Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 296 of 343
Found at i:97206542 original size:18 final size:18
Alignment explanation
Indices: 97206475--97206616 Score: 198
Period size: 18 Copynumber: 7.8 Consensus size: 18
97206465 ATAATCTTCA
97206475 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
97206494 GTGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
97206513 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
97206530 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
97206548 GTGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
97206566 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
97206583 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
97206601 ATGATATACAATCTTA
1 ATGAT-TGCAATCTTA
97206617 AAAGATAGGA
Statistics
Matches: 111, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
17 32 0.29
18 49 0.44
19 30 0.27
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.37
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:97206545 original size:35 final size:37
Alignment explanation
Indices: 97206475--97206616 Score: 202
Period size: 35 Copynumber: 3.9 Consensus size: 37
97206465 ATAATCTTCA
* *
97206475 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATATACAATCTTAGAT
* *
97206513 ATGA-TACAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATACAATCTTAGAT
*
97206548 GTGATTGCAATCTTAGATATG--ATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATACAATCTTAGAT
97206583 ATGATTGCAATCTTAGATATGATATACAATCTTA
1 ATGATTGCAATCTTAGATATGATATACAATCTTA
97206617 AAAGATAGGA
Statistics
Matches: 94, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
35 48 0.51
36 31 0.33
37 11 0.12
38 4 0.04
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.37
Consensus pattern (37 bp):
ATGATTGCAATCTTAGATATGATATACAATCTTAGAT
Found at i:97206562 original size:53 final size:54
Alignment explanation
Indices: 97206475--97206616 Score: 250
Period size: 53 Copynumber: 2.6 Consensus size: 54
97206465 ATAATCTTCA
97206475 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATGTGATATGCAATCTTAGATATGATACAATCTTAGAT
97206530 ATGATTGCAATCTTAGATGTGAT-TGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATGTGATATGCAATCTTAGATATGATACAATCTTAGAT
* *
97206583 ATGATTGCAATCTTAGATATGATATACAATCTTA
1 ATGATTGCAATCTTAGATGTGATATGCAATCTTA
97206617 AAAGATAGGA
Statistics
Matches: 84, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
53 52 0.62
54 27 0.32
55 5 0.06
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.37
Consensus pattern (54 bp):
ATGATTGCAATCTTAGATGTGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:97215734 original size:49 final size:48
Alignment explanation
Indices: 97215702--97215795 Score: 136
Period size: 49 Copynumber: 1.9 Consensus size: 48
97215692 TTAACATTTC
97215702 ATATTTAAAATATATTTTTTAA-ACAGAATAAAAAATTAAATTAAATTAA
1 ATATTTAAAATATA-TTTTTAATACAGAATAAAAAA-TAAATTAAATTAA
* *
97215751 ATATTTAAAATATATTTTTAATATAGAATAAAAAATTTAATTAAA
1 ATATTTAAAATATATTTTTAATACAGAATAAAAAA-TAAATTAAA
97215796 GACAAATAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
48 7 0.17
49 35 0.83
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.40
Consensus pattern (48 bp):
ATATTTAAAATATATTTTTAATACAGAATAAAAAATAAATTAAATTAA
Found at i:97218253 original size:19 final size:22
Alignment explanation
Indices: 97218214--97218253 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
97218204 AGAAACCCAA
97218214 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
97218236 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
97218254 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:97218377 original size:27 final size:26
Alignment explanation
Indices: 97218315--97218452 Score: 150
Period size: 27 Copynumber: 5.1 Consensus size: 26
97218305 AGCATGGCTG
* *
97218315 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
97218341 CCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
97218369 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
97218396 CCAGATCAGATATTTGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
97218423 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
97218450 CCA
1 CCA
97218453 AAACGCTTCC
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.04
27 80 0.80
28 16 0.16
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:97218379 original size:54 final size:54
Alignment explanation
Indices: 97218315--97218454 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
97218305 AGCATGGCTG
*
97218315 CCAGAACAGATA-ATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAAT-CAGATAATCGTGGCAGAGCCA
* * * * *
97218369 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGTAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
* * * *
97218423 CCAGATCAGATATTTGTGGCATAGCCACCAAA
1 CCAGAACAGATATATGTGACAGAGCCACCAAA
97218455 ACGCTTCCTC
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 58 0.77
55 17 0.23
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
Found at i:97220107 original size:26 final size:26
Alignment explanation
Indices: 97220071--97220229 Score: 252
Period size: 26 Copynumber: 6.2 Consensus size: 26
97220061 CATGAAATTC
*
97220071 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
97220097 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
97220123 TTATCATGGAACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCCA
*
97220148 TTATCATGGAACATTTACCTAA-CTA
1 TTATCATGGAACATTTACCTAACCCA
*
97220173 TTATCAT-GAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
97220198 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
97220224 TTATCA
1 TTATCA
97220230 ATTTGTATCA
Statistics
Matches: 129, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
24 14 0.11
25 44 0.34
26 71 0.55
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:97224162 original size:19 final size:21
Alignment explanation
Indices: 97224108--97224162 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
97224098 CCAACCATAT
*
97224108 CCAACCGTATACACCCCTGTA
1 CCAACCGTATACACCCCCGTA
97224129 CCAACCGTATACACCCCCGTA
1 CCAACCGTATACACCCCCGTA
97224150 CCAACC-T-TACACC
1 CCAACCGTATACACC
97224163 GTGTGGGGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 6 0.18
20 1 0.03
21 26 0.79
ACGTcount: A:0.29, C:0.47, G:0.07, T:0.16
Consensus pattern (21 bp):
CCAACCGTATACACCCCCGTA
Found at i:97224283 original size:54 final size:54
Alignment explanation
Indices: 97224224--97224363 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
97224214 AGCATGGCTG
*
97224224 CCAGAACAGATA-ATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAAT-CAGATAATCGTGGCAGAGCCA
* * * * *
97224278 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGTAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
* * * *
97224332 CCAGATCAGATATTTGTGGCATAGCCACCAAA
1 CCAGAACAGATATATGTGACAGAGCCACCAAA
97224364 ACGCTTCCTC
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 58 0.77
55 17 0.23
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
Found at i:97224286 original size:27 final size:26
Alignment explanation
Indices: 97224224--97224361 Score: 150
Period size: 27 Copynumber: 5.1 Consensus size: 26
97224214 AGCATGGCTG
* *
97224224 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
97224250 CCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
97224278 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
97224305 CCAGATCAGATATTTGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
97224332 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
97224359 CCA
1 CCA
97224362 AAACGCTTCC
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.04
27 80 0.80
28 16 0.16
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:97226019 original size:26 final size:26
Alignment explanation
Indices: 97225983--97226092 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
97225973 CATGAAATTC
97225983 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
97226009 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
97226035 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
97226061 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
97226087 TTATCA
1 TTATCA
97226093 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:97248143 original size:38 final size:39
Alignment explanation
Indices: 97248052--97248145 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 39
97248042 CGGTAGCTTT
* * * *
97248052 TGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCTATACT
1 TGGTGTGTAGGGTTGGATGAGTCGATTTTATCCC-ACACA
97248092 TGGTGTGTAGGGTTGGATGAGTCGATTTTATCCC-CACA
1 TGGTGTGTAGGGTTGGATGAGTCGATTTTATCCCACACA
*
97248130 TGGTGTGTTGGGTTGG
1 TGGTGTGTAGGGTTGG
97248146 TCGAAGATGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
38 17 0.35
40 32 0.65
ACGTcount: A:0.14, C:0.11, G:0.36, T:0.39
Consensus pattern (39 bp):
TGGTGTGTAGGGTTGGATGAGTCGATTTTATCCCACACA
Found at i:97249592 original size:13 final size:13
Alignment explanation
Indices: 97249574--97249607 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
97249564 TAAGTAAATG
97249574 TTATTATATTATA
1 TTATTATATTATA
97249587 TTATTATATTATA
1 TTATTATATTATA
*
97249600 ATATTATA
1 TTATTATA
97249608 ATGAAACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:97249683 original size:6 final size:6
Alignment explanation
Indices: 97249674--97249700 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
97249664 GGAAGGGGAG
97249674 AAAGAA AAAGAA AAAGAA AAAGAA AAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAA
97249701 TTAGAGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:97257470 original size:8 final size:8
Alignment explanation
