Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 299 of 343
Found at i:97979613 original size:13 final size:13
Alignment explanation
Indices: 97979597--97979644 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
97979587 AATTGTTTCT
97979597 TAAAATTGTTATG
1 TAAAATTGTTATG
*
97979610 TAAAATT-TCTATTT
1 TAAAATTGT-TA-TG
97979624 TAAAATTTGTTATG
1 TAAAA-TTGTTATG
97979638 TAAAATT
1 TAAAATT
97979645 TCTATTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 1 0.03
13 11 0.38
14 12 0.41
15 4 0.14
16 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.50
Consensus pattern (13 bp):
TAAAATTGTTATG
Found at i:97979629 original size:14 final size:14
Alignment explanation
Indices: 97979610--97979659 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
97979600 AATTGTTATG
97979610 TAAAATTTCTATTT
1 TAAAATTTCTATTT
* *
97979624 TAAAATTTGT-TATG
1 TAAAATTTCTAT-TT
97979638 TAAAATTTCTATTT
1 TAAAATTTCTATTT
97979652 TAAAATTT
1 TAAAATTT
97979660 TCTTTATGCA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 1 0.03
14 28 0.93
15 1 0.03
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (14 bp):
TAAAATTTCTATTT
Found at i:97979637 original size:28 final size:28
Alignment explanation
Indices: 97979596--97979659 Score: 121
Period size: 28 Copynumber: 2.3 Consensus size: 28
97979586 TAATTGTTTC
97979596 TTAAAA-TTGTTATGTAAAATTTCTATT
1 TTAAAATTTGTTATGTAAAATTTCTATT
97979623 TTAAAATTTGTTATGTAAAATTTCTATT
1 TTAAAATTTGTTATGTAAAATTTCTATT
97979651 TTAAAATTT
1 TTAAAATTT
97979660 TCTTTATGCA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 6 0.17
28 30 0.83
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (28 bp):
TTAAAATTTGTTATGTAAAATTTCTATT
Found at i:97981503 original size:127 final size:127
Alignment explanation
Indices: 97981355--97981615 Score: 450
Period size: 127 Copynumber: 2.1 Consensus size: 127
97981345 GTCGACTTTA
* * *
97981355 TAAAACAAAGGCGATGTTTGATGTTTAAAAATTCGAGGGATCGTGCCCTAACGTGCTGGGTTTCG
1 TAAAACAAAGGCGATGATTGATGTTCAAAAATTCGAGGGATCGTCCCCTAACGTGCTGGGTTTCG
* *
97981420 ATCTTTCGTTTGTCTAAATAATTAAATTTCCCTTTAAAATTTCGTCCACATTTTCTAAACTT
66 ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCAAATTTTCTAAACTT
* *
97981482 TAAAATAAAGGCGATGATTGATGTTCAGAAATTCGAGGGATCGTCCCCTAACGTGCTGGGTTTCG
1 TAAAACAAAGGCGATGATTGATGTTCAAAAATTCGAGGGATCGTCCCCTAACGTGCTGGGTTTCG
*
97981547 ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCAAATTTTCTAAATTT
66 ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCAAATTTTCTAAACTT
97981609 TAAAACA
1 TAAAACA
97981616 TTTAAAATTT
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
127 125 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (127 bp):
TAAAACAAAGGCGATGATTGATGTTCAAAAATTCGAGGGATCGTCCCCTAACGTGCTGGGTTTCG
ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCAAATTTTCTAAACTT
Found at i:97981622 original size:37 final size:37
Alignment explanation
Indices: 97981579--97981652 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
97981569 CAAATTTCCC
97981579 TTTAAAATTTCGTCCAAATTTTCTAAATTTTAAAACA
1 TTTAAAATTTCGTCCAAATTTTCTAAATTTTAAAACA
97981616 TTTAAAATTTCGTCCAAATTTTCTAAATTTTAAAACA
1 TTTAAAATTTCGTCCAAATTTTCTAAATTTTAAAACA
97981653 AAGGCAATGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.14, G:0.03, T:0.43
Consensus pattern (37 bp):
TTTAAAATTTCGTCCAAATTTTCTAAATTTTAAAACA
Found at i:97981732 original size:164 final size:164
Alignment explanation
Indices: 97981452--97981756 Score: 443
Period size: 164 Copynumber: 1.9 Consensus size: 164
97981442 TAAATTTCCC
* * * *
97981452 TTTAAAATTTCGTCCACATTTTCTAAACTTTAAAATAAAGGCGATGATTGATGTTCAGAAATTCG
1 TTTAAAATTTCGTCCAAATTTTCTAAACTTTAAAACAAAGGCAATGATTGATGTTCAGAAATACG
* * * * *
97981517 AGGGATCGTCCCCTAACGTGCTGGGTTTCGATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTT
66 AGGAATCGTCCCCTAACGTGCTGGGTTTCGATCTTTCATTTATCCAAATAATCAAATATCCCTTT
97981582 AAAATTTCGTCCAAATTTTCTAAATTTTAAAACA
