Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 297 of 343
Found at i:97470883 original size:12 final size:13
Alignment explanation
Indices: 97470841--97470888 Score: 50
Period size: 12 Copynumber: 3.9 Consensus size: 13
97470831 AGATACCTAA
97470841 ATAATATTAAAAT
1 ATAATATTAAAAT
*
97470854 ATACATA--ATAAT
1 ATA-ATATTAAAAT
97470866 AT-ATA-TAAAAT
1 ATAATATTAAAAT
97470877 ATAATATTAAAA
1 ATAATATTAAAA
97470889 ACTTATGTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
10 3 0.10
11 6 0.21
12 9 0.31
13 8 0.28
14 3 0.10
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (13 bp):
ATAATATTAAAAT
Found at i:97471293 original size:3 final size:3
Alignment explanation
Indices: 97471281--97471333 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
97471271 AAAAAAAAAT
* * * * *
97471281 TAA TACA TAA TAA TAA TAA TGA TAA TAA TAA CAA TAT TAA TGA TAT
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
97471327 TAA TAA T
1 TAA TAA T
97471334 TCAAAAATAA
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:97479068 original size:12 final size:13
Alignment explanation
Indices: 97479026--97479073 Score: 50
Period size: 12 Copynumber: 3.9 Consensus size: 13
97479016 AGATACCTAA
97479026 ATAATATTAAAAT
1 ATAATATTAAAAT
*
97479039 ATACATA--ATAAT
1 ATA-ATATTAAAAT
97479051 AT-ATA-TAAAAT
1 ATAATATTAAAAT
97479062 ATAATATTAAAA
1 ATAATATTAAAA
97479074 ACTTATGTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
10 3 0.10
11 6 0.21
12 9 0.31
13 8 0.28
14 3 0.10
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (13 bp):
ATAATATTAAAAT
Found at i:97479503 original size:21 final size:21
Alignment explanation
Indices: 97479474--97479529 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
97479464 ATTAACACAT
97479474 AATAATAATGATAATAATAAC
1 AATAATAATGATAATAATAAC
* *
97479495 AATATTAATGATATTAATAATTC
1 AATAATAATGATAATAATAA--C
*
97479518 AAAAATAATGAT
1 AATAATAATGAT
97479530 GATATTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 18 0.62
23 11 0.38
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (21 bp):
AATAATAATGATAATAATAAC
Found at i:97483243 original size:15 final size:15
Alignment explanation
Indices: 97483223--97483253 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
97483213 ATTTCATTAG
*
97483223 TATGTCTTTTGTATT
1 TATGTCTTTTATATT
97483238 TATGTCTTTTATATT
1 TATGTCTTTTATATT
97483253 T
1 T
97483254 TACATGCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.10, T:0.68
Consensus pattern (15 bp):
TATGTCTTTTATATT
Found at i:97484728 original size:23 final size:23
Alignment explanation
Indices: 97484698--97484749 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
97484688 TGTGTCGTAC
97484698 GCCGTGTGATCAACGAAGGTCAA
1 GCCGTGTGATCAACGAAGGTCAA
* *
97484721 GCCGTGTGATCGACGAAGGTCAG
1 GCCGTGTGATCAACGAAGGTCAA
97484744 GCCGTG
1 GCCGTG
97484750 CGCAAGACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.23, C:0.23, G:0.37, T:0.17
Consensus pattern (23 bp):
GCCGTGTGATCAACGAAGGTCAA
Found at i:97487042 original size:37 final size:36
Alignment explanation
Indices: 97486996--97487106 Score: 110
Period size: 37 Copynumber: 3.2 Consensus size: 36
97486986 ATTCCAAAAA
97486996 TAATATTATCTTAATAGTTTAATATTAAATTTAATT
1 TAATATTATCTTAATAGTTTAATATTAAATTTAATT
* *
97487032 TAATACTTATCTAAATAGTATT-TTATT-AATTTAATAT
1 TAATA-TTATCTTAATAGT-TTAATATTAAATTTAAT-T
* *
97487069 TAA-AGTA-ATT-AT--TTTAATATTAAATTTAATT
1 TAATATTATCTTAATAGTTTAATATTAAATTTAATT
97487100 TAATATT
1 TAATATT
97487107 TATTGTGATA
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
30 2 0.03
31 9 0.15
32 10 0.16
33 2 0.03
34 1 0.02
35 2 0.03
36 14 0.23
37 20 0.32
38 2 0.03
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (36 bp):
TAATATTATCTTAATAGTTTAATATTAAATTTAATT
Found at i:97487095 original size:68 final size:69
Alignment explanation
Indices: 97487013--97487141 Score: 192
Period size: 68 Copynumber: 1.9 Consensus size: 69
97487003 ATCTTAATAG
*
97487013 TTTAATATTAAATTTAATTTAATACTTA-TCT-A-AATAGTATTTTATTAATTTAATATTAAAGT
1 TTTAATATTAAATTTAATTTAATACTTATTCTGATAA-A-TATTATATTAATTTAATATTAAAGT
97487075 AATTAT
64 AATTAT
* *
97487081 TTTAATATTAAATTTAATTTAATATTTATTGTGATAAATATTATATTAATTTAATATTAAA
1 TTTAATATTAAATTTAATTTAATACTTATTCTGATAAATATTATATTAATTTAATATTAAA
97487142 ATGATTAAGT
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
68 27 0.49
69 24 0.44
70 2 0.04
71 2 0.04
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (69 bp):
TTTAATATTAAATTTAATTTAATACTTATTCTGATAAATATTATATTAATTTAATATTAAAGTAA
TTAT
Found at i:97489497 original size:27 final size:26
Alignment explanation
Indices: 97489457--97489587 Score: 151
Period size: 27 Copynumber: 4.9 Consensus size: 26
97489447 AGGAAGCGTC
*
97489457 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTG-T
*
97489484 CTGGTGGCTCTGCCAC-ATATATTTGT
1 CTGGTGGCTCTGCCACAAT-TATCTGT
* *
97489510 CCTGGTGGCTATGCCACAACTATCTGT
1 -CTGGTGGCTCTGCCACAATTATCTGT
97489537 CCTGGTGGCTCTGCCAC-ATATATCTGTT
1 -CTGGTGGCTCTGCCACAAT-TATCTG-T
97489565 CTGGTGGCTCTGCCACAA-TATCT
1 CTGGTGGCTCTGCCACAATTATCT
97489588 TTATCTGGTG
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
26 9 0.10
27 79 0.87
28 3 0.03
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATTATCTGT
Found at i:97489542 original size:54 final size:53
Alignment explanation
Indices: 97489454--97489597 Score: 209
Period size: 54 Copynumber: 2.7 Consensus size: 53
97489444 TGGAGGAAGC
*
97489454 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTT
1 GTCCTGGTGGCTATGCCACAA-TATCTGATCTGGTGGCTCTGCCACATATATCT
97489508 GTCCTGGTGGCTATGCCACAACTATCTG-TCCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TATCTGAT-CTGGTGGCTCTGCCACATATATCT
* * *
97489562 GTTCTGGTGGCTCTGCCACAATATCTTTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATATC-TGATCTGGTG
97489598 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
53 5 0.06
54 76 0.93
55 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.35
Consensus pattern (53 bp):
GTCCTGGTGGCTATGCCACAATATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:97489594 original size:27 final size:26
Alignment explanation
Indices: 97489457--97489614 Score: 149
Period size: 27 Copynumber: 5.9 Consensus size: 26
97489447 AGGAAGCGTC
* **
97489457 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTTTT
*
97489484 CTGGTGGCTCTGCCACATATAT-TTGTC
1 CTGGTGGCTCTGCCACA-ATATCTT-TT
* * *
97489511 CTGGTGGCTATGCCACAACTATCTGTC
1 CTGGTGGCTCTGCCACAA-TATCTTTT
*
97489538 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTTTT
97489565 CTGGTGGCTCTGCCACAATATCTTTAT
1 CTGGTGGCTCTGCCACAATATCTTT-T
* *
97489592 CTGGTGACT-TCGTCACAATATCT
1 CTGGTGGCTCT-GCCACAATATCT
97489615 GGCAGCCTCG
Statistics
Matches: 113, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
26 10 0.09
27 100 0.88
28 3 0.03
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTTTT
Found at i:97489609 original size:81 final size:80
Alignment explanation
Indices: 97489454--97489615 Score: 213
Period size: 81 Copynumber: 2.0 Consensus size: 80
97489444 TGGAGGAAGC
* *
97489454 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTTGTCCTGGTGGC
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTTATCCTGGTGAC
97489519 TATGCCACAACTATCT
66 TATGCCACAA-TATCT
* * *
97489535 GTCCTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACAATATCTTTAT-CTGGTG
1 GTCCTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCAC-ATATATTTATCCTGGTG
*
97489598 ACT-TCGTCACAATATCT
64 ACTAT-GCCACAATATCT
97489615 G
1 G
97489616 GCAGCCTCGC
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
80 9 0.12
81 55 0.76
82 8 0.11
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.35
Consensus pattern (80 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTTATCCTGGTGAC
TATGCCACAATATCT
Found at i:97492637 original size:39 final size:40
Alignment explanation
Indices: 97492555--97492645 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 40
97492545 TAAAAACTAA
* * **
97492555 ATGTAATTTTTCCTAAAGTAATGTCTTGTGGCCAAAAGCT
1 ATGTAATTTTGCCTAAAGAAATGTCTTGTGGCCAAAAAAT
**
97492595 ATGTAATTTTGCCT-AAGAAATGTCTTGTGGTGAAAAAAT
1 ATGTAATTTTGCCTAAAGAAATGTCTTGTGGCCAAAAAAT
97492634 ATGTAATTTTGC
1 ATGTAATTTTGC
97492646 ATTTCATTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
39 32 0.71
40 13 0.29
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (40 bp):
ATGTAATTTTGCCTAAAGAAATGTCTTGTGGCCAAAAAAT
Found at i:97492744 original size:10 final size:10
Alignment explanation
Indices: 97492729--97492776 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
97492719 ATATATTTGT
97492729 TTTATAATTA
1 TTTATAATTA
97492739 TTTATAA-TA
1 TTTATAATTA
97492748 TTTAT-ATTA
1 TTTATAATTA
97492757 TGTTAT-ATTA
1 T-TTATAATTA
97492767 TATTATAATT
1 T-TTATAATT
97492777 TTGATATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
8 1 0.03
9 10 0.29
10 20 0.59
11 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (10 bp):
TTTATAATTA
Found at i:97492772 original size:29 final size:30
Alignment explanation
Indices: 97492730--97492789 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 30
97492720 TATATTTGTT
97492730 TTATAATTATTTATAATATTT-ATAT-TATG
1 TTATAATTATTTATAAT-TTTGATATATATG
97492759 TTAT-ATTATATTATAATTTTGATATATATG
1 TTATAATTAT-TTATAATTTTGATATATATG
97492789 T
1 T
97492790 ATGAGATGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
28 8 0.29
29 15 0.54
30 5 0.18
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (30 bp):
TTATAATTATTTATAATTTTGATATATATG
Found at i:97494257 original size:29 final size:28
Alignment explanation
Indices: 97494209--97494263 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
97494199 TATAATTTTA
97494209 TTTTATTTTATTATAATTTGGCCCTATT
1 TTTTATTTTATTATAATTTGGCCCTATT
* * *
97494237 TTTTATTCTTGTTTTAATTTGGTCCTA
1 TTTTATT-TTATTATAATTTGGCCCTA
97494264 GCTGCTATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (28 bp):
TTTTATTTTATTATAATTTGGCCCTATT
Found at i:97494466 original size:28 final size:28
Alignment explanation
Indices: 97494426--97494480 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
97494416 TTTAGTCCTT
97494426 TTTTAAAAATTTTTATATAATTTATTTA
