTCTAA
1 AAATTACTGAAATACCCCTAGTTTGTAAAATTACCA-AAATACCCTC-AATTTGT-A
* * ** **
97175925 AAATTA-TAGAAATACCACTGGTTTACAAAATTACTGAAATACC
1 AAATTACT-GAAATACCCCTAGTTTGTAAAATTACCAAAATACC
97175968 ATTGGTTTGT
Statistics
Matches: 162, Mismatches: 36, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
53 4 0.02
54 112 0.69
55 11 0.07
56 35 0.22
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACTGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTA
Found at i:97175963 original size:27 final size:27
Alignment explanation
Indices: 97175814--97175975 Score: 82
Period size: 27 Copynumber: 5.9 Consensus size: 27
97175804 CCTAGTTTGT
**
97175814 AAAATTACTGAAATACCACTGGTTTGT
1 AAAATTACTGAAATACCACTGGTTTAC
* * ** **
97175841 GAAATTA-TCGAAATACC-TTCAATTTGT
1 AAAATTACT-GAAATACCACT-GGTTTAC
** * **
97175868 AAAATTACCAAAATACCCCTAATTTAC
1 AAAATTACTGAAATACCACTGGTTTAC
* *
97175895 AAAATTACAGAAATACC-CTCGACTTT-C
1 AAAATTACTGAAATACCACT-G-GTTTAC
97175922 TAAAAATTA-TAGAAATACCACTGGTTTAC
1 --AAAATTACT-GAAATACCACTGGTTTAC
*
97175951 AAAATTACTGAAATACCATTGGTTT
1 AAAATTACTGAAATACCACTGGTTT
97175976 GTAGATTTAC
Statistics
Matches: 106, Mismatches: 17, Indels: 24
0.72 0.12 0.16
Matches are distributed among these distances:
26 4 0.04
27 75 0.71
28 8 0.08
29 17 0.16
30 2 0.02
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCACTGGTTTAC
Found at i:97176983 original size:24 final size:24
Alignment explanation
Indices: 97176900--97176983 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
97176890 GAGGGAGTGC
* * *
97176900 TAAAAGGGCTCTACCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
97176925 AAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
97176949 TAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
97176973 TAAAAGAGGCT
1 TAAAAG-GGCT
97176984 AGGCCTCTAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 11 0.21
25 37 0.71
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:97177177 original size:42 final size:42
Alignment explanation
Indices: 97177118--97177209 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
97177108 TAGTCTCCCC
**
97177118 AAATGGGCTTACATACATTTATTGACATTACATGTGATATTG
1 AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
97177160 AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
97177202 AAATGGGC
1 AAATGGGC
97177210 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
Found at i:97177268 original size:31 final size:30
Alignment explanation
Indices: 97177233--97177348 Score: 189
Period size: 31 Copynumber: 3.8 Consensus size: 30
97177223 CGTTTACAGT
97177233 AAAGGCTTCGGCCCAGTGATATAGTTTATGA
1 AAAGGCTTCGGCCCAGTGATAT-GTTTATGA
97177264 AAAGGCTTCGGCCCAGTGATATGGTTTATGA
1 AAAGGCTTCGGCCCAGTGATAT-GTTTATGA
*
97177295 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATG-TTTATGA
97177326 AAAGGCTTCGGCCCAGT-ATATGT
1 AAAGGCTTCGGCCCAGTGATATGT
97177349 CAAGACTAAA
Statistics
Matches: 82, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
29 1 0.01
30 6 0.07
31 75 0.91
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGATATGTTTATGA
Found at i:97179659 original size:27 final size:27
Alignment explanation
Indices: 97179629--97179720 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
97179619 ATTACCAAAG
* *
97179629 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
97179656 TACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
97179683 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTATAAAATTACCGTTT
97179710 TACCCTCGATT
1 TACCCTCGATT
97179721 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGTTT
Found at i:97179675 original size:54 final size:54
Alignment explanation
Indices: 97179617--97179720 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
97179607 TCGACTTGTT
* * * *
97179617 AAATTACCAAAGTACCCTC-GATTTATAGAATTATCGTTTTACCCTTGATTTATA
1 AAATTACCAAAGTACCCTCAG-TTTACAAAATTACCGTTTTACCCTCGATTTATA
***
97179671 AAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTTTACCCTCGATT
1 AAATTACCAAAGTACCCTCAGTTTACAAAATTACCGTTTTACCCTCGATT
97179721 GTGAAATTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 41 0.98
55 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (54 bp):
AAATTACCAAAGTACCCTCAGTTTACAAAATTACCGTTTTACCCTCGATTTATA
Found at i:97179782 original size:27 final size:27
Alignment explanation
Indices: 97179752--97179929 Score: 225
Period size: 27 Copynumber: 6.6 Consensus size: 27
97179742 TGTAGGATAG
*
97179752 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
97179779 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
97179806 AATTACCAAAATATCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* * ** *
97179833 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
97179860 AATTACTAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
**
97179887 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
97179914 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
97179930 TTGACTTTCT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.04
27 122 0.93
28 4 0.03
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:97179845 original size:81 final size:81
Alignment explanation
Indices: 97179752--97179929 Score: 250
Period size: 81 Copynumber: 2.2 Consensus size: 81
97179742 TGTAGGATAG
*
97179752 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTAATTTGTAAAATTACCAAA
1 AATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAA
* * **
97179816 ATATCCCTAGTTTGTAA
65 ATACCCCTAATTTACAA
* * * *
97179833 AATTACCGAAATACCACTGGTTTGTGAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAA
1 AATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
97179898 TACCCCTAATTTACAA
66 TACCCCTAATTTACAA
*
97179914 AATTACAGAAATACCC
1 AATTACCGAAATACCC
97179930 TTGACTTTCT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 84 0.99
82 1 0.01
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (81 bp):
AATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
TACCCCTAATTTACAA
Found at i:97179980 original size:27 final size:27
Alignment explanation
Indices: 97179907--97179992 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
97179897 ATACCCCTAA
* * *
97179907 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCATTG-G
*
97179935 TTT-CTAAAAATTATAGAAATACTATTGG
1 TTTAC--AAAATTATAGAAATACCATTGG
*
97179963 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCATTGG
97179990 TTT
1 TTT
97179993 GTAGATTTAC
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
27 22 0.46
28 7 0.15
29 19 0.40
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCATTGG
Found at i:97180953 original size:25 final size:25
Alignment explanation
Indices: 97180920--97180989 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
97180910 AAGGAGTGCT
* *
97180920 AAAAGGGCTCTACCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
**
97180945 AAAAGGGCTTTGCCCCAGTTTATTA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
97180970 GAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
97180990 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:97181002 original size:24 final size:23
Alignment explanation
Indices: 97180945--97181016 Score: 90
Period size: 25 Copynumber: 3.0 Consensus size: 23
97180935 CAGTTTACCA
97180945 AAAAGGGCTTTGCCCCAGTTTATT
1 AAAAGGGCTTTGCCCCAG-TTATT
97180969 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATT
**
97180993 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
97181017 ATGATAAAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 4 0.09
24 14 0.33
25 25 0.58
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATT
Found at i:97181196 original size:42 final size:42
Alignment explanation
Indices: 97181137--97181270 Score: 250
Period size: 42 Copynumber: 3.2 Consensus size: 42
97181127 TAGTCTCCCC
97181137 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
97181179 AAATGGGCTTGCATACATTCATTGACATTACATATGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