131 AAAATTTCGTCCAAATTTTCTAAATTTTAAAACA
* ** *
97981616 TTTAAAATTTCGTCCAAATTTTCTAAATTTTAAAACAAAGGCAATGATTGATGTTTGGGAATACG
1 TTTAAAATTTCGTCCAAATTTTCTAAACTTTAAAACAAAGGCAATGATTGATGTTCAGAAATACG
* *
97981681 -GGAAATCGTGCCCTAACGTGCTGGGTTTTGAT-TTTCTATTTATCCAAATAATCAAATATCCCT
66 AGG-AATCGTCCCCTAACGTGCTGGGTTTCGATCTTTC-ATTTATCCAAATAATCAAATATCCCT
97981744 TTAAAATTTCGTC
129 TTAAAATTTCGTC
97981757 TACTTTTTCT
Statistics
Matches: 124, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
163 6 0.05
164 118 0.95
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (164 bp):
TTTAAAATTTCGTCCAAATTTTCTAAACTTTAAAACAAAGGCAATGATTGATGTTCAGAAATACG
AGGAATCGTCCCCTAACGTGCTGGGTTTCGATCTTTCATTTATCCAAATAATCAAATATCCCTTT
AAAATTTCGTCCAAATTTTCTAAATTTTAAAACA
Found at i:97982579 original size:52 final size:52
Alignment explanation
Indices: 97982518--97982622 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 52
97982508 TTAACACCCC
*
97982518 AAAACTATAAACACCACACTTCTCATCTGCTTTCATTATATAATCCAACTCT
1 AAAACTATAAACACCACACTTCTCATCTACTTTCATTATATAATCCAACTCT
* *
97982570 AAAACTATAAACATCACACTTCTTATCTACTTTCATTATATAATCCAACTCT
1 AAAACTATAAACACCACACTTCTCATCTACTTTCATTATATAATCCAACTCT
97982622 A
1 A
97982623 CACGAAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.38, C:0.27, G:0.01, T:0.34
Consensus pattern (52 bp):
AAAACTATAAACACCACACTTCTCATCTACTTTCATTATATAATCCAACTCT
Found at i:97983117 original size:29 final size:29
Alignment explanation
Indices: 97983050--97983110 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
97983040 GTTCAAACGG
* *
97983050 TTAACCGAACCGATCTAATATTAACCAAA
1 TTAACCGAACCGAACTAATATTAACAAAA
*
97983079 TTAACCGAACCGAACTAGTATTAACAAAA
1 TTAACCGAACCGAACTAATATTAACAAAA
97983108 TTA
1 TTA
97983111 GCTGAACTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.46, C:0.21, G:0.08, T:0.25
Consensus pattern (29 bp):
TTAACCGAACCGAACTAATATTAACAAAA
Found at i:97997928 original size:20 final size:20
Alignment explanation
Indices: 97997890--97997937 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
97997880 TAAATTCTAA
* **
97997890 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
97997910 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
97997930 AAA-ATAAA
1 AAAGATAAA
97997938 ATCCTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:97999819 original size:6 final size:6
Alignment explanation
Indices: 97999803--97999865 Score: 76
Period size: 6 Copynumber: 10.7 Consensus size: 6
97999793 ATATTTAACT
** *
97999803 AAAAT- AAAATA AAAATA AATAATA AAAGGA AAAA-A TAAATA AAAATA
1 AAAATA AAAATA AAAATA AA-AATA AAAATA AAAATA AAAATA AAAATA
97999850 AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAA
97999866 GAAAGATTGG
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
5 9 0.18
6 35 0.70
7 6 0.12
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:98006284 original size:20 final size:20
Alignment explanation
Indices: 98006246--98006293 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
98006236 TAAATTCTAA
* **
98006246 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
98006266 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
98006286 AAA-ATAAA
1 AAAGATAAA
98006294 ATCCTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:98007614 original size:28 final size:29
Alignment explanation
Indices: 98007573--98007635 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 29
98007563 CCATTTTCCC
98007573 CATTCCAAATCATCTTCGAATC-AAAACTT
1 CATT-CAAATCATCTTCGAATCGAAAACTT
*
98007602 CATTCAAATCATCTTCGAATCGAAACCTT
1 CATTCAAATCATCTTCGAATCGAAAACTT
98007631 CATTC
1 CATTC
98007636 TTGCTATCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 17 0.53
29 15 0.47
ACGTcount: A:0.35, C:0.29, G:0.05, T:0.32
Consensus pattern (29 bp):
CATTCAAATCATCTTCGAATCGAAAACTT
Found at i:98008163 original size:31 final size:31
Alignment explanation
Indices: 98008122--98008186 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