1 TTTTAAAAATTTTTATATAATTTATTTA
* *
97494454 TTTTAAATATTTTTATATTATTTATTT
1 TTTTAAAAATTTTTATATAATTTATTT
97494481 TTACTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (28 bp):
TTTTAAAAATTTTTATATAATTTATTTA
Found at i:97494468 original size:15 final size:15
Alignment explanation
Indices: 97494428--97494546 Score: 54
Period size: 15 Copynumber: 8.1 Consensus size: 15
97494418 TAGTCCTTTT
*
97494428 TTAAAAATTTTTATA
1 TTAAATATTTTTATA
*
97494443 -T-AAT-TTATTTATT
1 TTAAATATT-TTTATA
97494456 TTAAATATTTTTATA
1 TTAAATATTTTTATA
**
97494471 TTATTTATTTTTACTA
1 TTAAATATTTTTA-TA
* *
97494487 -AAAACATTATTTATA
1 TTAAATATT-TTTATA
* *
97494502 -TAAAAATTATTATA
1 TTAAATATTTTTATA
*
97494516 -TATATATTTTTAT-
1 TTAAATATTTTTATA
* *
97494529 CTAAGTATTATTTATA
1 TTAAATATT-TTTATA
97494545 TT
1 TT
97494547 CTATTAGACA
Statistics
Matches: 77, Mismatches: 18, Indels: 17
0.69 0.16 0.15
Matches are distributed among these distances:
12 2 0.03
13 7 0.09
14 23 0.30
15 36 0.47
16 9 0.12
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (15 bp):
TTAAATATTTTTATA
Found at i:97494488 original size:28 final size:28
Alignment explanation
Indices: 97494429--97494504 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 28
97494419 AGTCCTTTTT
*
97494429 TAAAAATTTTTATATAATTTATTTATTT
1 TAAAAATTTTTATATAATTTATTTATTC
* *
97494457 TAAATATTTTTATATTATTTATTT-TTAC
1 TAAAAATTTTTATATAATTTATTTATT-C
97494485 TAAAAACATTATTTATATAA
1 T-AAAA-ATT-TTTATATAA
97494505 AAATTATTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
27 2 0.05
28 23 0.59
29 3 0.08
30 3 0.08
31 8 0.21
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (28 bp):
TAAAAATTTTTATATAATTTATTTATTC
Found at i:97494513 original size:18 final size:18
Alignment explanation
Indices: 97494470--97494521 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
97494460 ATATTTTTAT
*
97494470 ATTATTTATTTTTACTAAAA
1 ATTA-TTATTTATA-TAAAA
*
97494490 A-CATTATTTATATAAAA
1 ATTATTATTTATATAAAA
*
97494507 ATTATTATATATATA
1 ATTATTATTTATATA
97494522 TTTTTATCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 6 0.22
18 19 0.70
19 1 0.04
20 1 0.04
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTATTATTTATATAAAA
Found at i:97494517 original size:16 final size:16
Alignment explanation
Indices: 97494487--97494519 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97494477 ATTTTTACTA
97494487 AAAACATTATTTATAT
1 AAAACATTATTTATAT
97494503 AAAA-ATTATTATATAT
1 AAAACATTATT-TATAT
97494519 A
1 A
97494520 TATTTTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
AAAACATTATTTATAT
Found at i:97494607 original size:17 final size:16
Alignment explanation
Indices: 97494556--97494646 Score: 77
Period size: 14 Copynumber: 5.8 Consensus size: 16
97494546 TCTATTAGAC
*
97494556 ATTTTATCA-TATATT
1 ATTTTATTATTATATT
*
97494571 ATGTTATT-TTAATATAT
1 ATTTTATTATT-ATAT-T
97494588 ATTTTATTCATTATATT
1 ATTTTATT-ATTATATT
97494605 ATTTTTATTA-TATATT
1 A-TTTTATTATTATATT
*
97494621 A-TATATTATTAT-TT
1 ATTTTATTATTATATT
97494635 A-TTTATTATTAT
1 ATTTTATTATTAT
97494647 GTACACTTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
14 19 0.30
15 10 0.16
16 11 0.17
17 11 0.17
18 11 0.17
19 2 0.03
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (16 bp):
ATTTTATTATTATATT
Found at i:97506672 original size:44 final size:44
Alignment explanation
Indices: 97506622--97507356 Score: 776
Period size: 44 Copynumber: 16.7 Consensus size: 44
97506612 CAGATCTGTA
* * * *
97506622 TCTCTGTATTTATAGAGAGCAGATCGAAGATAGCTA-ATCTAGCG
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGC-ACATCTGGCG
* * ** *
97506666 TCTCTGTATTGATAGAGAGCAGATCGAAGATAGCTGATTTGGCG
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* *
97506710 TCTCTGTATTGACGGAGAGCAGATCGAAGAAATCACATCTGGCG
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* *** * * *
97506754 TCTCTGTATTGACAGAGAGCAGATCGAAGATAGTTGATTTAGTG
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* *
97506798 TCTCTGTATTAGACCGGGAGCAGATCGAAGAAAGCACATCTGGCG
1 TCTCTGTATT-GACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* * *
97506843 TCTCTGTATTGACAAAGAGCAGATCGAAGATAGCTA-ATTTGGCG
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGC-ACATCTGGCG
*
97506887 TCTCTGTATTAGACA-AGGAGCAGATCAAAGAAAGCACATCTGGCG
1 TCTCTGTATT-GACAGA-GAGCAGATCGAAGAAAGCACATCTGGCG
* *
97506932 TCTCCGTATTGACAGGGAGCAGATCGAAGAAAGCACATCTGGCG
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
** * ** *
97506976 TCTCTGTATTGACAGAGAATAGATCGAAGATAGCTGATTTGGCG
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* * * * *
97507020 TTTCTGTATTGACGGAGAGTAGATCGAAGAAAGCACATCTAGCA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* * * * * * *
97507064 TTTCTGTATTAAAAAAAAGCAGATCGAAGAAA-CAGATTTGGCG
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* * *
97507107 TCTCTGTATTGACGGAGAGCAGATCGAAGAAAGCATATCTGGCC
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* ** *
97507151 TCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTGATTTGGCG
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* *
97507195 TCTCTGTATTAGACAGGGAGCAGATCGAAGAAAGCACATCTGGCA
1 TCTCTGTATT-GACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* * * * ** *
97507240 TCTTTGTATTGATAGAGAGCAGACCGAAGATAGCTGATTTGGCG
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* * * *
97507284 TTTCTATATTGACAGAGAGCAGATCGAAGAAAGCACATCTAGCA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
* * * *
97507328 TTTCTGTATTAACAGAAAGCATATCGAAG
1 TCTCTGTATTGACAGAGAGCAGATCGAAG
97507357 TTAGTTGATT
Statistics
Matches: 570, Mismatches: 112, Indels: 18
0.81 0.16 0.03
Matches are distributed among these distances:
43 33 0.06
44 428 0.75
45 109 0.19
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (44 bp):
TCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGGCG
Found at i:97506866 original size:133 final size:133
Alignment explanation
Indices: 97506622--97507356 Score: 827
Period size: 133 Copynumber: 5.6 Consensus size: 133
97506612 CAGATCTGTA
* * * * *
97506622 TCTCTGTATTTATAGAGAGCAGATCGAAGATAGCTAATCTAGCGTCTCTGTATT-GATAGAGAGC
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTCATCTAGCGTCTCTGTATTAGACAGGGAGC
* ** * * * * * *
97506686 AGATCGAAGATAGCTGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGAAATCACATCTG
66 AGATCGAAGAAAGCACATCTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGATTTG
97506751 GCG
131 GCG
* * * * *
97506754 TCTCTGTATTGACAGAGAGCAGATCGAAGATAGTTGATTTAGTGTCTCTGTATTAGACCGGGAGC
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTCATCTAGCGTCTCTGTATTAGACAGGGAGC
*
97506819 AGATCGAAGAAAGCACATCTGGCGTCTCTGTATTGACAAAGAGCAGATCGAAGATAGCTA-ATTT
66 AGATCGAAGAAAGCACATCTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGC-AGATTT
97506883 GGCG
130 GGCG
* * * * *
97506887 TCTCTGTATTAGACA-AGGAGCAGATCAAAGAAAGCACATCTGGCGTCTCCGTATT-GACAGGGA
1 TCTCTGTATT-GACAGA-GAGCAGATCGAAGATAGCTCATCTAGCGTCTCTGTATTAGACAGGGA
** *
97506950 GCAGATCGAAGAAAGCACATCTGGCGTCTCTGTATTGACAGAGAATAGATCGAAGATAGCTGATT
64 GCAGATCGAAGAAAGCACATCTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGATT
97507015 TGGCG
129 TGGCG
* * * * * * * * ***
97507020 TTTCTGTATTGACGGAGAGTAGATCGAAGAAAGCACATCTAGCATTTCTGTATTA-AAAAAAAGC
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTCATCTAGCGTCTCTGTATTAGACAGGGAGC
* * * * * *
97507084 AGATCGAAGAAA-CAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGAAAGCATATCTG
66 AGATCGAAGAAAGCACATCTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGATTTG
*
97507148 GCC
131 GCG
* * *
97507151 TCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTGATTTGGCGTCTCTGTATTAGACAGGGAGC
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTCATCTAGCGTCTCTGTATTAGACAGGGAGC
* * * * *
97507216 AGATCGAAGAAAGCACATCTGGCATCTTTGTATTGATAGAGAGCAGACCGAAGATAGCTGATTTG
66 AGATCGAAGAAAGCACATCTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGATTTG
97507281 GCG
131 GCG
* * * * * * **
97507284 TTTCTATATTGACAGAGAGCAGATCGAAGAAAGCACATCTAGCATTTCTGTATTA-ACAGAAAGC
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTCATCTAGCGTCTCTGTATTAGACAGGGAGC
*
97507348 ATATCGAAG
66 AGATCGAAG
97507357 TTAGTTGATT
Statistics
Matches: 502, Mismatches: 92, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
131 90 0.18
132 132 0.26
133 246 0.49
134 34 0.07
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (133 bp):
TCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTCATCTAGCGTCTCTGTATTAGACAGGGAGC
AGATCGAAGAAAGCACATCTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGATTTG
GCG
Found at i:97507356 original size:177 final size:176
Alignment explanation
Indices: 97506622--97507381 Score: 842
Period size: 177 Copynumber: 4.3 Consensus size: 176
97506612 CAGATCTGTA
* * * * * *
97506622 TCTCTGTATTTATAGAGAGCAGATCGAAGATAGCTAATCTAGCGTCTCTGTATTGATAGAGAGCA
1 TCTCTGTATTAACAGAGAGCAGATCGAAGATAGCTGATTTGGCGTCTCTGTATTGACAGAGAGCA
* ** * * * *
97506687 GATCGAAGATAGCTGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGAAATCACATCTGG
66 GATCGAAGAAAGCACATCTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGG
* *** * *
97506752 CGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGTTGATTTAGTG
131 CGTCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTAGCG
* * * ** * *
97506798 TCTCTGTATTAGACCGGGAGCAGATCGAAGAAAGCACATCTGGCGTCTCTGTATTGACAAAGAGC
1 TCTCTGTATTA-ACAGAGAGCAGATCGAAGATAGCTGATTTGGCGTCTCTGTATTGACAGAGAGC
* * * *
97506863 AGATCGAAGATAGCTA-ATTTGGCGTCTCTGTATTAGACA-AGGAGCAGATCAAAGAAAGCACAT
65 AGATCGAAGAAAGC-ACATCTGGCATCTCTGTATT-GACAGA-GAGCAGATCGAAGAAAGCACAT
* * *
97506926 CTGGCGTCTCCGTATTGACAGGGAGCAGATCGAAGAAAGCACATCTGGCG
127 CTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTAGCG
* ** * * *
97506976 TCTCTGTATTGACAGAGAATAGATCGAAGATAGCTGATTTGGCGTTTCTGTATTGACGGAGAGTA
1 TCTCTGTATTAACAGAGAGCAGATCGAAGATAGCTGATTTGGCGTCTCTGTATTGACAGAGAGCA
* * * * * * * *
97507041 GATCGAAGAAAGCACATCTAGCATTTCTGTATTAAAAAAAAGCAGATCGAAGAAA-CAGATTTGG
66 GATCGAAGAAAGCACATCTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGG
* * * *
97507105 CGTCTCTGTATTGACGGAGAGCAGATCGAAGAAAGCATATCTGGCC
131 CGTCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTAGCG
* *