Indices: 97257459--97257497 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
97257449 GGTAAAAAAA
97257459 TTTATTTT
1 TTTATTTT
97257467 TTTATTTT
1 TTTATTTT
97257475 TTTATTTCT
1 TTTATTT-T
*
97257484 TGTATTTT
1 TTTATTTT
*
97257492 TATATT
1 TTTATT
97257498 ATACTTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (8 bp):
TTTATTTT
Found at i:97257491 original size:17 final size:16
Alignment explanation
Indices: 97257459--97257497 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
97257449 GGTAAAAAAA
*
97257459 TTTATTTTTTTATTTT
1 TTTATTTTTGTATTTT
97257475 TTTATTTCTTGTATTTT
1 TTTATTT-TTGTATTTT
*
97257492 TATATT
1 TTTATT
97257498 ATACTTTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (16 bp):
TTTATTTTTGTATTTT
Found at i:97258950 original size:72 final size:72
Alignment explanation
Indices: 97258711--97258966 Score: 395
Period size: 72 Copynumber: 3.5 Consensus size: 72
97258701 ACATGTGAAC
* * *
97258711 TGAGGCTCAACTCACTTTTTCGCAATATGATGTTGATTTTTTTGACAACAGAAATTGAAATTACC
1 TGAGGCTCAACTCA-TTTCTCGCAATATGA-GTTGA--ATTTTGAAAACAGAAATTGAAATTACC
* *
97258776 TCAGCGGTGTCC
62 TCAAC-GTGTCT
*
97258788 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
97258853 ACGTGTCT
65 ACGTGTCT
97258861 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
*
97258926 TGTGTCT
66 CGTGTCT
97258933 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
97258967 TTCTTTCAAA
Statistics
Matches: 170, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
72 60 0.35
73 57 0.34
74 20 0.12
75 5 0.03
76 14 0.08
77 14 0.08
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCT
Found at i:97259048 original size:88 final size:87
Alignment explanation
Indices: 97258899--97259144 Score: 289
Period size: 88 Copynumber: 2.8 Consensus size: 87
97258889 AGTTGAATTT
* ** * **
97258899 TGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
97258964 TGA-TTCTTTCAAAAACATAATAA
66 TGATTTCTTTCAAAAACA-AA-AA
* *
97258987 TGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
97259052 TGATTTTTTTGAGAAACAGAAA
66 TGATTTCTTTCAAAAACAAAAA
* **
97259074 TCAAAAGGC-TTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAA--CAGAAATTGAAAATACCTC-G-GTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
97259138 GAGTTGA
62 GAGTTGA
97259145 AAATTAAAAT
Statistics
Matches: 136, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
87 7 0.05
88 75 0.55
89 13 0.10
90 41 0.30
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (87 bp):
TGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTCTTTCAAAAACAAAAA
Found at i:97259308 original size:72 final size:72
Alignment explanation
Indices: 97259215--97259516 Score: 437
Period size: 72 Copynumber: 4.2 Consensus size: 72
97259205 TTTTTTTTTT
* * * *
97259215 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATAAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA
97259280 ATTTTGA
66 ATTTTGA
97259287 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA
97259352 ATTTTGA
66 ATTTTGA
*
97259359 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA
*
97259424 TTTTTTTGTA
66 --ATTTTG-A
* * ** *
97259434 CAACAGAAATTGAAATTACCTCAGCGTGTCCTGGGGCTCAACTCACCTCTAC-CAATATGAGTTG
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCT-CGCAATATAAGTTG
97259498 -ATTTTGAA
65 AATTTTG-A
*
97259506 AAACAAAAATT
1 AAACAGAAATT
97259517 AAAAGGCTTA
Statistics
Matches: 212, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
72 147 0.69
74 5 0.02
75 59 0.28
76 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (72 bp):
AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA
ATTTTGA
Found at i:97259473 original size:147 final size:144
Alignment explanation
Indices: 97259170--97259520 Score: 440
Period size: 147 Copynumber: 2.4 Consensus size: 144
97259160 AGTGTGTAAT
* * ***
97259170 CTGAAGCTCAACTCACCTCT-CACAATATGAGTTGATTTTTTTTTTAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTAC-CAATATAAGTTGA---TTTTGAAAAACAGAAATTGAAAATAC
* *
97259234 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATAAGTTGAATTTTGAAAACAGAAATTG
62 CTCAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTG
97259299 AAATTACCTCAGCGTGTC
127 AAATTACCTCAGCGTGTC
** *
97259317 CTGAGGCTCAACTCATTTCT-CGCAATATAAGTTGAATTTTG-AAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTAC-CAATATAAGTTG-ATTTTGAAAAACAGAAATTGAAAATACCT
* * * *
97259380 CAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGTACAACAGAAATT
64 CAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA--ATTTTG-AAAACAGAAATT
97259445 GAAATTACCTCAGCGTGTC
126 GAAATTACCTCAGCGTGTC
* * *
97259464 CTGGGGCTCAACTCACCTCTACCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAA
1 CTGAGGCTCAACTCACCTCTACCAATATAAGTTGATTTTGAAAAACAGAAATTGAAAA
97259521 GGCTTAACTC
Statistics
Matches: 178, Mismatches: 20, Indels: 13
0.84 0.09 0.06
Matches are distributed among these distances:
144 60 0.34
145 4 0.02
146 14 0.08
147 98 0.55
148 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32
Consensus pattern (144 bp):
CTGAGGCTCAACTCACCTCTACCAATATAAGTTGATTTTGAAAAACAGAAATTGAAAATACCTCA
ACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAAT
TACCTCAGCGTGTC
Found at i:97274649 original size:13 final size:13
Alignment explanation
Indices: 97274631--97274664 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
97274621 TAAGTAAATG
97274631 TTATTATATTATA
1 TTATTATATTATA
97274644 TTATTATATTATA
1 TTATTATATTATA
*
97274657 ATATTATA
1 TTATTATA
97274665 ATGAAACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:97278711 original size:6 final size:6
Alignment explanation
Indices: 97278681--97278799 Score: 84
Period size: 6 Copynumber: 19.3 Consensus size: 6
97278671 AAGAAACATT
* * *
97278681 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
97278730 ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A
*
97278781 A-CAGA ATCAGA ATCTGA AT
1 ATCAGA ATCAGA ATCAGA AT
97278800 GTGAATGCAA
Statistics
Matches: 89, Mismatches: 13, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
5 5 0.06
6 72 0.81
7 9 0.10
8 3 0.03
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:97278735 original size:25 final size:25
Alignment explanation
Indices: 97278702--97278799 Score: 115
Period size: 25 Copynumber: 3.7 Consensus size: 25
97278692 AATCAAAATG
97278702 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
97278727 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATC------AGGTGAC
* *
97278758 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
97278783 AGAATCAGAATCTGAAT
1 AGAATCAGAATCAGAAT
97278800 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
25 39 0.62
31 24 0.38
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:97278739 original size:31 final size:31
Alignment explanation
Indices: 97278702--97278777 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
97278692 AATCAAAATG
97278702 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
*
97278733 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
*
97278764 AGAATCAGTATCAG
1 AGAATCAGAATCAG
97278778 GTAACAGAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:97278792 original size:31 final size:30
Alignment explanation
Indices: 97278702--97278799 Score: 116
Period size: 31 Copynumber: 3.4 Consensus size: 30
97278692 AATCAAAATG
97278702 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGT-ACAGAATC
*
97278733 AGAATCAGAATCAGAATTAGGT---G-A-C
1 AGAATCAGAATCAGAATCAGGTACAGAATC
*
97278758 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGT-ACAGAATC
*
97278789 AGAATCTGAAT
1 AGAATCAGAAT
97278800 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
25 21 0.37
26 1 0.02
27 1 0.02
29 1 0.02
30 1 0.02
31 32 0.56
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGGTACAGAATC
Found at i:97279024 original size:27 final size:27
Alignment explanation
Indices: 97278918--97279024 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
97278908 CATGGCTGCC
* * * *
97278918 AGAA-CAGATATTGTGACAGAGTCACC
1 AGAATCAGATATTGTGGCAAAGCCACT
*
97278944 AG-ATACAGATATTGTGGCAGAGCCACT
1 AGAAT-CAGATATTGTGGCAAAGCCACT
*
97278971 AGAAT-AGATATTTGTGGCATAGCCACT
1 AGAATCAGATA-TTGTGGCAAAGCCACT
*
97278998 AGAATCAGATAATGTGGCAAAGCCACT
1 AGAATCAGATATTGTGGCAAAGCCACT
97279025 TCACAGAATA
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
25 1 0.01
26 7 0.10
27 55 0.79
28 7 0.10
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.22
Consensus pattern (27 bp):
AGAATCAGATATTGTGGCAAAGCCACT
Found at i:97279229 original size:22 final size:22
Alignment explanation
Indices: 97279181--97279232 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
97279171 GTAAATACGT
*
97279181 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
97279203 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
97279225 TTGGCACA
1 TTGGCACA
97279233 GAGCTATCGA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:97279606 original size:27 final size:28
Alignment explanation
Indices: 97279544--97279607 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
97279534 TAGTCACTTG
*
97279544 CCCACAAGGGCAAAACAGTCATTTAACA
1 CCCACAAGGGCAAAACAGTAATTTAACA
* ** *
97279572 CCC-TAAGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAACAGTAATTTAACA
97279598 CCCACAAGGG
1 CCCACAAGGG
97279608 TATCTCGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.17
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAGTAATTTAACA
Found at i:97279944 original size:27 final size:27
Alignment explanation
Indices: 97279587--97279937 Score: 522
Period size: 27 Copynumber: 13.0 Consensus size: 27
97279577 AGGGCAAAAT
* * * *
97279587 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
97279614 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