98008112 CATAATAAAA
* *
98008122 CATCAGTAATAAATTGGTGCAAAACAAATAG
1 CATCAATAATAAATTGGTGAAAAACAAATAG
*
98008153 CATCAATAATAAATTGGTGAAAAATAAATAG
1 CATCAATAATAAATTGGTGAAAAACAAATAG
98008184 CAT
1 CAT
98008187 TATTTATCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.51, C:0.11, G:0.14, T:0.25
Consensus pattern (31 bp):
CATCAATAATAAATTGGTGAAAAACAAATAG
Found at i:98009615 original size:57 final size:57
Alignment explanation
Indices: 98009516--98009634 Score: 157
Period size: 57 Copynumber: 2.1 Consensus size: 57
98009506 CACCACTCTT
** *
98009516 ACCACTTTGACTGCCAGTAACCTCAATACCCTCCCTACCTAAACCTTCAACACCCTC
1 ACCACTTTGACTGCCAACAACCTCAACACCCTCCCTACCTAAACCTTCAACACCCTC
* * * * * *
98009573 ACCATTTTTACTGCCAACAACCTCAACACCCTCCTTATCTAAACCTTTAACACCTTC
1 ACCACTTTGACTGCCAACAACCTCAACACCCTCCCTACCTAAACCTTCAACACCCTC
98009630 ACCAC
1 ACCAC
98009635 CCTCACCACC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.29, C:0.42, G:0.03, T:0.25
Consensus pattern (57 bp):
ACCACTTTGACTGCCAACAACCTCAACACCCTCCCTACCTAAACCTTCAACACCCTC
Found at i:98011910 original size:14 final size:14
Alignment explanation
Indices: 98011877--98011913 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
98011867 ACCCCAAAAT
*
98011877 CAAAAGCCCTAACC
1 CAAAATCCCTAACC
*
98011891 AAAAATCCCTAACC
1 CAAAATCCCTAACC
98011905 CAAAATCCC
1 CAAAATCCC
98011914 CAAATTCAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.41, G:0.03, T:0.11
Consensus pattern (14 bp):
CAAAATCCCTAACC
Found at i:98011929 original size:28 final size:28
Alignment explanation
Indices: 98011898--98011961 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
98011888 ACCAAAAATC
* * *
98011898 CCTAACCCAAAATCCCCAAATTCAACAA
1 CCTAAACCAAAATCCCCAAACTCAAAAA
*
98011926 CCTAAACCAAAATCTCCAAACTCAAAAA
1 CCTAAACCAAAATCCCCAAACTCAAAAA
98011954 CCCTAAAC
1 -CCTAAAC
98011962 ATAAATAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 24 0.77
29 7 0.23
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (28 bp):
CCTAAACCAAAATCCCCAAACTCAAAAA
Found at i:98011952 original size:43 final size:40
Alignment explanation
Indices: 98011859--98011952 Score: 93
Period size: 43 Copynumber: 2.2 Consensus size: 40
98011849 CGAAAATAAT
98011859 AAACCAAAACCCCAAAATCAAAAGCCCTAACCAAAAATCCC
1 AAACCAAAACCCCAAAATCAAAA-CCCTAACCAAAAATCCC
* *
98011900 TAACCCAAAATCCCCAAATTCAACAA-CCTAAACC-AAAATCTCC
1 -AAACCAAAA-CCCCAAAATCAA-AACCCT-AACCAAAAATC-CC
98011943 AAACTCAAAA
1 AAAC-CAAAA
98011953 ACCCTAAACA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
42 20 0.45
43 22 0.50
44 2 0.05
ACGTcount: A:0.52, C:0.35, G:0.01, T:0.12
Consensus pattern (40 bp):
AAACCAAAACCCCAAAATCAAAACCCTAACCAAAAATCCC
Found at i:98012503 original size:16 final size:17
Alignment explanation
Indices: 98012482--98012516 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
98012472 CTTTACGCAT
98012482 TACTTTTTA-AAAAAAA
1 TACTTTTTACAAAAAAA
*
98012498 TACTTTTTACATAAAAA
1 TACTTTTTACAAAAAAA
98012515 TA
1 TA
98012517 ATAAGAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (17 bp):
TACTTTTTACAAAAAAA
Found at i:98014317 original size:26 final size:26
Alignment explanation
Indices: 98014287--98014343 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
98014277 GACATTTTTT
*
98014287 TTAATTTT-AATTTCAACTATTTAA-TA
1 TTAATTTTAAAATT-AACT-TTTAAGTA
98014313 TTAATTTTAAAATTAACTTTTAAGTA
1 TTAATTTTAAAATTAACTTTTAAGTA
98014339 TTAAT
1 TTAAT
98014344 AATCCTTTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 5 0.18
26 19 0.68
27 4 0.14
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (26 bp):
TTAATTTTAAAATTAACTTTTAAGTA
Found at i:98014874 original size:51 final size:51
Alignment explanation
Indices: 98014798--98014906 Score: 191
Period size: 51 Copynumber: 2.1 Consensus size: 51
98014788 AAAGAGTAAG
* *
98014798 GATCACAATTGCTATACTGAATGTATTGGTAACTCACTGAGTCAAGCTTGC
1 GATCACAATTGCTATACTAAATGTATTGGTAACTCACTAAGTCAAGCTTGC