97507151 TCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTGATTTGGCGTCTCTGTATTAGACAGGGAGC
1 TCTCTGTATTAACAGAGAGCAGATCGAAGATAGCTGATTTGGCGTCTCTGTATT-GACAGAGAGC
* * * * ** *
97507216 AGATCGAAGAAAGCACATCTGGCATCTTTGTATTGATAGAGAGCAGACCGAAGATAGCTGATTTG
65 AGATCGAAGAAAGCACATCTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTG
* * *
97507281 GCGTTTCTATATTGACAGAGAGCAGATCGAAGAAAGCACATCTAGCA
130 GCGTCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTAGCG
* * * * *
97507328 TTTCTGTATTAACAGAAAGCATATCGAAGTTAGTTGATTTGGCGTCTCTGTATT
1 TCTCTGTATTAACAGAGAGCAGATCGAAGATAGCTGATTTGGCGTCTCTGTATT
97507382 AGGTGGGTGC
Statistics
Matches: 496, Mismatches: 80, Indels: 15
0.84 0.14 0.03
Matches are distributed among these distances:
175 99 0.20
176 81 0.16
177 242 0.49
178 74 0.15
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (176 bp):
TCTCTGTATTAACAGAGAGCAGATCGAAGATAGCTGATTTGGCGTCTCTGTATTGACAGAGAGCA
GATCGAAGAAAGCACATCTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTGG
CGTCTCTGTATTGACAGAGAGCAGATCGAAGAAAGCACATCTAGCG
Found at i:97509000 original size:40 final size:40
Alignment explanation
Indices: 97508963--97509187 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
97508953 GCTACTCGTT
* *
97508963 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
97509003 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
97509043 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
97509083 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
97509122 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
97509163 CAAA-GCCTTCGGGTCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
97509188 CATCATTCGA
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 116 0.72
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:97509147 original size:119 final size:120
Alignment explanation
Indices: 97508965--97509187 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
97508955 TACTCGTTCA
* *
97508965 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCGGAT
* *
97509030 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
97509085 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCC-TTCGGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTTCGGA-CTTAACCCGG
* * * *
97509147 ATATGGTCACTTAGCACAAAGCCTTCGGGTCTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
97509188 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 6 0.07
119 62 0.70
120 20 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:97510384 original size:56 final size:56
Alignment explanation
Indices: 97510317--97510492 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
97510307 TATTAGTTTA
97510317 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
97510373 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
97510429 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
97510485 TTGCCCAT
1 TTGCCCAT
97510493 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:97512054 original size:28 final size:27
Alignment explanation
Indices: 97512016--97512069 Score: 90
Period size: 28 Copynumber: 2.0 Consensus size: 27
97512006 TTTAGTCCTT
97512016 TTTTAAAATTTTTATATAATTTATTTA
1 TTTTAAAATTTTTATATAATTTATTTA
*
97512043 TTTTAAATATTTTTATATTATTTATTT
1 TTTTAAA-ATTTTTATATAATTTATTT
97512070 TTACTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTAAAATTTTTATATAATTTATTTA
Found at i:97512077 original size:28 final size:27
Alignment explanation
Indices: 97512019--97512078 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
97512009 AGTCCTTTTT
*
97512019 TAAAATTTTTATATAATTTATTTATTT
1 TAAAATTTTTATATAATTTATTTATTC
*
97512046 TAAATATTTTTATATTATTTATTT-TTAC
1 TAAA-ATTTTTATATAATTTATTTATT-C
97512074 TAAAA
1 TAAAA
97512079 ACATTATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 7 0.24
28 22 0.76
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (27 bp):
TAAAATTTTTATATAATTTATTTATTC
Found at i:97512102 original size:18 final size:18
Alignment explanation
Indices: 97512059--97512109 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
97512049 ATATTTTTAT
*
97512059 ATTATTTATTTTTACTAAAA
1 ATTA-TTATTTATA-TAAAA
*
97512079 A-CATTATTTATATAAAA
1 ATTATTATTTATATAAAA
*
97512096 ATTATTATATATAT
1 ATTATTATTTATAT
97512110 TTTTTATCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 6 0.23
18 18 0.69
19 1 0.04
20 1 0.04
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTATTATTTATATAAAA
Found at i:97512106 original size:16 final size:16
Alignment explanation
Indices: 97512076--97512108 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97512066 ATTTTTACTA
97512076 AAAACATTATTTATAT
1 AAAACATTATTTATAT
97512092 AAAA-ATTATTATATAT
1 AAAACATTATT-TATAT
97512108 A
1 A
97512109 TTTTTTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
AAAACATTATTTATAT
Found at i:97512205 original size:30 final size:29
Alignment explanation
Indices: 97512156--97512213 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
97512146 TTTATCATAT
* *
97512156 ATTATGTTATTTTAATATATATTTTATTC
1 ATTACGTTATTTTAATATATATTATATTC
*
97512185 ATTACGTTATTTTTATTATATATTATATT
1 ATTACGTTA-TTTTAATATATATTATATT
97512214 TTATTATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (29 bp):
ATTACGTTATTTTAATATATATTATATTC
Found at i:97512225 original size:30 final size:29
Alignment explanation
Indices: 97512155--97512233 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 29
97512145 TTTTATCATA
* *
97512155 TATTATGTTA-TTTTAATATATATTTTATT
1 TATTAT-TTATTTTTATTATATATTATATT
* *
97512184 CATTACGTTATTTTTATTATATATTATATTT
1 TATTA-TTTATTTTTATTATATATTATA-TT
97512215 TATTATTTATTTATTATTA
1 TATTATTTATTT-TTATTA
97512234 CGTACACTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
29 7 0.17
30 21 0.52
31 12 0.30
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (29 bp):
TATTATTTATTTTTATTATATATTATATT
Found at i:97512245 original size:47 final size:48
Alignment explanation
Indices: 97512145--97512245 Score: 109
Period size: 47 Copynumber: 2.1 Consensus size: 48
97512135 CTATTAGACA
*
97512145 TTTTATCATATATTATGTTATTTTAATATATATTTTATTCATTACGTTAT
1 TTTTATCATATATTA--TTATTTTAATATATATTTTATTCATTACGTCAT
* * *
97512195 TTTTATTATATATTA-TATTTTATTATTTA-TTTATT-ATTACGTACACT
1 TTTTATCATATATTATTATTTTAATATATATTTTATTCATTACGT-CA-T
97512242 TTTT
1 TTTT
97512246 CTAAATTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
45 7 0.16
46 7 0.16
47 17 0.38
50 14 0.31
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (48 bp):
TTTTATCATATATTATTATTTTAATATATATTTTATTCATTACGTCAT
Found at i:97524131 original size:46 final size:45
Alignment explanation
Indices: 97524081--97524214 Score: 130
Period size: 46 Copynumber: 2.9 Consensus size: 45
97524071 ACAGATTCGG
* * *
97524081 CTCATAAGAGCTTACTGATTCGGCTCGTAAGAGCTTATTGTTTCAA
1 CTCATAAGAGCTTACTGATTCAGCTCGAAAGAGCTTACTG-TTCAA
* * *
97524127 CTCAT-TGAAGCTTACTGATTCAGCTCGAAAGCGCTTACTGTTCAG
1 CTCATAAG-AGCTTACTGATTCAGCTCGAAAGAGCTTACTGTTCAA
* *
97524172 CTCA-ATAGAGCTTACCGTTTTCAGCTC-AATAGAGCTTACTGTT
1 CTCATA-AGAGCTTACTG-ATTCAGCTCGAA-AGAGCTTACTGTT
97524215 TATCAACTCA
Statistics
Matches: 73, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
45 19 0.26
46 54 0.74
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
CTCATAAGAGCTTACTGATTCAGCTCGAAAGAGCTTACTGTTCAA
Found at i:97524173 original size:22 final size:22
Alignment explanation
Indices: 97524065--97524214 Score: 101
Period size: 23 Copynumber: 6.5 Consensus size: 22
97524055 CAGCTCGTAT
* *
97524065 GAGCTTACAGATTCGGCTC-ATAA
1 GAGCTTACTG-TTCAGCTCAAT-A
* *
97524088 GAGCTTACTGATTCGGCTC-GTAA
1 GAGCTTACTG-TTCAGCTCAAT-A
* * *
97524111 GAGCTTATTGTTTCAACTC-ATT
1 GAGCTTACTG-TTCAGCTCAATA
97524133 GAAGCTTACTGATTCAGCTCGAA-A
1 G-AGCTTACTG-TTCAGCTC-AATA
*
97524157 GCGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATA
*
97524179 GAGCTTACCGTTTTCAGCTCAATA
1 GAGCTTA-C-TGTTCAGCTCAATA
97524203 GAGCTTACTGTT
1 GAGCTTACTGTT
97524215 TATCAACTCA
Statistics
Matches: 105, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
21 2 0.02
22 19 0.18
23 62 0.59
24 21 0.20
25 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:97524196 original size:24 final size:24
Alignment explanation
Indices: 97524167--97524238 Score: 90
Period size: 24 Copynumber: 2.9 Consensus size: 24
97524157 GCGCTTACTG
97524167 TTCAGCTCAATAGAGCTTACCGTT
1 TTCAGCTCAATAGAGCTTACCGTT
*
97524191 TTCAGCTCAATAGAGCTTACTGTT
1 TTCAGCTCAATAGAGCTTACCGTT
* **
97524215 TATCAACTCAGGAGGAGCTTACCG
1 T-TCAGCTCAATA-GAGCTTACCG
97524239 ACCATGACTC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
24 24 0.59
25 8 0.20
26 9 0.22
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (24 bp):
TTCAGCTCAATAGAGCTTACCGTT
Found at i:97527980 original size:19 final size:18
Alignment explanation
Indices: 97527958--97528006 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
97527948 TTTCTGTCAC
97527958 TTTATATATTTT-TTAATTT
1 TTTATATATTTTATT--TTT
97527977 TTTATATACTTTTATTTTT
1 TTTATATA-TTTTATTTTT
97527996 TTTATA-ATTTT
1 TTTATATATTTT
97528007 CTAAAATCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 4 0.14
18 1 0.04
19 17 0.61
20 4 0.14
21 2 0.07
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTATATATTTTATTTTT
Found at i:97527993 original size:17 final size:18
Alignment explanation
Indices: 97527958--97528006 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
97527948 TTTCTGTCAC
*
97527958 TTTATATATTTTTTAATTT
1 TTTATATA-ATTTTAATTT
*
97527977 TTTATATACTTTT-ATTT
1 TTTATATAATTTTAATTT
*
97527994 TTTTTATAATTTT
1 TTTATATAATTTT
97528007 CTAAAATCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 15 0.56
18 4 0.15
19 8 0.30
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTATATAATTTTAATTT
Found at i:97528872 original size:41 final size:41
Alignment explanation
Indices: 97528824--97528907 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
97528814 AAGAATAAAA
97528824 AATTCATTGATAATAGGCCCTATTCATGCAAGTAAAAAACT
1 AATTCATTGATAATAGGCCCTATTCATGCAAGTAAAAAACT
97528865 AATTCATTGATAATAGGCCCTATTCATGCAAGTAAAAAACT
1 AATTCATTGATAATAGGCCCTATTCATGCAAGTAAAAAACT
97528906 AA
1 AA
97528908 CTAAAGATAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.29