97279641 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97279668 GATAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97279695 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
97279722 GGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97279749 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97279776 GGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97279803 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97279830 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
97279857 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97279884 GATAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
97279911 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
97279938 AATAATTTTG
Statistics
Matches: 292, Mismatches: 32, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 292 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:97279960 original size:27 final size:27
Alignment explanation
Indices: 97279929--97280267 Score: 262
Period size: 27 Copynumber: 12.6 Consensus size: 27
97279919 TACCCTACAG
* **
97279929 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *** * ** *
97279956 TGGTAAAACGGTAATTTTGTAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
97279983 GGGTACTTT-GGTAATTTTACAAGTCAA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
*
97280010 GGGTATTTCAATAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
97280037 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
*
97280064 GGGTATTTAAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
97280091 GGGTATTTTAGTAATTTTGCAAAGT-GA
1 GGGTATTTCAGTAATTTTACAAA-TCGA
97280118 GGGTATTTCTA-TAATTTTACAAATCGA
1 GGGTATTTC-AGTAATTTTACAAATCGA
**
97280145 GGGTATTTCAGTAATTTTAC-AATTAA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
97280171 CGGTATTTCGGTAATTTTATAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * *
97280198 GGGTATTTGGGTAATTTTATAAA-CTGG
1 GGGTATTTCAGTAATTTTACAAATC-GA
* ** *
97280225 GGGTACTTT-GGTAATTTTACAGCT-GG
1 GGGTA-TTTCAGTAATTTTACAAATCGA
*
97280251 GGGTATTTTAGTAATTT
1 GGGTATTTCAGTAATTT
97280268 GGTAAACTAA
Statistics
Matches: 256, Mismatches: 43, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
25 3 0.01
26 42 0.16
27 205 0.80
28 6 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:97280184 original size:26 final size:26
Alignment explanation
Indices: 97279739--97280245 Score: 208
Period size: 27 Copynumber: 18.8 Consensus size: 26
97279729 CTATCCTACA
* ** *
97279739 AGGGTATTTCGGTAATTCTACCCTACA
1 AGGGTATTTCGGTAATTTTACAAT-CG
* *
97279766 AGGGTATTTCGGTAATTCTACCATAC-
1 AGGGTATTTCGGTAATTTTACAAT-CG
* * **
97279792 AGGGGTATTTCAGTAATTCTACCCTAC-
1 A-GGGTATTTCGGTAATTTTACAAT-CG
** *
97279819 AGGGGTATTTCGGT-ATTTCTACCCTACA
1 A-GGGTATTTCGGTAATTT-TACAAT-CG
* **
97279847 AGGGTATTTCGGTAATTCTACCCTAC-
1 AGGGTATTTCGGTAATTTTACAAT-CG
* * **
97279873 AGGGGTATTTCGATAATTCTACCCTAC-
1 A-GGGTATTTCGGTAATTTTACAAT-CG
* **
97279900 ATGGGTATTTCGGTAATTCTACCCTAC-
1 A-GGGTATTTCGGTAATTTTACAAT-CG
**
97279927 AGGGGTATTTCAATAATTTTGTA-AATCG
1 A-GGGTATTTCGGTAA-TTT-TACAATCG
* ***
97279955 ATGGTAAAACGGTAATTTTGTA-AATCG
1 AGGGTATTTCGGTAA-TTT-TACAATCG
* *
97279982 GGGGTACTTT-GGTAATTTTACAAGTCA
1 AGGGTA-TTTCGGTAATTTTACAA-TCG
**
97280009 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTAC-AATCG
** * *
97280036 AGGGTATTTTAGTAATTTTGCAAACTG
1 AGGGTATTTCGGTAATTTTACAATC-G
**
97280063 AGGGTATTTAAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTAC-AATCG
** *
97280090 AGGGTATTTTAGTAATTTTGCAAAGT-G
1 AGGGTATTTCGGTAATTTTAC-AA-TCG
**
97280117 AGGGTATTTCTATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTAC-AATCG
* **
97280144 AGGGTATTTCAGTAATTTTACAATTA
1 AGGGTATTTCGGTAATTTTACAATCG
* *
97280170 ACGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTA-CAATCG
* * *
97280197 AGGGTATTTGGGTAATTTTATAAACTG
1 AGGGTATTTCGGTAATTTTACAATC-G
*
97280224 GGGGTACTTT-GGTAATTTTACA
1 AGGGTA-TTTCGGTAATTTTACA
97280246 GCTGGGGGTA
Statistics
Matches: 401, Mismatches: 59, Indels: 40
0.80 0.12 0.08
Matches are distributed among these distances:
25 2 0.00
26 41 0.10
27 339 0.85
28 17 0.04
29 2 0.00
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.37
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAATCG
Found at i:97291155 original size:193 final size:193
Alignment explanation
Indices: 97290798--97291174 Score: 576
Period size: 193 Copynumber: 2.0 Consensus size: 193
97290788 TTTGCTCCCA
*
97290798 ACAATCTCGGATGGCAGAATCTTAACGAAATTTCATTTTCCTTTTTCCCTATTTCTCCACCCATT
1 ACAATCTCGGATGGCAGAATCTTAACGAAATTCCATTTTCCTTTTTCCCTATTTCTCCACCCATT
* * * * *
97290863 CCTCCATTCGTCATCCTAACATTGATGCTTGAACACCACAATGTCCCCTTTATAAGGCCTAGAGC
66 CCTCCATTCATCATCCTAAAATTGATGCTCGAACACCACAATGTCCCCTTTATAAAGCATAGAGC
** * * *
97290928 TTCGTACATCATGGGTGTACTCAGTAACATCGTATGGCGGTATCTAACAGAATCACCCCTTAT
131 TTCACACATCACGGGTGCACTCAATAACATCGTATGGCGGTATCTAACAGAATCACCCCTTAT
* * *
97290991 ACAATCTTGGATGGTAGAATTTTAACGAAATTCCATTTTCCTTTTTCCCTATTTCTCCACCCATT
1 ACAATCTCGGATGGCAGAATCTTAACGAAATTCCATTTTCCTTTTTCCCTATTTCTCCACCCATT
*
97291056 CCTCCATTCATTATCCTAAAATTGATGCTCGAACACCACAATGT-CCCTTTCATAAAGCATAGAG
66 CCTCCATTCATCATCCTAAAATTGATGCTCGAACACCACAATGTCCCCTTT-ATAAAGCATAGAG
* * *
97291120 TTTCACACATCACGGGTGCACTCAATAATATCGTATGGCGGTTTCTAACAGAATC
130 CTTCACACATCACGGGTGCACTCAATAACATCGTATGGCGGTATCTAACAGAATC
97291175 TCTATTTATT
Statistics
Matches: 165, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
192 6 0.04
193 159 0.96
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (193 bp):
ACAATCTCGGATGGCAGAATCTTAACGAAATTCCATTTTCCTTTTTCCCTATTTCTCCACCCATT
CCTCCATTCATCATCCTAAAATTGATGCTCGAACACCACAATGTCCCCTTTATAAAGCATAGAGC
TTCACACATCACGGGTGCACTCAATAACATCGTATGGCGGTATCTAACAGAATCACCCCTTAT
Found at i:97294060 original size:28 final size:28
Alignment explanation
Indices: 97294020--97294125 Score: 90
Period size: 28 Copynumber: 3.8 Consensus size: 28
97294010 AAGCGTCCTG
* *
97294020 GTGGCTATGCCACAAATTATTTG-ATCTA
1 GTGGCTCTGCCACAAA-TATCTGTATCTA
* *
97294048 GTGGCTCTGCCACATATATCTGTATCTG
1 GTGGCTCTGCCACAAATATCTGTATCTA
* * * *
97294076 GTGGCTCTACCACGATTATCTGTATCTG
1 GTGGCTCTGCCACAAATATCTGTATCTA
* * *
97294104 GTGACTCTGTCAC-ATTATCTGT
1 GTGGCTCTGCCACAAATATCTGT
97294126 TCTGGCAGCC
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 14 0.21
28 52 0.79
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (28 bp):
GTGGCTCTGCCACAAATATCTGTATCTA
Found at i:97294112 original size:56 final size:54
Alignment explanation
Indices: 97294017--97294130 Score: 131
Period size: 56 Copynumber: 2.1 Consensus size: 54
97294007 AGGAAGCGTC
* * *
97294017 CTGGTGGCTATGCCACAAATTATTTGATCTAGTGGCTCTGCCACATATATCTGTAT
1 CTGGTGGCTATACCACAAATTATCTGATCTAGTGACTCTGCCACAT-TATCTGT-T
* * * *
97294073 CTGGTGGCTCTACCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATACCACAAATTATCTG-ATCTAGTGACTCTGCCACATTATCTGTT
97294127 CTGG
1 CTGG
97294131 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 5 0.10
55 14 0.28
56 31 0.62
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATACCACAAATTATCTGATCTAGTGACTCTGCCACATTATCTGTT
Found at i:97295532 original size:15 final size:14
Alignment explanation
Indices: 97295512--97295553 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
97295502 TGAGATAATG
97295512 AAAAATAATAAATTT
1 AAAAATAA-AAATTT
97295527 AAAAATAAAAA-TT
1 AAAAATAAAAATTT
97295540 AATTAAATAAAAAT
1 AA--AAATAAAAAT
97295554 AATTTCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 4 0.17
14 3 0.12
15 17 0.71
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAAATAAAAATTT
Found at i:97295557 original size:18 final size:18
Alignment explanation
Indices: 97295512--97295573 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
97295502 TGAGATAATG
*
97295512 AAAAATAATAAATTTAAA-
1 AAAAATAATTAA-TTAAAT
97295530 AATAAA-AATTAATTAAAT
1 AA-AAATAATTAATTAAAT
*
97295548 AAAAATAATTTCA-TAAAT
1 AAAAATAA-TTAATTAAAT
97295566 AAAAATAA
1 AAAAATAA
97295574 ACTAGAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
17 8 0.21
18 24 0.63
19 6 0.16
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (18 bp):
AAAAATAATTAATTAAAT
Found at i:97295564 original size:14 final size:15
Alignment explanation
Indices: 97295529--97295557 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
97295519 ATAAATTTAA
97295529 AAATAAAAATTAATT
1 AAATAAAAATTAATT
97295544 AAATAAAAA-TAATT
1 AAATAAAAATTAATT
97295558 TCATAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATAAAAATTAATT
Found at i:97295995 original size:71 final size:71
Alignment explanation
Indices: 97295900--97296040 Score: 246
Period size: 71 Copynumber: 2.0 Consensus size: 71
97295890 GTGTTGATAT
* * *
97295900 TTTTTCTCAAATTAGGATGTTTACATACATGAAGTTCATAATGCTTCAACTCATATGGGAGACGT
1 TTTTTCTCAAATTAAGATGCTTACATACATCAAGTTCATAATGCTTCAACTCATATGGGAGACGT
97295965 TCTTTA
66 TCTTTA
*
97295971 TTTTTCTCAAATTAAGATGCTTACATACATCAAGTTCATAATGCTTCAACTCATATGGGAGAGGT
1 TTTTTCTCAAATTAAGATGCTTACATACATCAAGTTCATAATGCTTCAACTCATATGGGAGACGT
97296036 TCTTT
66 TCTTT
97296041 CTCTTGTTGA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (71 bp):
TTTTTCTCAAATTAAGATGCTTACATACATCAAGTTCATAATGCTTCAACTCATATGGGAGACGT
TCTTTA
Found at i:97298170 original size:18 final size:20
Alignment explanation
Indices: 97298134--97298177 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 20
97298124 ATCTTAAAAG
97298134 ATAAAA-AAAATTAATAACT
1 ATAAAATAAAATTAATAACT
97298153 ATAAAATAAAATT-A-AACT
1 ATAAAATAAAATTAATAACT
97298171 ATAAAAT
1 ATAAAAT
97298178 TTAAAACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.46
19 7 0.29
20 6 0.25
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (20 bp):
ATAAAATAAAATTAATAACT