98014849 GATCACAATTGCTATACTAAATGTATTGGTAACTCACTAAGTCAAGCTTGC
1 GATCACAATTGCTATACTAAATGTATTGGTAACTCACTAAGTCAAGCTTGC
*
98014900 GAGCACA
1 GATCACA
98014907 TAAAATTTCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.29
Consensus pattern (51 bp):
GATCACAATTGCTATACTAAATGTATTGGTAACTCACTAAGTCAAGCTTGC
Found at i:98017346 original size:41 final size:41
Alignment explanation
Indices: 98017265--98017346 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
98017255 TGATTACTGA
* ** ** *
98017265 TTAATGTATATCTGATACTGTTACTGTGATGGACTCAGGCC
1 TTAATGCATATCTGATACTGAAACTGAAATGGACTAAGGCC
*
98017306 TTAATGCATATCTGATACTGAAACTGAAATGGGCTAAGGCC
1 TTAATGCATATCTGATACTGAAACTGAAATGGACTAAGGCC
98017347 GAACTGCTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (41 bp):
TTAATGCATATCTGATACTGAAACTGAAATGGACTAAGGCC
Found at i:98017386 original size:33 final size:33
Alignment explanation
Indices: 98017321--98017386 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
98017311 GCATATCTGA
* *
98017321 TACTGAAACTGAAATGGGCTAAGGCCGAACTGC
1 TACTGAAACTGAAATGGGCTAAGACAGAACTGC
*
98017354 TACTGAAACTGAAATGGGCTTAGACTAG-ACTGC
1 TACTGAAACTGAAATGGGCTAAGAC-AGAACTGC
98017387 ATTTGACTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (33 bp):
TACTGAAACTGAAATGGGCTAAGACAGAACTGC
Found at i:98035152 original size:22 final size:24
Alignment explanation
Indices: 98035103--98035155 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
98035093 ATTGTTTAAC
* *
98035103 ATATCAGAGTTATATCATATAGCT
1 ATATCAGAGTTATATCACATAGAT
98035127 -TATCAGAG-TATATCACATA-AT
1 ATATCAGAGTTATATCACATAGAT
98035148 ATATCAGA
1 ATATCAGA
98035156 CATATCCTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 1 0.04
22 17 0.65
23 8 0.31
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (24 bp):
ATATCAGAGTTATATCACATAGAT
Found at i:98035194 original size:65 final size:65
Alignment explanation
Indices: 98035118--98035250 Score: 266
Period size: 65 Copynumber: 2.0 Consensus size: 65
98035108 AGAGTTATAT
98035118 CATATAGCTTATCAGAGTATATCACATAATATATCAGACATATCCTACCCCCATCTGCTATACAC
1 CATATAGCTTATCAGAGTATATCACATAATATATCAGACATATCCTACCCCCATCTGCTATACAC
98035183 CATATAGCTTATCAGAGTATATCACATAATATATCAGACATATCCTACCCCCATCTGCTATACAC
1 CATATAGCTTATCAGAGTATATCACATAATATATCAGACATATCCTACCCCCATCTGCTATACAC
98035248 CAT
1 CAT
98035251 CTCCGTCCAA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 68 1.00
ACGTcount: A:0.35, C:0.28, G:0.08, T:0.29
Consensus pattern (65 bp):
CATATAGCTTATCAGAGTATATCACATAATATATCAGACATATCCTACCCCCATCTGCTATACAC
Found at i:98036457 original size:14 final size:14
Alignment explanation
Indices: 98036438--98036464 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
98036428 TGGAAAGGAG
98036438 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
98036452 AAAAAAATAAAAA
1 AAAAAAATAAAAA
98036465 GAAAGAGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (14 bp):
AAAAAAATAAAAAT
Found at i:98044801 original size:20 final size:20
Alignment explanation
Indices: 98044762--98044858 Score: 81
Period size: 20 Copynumber: 4.8 Consensus size: 20
98044752 TTTTGAAACA
*
98044762 ATTTTAAAATCAAGTTAAAATG
1 ATTTT-AAA-CAAGTCAAAATG
*
98044784 ATTTTAACCAAGTCAAAATG
1 ATTTTAAACAAGTCAAAATG
* * * * *
98044804 ATTTCAATCAAGTTAAATTC
1 ATTTTAAACAAGTCAAAATG
98044824 A-TTTAAACACA-TCAAAATG
1 ATTTTAAACA-AGTCAAAATG
98044843 ATTTTCAAACAAGTCA
1 ATTTT-AAACAAGTCA
98044859 GAATTGTTCC
Statistics
Matches: 59, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
19 12 0.20
20 32 0.54
21 10 0.17
22 5 0.08
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.33
Consensus pattern (20 bp):
ATTTTAAACAAGTCAAAATG
Found at i:98044840 original size:39 final size:41
Alignment explanation
Indices: 98044769--98044856 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 41
98044759 ACAATTTTAA
* *
98044769 AATCAAGTTAAAATGATTTTAACCAAGTCAAAATGA-TTTC
1 AATCAAGTTAAAATCATTTAAACCAAGTCAAAATGATTTTC