97181221 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
97181263 AAATGGGC
1 AAATGGGC
97181271 CTAAGGGCCA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:97181329 original size:31 final size:31
Alignment explanation
Indices: 97181294--97181439 Score: 240
Period size: 31 Copynumber: 4.7 Consensus size: 31
97181284 CGTTTACAGT
* *
97181294 AAAGGCTTCGGCCAAGTGATATGGTTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
**
97181325 AAAGGCTTTAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
97181356 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
97181387 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
97181418 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
97181440 TCAAGACTAA
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.05
31 103 0.95
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:97182368 original size:27 final size:27
Alignment explanation
Indices: 97182338--97182493 Score: 91
Period size: 27 Copynumber: 5.8 Consensus size: 27
97182328 GGCAAAACAG
*
97182338 TCATCTTACCATATAAGGGAAAAATAA
1 TCATTTTACCATATAAGGGAAAAATAA
* * *
97182365 TCATTTTACC-TCACAAGGGCAAAACAA
1 TCATTTTACCAT-ATAAGGGAAAAATAA
** *
97182392 TCATTTTACCACGTAAGGGAAAAATAG
1 TCATTTTACCATATAAGGGAAAAATAA
* * * * * * * * *
97182419 TTATTTAATCACACAGGGGTAATACAA
1 TCATTTTACCATATAAGGGAAAAATAA
* * * *
97182446 TCATTTTACCACA-AAGAGACAAAACAG
1 TCATTTTACCATATAAGGGA-AAAATAA
*
97182473 TCATTTTACCACATAAGGGAA
1 TCATTTTACCATATAAGGGAA
97182494 GTCATTCCAT
Statistics
Matches: 96, Mismatches: 29, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
26 4 0.04
27 87 0.91
28 5 0.05
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (27 bp):
TCATTTTACCATATAAGGGAAAAATAA
Found at i:97182446 original size:54 final size:54
Alignment explanation
Indices: 97182327--97182457 Score: 154
Period size: 54 Copynumber: 2.4 Consensus size: 54
97182317 CATTACATAG
* * ** * *
97182327 GGGCAAAACAGTCATCTTACCATATAAGGGAAAAATAATCATTTTACCTCACAA
1 GGGCAAAACAATCATTTTACCACGTAAGGGAAAAATAATCATTTAACCACACAA
* * * *
97182381 GGGCAAAACAATCATTTTACCACGTAAGGGAAAAATAGTTATTTAATCACACAG
1 GGGCAAAACAATCATTTTACCACGTAAGGGAAAAATAATCATTTAACCACACAA
* *
97182435 GGGTAATACAATCATTTTACCAC
1 GGGCAAAACAATCATTTTACCAC
97182458 AAAGAGACAA
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (54 bp):
GGGCAAAACAATCATTTTACCACGTAAGGGAAAAATAATCATTTAACCACACAA
Found at i:97190679 original size:20 final size:20
Alignment explanation
Indices: 97190643--97190681 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
97190633 CTAAGTTCTT
97190643 AATTCTATTTGAATTAGTCA
1 AATTCTATTTGAATTAGTCA
*
97190663 AATT-TATTATGATTTAGTC
1 AATTCTATT-TGAATTAGTC
97190682 CTTTGTCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (20 bp):
AATTCTATTTGAATTAGTCA
Found at i:97198019 original size:17 final size:18
Alignment explanation
Indices: 97198006--97198163 Score: 91
Period size: 18 Copynumber: 8.8 Consensus size: 18
97197996 TAATCTTCAA
97198006 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
97198025 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
97198042 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
* *
97198061 TGAT-TGTAATCTTAGATA
1 TGATATGCAATCTTAGA-G
*
97198079 TGAT-TGCAATATTAGA-
1 TGATATGCAATCTTAGAG
* *
97198095 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
97198114 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
97198130 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
*
97198149 TGATATACAATCTTA
1 TGATATGCAATCTTA
97198164 AAAGATATGA
Statistics
Matches: 116, Mismatches: 9, Indels: 28
0.76 0.06 0.18
Matches are distributed among these distances:
15 4 0.03
16 4 0.03
17 34 0.29
18 37 0.32
19 31 0.27
20 6 0.05
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:97198045 original size:14 final size:15
Alignment explanation
Indices: 97198026--97198151 Score: 92
Period size: 18 Copynumber: 7.5 Consensus size: 15
97198016 TCTTAGATGT
97198026 GATATG-CAATCTTA
1 GATATGACAATCTTA