Found at i:97300030 original size:20 final size:20
Alignment explanation
Indices: 97300007--97300045 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
97299997 CTCAATTTAC
97300007 TTTTAATTGACAAATAATTT
1 TTTTAATTGACAAATAATTT
*
97300027 TTTTAATTGACATATAATT
1 TTTTAATTGACAAATAATT
97300046 GCAGCACTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (20 bp):
TTTTAATTGACAAATAATTT
Found at i:97300415 original size:41 final size:41
Alignment explanation
Indices: 97300358--97300439 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
97300348 GAGGTTCAAG
*
97300358 CCCTCTTTCTAGCGTTTCTCACATGTTTTTTATGGTTTAAT
1 CCCTCTTTCTAGCGTTTCTCACATATTTTTTATGGTTTAAT
97300399 CCCTCTTTCTAGCGTTTCTCACATATTTTTTATGGTTTAAT
1 CCCTCTTTCTAGCGTTTCTCACATATTTTTTATGGTTTAAT
97300440 TTGAAACTCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.16, C:0.22, G:0.11, T:0.51
Consensus pattern (41 bp):
CCCTCTTTCTAGCGTTTCTCACATATTTTTTATGGTTTAAT
Found at i:97303809 original size:86 final size:86
Alignment explanation
Indices: 97303659--97303835 Score: 309
Period size: 86 Copynumber: 2.1 Consensus size: 86
97303649 GTACGTATGG
*
97303659 TATACGTAACAAAAGGTGTTGGAATGTGTTAATAATTGAAAATTGCATTTTCAGGTATAAGTATT
1 TATACGTAACAAAAGGTGTTAGAATGTGTTAATAATTGAAAATTGCATTTTCAGGTATAAGTATT
97303724 GGAACCTCAAGCTTAGGAATC
66 GGAACCTCAAGCTTAGGAATC
* * *
97303745 TATAGGTAACAAAAGGTGTTAGAATGTGTTAATAATTGAAAATTGCATTTTTAGGTGTAAGTATT
1 TATACGTAACAAAAGGTGTTAGAATGTGTTAATAATTGAAAATTGCATTTTCAGGTATAAGTATT
97303810 GGAACCTCAAGCTTAGGAATC
66 GGAACCTCAAGCTTAGGAATC
*
97303831 AATAC
1 TATAC
97303836 CTCTTAGGTT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.33
Consensus pattern (86 bp):
TATACGTAACAAAAGGTGTTAGAATGTGTTAATAATTGAAAATTGCATTTTCAGGTATAAGTATT
GGAACCTCAAGCTTAGGAATC
Found at i:97305126 original size:17 final size:17
Alignment explanation
Indices: 97305104--97305138 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
97305094 CCAAAAAAAA
97305104 GACTTACCTATAGGAGG
1 GACTTACCTATAGGAGG
*
97305121 GACTTACCTATAGTAGG
1 GACTTACCTATAGGAGG
97305138 G
1 G
97305139 TGCCAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (17 bp):
GACTTACCTATAGGAGG
Found at i:97318637 original size:22 final size:22
Alignment explanation
Indices: 97318594--97318637 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
97318584 AAATGAGATG
* *
97318594 GGGAAAAATTTCGGCAGGGAAA
1 GGGAAAAATTTCGGAAGAGAAA
97318616 GGGAAAAA-TTCGGAAGAAGAAA
1 GGGAAAAATTTCGGAAG-AGAAA
97318638 AAAAGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.48, C:0.07, G:0.34, T:0.11
Consensus pattern (22 bp):
GGGAAAAATTTCGGAAGAGAAA
Found at i:97319270 original size:18 final size:19
Alignment explanation
Indices: 97319247--97319288 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
97319237 TGTTTTAAAG
97319247 TTTATAG-T-TTAATTTTAT
1 TTTATAGTTATTAATTTT-T
97319265 TTTATAGTTATTAATTTTT
1 TTTATAGTTATTAATTTTT
97319284 TTTAT
1 TTTAT
97319289 CTTTTAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.32
19 7 0.32
20 8 0.36
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (19 bp):
TTTATAGTTATTAATTTTT
Found at i:97321819 original size:18 final size:18
Alignment explanation
Indices: 97321782--97321843 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
97321772 TCTTTCTAGT
*
97321782 TTATATTTATTT-ATTAAA
1 TTATTTTTATTTAATT-AA
97321800 TTATTTTTATTTAATTAA
1 TTATTTTTATTTAATTAA
*
97321818 TT-TTTATT-TTTAAATTTA
1 TTATTT-TTATTT-AATTAA
97321836 TTATTTTT
1 TTATTTTT
97321844 CATTATCTCG
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
17 6 0.16
18 26 0.68
19 6 0.16
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTATTTTTATTTAATTAA
Found at i:97321820 original size:15 final size:14
Alignment explanation
Indices: 97321791--97321826 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
97321781 TTTATATTTA
*
97321791 TTTATTAAATTATT
1 TTTATTTAATTATT
97321805 TTTATTTAATTAATT
1 TTTATTTAATT-ATT
97321820 TTTATTT
1 TTTATTT
97321827 TTAAATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTATTTAATTATT
Found at i:97321839 original size:15 final size:14
Alignment explanation
Indices: 97321802--97321843 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
97321792 TTATTAAATT
97321802 ATTTTTATTTAATT-A
1 ATTTTTATTT--TTAA
97321817 ATTTTTATTTTTAA
1 ATTTTTATTTTTAA
97321831 ATTTATTATTTTT
1 ATTT-TTATTTTT
97321844 CATTATCTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.08
14 5 0.20
15 18 0.72
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
ATTTTTATTTTTAA
Found at i:97323669 original size:49 final size:49
Alignment explanation
Indices: 97323604--97323697 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
97323594 TTTATTTGTC
*
97323604 TTTAATTAAATTTTTTATTCTATGTTAAAAATATATTTTAAATATTTAA
1 TTTAATTAAATTTTTTATTCTATATTAAAAATATATTTTAAATATTTAA
* *
97323653 TTTAATTAATTTTTTTATTCTGTATTAAAAATATATTTTAAATAT
1 TTTAATTAAATTTTTTATTCTATATTAAAAATATATTTTAAATAT
97323698 GAAATGTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (49 bp):
TTTAATTAAATTTTTTATTCTATATTAAAAATATATTTTAAATATTTAA
Found at i:97324228 original size:27 final size:27
Alignment explanation
Indices: 97324182--97324242 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
97324172 TATATTGAAA
97324182 CTAAATAA-TTTTTTTAAAAGAACAGT
1 CTAAATAATTTTTTTTAAAAGAACAGT
97324208 CTAAATAATTTTTTTTAAAAGAACAGT
1 CTAAATAATTTTTTTTAAAAGAACAGT
97324235 CT-AATAAT
1 CTAAATAAT
97324243 CTAGTTTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 14 0.41
27 20 0.59
ACGTcount: A:0.46, C:0.08, G:0.07, T:0.39
Consensus pattern (27 bp):
CTAAATAATTTTTTTTAAAAGAACAGT
Found at i:97324250 original size:27 final size:27
Alignment explanation
Indices: 97324182--97324250 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
97324172 TATATTGAAA
*
97324182 CTAAATAATT-TTTTTAAAAGAACAGT
1 CTAAATAATTAGTTTTAAAAGAACAGT
**
97324208 CTAAATAATTTTTTTTAAAAGAACAGT
1 CTAAATAATTAGTTTTAAAAGAACAGT
97324235 CT-AATAATCTAGTTTT
1 CTAAATAAT-TAGTTTT
97324251 TATTATAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
26 16 0.41
27 23 0.59
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (27 bp):
CTAAATAATTAGTTTTAAAAGAACAGT
Found at i:97324314 original size:14 final size:14
Alignment explanation
Indices: 97324292--97324325 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
97324282 TTATTAATTA
97324292 GTTTCAAAAAATAT
1 GTTTCAAAAAATAT
* *
97324306 GTTTTAAAACATAT
1 GTTTCAAAAAATAT
97324320 GTTTCA
1 GTTTCA
97324326 TTATTTGTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (14 bp):
GTTTCAAAAAATAT
Found at i:97326246 original size:2 final size:2
Alignment explanation
Indices: 97326239--97326280 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
97326229 TGCACTTGTT
97326239 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
97326281 TATATACATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:97327118 original size:41 final size:41
Alignment explanation
Indices: 97327061--97327143 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
97327051 ACGGCCATGT
*
97327061 GACATAGCCCAGCTTGTGTGGCTTAGGGACATGGTCGTGTA
1 GACATAGCCCAGCTTGTGTAGCTTAGGGACATGGTCGTGTA
97327102 GACATAGCCCAGCTTGTGTAGCTTAGGGACATGGTCGTGTA
1 GACATAGCCCAGCTTGTGTAGCTTAGGGACATGGTCGTGTA
97327143 G
1 G
97327144 CCAAACCATG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.20, C:0.19, G:0.34, T:0.27
Consensus pattern (41 bp):
GACATAGCCCAGCTTGTGTAGCTTAGGGACATGGTCGTGTA
Found at i:97327143 original size:21 final size:21
Alignment explanation
Indices: 97327076--97327144 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
97327066 AGCCCAGCTT
*
97327076 GTGTGGCTTAGGGACATGGTC
1 GTGTAGCTTAGGGACATGGTC
* ** * *
97327097 GTGTAGACATA-GCCCA-GCTT
1 GTGTAG-CTTAGGGACATGGTC
97327117 GTGTAGCTTAGGGACATGGTC
1 GTGTAGCTTAGGGACATGGTC
97327138 GTGTAGC
1 GTGTAGC
97327145 CAAACCATGC
Statistics
Matches: 34, Mismatches: 11, Indels: 6
0.67 0.22 0.12
Matches are distributed among these distances:
19 3 0.09
20 11 0.32
21 17 0.50
22 3 0.09
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (21 bp):
GTGTAGCTTAGGGACATGGTC
Found at i:97338969 original size:11 final size:11
Alignment explanation
Indices: 97338953--97338977 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
97338943 TTATATATAC
97338953 TAATAAAATAA
1 TAATAAAATAA
97338964 TAATAAAATAA
1 TAATAAAATAA
97338975 TAA
1 TAA
97338978 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:97339879 original size:21 final size:23
Alignment explanation
Indices: 97339839--97339881 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
97339829 AAAACTATAC
97339839 AAATTTTATTAATATAATCAATG
1 AAATTTTATTAATATAATCAATG
*
97339862 AAATTTT-TTTAT-TAATCAAT
1 AAATTTTATTAATATAATCAAT
97339882 CTGTTCGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 4 0.21
23 7 0.37
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (23 bp):
AAATTTTATTAATATAATCAATG
Found at i:97341523 original size:18 final size:18
Alignment explanation
Indices: 97341496--97341541 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
97341486 TGTGGCCGTG
97341496 TGGG-CCACACAGGGGTA
1 TGGGCCCACACAGGGGTA
*
97341513 TGGGCCCACACAGGGGTG
1 TGGGCCCACACAGGGGTA
*
97341531 TGAGCCCACAC
1 TGGGCCCACAC
97341542 GGGCACTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 4 0.15
18 22 0.85
ACGTcount: A:0.22, C:0.30, G:0.37, T:0.11
Consensus pattern (18 bp):
TGGGCCCACACAGGGGTA
Found at i:97355559 original size:25 final size:25
Alignment explanation
Indices: 97355531--97355588 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
97355521 TATGGATTAT
97355531 GGTTTAAGAGTGGTTTAAGG-GTT-GG
1 GGTTTAAG-GTGGTTT-AGGTGTTAGG
*
97355556 GGTTTAAGGTTGTTTAGGTGTTAGG
1 GGTTTAAGGTGGTTTAGGTGTTAGG