*
98044809 AATCAAGTTAAATTCATTTAAA-CACA-TCAAAATGATTTTC
1 AATCAAGTTAAAATCATTTAAACCA-AGTCAAAATGATTTTC
*
98044849 AAACAAGT
1 AATCAAGT
98044857 CAGAATTGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
39 11 0.26
40 31 0.74
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.32
Consensus pattern (41 bp):
AATCAAGTTAAAATCATTTAAACCAAGTCAAAATGATTTTC
Found at i:98047793 original size:17 final size:17
Alignment explanation
Indices: 98047771--98047803 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
98047761 TGTAGCTTCC
98047771 TTTGAAAGCTT-TAAAAA
1 TTTGAAA-CTTCTAAAAA
98047788 TTTGAAACTTCTAAAA
1 TTTGAAACTTCTAAAA
98047804 GAGGTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (17 bp):
TTTGAAACTTCTAAAAA
Found at i:98048365 original size:18 final size:20
Alignment explanation
Indices: 98048326--98048366 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
98048316 CGGTTTTTGT
98048326 AATAATAGTAATAAAGACAA
1 AATAATAGTAATAAAGACAA
*
98048346 AATAAT-GTAA-AAAGATAA
1 AATAATAGTAATAAAGACAA
98048364 AAT
1 AAT
98048367 TCAAGAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 10 0.50
19 4 0.20
20 6 0.30
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (20 bp):
AATAATAGTAATAAAGACAA
Found at i:98057899 original size:18 final size:18
Alignment explanation
Indices: 98057875--98057916 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
98057865 TTAAAAGATT
*
98057875 ATTTATATA-ATTTTTAG
1 ATTTATATATATATTTAG
98057892 AGTTTATATATATATTTAG
1 A-TTTATATATATATTTAG
98057911 ATTTAT
1 ATTTAT
98057917 TTTTATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 13 0.59
19 8 0.36
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (18 bp):
ATTTATATATATATTTAG
Found at i:98057923 original size:18 final size:19
Alignment explanation
Indices: 98057873--98057945 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 19
98057863 ATTTAAAAGA
*
98057873 TTATTTATATAATTTTTAGAGT
1 TTATTT-TAT-ATATTTAGA-T
*
98057895 TTA-TATATATATTTAGAT
1 TTATTTTATATATTTAGAT
98057913 TTATTTTTATATATTTA-A-
1 TTA-TTTTATATATTTAGAT
98057931 TTATTTTATATATTT
1 TTATTTTATATATTT
98057946 TTATATTTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
17 12 0.26
18 7 0.15
19 9 0.20
20 14 0.30
21 1 0.02
22 3 0.07
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (19 bp):
TTATTTTATATATTTAGAT
Found at i:98057927 original size:10 final size:10
Alignment explanation
Indices: 98057900--98057957 Score: 52
Period size: 10 Copynumber: 6.2 Consensus size: 10
98057890 AGAGTTTATA
*
98057900 TATATATTTA
1 TATATATTTT
* *
98057910 GATTTATTTT
1 TATATATTTT
98057920 TATATA-TTT
1 TATATATTTT
*
98057929 AAT-TA-TTT
1 TATATATTTT
98057937 TATATATTTT
1 TATATATTTT
98057947 TATAT-TTTT
1 TATATATTTT
98057956 TA
1 TA
98057958 AAATTTCTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
8 7 0.18
9 13 0.33
10 19 0.49
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (10 bp):
TATATATTTT
Found at i:98057952 original size:17 final size:16
Alignment explanation
Indices: 98057912--98057954 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
98057902 TATATTTAGA
98057912 TTTAT-TTTTATATAT
1 TTTATATTTTATATAT
*
98057927 TTAATTATTTTATATATT
1 TTTA-TATTTTATATA-T
98057945 TTTATATTTT
1 TTTATATTTT
98057955 TTAAAATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 3 0.13
16 1 0.04
17 15 0.65
18 4 0.17
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATATTTTATATAT
Found at i:98060844 original size:14 final size:14
Alignment explanation
Indices: 98060806--98060848 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
98060796 CAAAATGTAC
98060806 AATATAATTAAA-T
1 AATATAATTAAATT
98060819 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
98060834 AA-ATAATTTAATT
1 AATATAATTAAATT
98060847 AA
1 AA
98060849 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:98065995 original size:25 final size:25
Alignment explanation