97198040 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
*
97198057 GATATGATTGTAATCTTA
1 GATATGA---CAATCTTA
*
97198075 GATATGATTGCAATATTA
1 GATATGA---CAATCTTA
97198093 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
97198110 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
97198128 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
97198145 GATATGA
1 GATATGA
97198152 TATACAATCT
Statistics
Matches: 95, Mismatches: 4, Indels: 25
0.77 0.03 0.20
Matches are distributed among these distances:
14 6 0.06
15 3 0.03
17 41 0.43
18 43 0.45
20 2 0.02
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:97198078 original size:35 final size:35
Alignment explanation
Indices: 97198013--97198163 Score: 205
Period size: 35 Copynumber: 4.2 Consensus size: 35
97198003 CAATGATATG
*
97198013 CAATCTTAGATGTGATATGCAATCTTAGATATGA-TA
1 CAATCTTAGATATGATA--CAATCTTAGATATGATTA
** *
97198049 CAATCTTAGATATGATTGTAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TACAATCTTAGATATGATTA
* *
97198085 CAATATTAGATATGATACAATCTTAGATATGATTG
1 CAATCTTAGATATGATACAATCTTAGATATGATTA
97198120 CAATCTTAGATATGATACAATCTTAGATATGATATA
1 CAATCTTAGATATGATACAATCTTAGATATGAT-TA
97198156 CAATCTTA
1 CAATCTTA
97198164 AAAGATATGA
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
35 64 0.62
36 38 0.37
37 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (35 bp):
CAATCTTAGATATGATACAATCTTAGATATGATTA
Found at i:97198087 original size:53 final size:53
Alignment explanation
Indices: 97198005--97198163 Score: 239
Period size: 53 Copynumber: 2.9 Consensus size: 53
97197995 ATAATCTTCA
*
97198005 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
* *
97198060 ATGATTGTAATCTTAGATATGATTGCAATATTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
97198113 ATGATTGCAATCTTAGATATGA-TACAATCTTAGATATGATATACAATCTTA
1 ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATG--ATACAATCTTA
97198164 AAAGATATGA
Statistics
Matches: 96, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
52 14 0.15
53 50 0.52
54 27 0.28
55 5 0.05
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (53 bp):
ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:97198170 original size:17 final size:19
Alignment explanation
Indices: 97198007--97198171 Score: 109
Period size: 17 Copynumber: 9.3 Consensus size: 19
97197997 AATCTTCAAT
* **
97198007 GATATGCAATCTTAGATGT
1 GATATACAATCTTAGATAA
* *
97198026 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAA
*
97198045 G--ATACAATCTTAGATAT
1 GATATACAATCTTAGATAA
** *
97198062 GAT-TGTAATCTTAGATAT
1 GATATACAATCTTAGATAA
* * *
97198080 GAT-TGCAATATTAGATAT
1 GATATACAATCTTAGATAA
*
97198098 G--ATACAATCTTAGATAT
1 GATATACAATCTTAGATAA
* *
97198115 GAT-TGCAATCTTAGATAT
1 GATATACAATCTTAGATAA
*
97198133 G--ATACAATCTTAGATAT
1 GATATACAATCTTAGATAA
97198150 GATATACAATCTTA-A-AA
1 GATATACAATCTTAGATAA
97198167 GATAT
1 GATAT
97198172 GATTTTGTAA
Statistics
Matches: 127, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
17 51 0.40
18 46 0.36
19 30 0.24
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATACAATCTTAGATAA
Found at i:97203926 original size:16 final size:17
Alignment explanation
Indices: 97203903--97203947 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
97203893 CTTCTATTTC
*
97203903 AAAAGAAAAAAAAA-AG
1 AAAAGAAAAAAAAAGAA
*
97203919 AGAAGAAAAAAAAAGAA
1 AAAAGAAAAAAAAAGAA
97203936 AAAAGAAAAAAA
1 AAAAGAAAAAAA
97203948 TAAAAATGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 13 0.52
17 12 0.48
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAAAAAGAA
Found at i:97203929 original size:15 final size:13
Alignment explanation
Indices: 97203903--97203946 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
97203893 CTTCTATTTC
97203903 AAAAGAAAAAAAA
1 AAAAGAAAAAAAA
* *
97203916 AAGAGAAGAAAAA
1 AAAAGAAAAAAAA
97203929 AAAAGAAAAAAGAA
1 AAAAGAAAAAA-AA
97203943 AAAA
1 AAAA
97203947 ATAAAAATGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 20 0.77