97355581 GG-TTAAGG
1 GGTTTAAGG
97355589 GTTAAGGGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 3 0.10
24 15 0.50
25 12 0.40
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.38
Consensus pattern (25 bp):
GGTTTAAGGTGGTTTAGGTGTTAGG
Found at i:97355597 original size:14 final size:13
Alignment explanation
Indices: 97355545--97355619 Score: 51
Period size: 14 Copynumber: 5.2 Consensus size: 13
97355535 TAAGAGTGGT
*
97355545 TTAAGGGTTGGGG
1 TTAAGGGTTAGGG
97355558 TTTAAGGTTGTTTAGGTG
1 -TTAAGG--G-TTAGG-G
*
97355576 TTAGGGGTTAAGGG
1 TTAAGGGTT-AGGG
97355590 TTAAGGGTTAGTGG
1 TTAAGGGTTAG-GG
*
97355604 TTCAGGGTTCAGGG
1 TTAAGGGTT-AGGG
97355618 TT
1 TT
97355620 TATGTTTTAG
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
13 2 0.04
14 31 0.62
15 6 0.12
16 1 0.02
17 9 0.18
18 1 0.02
ACGTcount: A:0.17, C:0.03, G:0.43, T:0.37
Consensus pattern (13 bp):
TTAAGGGTTAGGG
Found at i:97355605 original size:21 final size:21
Alignment explanation
Indices: 97355545--97355619 Score: 71
Period size: 21 Copynumber: 3.4 Consensus size: 21
97355535 TAAGAGTGGT
97355545 TTAAGGGTT-GGGGTTTAAGGTTG
1 TTAAGGGTTAGGGG-TTAAGG--G
*
97355568 TTTAGGTGTTAGGGGTTAAGGG
1 TTAAGG-GTTAGGGGTTAAGGG
* *
97355590 TTAAGGGTTAGTGGTTCAGGG
1 TTAAGGGTTAGGGGTTAAGGG
*
97355611 TTCAGGGTT
1 TTAAGGGTT
97355620 TATGTTTTAG
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 21 0.47
22 6 0.13
23 5 0.11
24 9 0.20
25 4 0.09
ACGTcount: A:0.17, C:0.03, G:0.43, T:0.37
Consensus pattern (21 bp):
TTAAGGGTTAGGGGTTAAGGG
Found at i:97355780 original size:7 final size:7
Alignment explanation
Indices: 97355765--97355809 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
97355755 TTAATTATCA
*
97355765 TTATAGT
1 TTATGGT
97355772 TTATGGT
1 TTATGGT
97355779 TTATGGT
1 TTATGGT
*
97355786 TTAAGGT
1 TTATGGT
*
97355793 ATATGGT
1 TTATGGT
*
97355800 TTAAGGT
1 TTATGGT
97355807 TTA
1 TTA
97355810 AAGTGTATGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (7 bp):
TTATGGT
Found at i:97355787 original size:14 final size:14
Alignment explanation
Indices: 97355765--97355809 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
97355755 TTAATTATCA
* *
97355765 TTATAGTTTATGGT
1 TTATGGTTTAAGGT
97355779 TTATGGTTTAAGGT
1 TTATGGTTTAAGGT
*
97355793 ATATGGTTTAAGGT
1 TTATGGTTTAAGGT
97355807 TTA
1 TTA
97355810 AAGTGTATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:97355818 original size:21 final size:21
Alignment explanation
Indices: 97355773--97355818 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
97355763 CATTATAGTT
* *
97355773 TATGGTTTATGGTTTAAGGTA
1 TATGGTTTAAGGTTTAAAGTA
*
97355794 TATGGTTTAAGGTTTAAAGTG
1 TATGGTTTAAGGTTTAAAGTA
97355815 TATG
1 TATG
97355819 AGTTACTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (21 bp):
TATGGTTTAAGGTTTAAAGTA
Found at i:97356202 original size:7 final size:7
Alignment explanation
Indices: 97356188--97356243 Score: 94
Period size: 7 Copynumber: 7.9 Consensus size: 7
97356178 AAAATCTTCA
97356188 AAAAAAT
1 AAAAAAT
*
97356195 ATAAAAT
1 AAAAAAT
97356202 ATAAAAAT
1 A-AAAAAT
97356210 AAAAAAT
1 AAAAAAT
97356217 AAAAAAT
1 AAAAAAT
97356224 AAAAAAT
1 AAAAAAT
97356231 AAAAAAT
1 AAAAAAT
97356238 AAAAAA
1 AAAAAA
97356244 CTTAAAAACT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
7 40 0.87
8 6 0.13
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
AAAAAAT
Found at i:97361208 original size:42 final size:42
Alignment explanation
Indices: 97361161--97361254 Score: 170
Period size: 42 Copynumber: 2.2 Consensus size: 42
97361151 AATAATTTTT
*
97361161 TAAAGGTCATTTTTTTAGCGGCGTTTTTGATAAAAGCGCCGC
1 TAAAGGTCATTTTTTTAGCGGCGTTTTAGATAAAAGCGCCGC
*
97361203 TAAAGGTCATTTTTTTAGCGGCGTTTTAGGTAAAAGCGCCGC
1 TAAAGGTCATTTTTTTAGCGGCGTTTTAGATAAAAGCGCCGC
97361245 TAAAGGTCAT
1 TAAAGGTCAT
97361255 GACCTTTAGC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (42 bp):
TAAAGGTCATTTTTTTAGCGGCGTTTTAGATAAAAGCGCCGC
Found at i:97361960 original size:24 final size:22
Alignment explanation
Indices: 97361907--97361961 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
97361897 CCCGTGCAAA
97361907 GAAGCACACACTCGTGTGAAAG
1 GAAGCACACACTCGTGTGAAAG
97361929 GAAGCACACACTCGTGTGAAAG
1 GAAGCACACACTCGTGTGAAAG
97361951 GAAGCACACAC
1 GAAGCACACAC
97361962 CCTTCTAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.25, T:0.11
Consensus pattern (22 bp):
GAAGCACACACTCGTGTGAAAG
Found at i:97364020 original size:8 final size:8
Alignment explanation
Indices: 97364009--97364038 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
97363999 TTTAAATCAA
97364009 AAAATATT
1 AAAATATT
97364017 AAAATATT
1 AAAATATT
97364025 AAAATATT
1 AAAATATT
97364033 AAAATA
1 AAAATA
97364039 AGAGCGGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATATT
Found at i:97364897 original size:44 final size:45
Alignment explanation
Indices: 97364847--97364933 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 45
97364837 AATTTTGATT
* *
97364847 GAAGATGACGATGAGGATGATAGATTGAAGAA-AACATCAAGAAA
1 GAAGATGACGAAGAGGAAGATAGATTGAAGAAGAACATCAAGAAA
* *
97364891 GAAGATGATGAAGAGGAAGATAGATTGAAGAAGAAGATCAAGA
1 GAAGATGACGAAGAGGAAGATAGATTGAAGAAGAACATCAAGA
97364934 TTGAAAACAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
44 29 0.76
45 9 0.24
ACGTcount: A:0.51, C:0.05, G:0.30, T:0.15
Consensus pattern (45 bp):
GAAGATGACGAAGAGGAAGATAGATTGAAGAAGAACATCAAGAAA
Found at i:97366204 original size:14 final size:14
Alignment explanation
Indices: 97366185--97366220 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
97366175 CGAAAATAAA
97366185 TCCATCTTTTTAAT
1 TCCATCTTTTTAAT
97366199 TCCATCTTTTTAAT
1 TCCATCTTTTTAAT
97366213 TCCATCTT
1 TCCATCTT
97366221 CATTATCGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.19, C:0.25, G:0.00, T:0.56
Consensus pattern (14 bp):
TCCATCTTTTTAAT
Found at i:97366558 original size:20 final size:20
Alignment explanation
Indices: 97366533--97366571 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
97366523 TTTTGTAGTA
97366533 ATTTTC-TTGATGATTATAAT
1 ATTTTCTTTGATGA-TATAAT
97366553 ATTTTCTTTGATGATATAA
1 ATTTTCTTTGATGATATAA
97366572 CATGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.54
Consensus pattern (20 bp):
ATTTTCTTTGATGATATAAT
Found at i:97374458 original size:89 final size:89
Alignment explanation
Indices: 97374305--97374481 Score: 293
Period size: 89 Copynumber: 2.0 Consensus size: 89
97374295 AATAGGCGTC
*
97374305 GGTTACAGAGAGGATTTTTGGGAAAAACTGATTCACTCAATCCATTCAACCACCCACTACTCAGT
1 GGTTACAAAGAGGATTTTTGGGAAAAACTGATTCACTCAATCCATTCAACCACCCACTACTCAGT
97374370 TATCCAATATAACTCAAACTCTTT
66 TATCCAATATAACTCAAACTCTTT
** **
97374394 GGTTACAAAGAGGATTTTTGGGGGAAA-TAGATTCACTCAATCCATTCAACCACCCACTTTTCAG
1 GGTTACAAAGAGGATTTTTGGGAAAAACT-GATTCACTCAATCCATTCAACCACCCACTACTCAG
97374458 TTATCCAATATAACTCAAACTCTT
65 TTATCCAATATAACTCAAACTCTT
97374482 CATCAGCAAA
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
88 1 0.01
89 81 0.99
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (89 bp):
GGTTACAAAGAGGATTTTTGGGAAAAACTGATTCACTCAATCCATTCAACCACCCACTACTCAGT
TATCCAATATAACTCAAACTCTTT
Found at i:97375985 original size:20 final size:19
Alignment explanation
Indices: 97375962--97376013 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
97375952 GGATTATATA
97375962 TATTATATTATATAATTGAT
1 TATTATATTATATAATTG-T
97375982 TATTATAATTAT-TAATTGT
1 TATTAT-ATTATATAATTGT
* *
97376001 TATGATTTTATAT
1 TATTATATTATAT
97376014 TATTACTAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 4 0.14
19 7 0.25
20 12 0.43
21 5 0.18
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.58
Consensus pattern (19 bp):
TATTATATTATATAATTGT
Found at i:97376334 original size:17 final size:16
Alignment explanation
Indices: 97376277--97376340 Score: 51
Period size: 16 Copynumber: 4.0 Consensus size: 16
97376267 TGTACATTTG
*
97376277 TAATAATTATATT-TGT
1 TAATAAATATATTAT-T
* *
97376293 TATTAAATA-AATATT
1 TAATAAATATATTATT
97376308 TAATAAATATTATTATT
1 TAATAAATA-TATTATT
**
97376325 TAATTGATATATTATT
1 TAATAAATATATTATT
97376341 AGATTAATGA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
15 11 0.29
16 15 0.39
17 12 0.32
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TAATAAATATATTATT
Found at i:97376478 original size:21 final size:20
Alignment explanation
Indices: 97376441--97376482 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
97376431 ATTTATTTAC
97376441 TTATTATTTAAGAAATAATAA
1 TTATTATTTAAGAAAT-ATAA
*
97376462 TTATTA-TTAAGTTAATATAA
1 TTATTATTTAAG-AAATATAA
97376482 T
1 T
97376483 AATATAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (20 bp):
TTATTATTTAAGAAATATAA
Found at i:97377591 original size:12 final size:12
Alignment explanation
Indices: 97377574--97377598 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97377564 GCCGACTACT
97377574 GTTACTGTTACC
1 GTTACTGTTACC
97377586 GTTACTGTTACC
1 GTTACTGTTACC
97377598 G
1 G
97377599 ATTTGACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:97377691 original size:18 final size:18
Alignment explanation
Indices: 97377660--97377694 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97377650 GTGTGTTGAA
* *
97377660 TACTGTTACTGTTACTGC
1 TACTGCTACCGTTACTGC
97377678 TACTGCTACCGTTACTG
1 TACTGCTACCGTTACTG
97377695 ATTACTGATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (18 bp):
TACTGCTACCGTTACTGC
Found at i:97388200 original size:42 final size:42
Alignment explanation
Indices: 97388154--97388249 Score: 156
Period size: 42 Copynumber: 2.3 Consensus size: 42
97388144 TGCCTTTGAA
* *
97388154 ACACGGCCGTGTTCCTTAATCACATGGGTGTGTGAGGTAGCC
1 ACACGGCCGTGTTCCTTAATCACATAGGTGTGTAAGGTAGCC
*
97388196 ACACGACCGTGTTCCTTAATCACATAGGTGTGTAAGGTAGCC