Consensus pattern (41 bp):
AATTCATTGATAATAGGCCCTATTCATGCAAGTAAAAAACT
Found at i:97530389 original size:23 final size:21
Alignment explanation
Indices: 97530358--97530400 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
97530348 ATGTTTTTTG
*
97530358 AATTTTTTTATATTATATTAATA
1 AATTATTTTATA-TAT-TTAATA
97530381 AATTATTTTATATATTTAAT
1 AATTATTTTATATATTTAAT
97530401 TTACAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 3 0.16
23 11 0.58
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
AATTATTTTATATATTTAATA
Found at i:97531256 original size:7 final size:6
Alignment explanation
Indices: 97531226--97531255 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
97531216 ATGTTTTTAC
97531226 TTTAAA TTTAAA TTTAAA TTTAATA TTTAA
1 TTTAAA TTTAAA TTTAAA TTTAA-A TTTAA
97531256 TTTGATAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TTTAAA
Found at i:97535405 original size:15 final size:15
Alignment explanation
Indices: 97535369--97535397 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
97535359 CCACCACCGG
97535369 CCACCACCACCACTT
1 CCACCACCACCACTT
97535384 CCACCACCACCACT
1 CCACCACCACCACT
97535398 ATCACCACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.62, G:0.00, T:0.10
Consensus pattern (15 bp):
CCACCACCACCACTT
Found at i:97541372 original size:12 final size:12
Alignment explanation
Indices: 97541339--97541402 Score: 66
Period size: 12 Copynumber: 5.8 Consensus size: 12
97541329 ATACAAGTTT
**
97541339 GAAAAAAAAACC
1 GAAAAAAAATTC
97541351 GAAAAAAAATTC
1 GAAAAAAAATTC
*
97541363 GAAAAAAAATTA
1 GAAAAAAAATTC
97541375 G-AAAAAAATTC
1 GAAAAAAAATTC
97541386 ---AAAAAATT-
1 GAAAAAAAATTC
97541394 GAAAAAAAA
1 GAAAAAAAA
97541403 GTGATTTATG
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.18
11 15 0.33
12 22 0.49
ACGTcount: A:0.73, C:0.06, G:0.08, T:0.12
Consensus pattern (12 bp):
GAAAAAAAATTC
Found at i:97541402 original size:11 final size:11
Alignment explanation
Indices: 97541341--97541402 Score: 58
Period size: 11 Copynumber: 5.7 Consensus size: 11
97541331 ACAAGTTTGA
**
97541341 AAAAAAAACCG
1 AAAAAAAATTG
97541352 AAAAAAAATTCG
1 AAAAAAAATT-G
97541364 AAAAAAAATT-
1 AAAAAAAATTG
97541374 AGAAAAAAATT-
1 A-AAAAAAATTG
*
97541385 -CAAAAAATTG
1 AAAAAAAATTG
97541395 AAAAAAAA
1 AAAAAAAA
97541403 GTGATTTATG
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
9 8 0.19
10 1 0.02
11 23 0.53
12 11 0.26
ACGTcount: A:0.74, C:0.06, G:0.06, T:0.13
Consensus pattern (11 bp):
AAAAAAAATTG
Found at i:97542334 original size:21 final size:21
Alignment explanation
Indices: 97542308--97542357 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
97542298 ACATTCTTGT
97542308 AAAGAAAAAACAAAGAAAAG-A
1 AAAGAAAAAACAAA-AAAAGAA
* *
97542329 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAACAAAAAAAGAA
97542350 AAAGAAAA
1 AAAGAAAA
97542358 TGAAATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.80, C:0.04, G:0.16, T:0.00
Consensus pattern (21 bp):
AAAGAAAAAACAAAAAAAGAA
Found at i:97542343 original size:6 final size:5
Alignment explanation
Indices: 97542308--97542375 Score: 59
Period size: 5 Copynumber: 13.0 Consensus size: 5
97542298 ACATTCTTGT
* *
97542308 AAAGA AAAAA CAAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA
1 AAAGA AAAGA -AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA
97542355 AAATGA AATA-A AAAGA AAAGA
1 AAA-GA AA-AGA AAAGA AAAGA
97542376 GAGGCAAGAG
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
4 4 0.08
5 29 0.56
6 18 0.35
7 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.16, T:0.03
Consensus pattern (5 bp):
AAAGA
Found at i:97542348 original size:15 final size:14
Alignment explanation
Indices: 97542319--97542375 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
97542309 AAGAAAAAAC
97542319 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
97542335 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
97542350 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
97542366 AAAGAAAAGA
1 AAAGAAAAGA
97542376 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:97542456 original size:11 final size:12
Alignment explanation
Indices: 97542423--97542453 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
97542413 TTGAGAGAAC
97542423 TTGAAAAAGCCT
1 TTGAAAAAGCCT
97542435 TTGAAAAAGCCT
1 TTGAAAAAGCCT
97542447 TTGAAAA
1 TTGAAAA
97542454 GCCAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:97546047 original size:6 final size:6
Alignment explanation
Indices: 97546036--97546060 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
97546026 CCCAAAACCT
97546036 TCTCCA TCTCCA TCTCCA TCTCCA T
1 TCTCCA TCTCCA TCTCCA TCTCCA T
97546061 TCTTCTCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.48, G:0.00, T:0.36
Consensus pattern (6 bp):
TCTCCA
Found at i:97548729 original size:24 final size:24
Alignment explanation
Indices: 97548702--97548747 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
97548692 TGTTAGCATC
* *
97548702 ATTATTAATTTTTTTTATTTTTTT
1 ATTATTAATATTTTCTATTTTTTT
*
97548726 ATTATTACTATTTTCTATTTTT
1 ATTATTAATATTTTCTATTTTT
97548748 GCTATTGTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (24 bp):
ATTATTAATATTTTCTATTTTTTT
Found at i:97548820 original size:3 final size:3
Alignment explanation
Indices: 97548812--97549071 Score: 134
Period size: 3 Copynumber: 89.3 Consensus size: 3
97548802 TTAACCTATC
* * *
97548812 ATT ATT ATT ATT ATTT ATT ATCT -TCT A-T ATT TTT ATT ATT AGT GTT
1 ATT ATT ATT ATT A-TT ATT AT-T AT-T ATT ATT ATT ATT ATT ATT ATT
* * * * *
97548858 ATT -TC ATT ATT ATT ATAT GTT ACT ATT A-C ATT CATT ATT TTT ATT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT -ATT ATT ATT ATT
* * * * * * *
97548903 TTT ATT ATT CTT TTT ATT AAT ATT ATT TTT ACT ATT ATT -TT TTT A-T
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
97548949 ACT ATA ATT ATT CTT ATT AAT A-T ATT ATT ATT -TT CTT -TT -TT A-T
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
97548992 ATT ATT ATT A-T ATT ATT ATT ATT ATT ATT ATT GTT ATT TTCT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
* * *
97549037 -TT ATT ATT ATT ATT -GT ATT ATC ACT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
97549072 CCATATCATT
Statistics
Matches: 193, Mismatches: 46, Indels: 36
0.70 0.17 0.13
Matches are distributed among these distances:
2 22 0.11
3 161 0.83
4 10 0.05
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:97548980 original size:20 final size:21
Alignment explanation
Indices: 97548955--97549029 Score: 73
Period size: 20 Copynumber: 3.6 Consensus size: 21
97548945 TTATACTATA
97548955 ATTATTCTTATTAATA-TATT
1 ATTATTCTTATTAATATTATT
* *
97548975 ATTATTTTCTTTTTTATATTATT
1 ATTA--TTCTTATTAATATTATT
* *
97548998 ATTA-TATTATTATTATTATT
1 ATTATTCTTATTAATATTATT
*
97549018 ATTATTGTTATT
1 ATTATTCTTATT
97549030 TTCTACTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
20 20 0.45
21 6 0.14
22 10 0.23
23 8 0.18
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (21 bp):
ATTATTCTTATTAATATTATT
Found at i:97549048 original size:27 final size:26
Alignment explanation
Indices: 97548991--97549071 Score: 98
Period size: 26 Copynumber: 3.2 Consensus size: 26
97548981 TTCTTTTTTA
*
97548991 TATTATTATTATATTAT---TATTAT
1 TATTATTATTGTATTATCACTATTAT
*
97549014 TATTATTATTGTTATTTTCTACT-TTAT
1 TATTATTATTG-TATTATC-ACTATTAT
97549041 TATTATTATTGTATTATCACTATTAT
1 TATTATTATTGTATTATCACTATTAT
97549067 TATTA
1 TATTA
97549072 CCATATCATT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
23 10 0.20
24 5 0.10
25 3 0.06
26 15 0.31
27 15 0.31
28 1 0.02
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (26 bp):
TATTATTATTGTATTATCACTATTAT
Found at i:97551594 original size:99 final size:99
Alignment explanation
Indices: 97551418--97551621 Score: 381
Period size: 99 Copynumber: 2.1 Consensus size: 99
97551408 ATAAAAGAGA
*
97551418 GTTTGTATTGTATTTTGTATTGTGTTTATTTGTGTGTAATAAAATTAGACTTTGAGTTATTTTTA
1 GTTTGTATTGTATTTTGTATTGTGTTTATTTGTGTGTAATAAAATTAGAATTTGAGTTATTTTTA
*
97551483 TTACTATAATTCCAACAAGTGGTATCCGAGCTAG
66 TTACTACAATTCCAACAAGTGGTATCCGAGCTAG
97551517 GTTTGTATTGTATTTTGTATTGTGTTTATTTGTGTGTAATAAAATTAGAATTTGAGTTATTTTTA
1 GTTTGTATTGTATTTTGTATTGTGTTTATTTGTGTGTAATAAAATTAGAATTTGAGTTATTTTTA
*
97551582 TTACTACGATTCCAACAAGTGGTATCCGAGCTAG
66 TTACTACAATTCCAACAAGTGGTATCCGAGCTAG
97551616 GTTTGT
1 GTTTGT
97551622 GTTGACGTCA
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 102 1.00
ACGTcount: A:0.25, C:0.08, G:0.19, T:0.48
Consensus pattern (99 bp):
GTTTGTATTGTATTTTGTATTGTGTTTATTTGTGTGTAATAAAATTAGAATTTGAGTTATTTTTA
TTACTACAATTCCAACAAGTGGTATCCGAGCTAG
Found at i:97558784 original size:22 final size:24
Alignment explanation
Indices: 97558759--97558802 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
97558749 TAATTTCTAA
*
97558759 AAACAAA-TTTT-GTTTTTATTTC
1 AAACAAACTTTTAATTTTTATTTC
97558781 AAACAAACTTTTAATTTTTATT
1 AAACAAACTTTTAATTTTTATT
97558803 ATGATTTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 4 0.21
24 8 0.42
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.52
Consensus pattern (24 bp):
AAACAAACTTTTAATTTTTATTTC
Found at i:97563226 original size:18 final size:18
Alignment explanation
Indices: 97563200--97563240 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
97563190 TACTAAAAAC
97563200 AAAAAATAA-AATACAACT
1 AAAAAATAATAA-ACAACT
*
97563218 AAAATATAATAAACAACT
1 AAAAAATAATAAACAACT
97563236 AAAAA
1 AAAAA
97563241 CCAAAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAAAATAATAAACAACT
Found at i:97563275 original size:23 final size:23
Alignment explanation
Indices: 97563243--97563312 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 23
97563233 ACTAAAAACC
* *
97563243 AAAAATATACAATTAAATGATAA
1 AAAAAGATACAACTAAATGATAA
97563266 AAAAAGATACAACTAAA--A-AGA
1 AAAAAGATACAACTAAATGATA-A
* *
97563287 AAAAAGTTACAACTAAATGATTA
1 AAAAAGATACAACTAAATGATAA
97563310 AAA
1 AAA
97563313 GTACAAGTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 1 0.03
21 18 0.46
23 20 0.51
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.20
Consensus pattern (23 bp):
AAAAAGATACAACTAAATGATAA
Found at i:97563291 original size:21 final size:20