14 6 0.23
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAA
Found at i:97203937 original size:20 final size:18
Alignment explanation
Indices: 97203903--97203953 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
97203893 CTTCTATTTC
* *
97203903 AAAAGAAAAAAAAAAGAG
1 AAAAAAAAAAAAAAAAAG
97203921 AAGAAAAAAAAAGAAAAAAG
1 AA-AAAAAAAAA-AAAAAAG
97203941 AAAAAAATAAAAA
1 AAAAAAA-AAAAA
97203954 TGGAGAGGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 2 0.07
19 14 0.50
20 12 0.43
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (18 bp):
AAAAAAAAAAAAAAAAAG
Found at i:97203937 original size:22 final size:19
Alignment explanation
Indices: 97203903--97203953 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
97203893 CTTCTATTTC
* *
97203903 AAAAGAAAAAAAAAAGAGA
1 AAAAAAAAAAAAAAAAAGA
*
97203922 AGAAAAAAAAAGAAAAAAGA
1 A-AAAAAAAAAAAAAAAAGA
97203942 AAAAAATAAAAA
1 AAAAAA-AAAAA
97203954 TGGAGAGGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (19 bp):
AAAAAAAAAAAAAAAAAGA
Found at i:97203947 original size:15 final size:14
Alignment explanation
Indices: 97203908--97203953 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
97203898 ATTTCAAAAG
97203908 AAAAAAAAAAGAGAA
1 AAAAAAAAAAGA-AA
*
97203923 GAAAAAAAAAGAAA
1 AAAAAAAAAAGAAA
*
97203937 AAAGAAAAAAATAAA
1 AAA-AAAAAAAGAAA
97203952 AA
1 AA
97203954 TGGAGAGGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (14 bp):
AAAAAAAAAAGAAA
Found at i:97203953 original size:16 final size:15
Alignment explanation
Indices: 97203903--97203953 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 15
97203893 CTTCTATTTC
97203903 AAAAGAAAAAAAAAA
1 AAAAGAAAAAAAAAA
*
97203918 GAGAAGAAAAAAAAAGAA
1 -AAAAG-AAAAAAAA-AA
*
97203936 AAAAGAAAAAAATAA
1 AAAAGAAAAAAAAAA
97203951 AAA
1 AAA
97203954 TGGAGAGGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 5 0.17
16 11 0.37
17 12 0.40
18 2 0.07
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (15 bp):
AAAAGAAAAAAAAAA
Found at i:97204960 original size:44 final size:44
Alignment explanation
Indices: 97204910--97205045 Score: 118
Period size: 44 Copynumber: 3.2 Consensus size: 44
97204900 CACTTTAATC
97204910 CCCTAAGCAGTGGGGTAACAGGTTAAATTTGCAGATCTTATTCT
1 CCCTAAGCAGTGGGGTAACAGGTTAAATTTGCAGATCTTATTCT
* * * * ** *** * * *
97204954 CCCTAAGCAATAGTGG-AGCAGATCGAA-GACCCG-CCTTAATC-
1 CCCTAAGCAGT-GGGGTAACAGGTTAAATTTGCAGATCTTATTCT
*
97204995 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCT
1 CCCTAAGCAGTGGGGTAACAGGTTAAATTTGCAGATCTTATTCT
97205039 CCCTAAG
1 CCCTAAG
97205046 AAGTAGTGGA
Statistics
Matches: 62, Mismatches: 25, Indels: 10
0.64 0.26 0.10
Matches are distributed among these distances:
40 2 0.03
41 17 0.27
42 8 0.13
43 8 0.13
44 24 0.39
45 3 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (44 bp):
CCCTAAGCAGTGGGGTAACAGGTTAAATTTGCAGATCTTATTCT
Found at i:97205011 original size:85 final size:84
Alignment explanation
Indices: 97204904--97205272 Score: 484
Period size: 85 Copynumber: 4.4 Consensus size: 84
97204894 ATTCAGCACT
*
97204904 TTAATCCCCTAAGCAGTGGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAATAGTG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA-TCTCCCTAAGCAATAGTG
*
97204969 GAGCAGATCGAAGACCCGCC
65 GAGCAGATCGAAGACTCGCC
97204989 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAG-AAGTAGT
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA-TCTCCCTAAGCAA-TAGT
97205053 GGAGCAGATCGAAGACTCGCC
64 GGAGCAGATCGAAGACTCGCC
* * * * * *
97205074 TTAATCTCCTAAGCAGTAGGGTAAC-----AAGTTCGCAGATATTATCTCCCTAAGCAGTAGCGG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAATAGTGG
97205134 AGCAGATCGATGACGACTCGCC
66 AGCAGATCGA--A-GACTCGCC
* * * *
97205156 TTAATCCCCTAAGCAGTAGGGTAACAGGTCAAAATTGCGGATCTTATCTCCCTAAGCAGTAGTGG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAATAGTGG
* *
97205221 AGTAGATCGAAGA-TGTGCC
66 AGCAGATCGAAGACT-CGCC
97205240 TTAA-CCCCTTAAGCAGTAGGGTAACAGGTTAAA
1 TTAATCCCC-TAAGCAGTAGGGTAACAGGTTAAA