1 ACACGGCCGTGTTCCTTAATCACATAGGTGTGTAAGGTAGCC
*
97388238 ACACGGCTGTGT
1 ACACGGCCGTGT
97388250 CTACTTTGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (42 bp):
ACACGGCCGTGTTCCTTAATCACATAGGTGTGTAAGGTAGCC
Found at i:97391729 original size:19 final size:20
Alignment explanation
Indices: 97391705--97391747 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 20
97391695 AATCTTTAAG
97391705 GATATGCAATCTT-AGATAT
1 GATATGCAATCTTAAGATAT
97391724 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT-AAGATAT
97391745 GAT
1 GAT
97391748 CTTGTAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
21 9 0.41
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
GATATGCAATCTTAAGATAT
Found at i:97391745 original size:16 final size:17
Alignment explanation
Indices: 97391695--97391745 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
97391685 ATGCAAATAT
*
97391695 AATCTTTAAGGATATGC
1 AATCTTGAAGGATATGC
*
97391712 AATCTTAGATATGATATGC
1 AATCTT-GA-AGGATATGC
97391731 AATCTTGAA-GATATG
1 AATCTTGAAGGATATG
97391746 ATCTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 14 0.47
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
AATCTTGAAGGATATGC
Found at i:97397369 original size:8 final size:7
Alignment explanation
Indices: 97397365--97397435 Score: 65
Period size: 7 Copynumber: 9.7 Consensus size: 7
97397355 AAAAAAAGGA
97397365 AAAAAAG
1 AAAAAAG
*
97397372 AAAATA-
1 AAAAAAG
*
97397378 AAAAGAG
1 AAAAAAG
97397385 AAAAAA-
1 AAAAAAG
97397391 ATAAAAAG
1 A-AAAAAG
97397399 AAAAAAGAG
1 -AAAAA-AG
97397408 AAAAAAAG
1 -AAAAAAG
97397416 AAAAAAAG
1 -AAAAAAG
97397424 AAAAAAG
1 AAAAAAG
97397431 AAAAA
1 AAAAA
97397436 TGGAGAGGCC
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
6 6 0.11
7 27 0.48
8 14 0.25
9 9 0.16
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:97397380 original size:23 final size:22
Alignment explanation
Indices: 97397353--97397435 Score: 96
Period size: 23 Copynumber: 3.7 Consensus size: 22
97397343 CTTCTATTTC
97397353 AAAAAAAAAGGAAAAAAAGAAA
1 AAAAAAAAAGGAAAAAAAGAAA
* * *
97397375 ATAAAAAGA-GAAAAAAATAAA
1 AAAAAAAAAGGAAAAAAAGAAA
*
97397396 AAGAAAAAAGAGAAAAAAAGAAA
1 AAAAAAAAAG-GAAAAAAAGAAA
*
97397419 AAAAGAAAAAAGAAAAA
1 AAAA-AAAAAGGAAAAA
97397436 TGGAGAGGCC
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
21 17 0.35
22 7 0.14
23 20 0.41
24 5 0.10
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.02
Consensus pattern (22 bp):
AAAAAAAAAGGAAAAAAAGAAA
Found at i:97397391 original size:16 final size:16
Alignment explanation
Indices: 97397355--97397435 Score: 80
Period size: 16 Copynumber: 5.3 Consensus size: 16
97397345 TCTATTTCAA
*
97397355 AAAAAAAGGAAAA-A-
1 AAAAAAAGAAAAAGAG
* *
97397369 AAGAAAATAAAAAGAG
1 AAAAAAAGAAAAAGAG
*
97397385 AAAAAAATAAAAAGA-
1 AAAAAAAGAAAAAGAG
* *
97397400 AAAAAGAGAAAAAAAG
1 AAAAAAAGAAAAAGAG
97397416 AAAAAAAGAAAAA-AG
1 AAAAAAAGAAAAAGAG
97397431 AAAAA
1 AAAAA
97397436 TGGAGAGGCC
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 10 0.18
15 20 0.36
16 26 0.46
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (16 bp):
AAAAAAAGAAAAAGAG
Found at i:97398499 original size:44 final size:44
Alignment explanation
Indices: 97398327--97398650 Score: 227
Period size: 44 Copynumber: 7.4 Consensus size: 44
97398317 CAAAGAAACA
*
97398327 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * * **
97398371 AGATCTGACATTCCTGTGCTTACAGCGAAGCAGATCGAGGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
**
97398416 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTAAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
**
97398459 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * ** * **
97398503 AGATCTGACA-CTCCTGTGCTTACAACGAAGCAGATCGAGGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
*
97398548 AGCA--TGGCAT-CCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * * * *
97398590 AGATTTGGCATCTCTGTATTGT-CA-GAAAGCAGATCGAAGATACC
1 AGATTTGGCATCCCTGTGTT-TATAGGGAA-CAGATCGAAGATAGC
*
97398634 AGATTTGGCATCTCTGT
1 AGATTTGGCATCCCTGT
97398651 ATTGGCAGAG
Statistics
Matches: 214, Mismatches: 49, Indels: 34
0.72 0.16 0.11
Matches are distributed among these distances:
41 2 0.01
42 13 0.06
43 33 0.15
44 134 0.63
45 30 0.14
46 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:97398555 original size:132 final size:131
Alignment explanation
Indices: 97398327--97398606 Score: 488
Period size: 132 Copynumber: 2.1 Consensus size: 131
97398317 CAAAGAAACA
* * *
97398327 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
*
97398392 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTAAAGATA
66 ACAACGAAGCAGATCGAGGATTTCAGCATGGCAT-CCTGTGTTTATAGGGAACAAGTTAAAGATA
97398457 GC
130 GC
*
97398459 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAATAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
*
97398524 ACAACGAAGCAGATCGAGGATTTCAGCATGGCATCCTGTGTTTATAGGGAACAAGTTGAAGATAG
66 ACAACGAAGCAGATCGAGGATTTCAGCATGGCATCCTGTGTTTATAGGGAACAAGTTAAAGATAG
97398589 C
131 C
*
97398590 AGATTTGGCATCTCTGT
1 AGATTTGGCATCCCTGT
97398607 ATTGTCAGAA
Statistics
Matches: 141, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
131 47 0.33
132 94 0.67
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (131 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
ACAACGAAGCAGATCGAGGATTTCAGCATGGCATCCTGTGTTTATAGGGAACAAGTTAAAGATAG
C
Found at i:97398651 original size:44 final size:44
Alignment explanation
Indices: 97398581--97398673 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 44
97398571 GGAACAAGTT
* * *
97398581 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAAAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAAAGAAGATC
*
97398625 GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGAAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAAAGAAGATC
97398669 GAAGA
1 GAAGA
97398674 CATAGCTGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (44 bp):
GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAAAGAAGATC
Found at i:97398991 original size:205 final size:205
Alignment explanation
Indices: 97398666--97399303 Score: 1114
Period size: 205 Copynumber: 3.1 Consensus size: 205
97398656 CAGAGAGAAG
* *
97398666 ATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* * * *
97398731 TCTCTATATTGTCAGAGAAAAAATCGAAGTCTTGCATCTCCACTTCGATGGAGGGCAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACATA
97398796 GCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
131 GCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
97398861 CAAGGAGCAA
196 CAAGGAGCAA
*
97398871 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* *
97398936 TCTTTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTTGACGGAGGGCAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACATA
* * *
97399001 GCAGATCCAAACTTTAGATGTTTATACTAAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
131 GCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
*
97399066 TAAGGAGCAA
196 CAAGGAGCAA
*
97399076 ATCGAAGACATAGCTGATTTGGCTTTCACATGCTTACGTTGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* *
97399141 TCTCTGTATTGTCAGAGAACAAACCGAAGTTTGGCATCTCCACTTCGACGGAGGGCAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACATA
* *
97399206 GCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCCAGATGGTTTGGCATCCTTGTGCTTA
131 GCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
97399271 CAAGGAGCAA
196 CAAGGAGCAA
97399281 ATCGAAGACATAGCTGATTTGGC
1 ATCGAAGACATAGCTGATTTGGC
97399304 ATCTCTGTAT
Statistics
Matches: 408, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
205 408 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACATA
GCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
CAAGGAGCAA
Found at i:97399469 original size:45 final size:45
Alignment explanation
Indices: 97399388--97399499 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
97399378 GAGTTTGCAA
* * * * *
97399388 GGAGCAGATTGAAGA-AGCAAATTTGGCGTCTTTGTATTAGACGG
1 GGAGCAGATCGAAGATAGCAGATTTGACGTCTCTGTATTAGACAG
* *
97399432 GGAGCAGATCGAAGATAACAGATTTGACGTCTCTGTATTAGATAG
1 GGAGCAGATCGAAGATAGCAGATTTGACGTCTCTGTATTAGACAG
*
97399477 GGAGCAGATCAAAGATAGCAGAT
1 GGAGCAGATCGAAGATAGCAGAT
97399500 ATCGCCTTCC
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
44 14 0.24
45 44 0.76
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.24
Consensus pattern (45 bp):
GGAGCAGATCGAAGATAGCAGATTTGACGTCTCTGTATTAGACAG
Found at i:97399879 original size:19 final size:19
Alignment explanation
Indices: 97399855--97399916 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
97399845 AATCTTTAAG
97399855 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
97399874 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
97399893 GATATGCAATCTTAAAGATAT
1 GATATGCAATCTT--AGATAT
97399914 GAT
1 GAT
97399917 CTTGTAATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
21 9 0.22
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:97403077 original size:5 final size:6
Alignment explanation
Indices: 97403047--97403074 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
97403037 AAACAAAGCA
97403047 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
97403075 GAAGGTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:97404207 original size:26 final size:26
Alignment explanation
Indices: 97404178--97404285 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
97404168 TGGTACAAAT
*
97404178 TGATAAT-GAGTTAGGTAAATATTACA
1 TGATAATGGA-TTAGGTAAATATTCCA
97404204 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATATTCCA
* *
97404230 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATATTCCA
* *