Alignment explanation
Indices: 97563200--97563303 Score: 70
Period size: 21 Copynumber: 5.1 Consensus size: 20
97563190 TACTAAAAAC
*
97563200 AAAAAATAAA-ATACAACTA
1 AAAAAAAAAAGATACAACTA
* * *
97563219 AAATATAATA-A-ACAACTA
1 AAAAAAAAAAGATACAACTA
* * *
97563237 AAAACCAAAAATATACAATTA
1 AAAA-AAAAAAGATACAACTA
97563258 AATGATAAAAAAAGATACAACTA
1 AA--A-AAAAAAAGATACAACTA
*
97563281 AAAAGAAAAAAGTTACAACTA
1 AAAA-AAAAAAGATACAACTA
97563302 AA
1 AA
97563304 TGATTAAAAG
Statistics
Matches: 65, Mismatches: 13, Indels: 12
0.72 0.14 0.13
Matches are distributed among these distances:
18 10 0.15
19 10 0.15
20 2 0.03
21 26 0.40
23 16 0.25
24 1 0.02
ACGTcount: A:0.68, C:0.11, G:0.04, T:0.17
Consensus pattern (20 bp):
AAAAAAAAAAGATACAACTA
Found at i:97563346 original size:47 final size:48
Alignment explanation
Indices: 97563280--97563381 Score: 145
Period size: 47 Copynumber: 2.1 Consensus size: 48
97563270 AGATACAACT
* * *
97563280 AAAAAGAAAAAAGTTACAACTAAATGA-TTAAA-AGTACAAGTAAAAAC
1 AAAAA-AAAAAAGTTACAACGAAATGACTAAAACAGTACAAATAAAAAC
97563327 AAAAAAAAAGAAGTTACAACGAAATGACTAAAACAGTACAAATAAAAAC
1 AAAAAAAAA-AAGTTACAACGAAATGACTAAAACAGTACAAATAAAAAC
97563376 AAAAAA
1 AAAAAA
97563382 GTTATAACTA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
46 4 0.08
47 21 0.43
48 4 0.08
49 20 0.41
ACGTcount: A:0.67, C:0.10, G:0.10, T:0.14
Consensus pattern (48 bp):
AAAAAAAAAAAGTTACAACGAAATGACTAAAACAGTACAAATAAAAAC
Found at i:97563374 original size:43 final size:46
Alignment explanation
Indices: 97563230--97563395 Score: 150
Period size: 44 Copynumber: 3.7 Consensus size: 46
97563220 AATATAATAA
* * *
97563230 ACAACTAAAAACCAAAAA-TATACAATTAAATGA-TAAAA-A-AAGAT
1 ACAAATAAAAACAAAAAAGT-TACAACTAAATGACTAAAAGACAAG-T
* * *
97563274 ACAACTAAAAAGAAAAAAGTTACAACTAAATGATTAAAAGTACAAGT
1 ACAAATAAAAACAAAAAAGTTACAACTAAATGACTAAAAG-ACAAGT
* * *
97563321 AAAAACAAAAA-AAAAGAAGTTACAACGAAATGACT-AAA-AC-AGT
1 ACAAATAAAAACAAAA-AAGTTACAACTAAATGACTAAAAGACAAGT
*
97563364 ACAAATAAAAACAAAAAAGTTATAACTAAATG
1 ACAAATAAAAACAAAAAAGTTACAACTAAATG
97563396 TTGAAAAAAA
Statistics
Matches: 103, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
43 26 0.25
44 34 0.33
45 6 0.06
46 7 0.07
47 27 0.26
48 3 0.03
ACGTcount: A:0.64, C:0.11, G:0.08, T:0.17
Consensus pattern (46 bp):
ACAAATAAAAACAAAAAAGTTACAACTAAATGACTAAAAGACAAGT
Found at i:97566648 original size:15 final size:15
Alignment explanation
Indices: 97566628--97566656 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
97566618 TAAAATTTTG
97566628 AATTTAATATAATTA
1 AATTTAATATAATTA
97566643 AATTTAATATAATT
1 AATTTAATATAATT
97566657 CTAATTTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AATTTAATATAATTA
Found at i:97572598 original size:30 final size:30
Alignment explanation
Indices: 97572562--97572624 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
97572552 ATTTAACAAG
*
97572562 CAAATGTCTCTAAAATAATAATAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
97572592 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
97572622 CAA
1 CAA
97572625 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:97572679 original size:22 final size:22
Alignment explanation
Indices: 97572654--97572696 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
97572644 TATCCAAACA
97572654 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
97572676 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
97572697 ATAGAGAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:97576365 original size:36 final size:36
Alignment explanation
Indices: 97576318--97576389 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
97576308 GAAAGCTAAA
*
97576318 GCCGACCATCTAGTACCCCCAACCTTAAATTTTTTT
1 GCCGACCATCTAGTACCCCCAACCCTAAATTTTTTT
97576354 GCCGACCATCTAGTACCCCCAACCCTAAATTTTTTT
1 GCCGACCATCTAGTACCCCCAACCCTAAATTTTTTT
97576390 TCTAAAAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.25, C:0.35, G:0.08, T:0.32
Consensus pattern (36 bp):
GCCGACCATCTAGTACCCCCAACCCTAAATTTTTTT
Found at i:97577162 original size:26 final size:26
Alignment explanation
Indices: 97577133--97577183 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
97577123 GCTACATGTT
* *
97577133 TAGATACATTGATCAATATATCTACA
1 TAGAGACATTGATAAATATATCTACA
97577159 TAGAGACATTGATAAATATATCTAC
1 TAGAGACATTGATAAATATATCTAC
97577184 GGACATTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (26 bp):
TAGAGACATTGATAAATATATCTACA
Found at i:97577188 original size:22 final size:24
Alignment explanation
Indices: 97577138--97577190 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
97577128 ATGTTTAGAT
*
97577138 ACATTGATCAATATATCTACATAGAG
1 ACATTGATAAATATATCTAC--AGAG
97577164 ACATTGATAAATATATCTAC-G-G
1 ACATTGATAAATATATCTACAGAG
97577186 ACATT
1 ACATT
97577191 TGAATGCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 6 0.23
23 1 0.04
26 19 0.73
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (24 bp):
ACATTGATAAATATATCTACAGAG
Found at i:97579428 original size:20 final size:20
Alignment explanation
Indices: 97579403--97579445 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
97579393 AGCATATTTA
97579403 AAATACATTGATC-AAATTAT
1 AAATACATT-ATCTAAATTAT
*
97579423 AAATACATTATCTAATTTAT
1 AAATACATTATCTAAATTAT
97579443 AAA
1 AAA
97579446 CAGTTTGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.37
Consensus pattern (20 bp):
AAATACATTATCTAAATTAT
Found at i:97580978 original size:32 final size:32
Alignment explanation
Indices: 97580938--97581005 Score: 86
Period size: 32 Copynumber: 2.1 Consensus size: 32
97580928 ATTTTTATAT
*
97580938 ATTTTAAAAATAATATT-TATATAT-TTATAAAA
1 ATTTTAAAAA-AAT-TTATATAAATATTATAAAA
*
97580970 ATTTTAAAAAAATTTATATAAATATTATGAAA
1 ATTTTAAAAAAATTTATATAAATATTATAAAA
97581002 ATTT
1 ATTT
97581006 GAAGATTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 2 0.06
31 9 0.28
32 21 0.66
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (32 bp):
ATTTTAAAAAAATTTATATAAATATTATAAAA
Found at i:97581002 original size:21 final size:21
Alignment explanation
Indices: 97580960--97581005 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
97580950 ATATTTATAT
*
97580960 ATTTATAAAAATTTTAAAAAA
1 ATTTATAAAAATATTAAAAAA
* **
97580981 ATTTATATAAATATTATGAAA
1 ATTTATAAAAATATTAAAAAA
97581002 ATTT
1 ATTT
97581006 GAAGATTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTTATAAAAATATTAAAAAA
Found at i:97585816 original size:14 final size:14
Alignment explanation
Indices: 97585797--97585829 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
97585787 ACATGTGAAT
97585797 ATATATATATATTC
1 ATATATATATATTC
97585811 ATATATATATATTC
1 ATATATATATATTC
*
97585825 GTATA
1 ATATA
97585830 AGTAGTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.48
Consensus pattern (14 bp):
ATATATATATATTC
Found at i:97585982 original size:22 final size:23
Alignment explanation
Indices: 97585953--97586006 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
97585943 TATTCTCATG
97585953 ATAATATTTATA-TAAATTAAA-A
1 ATAATATTTATATTAAA-TAAATA
*
97585975 GTAATATTTATATTAAATAAATA
1 ATAATATTTATATTAAATAAATA
97585998 ATAATATTT
1 ATAATATTT
97586007 TAAGTGGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 15 0.54
23 13 0.46
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
ATAATATTTATATTAAATAAATA
Found at i:97586467 original size:18 final size:19
Alignment explanation
Indices: 97586446--97586486 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
97586436 AAAAATTATA
* *
97586446 AAAATAATTTTTA-TATTT
1 AAAATAAATTATATTATTT
97586464 AAAATAAATTATATTATTT
1 AAAATAAATTATATTATTT
97586483 AAAA
1 AAAA
97586487 GTATTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AAAATAAATTATATTATTT
Found at i:97588250 original size:5 final size:5
Alignment explanation
Indices: 97588240--97588275 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
97588230 ATAAAAAGAC
97588240 AAAAT AAAAT AAAAT AAAAT AAAAAT AAAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT AAAA
97588276 CATGTTGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 19 0.63
6 11 0.37
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:97588266 original size:6 final size:6
Alignment explanation
Indices: 97588229--97588275 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
97588219 TAGGGTAATT
*
97588229 AATAAA AAGACAA AAT-AA AAT-AA AAT-AA AATAAA AATAAA AATAAA
1 AATAAA AATA-AA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
97588275 A
1 A
97588276 CATGTTGATA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
5 15 0.41
6 18 0.49
7 4 0.11
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:97590361 original size:138 final size:138
Alignment explanation
Indices: 97590103--97590559 Score: 614
Period size: 138 Copynumber: 3.3 Consensus size: 138
97590093 AGGCAAGATG
* * ** * *
97590103 GCTTC-ATCTTGCTCTATTGCAACTTCAAAGAGATAATATTTGTTGTTGTAGCCTCATTCTAACC
1 GCTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTGTTGTAGCTTCATTCTAACC
* ** *
97590167 TACTGCAACTTCAGGGGTATAGGAATTGTAGTTTTAATCTACTCCATTGTAACTTCAGGGAGATG
65 TACTGCAACTTCAGGGGTATAGGAATTGTAGTTTCAATCTACTCCGCTGCAACTTCAGGGAGATG
97590232 AGATTCGTA
130 AGATTCGTA
* * * *
97590241 GCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAGGATTTGTTGTTGTAGCTTCATTCTAA-TT
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTGTTGTAGCTTCATTCTAACCT
* *
97590305 CACTGCAACTTCAGGGGTATAGGAATTATAGTTTCAATCTACTCCGCTGCATCTTCAAGGG-GAT
66 -ACTGCAACTTCAGGGGTATAGGAATTGTAGTTTCAATCTACTCCGCTGCAACTTC-AGGGAGAT
97590369 GAGATTCGTA
129 GAGATTCGTA
* ** * *
97590379 GCTTCAATCTACTCCACTATAACTTCAGGAAGATAAGATTTGTTGTTGTAACTTCATTCTAACCT
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTGTTGTAGCTTCATTCTAACCT
* * * ** *
97590444 ATTGCAACTTTAAGGGTATAGGAATTGTAACTTCAATCTACTTCGCTGCAACTTCAGGGAGATGA
66 ACTGCAACTTCAGGGGTATAGGAATTGTAGTTTCAATCTACTCCGCTGCAACTTCAGGGAGATGA
97590509 GATTCGTA
131 GATTCGTA
*
97590517 GCTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGT
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
97590560 AGCTTTAATC
Statistics
Matches: 278, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
137 5 0.02
138 265 0.95
139 8 0.03