Indices: 98065964--98066014 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
98065954 TTTAATTAGA
98065964 AAGAAATTTTAATTAATCAATCTAG
1 AAGAAATTTTAATTAATCAATCTAG
98065989 AAGAAATTTTAATTAATCAATCTAG
1 AAGAAATTTTAATTAATCAATCTAG
98066014 A
1 A
98066015 GTCAGTTGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.35
Consensus pattern (25 bp):
AAGAAATTTTAATTAATCAATCTAG
Found at i:98067095 original size:6 final size:6
Alignment explanation
Indices: 98067084--98067113 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
98067074 TGGATGAACA
*
98067084 TCTGAT TCTGAT TCTAAT TCTGAT TCTGAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT
98067114 GTAGATGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
TCTGAT
Found at i:98072646 original size:31 final size:31
Alignment explanation
Indices: 98072590--98072649 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
98072580 TTCAAAATAT
* ** *
98072590 ATATATAAATTGAAAATGCACATAAAAAAGA
1 ATATATAAATTAAAAATAAAAATAAAAAAGA
98072621 ATATATAAATTAAAAATAAAAATAAAAAA
1 ATATATAAATTAAAAATAAAAATAAAAAA
98072650 TTTAGTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.23
Consensus pattern (31 bp):
ATATATAAATTAAAAATAAAAATAAAAAAGA
Found at i:98073731 original size:22 final size:21
Alignment explanation
Indices: 98073706--98073805 Score: 88
Period size: 19 Copynumber: 5.0 Consensus size: 21
98073696 TACAAATTAA
*
98073706 ATCTATAAGATTACAAAATCAT
1 ATCTATAAGATTGC-AAATCAT
* *
98073728 ATCTTCTAAGATTGCATATCAT
1 ATC-TATAAGATTGCAAATCAT
98073750 ATC--TAAGATTGC-AATCAT
1 ATCTATAAGATTGCAAATCAT
*
98073768 ATCTAT--GATTGCATATCAT
1 ATCTATAAGATTGCAAATCAT
*
98073787 ATC--TAAGATTGCATATCAT
1 ATCTATAAGATTGCAAATCAT
98073806 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
17 1 0.01
18 14 0.21
19 30 0.45
20 1 0.01
22 12 0.18
23 9 0.13
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (21 bp):
ATCTATAAGATTGCAAATCAT
Found at i:98073756 original size:19 final size:19
Alignment explanation
Indices: 98073732--98073805 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
98073722 AATCATATCT
98073732 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98073751 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
98073769 TCTATGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98073788 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
98073806 TGAAGATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 17 0.33
19 35 0.67
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:98073783 original size:37 final size:38
Alignment explanation
Indices: 98073725--98073805 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 38
98073715 ATTACAAAAT
98073725 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
*
98073761 CA-ATCATATCTATGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
98073798 CATATCAT
1 CATATCAT
98073806 TGAAGATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 30 0.73
38 5 0.12
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:98073954 original size:21 final size:20
Alignment explanation
Indices: 98073924--98073962 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
98073914 TTGGACTTCG
*
98073924 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGATTTATTAT
98073944 TTTTGTTTTTGGATTTATT
1 TTTT-TTTTTGGATTTATT
98073963 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.10, C:0.00, G:0.15, T:0.74
Consensus pattern (20 bp):
TTTTTTTTTGGATTTATTAT
Found at i:98074210 original size:45 final size:45
Alignment explanation
Indices: 98074155--98074428 Score: 297
Period size: 45 Copynumber: 6.1 Consensus size: 45
98074145 GGAAGGCGAT
* *
98074155 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
98074200 ATCTGTTATCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
98074245 ATCTATT-T-TTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTT-GATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
98074289 ATCTGTTATCTCTGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