97404256 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATATTCCA
97404282 TGAT
1 TGAT
97404286 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 75 0.97
27 2 0.03
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATATTCCA
Found at i:97404235 original size:52 final size:52
Alignment explanation
Indices: 97404178--97404285 Score: 171
Period size: 52 Copynumber: 2.1 Consensus size: 52
97404168 TGGTACAAAT
97404178 TGATAATGAGTTAGGTAAATATTACATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGAGTTAGGTAAATATTACATGATAATGGATTAGGTAAATATTCCA
* * * * *
97404230 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGAGTTAGGTAAATATTACATGATAATGGATTAGGTAAATATTCCA
97404282 TGAT
1 TGAT
97404286 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.36
Consensus pattern (52 bp):
TGATAATGAGTTAGGTAAATATTACATGATAATGGATTAGGTAAATATTCCA
Found at i:97406280 original size:137 final size:136
Alignment explanation
Indices: 97406035--97406320 Score: 509
Period size: 137 Copynumber: 2.1 Consensus size: 136
97406025 GAGTAGTCTC
* * *
97406035 CCCAAATAGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGTCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
97406100 GTTATCTGAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
97406165 CTGTTA
131 CTGTTA
97406171 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
97406236 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
97406301 ACTGTTA
130 ACTGTTA
**
97406308 CCTGAATGGGCTT
1 CCCAAATGGGCTT
97406321 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
136 19 0.13
137 124 0.87
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:97410957 original size:24 final size:24
Alignment explanation
Indices: 97410929--97410978 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
97410919 AAAAGTAAGC
97410929 AAACTTAGTTAGGATTAAATTCAG
1 AAACTTAGTTAGGATTAAATTCAG
97410953 AAACTTAGTTAGGATTAAATTCAG
1 AAACTTAGTTAGGATTAAATTCAG
97410977 AA
1 AA
97410979 TAAGTAGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.32
Consensus pattern (24 bp):
AAACTTAGTTAGGATTAAATTCAG
Found at i:97411617 original size:41 final size:37
Alignment explanation
Indices: 97411569--97411664 Score: 95
Period size: 41 Copynumber: 2.5 Consensus size: 37
97411559 TCGACCTCGA
97411569 GTCGATGAGACACTAGGT-CTCACTATTGTACTTCGGATAG
1 GTCGATGAGACACTAGGTAC-CAC--TT-TACTTCGGATAG
* ** *
97411609 ATTCGATGAGGTACTAGGTACCACTTTACTTCGGCTAG
1 -GTCGATGAGACACTAGGTACCACTTTACTTCGGATAG
*
97411647 GCCGATGAGACACTAGGT
1 GTCGATGAGACACTAGGT
97411665 GTCAACTTTG
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
37 14 0.30
38 11 0.24
39 2 0.04
41 18 0.39
42 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (37 bp):
GTCGATGAGACACTAGGTACCACTTTACTTCGGATAG
Found at i:97413485 original size:17 final size:17
Alignment explanation
Indices: 97413463--97413506 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
97413453 ACATTATAAG
97413463 ATTATTTTATTA-TATAT
1 ATTATTTT-TTATTATAT
*
97413480 ATTATTATTTATTATAT
1 ATTATTTTTTATTATAT
97413497 ATTATTTTTT
1 ATTATTTTTT
97413507 CACAAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 3 0.12
17 21 0.88
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTATTTTTTATTATAT
Found at i:97413492 original size:19 final size:19
Alignment explanation
Indices: 97413463--97413597 Score: 68
Period size: 19 Copynumber: 7.0 Consensus size: 19
97413453 ACATTATAAG
97413463 ATTATTTTATTATATATATT
1 ATTA-TTTATTATATATATT
97413483 ATTATTTA-T-TATATATT
1 ATTATTTATTATATATATT
* * *
97413500 ATT-TTT-TCACAAATTATT
1 ATTATTTATTATATA-TATT
* *
97413518 ATTA-TTATTTTACATCATT
1 ATTATTTATTATATAT-ATT
*
97413537 ATTTTTATATTATCATTATATT
1 ATTATT-TATTAT-A-TATATT
*
97413559 -TTACTTGCATTATATAT-TT
1 ATTA-TT-TATTATATATATT
*
97413578 ATTAATTATTTATATATATT
1 ATTATTTA-TTATATATATT
97413598 GTTCTTACAT
Statistics
Matches: 86, Mismatches: 15, Indels: 28
0.67 0.12 0.22
Matches are distributed among these distances:
16 3 0.03
17 13 0.15
18 12 0.14
19 24 0.28
20 13 0.15
21 8 0.09
22 11 0.13
23 2 0.02
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (19 bp):
ATTATTTATTATATATATT
Found at i:97413539 original size:16 final size:16
Alignment explanation
Indices: 97413518--97413577 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 16
97413508 ACAAATTATT
97413518 ATTATTATTTTACATC
1 ATTATTATTTTACATC
*
97413534 ATTATT-TTTATATTATC
1 ATTATTATTT-TA-CATC
*
97413551 ATTA-TATTTTACTTGC
1 ATTATTATTTTACAT-C
97413567 ATTATATATTT
1 ATTAT-TATTT
97413578 ATTAATTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
15 4 0.11
16 16 0.46
17 10 0.29
18 5 0.14
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (16 bp):
ATTATTATTTTACATC
Found at i:97413581 original size:33 final size:33
Alignment explanation
Indices: 97413512--97413581 Score: 81
Period size: 33 Copynumber: 2.1 Consensus size: 33
97413502 TTTTTCACAA
* *
97413512 ATTATTATTATTATTTTACATCATTATTTTTAT
1 ATTATCATTATTATTTTACATCATTATTATTAT
*
97413545 ATTATCATTA-TATTTTACTTGCATTATATATT-T
1 ATTATCATTATTATTTTACAT-CATTAT-TATTAT
97413578 ATTA
1 ATTA
97413582 ATTATTTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 9 0.28
33 20 0.62
34 3 0.09
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.60
Consensus pattern (33 bp):
ATTATCATTATTATTTTACATCATTATTATTAT
Found at i:97414020 original size:22 final size:21
Alignment explanation
Indices: 97413966--97414021 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
97413956 ACCCAATATA
*
97413966 TTTTATATATAATTATTATTAT
1 TTTTATATAT-TTTATTATTAT
* *
97413988 TTTATAAATATTTTGTTATTAT
1 TTT-TATATATTTTATTATTAT
97414010 GTTTTATATATT
1 -TTTTATATATT
97414022 GTATAGGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 19 0.68
23 9 0.32
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTTATATATTTTATTATTAT
Found at i:97414249 original size:33 final size:34
Alignment explanation
Indices: 97414193--97414267 Score: 125
Period size: 33 Copynumber: 2.2 Consensus size: 34
97414183 ATTGATATTG
*
97414193 TATTACTCTTTTTTGTATGTCATGCATTATTTAAT
1 TATTACTC-TTTTTGTATATCATGCATTATTTAAT
97414228 TATTACTC-TTTTGTATATCATGCATTATTTAAT
1 TATTACTCTTTTTGTATATCATGCATTATTTAAT
97414261 TATTACT
1 TATTACT
97414268 TTGTATGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
33 31 0.79
35 8 0.21
ACGTcount: A:0.25, C:0.12, G:0.07, T:0.56
Consensus pattern (34 bp):
TATTACTCTTTTTGTATATCATGCATTATTTAAT
Found at i:97421013 original size:27 final size:26
Alignment explanation
Indices: 97420978--97421089 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
97420968 AGCATGGCTG
* *
97420978 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
97421004 CCAGATACAGACAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
97421032 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
97421059 CCAGATCAGATAATTATGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
97421086 CCAG
1 CCAG
97421090 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.69
28 17 0.23
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:97421085 original size:54 final size:54
Alignment explanation
Indices: 97420978--97421089 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
97420968 AGCATGGCTG
* * *
97420978 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGACAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGACAATCATGGCAGAGCCA
* * * *
97421032 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTATGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGACAATCATGGCAGAGCCA
97421086 CCAG
1 CCAG
97421090 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.14
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGACAATCATGGCAGAGCCA
Found at i:97426701 original size:10 final size:10
Alignment explanation
Indices: 97426686--97426723 Score: 67
Period size: 10 Copynumber: 3.8 Consensus size: 10
97426676 TCTTTCAAAA
97426686 TTTTTTTTCT
1 TTTTTTTTCT
*
97426696 TTTTTTCTCT
1 TTTTTTTTCT
97426706 TTTTTTTTCT
1 TTTTTTTTCT
97426716 TTTTTTTT
1 TTTTTTTT
97426724 TTTGAAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:97427769 original size:27 final size:27
Alignment explanation
Indices: 97427707--97427818 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
97427697 AGCATGGCTG
* *
97427707 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
97427733 CCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
*
97427761 CCAGAACAGA-AATATATGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
97427788 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
97427815 CCAG
1 CCAG
97427819 GACACTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.67
28 17 0.24
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:97429077 original size:22 final size:22
Alignment explanation
Indices: 97429050--97429095 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
97429040 ACAGAAGAAG
* *
97429050 AAAAGAATAACAAATGGAGAGA
1 AAAAGAAAAACAAAAGGAGAGA
*
97429072 AAAAGAAAAATAAAAGGAGAGA
1 AAAAGAAAAACAAAAGGAGAGA
97429094 AA
1 AA
97429096 GAGTGATCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.70, C:0.02, G:0.22, T:0.07
Consensus pattern (22 bp):
AAAAGAAAAACAAAAGGAGAGA
Found at i:97429485 original size:306 final size:306
Alignment explanation
Indices: 97428932--97429543 Score: 1134
Period size: 306 Copynumber: 2.0 Consensus size: 306
97428922 GGTATAAGAG
* * *
97428932 GAATCAAGTTTTCGGGATTTCGGGATTTGAGGCAATCAGCTATAGTTTTAAAAATAATGGGAGGA
1 GAATCAAGTTTTCGGGATTTCAGGATTTGAGGCAATCAGCTATAATTTTAAAAATAATGGAAGGA
*
97428997 AGGTGGTATAGAGTAAGGTGGCTGAAGGATTTGGCTATGGGGAACAGAAGAAGAAAAGAATAACA
66 AGGTGGTATAGAGTAAGGTGGCTGAAGGATTCGGCTATGGGGAACAGAAGAAGAAAAGAATAACA
97429062 AATGGAGAGAAAAAGAAAAATAAAAGGAGAGAAAGAGTGATCAGAAAACGGCTCACTTAACCCCT