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (138 bp):
GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTGTTGTAGCTTCATTCTAACCT
ACTGCAACTTCAGGGGTATAGGAATTGTAGTTTCAATCTACTCCGCTGCAACTTCAGGGAGATGA
GATTCGTA
Found at i:97590596 original size:44 final size:44
Alignment explanation
Indices: 97590168--97590738 Score: 238
Period size: 44 Copynumber: 12.6 Consensus size: 44
97590158 ATTCTAACCT
* * * * * *
97590168 ACTGCAACTTCAGGG-GTATAGGAATTGTAGTTTTAATCTACTCC
1 ACTGCAACTTTAGGGAG-ATAAGATTTGTAGCTTCAATCTGCTCC
* * * * * *
97590212 ATTGTAACTTCAGGGAGATGAGATTCGTAGCTTTAATCTGCTCC
1 ACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCC
* * * * ** *
97590256 ATTGCAACTTCAGGGAGATAGGATTTGTTGTTGTAGCTTCATTCTAATTC
1 ACTGCAACTTTAGGGAGATA--A---GAT-TTGTAGCTTCAATCTGCTCC
* * * * * *
97590306 ACTGCAACTTCAGGG-GTATAGGAATTATAGTTTCAATCTACTCC
1 ACTGCAACTTTAGGGAG-ATAAGATTTGTAGCTTCAATCTGCTCC
* * * * * *
97590350 GCTGCATCTTCAAGGG-GATGAGATTCGTAGCTTCAATCTACTCC
1 ACTGCAACTT-TAGGGAGATAAGATTTGTAGCTTCAATCTGCTCC
** * * * * *
97590394 ACTATAACTTCAGGAAGATAAGATTTGTTG-TTGTAACTTCATTCTAACC
1 ACTGCAACTTTAGGGAGATAAGATTTGTAGCTT-CAA--TC-TGCT--CC
* * * * * * *
97590443 TATTGCAACTTTAAGGG-TATAGGAATTGTAACTTCAATCTACTTC
1 -ACTGCAACTTT-AGGGAGATAAGATTTGTAGCTTCAATCTGCTCC
* * * * *
97590488 GCTGCAACTTCAGGGAGATGAGATTCGTAGCTTCAATCTGCTCT
1 ACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCC
* * **
97590532 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTATTCC
1 ACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCC
* * *
97590576 ACTGTAACTTTAGGGAGATAAGATTCGCTATGGTAGATTCAATCCG-TCCC
1 ACTGCAACTTTAGGGAGATAAGA-T---T-T-GTAGCTTCAATCTGCT-CC
* * * * * * * *
97590626 ACTACAAATTCAAAGGTG-TAAGATTTGTAGCTTAAATTTACTCC
1 ACTGCAACTT-TAGGGAGATAAGATTTGTAGCTTCAATCTGCTCC
* * * * *
97590670 AGTGCAACTTTAGAGAGATAAGATTTGTAGTTTTAATATGCTCC
1 ACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCC
97590714 ACTGCAACTTTAGGGAGATAAGATT
1 ACTGCAACTTTAGGGAGATAAGATT
97590739 CGTTATGGTA
Statistics
Matches: 389, Mismatches: 108, Indels: 60
0.70 0.19 0.11
Matches are distributed among these distances:
43 12 0.03
44 263 0.68
45 11 0.03
46 4 0.01
47 6 0.02
48 3 0.01
49 8 0.02
50 73 0.19
51 9 0.02
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (44 bp):
ACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCC
Found at i:97590781 original size:138 final size:138
Alignment explanation
Indices: 97590534--97590789 Score: 386
Period size: 138 Copynumber: 1.9 Consensus size: 138
97590524 TCTGCTCTAC
* * * *
97590534 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTATTCCACTGTAACTTTAGGGAGATAAGA
1 TGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATATACTCCACTGCAACTTTAGGGAGATAAGA
97590599 TTCGCTATGGTAGATTCAATCCGTCCCACTACAAATTCAAAGGTGTAAGATTTGTAGCTTAAATT
66 TTCGCTATGGTAGATTCAATCCGTCCCACTACAAATTCAAAGGTGTAAGATTTGTAGCTTAAATT
97590664 TACTCCAG
131 TACTCCAG
* * *
97590672 TGCAACTTTAGAGAGATAAGATTTGTAGTTTTAATATGCTCCACTGCAACTTTAGGGAGATAAGA
1 TGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATATACTCCACTGCAACTTTAGGGAGATAAGA
* ** * * * *
97590737 TTCGTTATGGTAGATTCAATCTTTCCCACTGCAATTTCAGAGGTGTAGGATTT
66 TTCGCTATGGTAGATTCAATCCGTCCCACTACAAATTCAAAGGTGTAAGATTT
97590790 ATGGTTTCAT
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
138 104 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (138 bp):
TGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATATACTCCACTGCAACTTTAGGGAGATAAGA
TTCGCTATGGTAGATTCAATCCGTCCCACTACAAATTCAAAGGTGTAAGATTTGTAGCTTAAATT
TACTCCAG
Found at i:97592129 original size:12 final size:12
Alignment explanation
Indices: 97592112--97592138 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
97592102 CAAATGGTAA
97592112 CTTCTTAATGTT
1 CTTCTTAATGTT
97592124 CTTCTTAATGTT
1 CTTCTTAATGTT
97592136 CTT
1 CTT
97592139 ATTGACAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.19, G:0.07, T:0.59
Consensus pattern (12 bp):
CTTCTTAATGTT
Found at i:97606138 original size:25 final size:24
Alignment explanation
Indices: 97606101--97606151 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
97606091 AGTTCAAGCA
*
97606101 AGCCATATCAGGA-AGCTCACAAAG
1 AGCCATACCAGGACA-CTCACAAAG
*
97606125 AGCCTATACCAGGACACTCATAAAG
1 AGCC-ATACCAGGACACTCACAAAG
97606150 AG
1 AG
97606152 TTGCGTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.17
25 18 0.78
26 1 0.04
ACGTcount: A:0.41, C:0.25, G:0.20, T:0.14
Consensus pattern (24 bp):
AGCCATACCAGGACACTCACAAAG
Found at i:97610761 original size:21 final size:21
Alignment explanation
Indices: 97610735--97610775 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97610725 TTGCTCTGCT
97610735 CTGCCTCCCTCGCTGATGCCG
1 CTGCCTCCCTCGCTGATGCCG
* *
97610756 CTGCCTCCCTCTCTGCTGCC
1 CTGCCTCCCTCGCTGATGCC
97610776 TCCGCTCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.51, G:0.20, T:0.27
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGATGCCG
Found at i:97616206 original size:9 final size:9
Alignment explanation
Indices: 97616192--97616267 Score: 66
Period size: 9 Copynumber: 8.2 Consensus size: 9
97616182 TAAGTATAAT
97616192 TAAGTTATG
1 TAAGTTATG
97616201 TAAGTTATG
1 TAAGTTATG
* *
97616210 ATATGATATATA
1 -TAAG-T-TATG
*
97616222 TATATTTATG
1 TA-AGTTATG
97616232 T-A-TTATG
1 TAAGTTATG
97616239 TAAGTTATG
1 TAAGTTATG
*
97616248 TAAATTATG
1 TAAGTTATG
97616257 TAAGTTATG
1 TAAGTTATG
97616266 TA
1 TA
97616268 TTATGTACGA
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
7 6 0.11
8 2 0.04
9 32 0.59
10 7 0.13
11 4 0.07
12 3 0.06
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:97616414 original size:9 final size:9
Alignment explanation
Indices: 97616400--97616560 Score: 97
Period size: 9 Copynumber: 17.9 Consensus size: 9
97616390 TGTGTTAATT
97616400 TTATGTAAA
1 TTATGTAAA
*
97616409 TTATGTAAG
1 TTATGTAAA
97616418 TTATG-AAA
1 TTATGTAAA
*
97616426 TTTGATCTTTAAA
1 -TT-A--TGTAAA
*
97616439 TTATGTAAG
1 TTATGTAAA
*
97616448 TCATGT--A
1 TTATGTAAA
97616455 TTATGTAAGA
1 TTATGTAA-A
97616465 -TATGT--A
1 TTATGTAAA
*
97616471 TTATGTAAG
1 TTATGTAAA
97616480 TTATGTAAA
1 TTATGTAAA
*
97616489 TTATGTAAG
1 TTATGTAAA
97616498 TTATG-AAA
1 TTATGTAAA
*
97616506 TTCGAACTTTAAA
1 TT---A-TGTAAA
*
97616519 TTATGTAAG
1 TTATGTAAA
97616528 TTATGT--A
1 TTATGTAAA
97616535 TTATGTAAA
1 TTATGTAAA
*
97616544 TTAAGTAAA
1 TTATGTAAA
97616553 TTATGTAA
1 TTATGTAA
97616561 GTTGCTGGTG
Statistics
Matches: 116, Mismatches: 18, Indels: 36
0.68 0.11 0.21
Matches are distributed among these distances:
6 1 0.01
7 16 0.14
8 6 0.05
9 76 0.66
10 3 0.03
11 2 0.02
12 4 0.03
13 8 0.07
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (9 bp):
TTATGTAAA
Found at i:97616459 original size:16 final size:15
Alignment explanation
Indices: 97616438--97616498 Score: 77
Period size: 16 Copynumber: 3.7 Consensus size: 15
97616428 TGATCTTTAA
97616438 ATTATGTAAGTCATGT
1 ATTATGTAAGT-ATGT
97616454 ATTATGTAAGATATGT
1 ATTATGTAAG-TATGT
97616470 ATTATGTAAGTTATGT
1 ATTATGTAAG-TATGT
97616486 AAATTATGTAAGT
1 --ATTATGTAAGT
97616499 TATGAAATTC
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
16 29 0.71
17 2 0.05
18 10 0.24
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.44
Consensus pattern (15 bp):
ATTATGTAAGTATGT
Found at i:97616964 original size:196 final size:196
Alignment explanation
Indices: 97616661--97617122 Score: 788
Period size: 196 Copynumber: 2.4 Consensus size: 196
97616651 AAAGTGAAAT
*
97616661 AAAATAGAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAA
1 AAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAA
97616726 AT-AAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAATATTTAAAATAAAACTTTAAAT
66 ATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAATATTTAAAATAAAACTTTAAAT
*
97616790 ACAATTTAATTTAATTAGGTAATGTT-AAA-AAAATAAAATATTGAAATTATTTTTCGTGATTCA
131 ACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTCA
97616853 A
196 A
*
97616854 ATTAAATGAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATA
1 A--AAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATA
**
97616919 AAATAAAATATTGAAATTATTTTTCGTGATTCAAATTAAATGAAATATTTAAAATAAAACTTTAA
64 AAATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAATATTTAAAATAAAACTTTAA
*
97616984 ATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATCAAATATTAAAATTATTTTTCGTGATT
129 ATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATT
97617049 CAA
194 CAA
* **
97617052 AAAATAAAATATTTAAAATGAAACTTTAAATGTAATTTAATTTAATTAGGTAAT-TTGAAAATAA
1 AAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTT-AAAATAA
97617116 AATAAAA
65 AATAAAA
97617123 GATAAAAAAA
Statistics
Matches: 253, Mismatches: 10, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
193 1 0.00
195 66 0.26
196 149 0.59
197 3 0.01
198 34 0.13
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (196 bp):
AAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAA
ATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAATATTTAAAATAAAACTTTAAAT
ACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTCA
A
Found at i:97616977 original size:99 final size:99
Alignment explanation
Indices: 97616668--97617122 Score: 787
Period size: 97 Copynumber: 4.6 Consensus size: 99
97616658 AATAAAATAG
97616668 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAAT-AAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
**
97616732 ATTGAAATTATTTTTCGTGATTCAAAAAAAATGA
66 ATTGAAATTATTTTTCGTGATTCAAATTAAATGA
97616766 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTT-AAA-AAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
97616829 ATTGAAATTATTTTTCGTGATTCAAATTAAATGA
66 ATTGAAATTATTTTTCGTGATTCAAATTAAATGA
97616863 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
97616928 ATTGAAATTATTTTTCGTGATTCAAATTAAATGA
66 ATTGAAATTATTTTTCGTGATTCAAATTAAATGA
*
97616962 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATCAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
* *
97617027 ATTAAAATTATTTTTCGTGATTCAAA--AAATAA
66 ATTGAAATTATTTTTCGTGATTCAAATTAAATGA
* **
97617059 AATATTTAAAATGAAACTTTAAATGTAATTTAATTTAATTAGGTAAT-TTGAAAATAAAATAAAA
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTT-AAAATAAAATAAAA