97205273 GTATAGCATA
Statistics
Matches: 254, Mismatches: 18, Indels: 25
0.86 0.06 0.08
Matches are distributed among these distances:
79 25 0.10
80 14 0.06
81 1 0.00
82 32 0.13
83 5 0.02
84 34 0.13
85 105 0.41
87 38 0.15
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (84 bp):
TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAATAGTGG
AGCAGATCGAAGACTCGCC
Found at i:97205255 original size:166 final size:165
Alignment explanation
Indices: 97204904--97205265 Score: 480
Period size: 166 Copynumber: 2.2 Consensus size: 165
97204894 ATTCAGCACT
* * * * *
97204904 TTAATCCCCTAAGCAGTGGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAATAGTG
1 TTAATCCCCTAAGCAGTAGGGTAAC-----AAGTTCGCAGATATTATTCTCCCTAAGCAATAGCG
* *
97204969 GAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTT
61 GAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTCAAAATTGCAGATCTT
97205034 ATTCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACTCGCC
126 ATTCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACTCGCC
* *
97205074 TTAATCTCCTAAGCAGTAGGGTAACAAGTTCGCAGATATTA-TCTCCCTAAGCAGTAGCGGAGCA
1 TTAATCCCCTAAGCAGTAGGGTAACAAGTTCGCAGATATTATTCTCCCTAAGCAATAGCGGAGCA
* *
97205138 GATCGATGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTCAAAATTGCGGATCTTA-
66 GATCGA--A-GACCCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTCAAAATTGCAGATCTTAT
* * *
97205202 TCTCCCTAAGCAGTAGTGGAGTAGATCGAAGA-TGTGCC
128 TCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACT-CGCC
97205240 TTAA-CCCCTTAAGCAGTAGGGTAACA
1 TTAATCCCC-TAAGCAGTAGGGTAACA
97205266 GGTTAAAGTA
Statistics
Matches: 172, Mismatches: 15, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
164 27 0.16
165 17 0.10
166 55 0.32
167 50 0.29
170 23 0.13
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (165 bp):
TTAATCCCCTAAGCAGTAGGGTAACAAGTTCGCAGATATTATTCTCCCTAAGCAATAGCGGAGCA
GATCGAAGACCCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTCAAAATTGCAGATCTTATTCT
CCCTAAGAAGTAGTGGAGCAGATCGAAGACTCGCC
Found at i:97205752 original size:207 final size:206
Alignment explanation
Indices: 97205397--97206110 Score: 1122
Period size: 207 Copynumber: 3.5 Consensus size: 206
97205387 TAGAAAGCAG
* * * *
97205397 ATCGAAGACATAGCTAATTTAGCTTTCACGTGCTTATGATGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCA
*
97205462 TCTTTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
*
97205527 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGTAAAATCCAAGATGGTTTGGTATCCTTGTGCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAG-AAGATCCAAGATGGTTTGGTATCCTTGTGCT
97205592 TACAAGGAACAA
195 TACAAGGAACAA
* * *
97205604 ATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* * * * *
97205669 TCTCTGTATTGTCAGAGAACAAATCCAAGTTTGGCGTCTCCATATTCAATGGAGGGTAGGCACAT
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
*
97205734 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAG-AAGATCCAAGATGGTTTGGTATCCTTGTGCT
97205799 TACAAGGAACAA
195 TACAAGGAACAA
* * *
97205811 ATCGAAGACATAGCTGATTTGGATTTCACGTGCTTACGTTGAAGCAAGTATAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* * * **
97205876 TCTCTGTATTTTCAGAGAGCAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGACAGACTTAT
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
** * *
97205941 AGCAGATCTAACCTTCAGATGTTTAGACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGAAGATCCAAGATGGTTTGGTATCCTTGTGCTT
*
97206006 ACAAGGAGCAA
196 ACAAGGAACAA
* *
97206017 ATCGAAGACATAGCTGATTTGGCTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* *
97206082 TCTCTGTATTGTCAGGGAACAAATTGAAG
66 TCTCTGTATTGTCAGAGAACAAATCGAAG
97206111 AAGCAGATTT
Statistics
Matches: 462, Mismatches: 45, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
206 125 0.27
207 337 0.73
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (206 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
AGCAGATCTGGCCTTCAGATGTTTATACTGAAGAAGATCCAAGATGGTTTGGTATCCTTGTGCTT
ACAAGGAACAA
Done.