131 AATGGAGAGAAAAAGAAAAATAAAAGGAGAGAAAGAGTGATCAGAAAACGGCTCACTTAACCCCT
97429127 TGTGCCGAATTTATACAAGCACTACCCTAGCCGAATTTCCCATGCTAAAGTCCCTTGGCCGGCCA
196 TGTGCCGAATTTATACAAGCACTACCCTAGCCGAATTTCCCATGCTAAAGTCCCTTGGCCGGCCA
*
97429192 CCTCTTGTTCCTTGATCAGCTCCTAGATTTCCTTCCTTATCTTTAT
261 CCTCTTGTTCCTTGATCAGCTCCTAGATTTCCTCCCTTATCTTTAT
*
97429238 GAATCAAGTTTTCGGGATTTCAGGATTTGAGGCAATCGGCTATAATTTTAAAAATAATGGAAGGA
1 GAATCAAGTTTTCGGGATTTCAGGATTTGAGGCAATCAGCTATAATTTTAAAAATAATGGAAGGA
*
97429303 AGGTGGTGTAGAGTAAGGTGGCTGAAGGATTCGGCTATGGGGAACAGAAGAAGAAAAGAATAACA
66 AGGTGGTATAGAGTAAGGTGGCTGAAGGATTCGGCTATGGGGAACAGAAGAAGAAAAGAATAACA
* * *
97429368 AATTGAGAGAAAAAGAAAAATAAAAGGAGAGGAAGAGTGATCAGAAAACGGCTCACTTACCCCCT
131 AATGGAGAGAAAAAGAAAAATAAAAGGAGAGAAAGAGTGATCAGAAAACGGCTCACTTAACCCCT
97429433 TGTGCCGAATTTATACAAGCACTACCCTAGCCGAATTTCCCATGCTAAAGTCCCTTGGCCGGCCA
196 TGTGCCGAATTTATACAAGCACTACCCTAGCCGAATTTCCCATGCTAAAGTCCCTTGGCCGGCCA
97429498 CCTCTTGTTCCTTGATCAGCTCCTAGATTTCCTCCCTTATCTTTAT
261 CCTCTTGTTCCTTGATCAGCTCCTAGATTTCCTCCCTTATCTTTAT
97429544 CCTTACTCAA
Statistics
Matches: 296, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
306 296 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (306 bp):
GAATCAAGTTTTCGGGATTTCAGGATTTGAGGCAATCAGCTATAATTTTAAAAATAATGGAAGGA
AGGTGGTATAGAGTAAGGTGGCTGAAGGATTCGGCTATGGGGAACAGAAGAAGAAAAGAATAACA
AATGGAGAGAAAAAGAAAAATAAAAGGAGAGAAAGAGTGATCAGAAAACGGCTCACTTAACCCCT
TGTGCCGAATTTATACAAGCACTACCCTAGCCGAATTTCCCATGCTAAAGTCCCTTGGCCGGCCA
CCTCTTGTTCCTTGATCAGCTCCTAGATTTCCTCCCTTATCTTTAT
Found at i:97434752 original size:25 final size:25
Alignment explanation
Indices: 97434724--97434786 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 25
97434714 TTTACCTTAC
97434724 TTTTATATTATA-CATTATAAGTTTA
1 TTTTATATTATATCATTATAA-TTTA
* *
97434749 TTTTATTATATATATTATTATTATTTA
1 TTTTA-TAT-TATATCATTATAATTTA
*
97434776 TTATATATTAT
1 TTTTATATTAT
97434787 TTTTTCACAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
25 8 0.25
26 6 0.19
27 12 0.38
28 6 0.19
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
TTTTATATTATATCATTATAATTTA
Found at i:97434771 original size:15 final size:15
Alignment explanation
Indices: 97434751--97434922 Score: 54
Period size: 15 Copynumber: 11.3 Consensus size: 15
97434741 TAAGTTTATT
97434751 TTATTA-TATATATTA
1 TTATTATTATATA-TA
97434766 TTATTATTTATTATATA
1 TTATTA-TTA-TATATA
* * *
97434783 TTATT-TTTTCACAAA
1 TTATTATTAT-ATATA
* *
97434798 TTATTATTATTTTACA
1 TTATTATTA-TATATA
* *
97434814 TCATTATT-TTTATA
1 TTATTATTATATATA
* *
97434828 TTATTATTATTTTTA
1 TTATTATTATATATA
*
97434843 CTTGCATTA-TATATTTA
1 -TT--ATTATTATATATA
97434860 TTAATTATTTATATATA
1 TT-ATTA-TTATATATA
* * *
97434877 TTTTTCTTACATATA
1 TTATTATTATATATA
*
97434892 -TATT-TTCAT-TATT
1 TTATTATT-ATATATA
*
97434905 TTA-TATTATATCTA
1 TTATTATTATATATA
97434919 TTAT
1 TTAT
97434923 ATTTCTTATT
Statistics
Matches: 118, Mismatches: 22, Indels: 34
0.68 0.13 0.20
Matches are distributed among these distances:
13 8 0.07
14 26 0.22
15 33 0.28
16 17 0.14
17 26 0.22
18 8 0.07
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.62
Consensus pattern (15 bp):
TTATTATTATATATA
Found at i:97434840 original size:17 final size:16
Alignment explanation
Indices: 97434759--97434842 Score: 73
Period size: 17 Copynumber: 5.1 Consensus size: 16
97434749 TTTTATTATA
97434759 TATATTATTATTATTTAT
1 TATA-TATTATTATTT-T
97434777 TATATATTATT-TTTT
1 TATATATTATTATTTT
* * *
97434792 CACAAATTATTATTATT
1 TATATATTATTATT-TT
* *
97434809 T-TACATCATTATTTT
1 TATATATTATTATTTT
97434824 TATATTATTATTATTTT
1 TATA-TATTATTATTTT
97434841 TA
1 TA
97434843 CTTGCATTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
15 12 0.23
16 16 0.30
17 21 0.40
18 4 0.08
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (16 bp):
TATATATTATTATTTT
Found at i:97434915 original size:40 final size:41
Alignment explanation
Indices: 97434814--97434915 Score: 106
Period size: 40 Copynumber: 2.5 Consensus size: 41
97434804 TTATTTTACA
*
97434814 TCATTATTTTTATATTATTATTATTTTTACTTGCATTATATATT
1 TCATTA-TTTTATATTA-TA-TATTTTTACTTACATTATATATT
97434858 T-ATTAATTATT-TA-TATATATTTTT-CTTACA-TATATATTT
1 TCATT-ATT-TTATATTATATATTTTTACTTACATTATATA-TT
97434897 TCATTATTTTATATTATAT
1 TCATTATTTTATATTATAT
97434916 CTATTATATT
Statistics
Matches: 51, Mismatches: 1, Indels: 16
0.75 0.01 0.24
Matches are distributed among these distances:
38 8 0.16
39 13 0.25
40 15 0.29
41 2 0.04
42 2 0.04
43 7 0.14
44 4 0.08
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.63
Consensus pattern (41 bp):
TCATTATTTTATATTATATATTTTTACTTACATTATATATT
Found at i:97435522 original size:33 final size:33
Alignment explanation
Indices: 97435483--97435552 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
97435473 TTGTATTACT
*
97435483 CTTTTTTGTATGTCATGCATTATTTAATTATTA
1 CTTTTTTGTATATCATGCATTATTTAATTATTA
97435516 CTTTTTTGTATATCATGCATTATTTAATTATTA
1 CTTTTTTGTATATCATGCATTATTTAATTATTA
97435549 CTTT
1 CTTT
97435553 GTATGTTTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.24, C:0.10, G:0.07, T:0.59
Consensus pattern (33 bp):
CTTTTTTGTATATCATGCATTATTTAATTATTA
Found at i:97439404 original size:38 final size:38
Alignment explanation
Indices: 97439353--97439448 Score: 111
Period size: 40 Copynumber: 2.5 Consensus size: 38
97439343 CCAACTCTGT
* * * *
97439353 CCATCCCAACACACCATGTGGGGATAAAATCGACCTAC
1 CCATCCCTACACACCATATAGGGATAAAATCGACCCAC
* *
97439391 CCATCCCTACACACCAAATATAGGGATAATATCGACCCAT
1 CCATCCCTACACACC--ATATAGGGATAAAATCGACCCAC
*
97439431 CCAACCCTACACACCATA
1 CCATCCCTACACACCATA
97439449 AGGTACCGCA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
38 17 0.35
40 32 0.65
ACGTcount: A:0.36, C:0.36, G:0.10, T:0.17
Consensus pattern (38 bp):
CCATCCCTACACACCATATAGGGATAAAATCGACCCAC
Found at i:97439881 original size:18 final size:19
Alignment explanation
Indices: 97439858--97439904 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
97439848 CCTAAATTCT
97439858 CACACACCCGTGTGGT-CC
1 CACACACCCGTGTGGTGCC
* *
97439876 CACACACACGTGTGTTGCC
1 CACACACCCGTGTGGTGCC
97439895 CACACGACCC
1 CACAC-ACCC
97439905 AATTGGTCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 14 0.58
19 7 0.29
20 3 0.12
ACGTcount: A:0.21, C:0.45, G:0.19, T:0.15
Consensus pattern (19 bp):
CACACACCCGTGTGGTGCC
Found at i:97456933 original size:40 final size:39
Alignment explanation
Indices: 97456883--97456970 Score: 106
Period size: 39 Copynumber: 2.2 Consensus size: 39
97456873 CAAATCCAAT
* *
97456883 CACCACCACAAAGT-ATGCAGGACTTTAAGCTCGGATATAA
1 CACCAGCACAAA-TCATGCAGGACTTT-AGCTCGAATATAA
* * *
97456923 TACCAGCACAAATCCTGCGGGACTTTAGCTCGAATATAA
1 CACCAGCACAAATCATGCAGGACTTTAGCTCGAATATAA
97456962 CACCAGCAC
1 CACCAGCAC
97456971 GAATGCCTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
39 21 0.51
40 20 0.49
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.19
Consensus pattern (39 bp):
CACCAGCACAAATCATGCAGGACTTTAGCTCGAATATAA
Found at i:97456967 original size:39 final size:39
Alignment explanation
Indices: 97456914--97457200 Score: 423
Period size: 39 Copynumber: 7.4 Consensus size: 39
97456904 ACTTTAAGCT
* * * *
97456914 CGGATATAATACCAGCACAAAT-CCTGCGGGACTTTAGCT
1 CGGATATAACACCAGCACGAATGCCTTCGGGAC-TTAGCC
* * *
97456953 CGAATATAACACCAGCACGAATGCCTTTGGGGCTTAGCC
1 CGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCC
*
97456992 CGGATATAACACTAGCACGAATGCCTTCGGGACTTAGCC
1 CGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCC
*
97457031 CGGATATAACACCAGCACGAATGCCTTCGGGACTTAACC
1 CGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCC
**
97457070 TAGATATAACACCAGCACGAATGCCTTCGGGACTTAGCC
1 CGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCC
** *
97457109 CGGATATAACACCAGCTTGAATGCCTTCAGGACTTAGCC
1 CGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCC
*
97457148 CGGATATAACACCAACACGAATGCCTTCGGGACTTAGCC
1 CGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCC
97457187 CGGATATAACACCA
1 CGGATATAACACCA
97457201 TTATAAAGTC
Statistics
Matches: 222, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 215 0.97
40 7 0.03
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (39 bp):
CGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCC
Found at i:97457306 original size:28 final size:28
Alignment explanation
Indices: 97457273--97457345 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
97457263 ATTTAATCAT
*
97457273 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGTCATTC
* *
97457301 TCAATATCTCGCACATTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGTCATTC
* *
97457329 TAAATATTTCGTACACT
1 TCAATATTTCGCACACT
97457346 GAGTACCATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGTCATTC
Found at i:97459882 original size:33 final size:33
Alignment explanation
Indices: 97459840--97459902 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
97459830 CGGAATAAAG
97459840 ATAGAACATGATAATGGTTCCTTATGCCTCGGT
1 ATAGAACATGATAATGGTTCCTTATGCCTCGGT
97459873 ATAGAACATGATAATGGTTCCTTATGCCTC
1 ATAGAACATGATAATGGTTCCTTATGCCTC
97459903 AGTAGTAGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (33 bp):
ATAGAACATGATAATGGTTCCTTATGCCTCGGT
Found at i:97465160 original size:30 final size:30
Alignment explanation
Indices: 97465126--97465187 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
97465116 CTTAACAAGT
97465126 AAATGCCTATAAAATAATAAAAAAATTAAC
1 AAATGCCTATAAAATAATAAAAAAATTAAC
* *
97465156 AAATGCCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTATAAAATAATAAAAAAATTAAC
97465186 AA
1 AA
97465188 GAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.61, C:0.11, G:0.03, T:0.24
Consensus pattern (30 bp):
AAATGCCTATAAAATAATAAAAAAATTAAC
Done.