97617123 GATAAAAAAA
Statistics
Matches: 344, Mismatches: 9, Indels: 9
0.95 0.02 0.02
Matches are distributed among these distances:
96 7 0.02
97 151 0.44
98 53 0.15
99 133 0.39
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (99 bp):
AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
ATTGAAATTATTTTTCGTGATTCAAATTAAATGA
Found at i:97620114 original size:12 final size:12
Alignment explanation
Indices: 97620097--97620122 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97620087 CAAGTTAAAT
97620097 TAAGTCACCAAA
1 TAAGTCACCAAA
97620109 TAAGTCACCAAA
1 TAAGTCACCAAA
97620121 TA
1 TA
97620123 TGCAAATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.23, G:0.08, T:0.19
Consensus pattern (12 bp):
TAAGTCACCAAA
Found at i:97621920 original size:82 final size:82
Alignment explanation
Indices: 97621833--97622022 Score: 242
Period size: 80 Copynumber: 2.3 Consensus size: 82
97621823 ACTTTTTTGC
*
97621833 TTTTTGTGGCGTTTTTCAAAAAACGCCGATACTCCCCTAAATATCCAATTAAAACGACACCATTT
1 TTTTTGCGGCGTTTTTCAAAAAACGCCGATACTCCCCTAAATATCCAATTAAAACGACACCATTT
97621898 TCATTAAACTGCTATAT
66 TCATTAAACTGCTATAT
* *****
97621915 TTTTTGCGGCGTTTTTTC-AAAAA--CCGCTACTCCCCTAAATATCCAATTAAAACGATGTTGTT
1 TTTTTGCGGCG-TTTTTCAAAAAACGCCGATACTCCCCTAAATATCCAATTAAAACGACACCATT
* *
97621977 TTCGTTAAACTGCTATGT
65 TTCATTAAACTGCTATAT
* *
97621995 TTTTTGCGGTGTTTTTTAAATAAACGCC
1 TTTTTGCGGCGTTTTTCAAA-AAACGCC
97622023 ACTAATCTCT
Statistics
Matches: 92, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
79 5 0.05
80 61 0.66
81 3 0.03
82 15 0.16
83 8 0.09
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (82 bp):
TTTTTGCGGCGTTTTTCAAAAAACGCCGATACTCCCCTAAATATCCAATTAAAACGACACCATTT
TCATTAAACTGCTATAT
Found at i:97622395 original size:28 final size:27
Alignment explanation
Indices: 97622371--97622423 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
97622361 CCCATAAACA
97622371 CTAAA-CTCTAAGCCCTAAATTATAAAGC
1 CTAAATCTCTAA-CCCTAAA-TATAAAGC
*
97622399 CTAAATCTTTAACCCTAAATATAAA
1 CTAAATCTCTAACCCTAAATATAAA
97622424 ATGATATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 6 0.26
28 12 0.52
29 5 0.22
ACGTcount: A:0.45, C:0.23, G:0.04, T:0.28
Consensus pattern (27 bp):
CTAAATCTCTAACCCTAAATATAAAGC
Found at i:97623086 original size:40 final size:40
Alignment explanation
Indices: 97623030--97623114 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
97623020 TTTTAAGGTG
* * * * *
97623030 ATCTTTAGCGGTGTTTTTTAGAAAGCGCCGCTAATGTTCT
1 ATCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAAAGATCT
97623070 ATCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAAAGATCT
1 ATCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAAAGATCT
97623110 ATCTT
1 ATCTT
97623115 CTAAACAAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (40 bp):
ATCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAAAGATCT
Found at i:97623361 original size:41 final size:41
Alignment explanation
Indices: 97623303--97623393 Score: 103
Period size: 41 Copynumber: 2.2 Consensus size: 41
97623293 GCATTTTCTA
* *
97623303 ATAAGCGCCGCTAATTCTCGATCTATTGCGGCGTTTGTT-TC
1 ATAAACGCCGCTAATTCTCGACCTATTGCGGCGTTT-TTGTC
* * * *
97623344 ATAAACGCCGCTGATTCTTGACCTTTTGTGGCGTTTTTGTC
1 ATAAACGCCGCTAATTCTCGACCTATTGCGGCGTTTTTGTC
*
97623385 ACAAACGCC
1 ATAAACGCC
97623394 ACTATAACTC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 2 0.05
41 40 0.95
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (41 bp):
ATAAACGCCGCTAATTCTCGACCTATTGCGGCGTTTTTGTC
Found at i:97625832 original size:17 final size:19
Alignment explanation
Indices: 97625806--97625840 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
97625796 TTCATTCTCT
97625806 TTTTTCAATTTT-ACTTTA
1 TTTTTCAATTTTAACTTTA
97625824 TTTTT-AATTTTAACTTT
1 TTTTTCAATTTTAACTTT
97625841 TAAAAGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTCAATTTTAACTTTA
Found at i:97626984 original size:14 final size:14
Alignment explanation
Indices: 97626965--97626993 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
97626955 CCACCAAATA
97626965 GTATGTCACATTAT
1 GTATGTCACATTAT
97626979 GTATGTCACATTAT
1 GTATGTCACATTAT
97626993 G
1 G
97626994 ACATCAGGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (14 bp):
GTATGTCACATTAT
Found at i:97627686 original size:116 final size:116
Alignment explanation
Indices: 97627482--97627710 Score: 422
Period size: 116 Copynumber: 2.0 Consensus size: 116
97627472 GTGCTAGGCC
*
97627482 GTGTAACTCATTGACTTGAAACACTAAGAAACTCTCAAATGACACATGGTTGTGTGCACCAAATT
1 GTGTAACTCACTGACTTGAAACACTAAGAAACTCTCAAATGACACATGGTTGTGTGCACCAAATT
*
97627547 TGACCCAAAAACTATGCCATTTTAAAACCAAACCATACCTATTCACCCGCT
66 TGACCCAAAAACCATGCCATTTTAAAACCAAACCATACCTATTCACCCGCT
* *
97627598 GTGTAACTCACTGGCTTGAAACACTAAGAAACTCTCAAATGACATATGGTTGTGTGCACCAAATT
1 GTGTAACTCACTGACTTGAAACACTAAGAAACTCTCAAATGACACATGGTTGTGTGCACCAAATT
97627663 TGACCCAAAAACCATGCCATTTTAAAACCAAACCATACCTATTCACCC
66 TGACCCAAAAACCATGCCATTTTAAAACCAAACCATACCTATTCACCC
97627711 ACTCTAATTA
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 109 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.25
Consensus pattern (116 bp):
GTGTAACTCACTGACTTGAAACACTAAGAAACTCTCAAATGACACATGGTTGTGTGCACCAAATT
TGACCCAAAAACCATGCCATTTTAAAACCAAACCATACCTATTCACCCGCT
Found at i:97634215 original size:37 final size:37
Alignment explanation
Indices: 97634174--97634247 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
97634164 GAGCTTACTA
97634174 AGCTATAAAACTTACTTTGTTTAATTTTATCGTGTTT
1 AGCTATAAAACTTACTTTGTTTAATTTTATCGTGTTT
97634211 AGCTATAAAACTTACTTTGTTTAATTTTATCGTGTTT
1 AGCTATAAAACTTACTTTGTTTAATTTTATCGTGTTT
97634248 TATAGTGAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.51
Consensus pattern (37 bp):
AGCTATAAAACTTACTTTGTTTAATTTTATCGTGTTT
Found at i:97637213 original size:28 final size:28
Alignment explanation
Indices: 97637168--97637223 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
97637158 TCTATGTCAG
*
97637168 CTCAGAAATGTGCGAGAAAAGGTTGTGA
1 CTCAGAAATGTGCAAGAAAAGGTTGTGA
*
97637196 CTCAGAAATGTGTAAGAAAAGGTTGTGA
1 CTCAGAAATGTGCAAGAAAAGGTTGTGA
97637224 ACCTTATCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.38, C:0.09, G:0.30, T:0.23
Consensus pattern (28 bp):
CTCAGAAATGTGCAAGAAAAGGTTGTGA
Found at i:97640417 original size:16 final size:16
Alignment explanation
Indices: 97640396--97640427 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
97640386 TATTAATAAA
*
97640396 GGTTAATTAGTAAATT
1 GGTTAATAAGTAAATT
97640412 GGTTAATAAGTAAATT
1 GGTTAATAAGTAAATT
97640428 AAAACAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (16 bp):
GGTTAATAAGTAAATT
Found at i:97651011 original size:18 final size:17
Alignment explanation
Indices: 97650983--97651017 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
97650973 TTTAATTTTT
97650983 TAAAAATTAAAAAGATA
1 TAAAAATTAAAAAGATA
*
97651000 TAAAATATTAAAATGATA
1 TAAAA-ATTAAAAAGATA
97651018 ACATTATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
TAAAAATTAAAAAGATA
Found at i:97651225 original size:30 final size:30
Alignment explanation
Indices: 97651171--97651235 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
97651161 TAGTAATGGT
*
97651171 AAAATTTTACTTTAATCCTCTAAAAATAATA
1 AAAATTTGACTTTAATCCTCT-AAAATAATA
* * *
97651202 AAAATTTGA-TTTAATCTTTTAAAATTATA
1 AAAATTTGACTTTAATCCTCTAAAATAATA
97651231 AAAAT
1 AAAAT
97651236 ATAACTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 13 0.43
30 9 0.30
31 8 0.27
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.42
Consensus pattern (30 bp):
AAAATTTGACTTTAATCCTCTAAAATAATA
Found at i:97651332 original size:16 final size:16
Alignment explanation
Indices: 97651294--97651325 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
97651284 CTTCATTACA
97651294 AAAATTATCTGACTTC
1 AAAATTATCTGACTTC
97651310 AAAATTATCTGACTTC
1 AAAATTATCTGACTTC
97651326 GCCATTACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (16 bp):
AAAATTATCTGACTTC
Found at i:97653581 original size:20 final size:22
Alignment explanation
Indices: 97653539--97653581 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
97653529 CTTGGAAAAT
*
97653539 TTATTGTGTTGAATAGTAGTGG
1 TTATTGTGTTGAATAATAGTGG
*
97653561 TTATTGT-TTTAATAATA-TGG
1 TTATTGTGTTGAATAATAGTGG
97653581 T
1 T
97653582 ATGATGGTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 8 0.42
22 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (22 bp):
TTATTGTGTTGAATAATAGTGG
Found at i:97654640 original size:32 final size:33
Alignment explanation
Indices: 97654599--97654663 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
97654589 AAAGTAGCTG
97654599 GTGTACTTAGTA-TTTGAAAATAATTATGTTAC
1 GTGTACTTAGTATTTTGAAAATAATTATGTTAC
97654631 GTGTACTTAGTATTTTGAAAATAATTATGTTAC
1 GTGTACTTAGTATTTTGAAAATAATTATGTTAC
97654664 TCCAACTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.34, C:0.06, G:0.15, T:0.45
Consensus pattern (33 bp):
GTGTACTTAGTATTTTGAAAATAATTATGTTAC
Found at i:97658358 original size:10 final size:10
Alignment explanation
Indices: 97658332--97658361 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
97658322 GTTAATTTCA
*
97658332 ATTTTTAAAT
1 ATTTTTTAAT
97658342 ATTTTTTAAT
1 ATTTTTTAAT
97658352 ATTTTTTAAT
1 ATTTTTTAAT
97658362 TTATGTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
ATTTTTTAAT
Found at i:97658398 original size:25 final size:25
Alignment explanation
Indices: 97658344--97658404 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
97658334 TTTTAAATAT
*
97658344 TTTTTAATATTTTTTAATTTATGTAA
1 TTTTTAATAATTTTTAATTTATG-AA
*
97658370 -TTTTAATTAATTTTTATTTTAT-AA
1 TTTTTAA-TAATTTTTAATTTATGAA
*
97658394 TTTTTTATAAT
1 TTTTTAATAAT
97658405 AATATGTAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 6 0.20
25 11 0.37
26 13 0.43
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTTTAATAATTTTTAATTTATGAA
Found at i:97659952 original size:18 final size:18
Alignment explanation
Indices: 97659929--97659966 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
97659919 TGCTAGGTTC
*
97659929 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
97659947 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