98074334 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTTGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* *
98074379 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
98074426 ATC
1 ATC
98074429 ATCTTGGATC
Statistics
Matches: 187, Mismatches: 31, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
43 8 0.04
44 42 0.22
45 104 0.56
46 3 0.02
47 19 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:98074288 original size:89 final size:89
Alignment explanation
Indices: 98074169--98074337 Score: 295
Period size: 89 Copynumber: 1.9 Consensus size: 89
98074159 GCTATCTTTG
98074169 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCT-TCGATCTGCTCCCCATCTAATA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCT-GATCTGCTCCCCATCTAATA
98074233 CAGAGATGCCAAATCTATTTTTTCA
65 CAGAGATGCCAAATCTATTTTTTCA
* * *
98074258 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCTGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCTCCCCATCTAATAC
98074323 AGAGATGCCAAATCT
66 AGAGATGCCAAATCT
98074338 GTCATCTTGG
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
89 75 0.99
90 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.31
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCTCCCCATCTAATAC
AGAGATGCCAAATCTATTTTTTCA
Found at i:98074497 original size:78 final size:78
Alignment explanation
Indices: 98074368--98074662 Score: 441
Period size: 78 Copynumber: 3.8 Consensus size: 78
98074358 ATGTAAACAC
98074368 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
98074433 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
98074446 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
98074510 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
** * * *
98074524 ATGAAGGTCAGATCTATTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATTATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
98074589 TGGATCTACTTCA
66 TGGATCTGCTTCA
** * **
98074602 ATGAAGGTCAGATCTGCTATGTCTTTC-ATCTGCTTTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTC-TTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
98074663 TGTTTCTTCA
Statistics
Matches: 196, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
77 2 0.01
78 189 0.96
79 5 0.03
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:98083241 original size:20 final size:20
Alignment explanation
Indices: 98083216--98083253 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
98083206 GATATGATAC
98083216 TAAAAT-TATTAAAAAAAAAT
1 TAAAATATA-TAAAAAAAAAT
98083236 TAAAATATATAAAAAAAA
1 TAAAATATATAAAAAAAA
98083254 TCCAGGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
TAAAATATATAAAAAAAAAT
Found at i:98083568 original size:19 final size:19
Alignment explanation
Indices: 98083544--98083632 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
98083534 TCATATTTTT
98083544 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
98083563 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
98083581 TAAGATT--ATATCATATC
1 TAAGATTGCATATCATATC
98083598 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
98083617 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
98083633 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
16 1 0.01
17 15 0.22
18 15 0.22
19 36 0.54
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:98083640 original size:36 final size:37
Alignment explanation
Indices: 98083544--98083632 Score: 155
Period size: 35 Copynumber: 2.4 Consensus size: 37
98083534 TCATATTTTT
98083544 TAAGATTGCATATCATATCTAAGATTGCAATCATATC
1 TAAGATTGCATATCATATCTAAGATTGCAATCATATC
98083581 TAAGATT--ATATCATATCTAAGATTGCATATCATATC
1 TAAGATTGCATATCATATCTAAGATTGCA-ATCATATC
98083617 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
98083633 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
35 20 0.41
36 15 0.31
37 7 0.14
38 7 0.14
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (37 bp):