97659965 GT
1 GT
97659967 TTCATTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:97664532 original size:18 final size:18
Alignment explanation
Indices: 97664506--97664544 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
97664496 TACAAAAATC
*
97664506 TAAATTTATTTCTCAAT-T
1 TAAACTTATTTC-CAATAT
97664524 TAAACTTATTTCCAATAT
1 TAAACTTATTTCCAATAT
97664542 TAA
1 TAA
97664545 TTAATTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAACTTATTTCCAATAT
Found at i:97669960 original size:13 final size:13
Alignment explanation
Indices: 97669942--97669968 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
97669932 TCTAGAAAAT
97669942 TTTTCAAGGTCAA
1 TTTTCAAGGTCAA
97669955 TTTTCAAGGTCAA
1 TTTTCAAGGTCAA
97669968 T
1 T
97669969 AGACAACGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTTTCAAGGTCAA
Found at i:97671955 original size:92 final size:92
Alignment explanation
Indices: 97671798--97671985 Score: 376
Period size: 92 Copynumber: 2.0 Consensus size: 92
97671788 TATGTTAAAT
97671798 ATTCGCGATGCTGTGATTGGCTATTTTGATGCTATTGGTTGGAATTCATTTGCAAATATTTCCTG
1 ATTCGCGATGCTGTGATTGGCTATTTTGATGCTATTGGTTGGAATTCATTTGCAAATATTTCCTG
97671863 TAATGCATATTATGAGTTGATTTATGA
66 TAATGCATATTATGAGTTGATTTATGA
97671890 ATTCGCGATGCTGTGATTGGCTATTTTGATGCTATTGGTTGGAATTCATTTGCAAATATTTCCTG
1 ATTCGCGATGCTGTGATTGGCTATTTTGATGCTATTGGTTGGAATTCATTTGCAAATATTTCCTG
97671955 TAATGCATATTATGAGTTGATTTATGA
66 TAATGCATATTATGAGTTGATTTATGA
97671982 ATTC
1 ATTC
97671986 TACACCACAT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 96 1.00
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (92 bp):
ATTCGCGATGCTGTGATTGGCTATTTTGATGCTATTGGTTGGAATTCATTTGCAAATATTTCCTG
TAATGCATATTATGAGTTGATTTATGA
Found at i:97673190 original size:4 final size:4
Alignment explanation
Indices: 97673183--97673216 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
97673173 TTGCTTGTAC
*
97673183 ATAA ATAA ATAA ATAAA ATGA ATAA ATAA ATAA A
1 ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA A
97673217 GGCTCAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:97673995 original size:6 final size:7
Alignment explanation
Indices: 97673977--97674001 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
97673967 AGAAAAAATC
97673977 ATTTTTT
1 ATTTTTT
97673984 ATTTTTT
1 ATTTTTT
97673991 ATTTTTT
1 ATTTTTT
97673998 ATTT
1 ATTT
97674002 AATTTTATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
ATTTTTT
Found at i:97675522 original size:125 final size:126
Alignment explanation
Indices: 97675274--97675915 Score: 825
Period size: 125 Copynumber: 5.1 Consensus size: 126
97675264 AAGGCCAAGC
* *
97675274 AGGAACTACTGTAGAAAAAGAGCATCCACGTGTGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
1 AGGAACTATTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * *
97675339 TCCTGCTTGAAGTGTTTTTGACACTATTTTTTCAAAACTGTCTTCTCAAAATTA-TTTTTT
66 TCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTT
* * * * * *
97675399 AGGAACTAGTGTAGAAAAAAAGCGTCCACATGGGAGCTTTTTTTAGTAATTTTGCTGATAGTGCA
1 AGGAACTATTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * * * **
97675464 TCCTACTTGAAGCGTTTTTTATATTA-TTTTTCAGAACTATCTTCTCAAAATTATTTTTTT
66 TCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTT
* * * * *
97675524 AAGAACTACTATAGAAAAAGAGCATCCAC-TAGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCA
1 AGGAACTATTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * * *
97675588 TCTTGCTTGAAGCATTTCTT-ATACTATTTTTTCATAACCGTCTTCTCAAAATTATTTTTTT
66 TCCTGCTTGAAGCGTTT-TTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTT
* * * * *
97675649 AAGAACTATTGTAGAAAAAGAGCGTCCACGTGAGAGC-TTTTTCAGTAATTTTGTTGATAGTGCA
1 AGGAACTATTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * *
97675713 T-CTGCTTGAAGCGTTTTTGACACTATTTTTTTAGAACCGTCTTCTCCAAATTATTTTTTC
66 TCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTT
* *
97675773 AGGAACTATTGTA-AAAAAGAGCATTCACGTGTGG-GCTTTTTTCAGTAATTTTACTGACAGTGC
1 AGGAACTATTGTAGAAAAAGAGCATCCACGTG-GGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * *
97675836 ATCCTGCTTGAAGCGTTTTTGACATTATCTTTTCCGAACCGTCTTCTCAAAATTAATTTTTCT
65 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATT-ATTTTTTT
*
97675899 -GAAACTATTGTAGAAAA
1 AGGAACTATTGTAGAAAA
97675916 TAAACAAAAT
Statistics
Matches: 447, Mismatches: 60, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
123 20 0.04
124 162 0.36
125 250 0.56
126 15 0.03
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (126 bp):
AGGAACTATTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
TCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTT
Found at i:97675586 original size:249 final size:249
Alignment explanation
Indices: 97675276--97675915 Score: 869
Period size: 249 Copynumber: 2.6 Consensus size: 249
97675266 GGCCAAGCAG
97675276 GAACTACTGTAGAAAAAGAGCATCCACGTGTGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGTGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* *
97675341 CTGCTTGAAGTGTTTTTGACACTATTTTTTCAAAACTGTCTTCTCAAAATTATTTTTTAGGAACT
66 CTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTAGGAACT
* * *
97675406 AGTGTAGAAAAAAAGCGTCCACATGGGAGCTTTTTTTAGTAATTTTGCTGATAGTGCATCCTACT
131 ATTGTAGAAAAAAAGCGTCCACATGAGAGC-TTTTTCAGTAATTTTGCTGATAGTGCAT-CTACT
* * * * *
97675471 TGAAGCGTTTTTTATATTA-TTTTTCAGAACTATCTTCTCAAAATTATTTTTTTAA
194 TGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAA
* *
97675526 GAACTACTATAGAAAAAGAGCATCCAC-TAG-GAGCTTTTTTCAGTAATTTTGCTAACAGTGCAT
1 GAACTACTGTAGAAAAAGAGCATCCACGT-GTGAGCTTTTTTCAGTAATTTTGCTGACAGTGCAT
* * * * *
97675589 CTTGCTTGAAGCATTTCTT-ATACTATTTTTTCATAACCGTCTTCTCAAAATTATTTTTTTAAGA
65 CCTGCTTGAAGCGTTT-TTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTA-TTTTTTAGGA
* * * *
97675653 ACTATTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTCAGTAATTTTGTTGATAGTGCATCTGC
128 ACTATTGTAGAAAAAAAGCGTCCACATGAGAGCTTTTTCAGTAATTTTGCTGATAGTGCATCTAC
* * * *
97675718 TTGAAGCGTTTTTGACACTATTTTTTTAGAACCGTCTTCTCCAAATTATTTTTTCAG
193 TTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAA
* * * *
97675775 GAACTATTGTA-AAAAAGAGCATTCACGTGTGGGCTTTTTTCAGTAATTTTACTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGTGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * ** *
97675839 CTGCTTGAAGCGTTTTTGACATTATCTTTTCCGAACCGTCTTCTCAAAATTAATTTTTCT-GAAA
66 CTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATT-ATTTTT-TAGGAA
97675903 CTATTGTAGAAAA
129 CTATTGTAGAAAA
97675916 TAAACAAAAT
Statistics
Matches: 341, Mismatches: 40, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
248 37 0.11
249 235 0.69
250 69 0.20
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (249 bp):
GAACTACTGTAGAAAAAGAGCATCCACGTGTGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
CTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTAGGAACT
ATTGTAGAAAAAAAGCGTCCACATGAGAGCTTTTTCAGTAATTTTGCTGATAGTGCATCTACTTG
AAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAA
Found at i:97676047 original size:34 final size:32
Alignment explanation
Indices: 97676009--97676130 Score: 127
Period size: 34 Copynumber: 3.7 Consensus size: 32
97675999 TTTTTTTTAA
*
97676009 AAAAAACATAAACCCTAATTTAATTAATTTTCTT
1 AAAAAACCTAAACCCTAATTTAATT-ATTTT-TT
*
97676043 AAAAATCCTAAACCCTAATTTAATTTATTTATTT
1 AAAAAACCTAAACCCTAATTTAA-TTATTT-TTT
* ** * **
97676077 TAAACCCCTAAAACCTAATTTAATTATTTTAA
1 AAAAAACCTAAACCCTAATTTAATTATTTTTT
97676109 AAAAAACTCTAAACCCTAATTT
1 AAAAAAC-CTAAACCCTAATTT
97676131 TTTTTAAAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
32 5 0.07
33 19 0.26
34 46 0.63
35 3 0.04
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (32 bp):
AAAAAACCTAAACCCTAATTTAATTATTTTTT
Found at i:97676139 original size:28 final size:28
Alignment explanation
Indices: 97676097--97676155 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
97676087 AAACCTAATT
97676097 TAATTATTTTAAAAAAAACTC-TAAACCC
1 TAATTATTTT-AAAAAAACTCTTAAACCC
* * *
97676125 TAATTTTTTTTAAAAAATTCTTAAACCC
1 TAATTATTTTAAAAAAACTCTTAAACCC
97676153 TAA
1 TAA
97676156 ATACATAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.39
Consensus pattern (28 bp):
TAATTATTTTAAAAAAACTCTTAAACCC
Found at i:97680302 original size:14 final size:14
Alignment explanation
Indices: 97680283--97680310 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97680273 ATTTTGACTA
97680283 TAGTTTTCAAACAC
1 TAGTTTTCAAACAC
97680297 TAGTTTTCAAACAC
1 TAGTTTTCAAACAC
97680311 CATGGCAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
TAGTTTTCAAACAC
Found at i:97688523 original size:6 final size:6
Alignment explanation
Indices: 97688489--97688521 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
97688479 GGAAACAATC
97688489 TTTCTTT TTTCTT TTTCTT TTTCTT TTT-TT TTT
1 TTTC-TT TTTCTT TTTCTT TTTCTT TTTCTT TTT
97688522 TTGGGGGGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 17 0.65
7 4 0.15
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (6 bp):
TTTCTT
Found at i:97693750 original size:17 final size:18
Alignment explanation
Indices: 97693712--97693756 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
97693702 CCCAGAATCT
97693712 CACACGCCCGTGTAGACC
1 CACACGCCCGTGTAGACC
*
97693730 CACACGTCCGTGTAG-CC
1 CACACGCCCGTGTAGACC
97693747 CACACAGCCC
1 CACAC-GCCC
97693757 AAATCAGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.22, C:0.47, G:0.20, T:0.11
Consensus pattern (18 bp):
CACACGCCCGTGTAGACC
Found at i:97703291 original size:22 final size:23
Alignment explanation
Indices: 97703266--97703311 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
97703256 CAACCAAATC
97703266 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
97703288 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
97703311 A
1 A
97703312 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:97703317 original size:23 final size:23
Alignment explanation
Indices: 97703273--97703317 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
97703263 ATCAATTCAA
*
97703273 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
97703296 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
97703318 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Done.