TAAGATTGCATATCATATCTAAGATTGCAATCATATC
Found at i:98083786 original size:19 final size:19
Alignment explanation
Indices: 98083751--98083787 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
98083741 TTGGACTTCG
**
98083751 TTTTTTTTTGGGTTTATTA
1 TTTTTTTTTGGACTTATTA
98083770 TTTTTTTTTGGACTTATT
1 TTTTTTTTTGGACTTATT
98083788 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.03, G:0.14, T:0.73
Consensus pattern (19 bp):
TTTTTTTTTGGACTTATTA
Found at i:98085987 original size:44 final size:42
Alignment explanation
Indices: 98085914--98086072 Score: 142
Period size: 44 Copynumber: 3.7 Consensus size: 42
98085904 GGTATTGATC
* * * *
98085914 TGAATTATCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATT
1 TGAATTA-CGTATAAGACCATGTCCGGGACACAGGCATCGATT
* *
98085957 TGAAATCTACGTGTAAGACCATGTCCGGGACATC-GGCATCGTATC
1 TG-AAT-TACGTATAAGACCATGTCCGGGACA-CAGGCATCG-ATT
* ** *
98086002 TGAATT-CGTATAAGACCCTGTTTGGGACAGAGGCATCGATAT
1 TGAATTACGTATAAGACCATGTCCGGGACACAGGCATCGAT-T
* *
98086044 TGAATTACATATAAGACCACGTCCGGGAC
1 TGAATTACGTATAAGACCATGTCCGGGAC
98086073 GTTGGCATTG
Statistics
Matches: 94, Mismatches: 15, Indels: 14
0.76 0.12 0.11
Matches are distributed among these distances:
41 2 0.02
42 32 0.34
43 20 0.21
44 33 0.35
45 7 0.07
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (42 bp):
TGAATTACGTATAAGACCATGTCCGGGACACAGGCATCGATT
Found at i:98086080 original size:43 final size:42
Alignment explanation
Indices: 98085970--98086080 Score: 102
Period size: 42 Copynumber: 2.6 Consensus size: 42
98085960 AATCTACGTG
* * * *
98085970 TAAGACCATGTCCGGGACATCGGCATCGTATCTGAATTCGTA
1 TAAGACCACGTCCGGGACGTAGGCATCGTATCTGAATTCATA
**
98086012 TAAGACC-CTGTTTGGGACAG-AGGCATCGATAT-TGAATTACATA
1 TAAGACCAC-GTCCGGGAC-GTAGGCATCG-TATCTGAATT-CATA
*
98086055 TAAGACCACGTCCGGGACGTTGGCAT
1 TAAGACCACGTCCGGGACGTAGGCAT
98086081 TGTACTCGTT
Statistics
Matches: 54, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
42 28 0.52
43 25 0.46
44 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (42 bp):
TAAGACCACGTCCGGGACGTAGGCATCGTATCTGAATTCATA
Found at i:98089384 original size:19 final size:18
Alignment explanation
Indices: 98089362--98089403 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
98089352 AAAATTCAAA
*
98089362 AAAATATAAAAATTATTTT
1 AAAA-ATAAAAATTAATTT
*
98089381 AAAAATTAAAATTAATTT
1 AAAAATAAAAATTAATTT
98089399 AAAAA
1 AAAAA
98089404 GTATGAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAAATAAAAATTAATTT
Found at i:98091301 original size:91 final size:91
Alignment explanation
Indices: 98091124--98091302 Score: 213
Period size: 91 Copynumber: 2.0 Consensus size: 91
98091114 AATTTATCTA
* * *
98091124 CAAACACTGGTGGTTTATCCACAAACATACTGGTAGCTTTTATATGCAAATGCATTGTGCATTCA
1 CAAACACTAGTGGTTTATCCACAAACATACTGGCAACTTTTATATGCAAATGCATTGTGCATTCA
* *
98091189 CAACTTACATGTAGCATATTAACCTT
66 CAACTCACATGCAGCATATTAACCTT
* * * *
98091215 CAAACACTAGTGGTTTATCCAC-AACTTTTACTGGCAACTTTTATTTGCAAACT-CGTTGTGTAT
1 CAAACACTAGTGGTTTATCCACAAAC--ATACTGGCAACTTTTATATGCAAA-TGCATTGTGCAT
98091278 TCACAAC-CAC-TGGCAGCATATTAAC
63 TCACAACTCACAT-GCAGCATATTAAC
98091303 TTGCAACATT
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
90 4 0.05
91 35 0.47
92 35 0.47
93 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (91 bp):
CAAACACTAGTGGTTTATCCACAAACATACTGGCAACTTTTATATGCAAATGCATTGTGCATTCA
CAACTCACATGCAGCATATTAACCTT
Found at i:98094611 original size:3 final size:3
Alignment explanation
Indices: 98094605--98094798 Score: 60
Period size: 3 Copynumber: 63.0 Consensus size: 3
98094595 ACTACTATAT
* *** *
98094605 TTA TTA TTA TTA TTA TAA TT- TT- TTA TTA CCC TT- TTA ATA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * **
98094649 TTA TTA TTA TTA TTTA CTA TTA TTA TTGG TAA TCTA TTA CTA TCC TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TT-A TTA T-TA TTA TTA TTA TTA
* * * * *
98094697 TGA GTGTA TTA TTA TT- TCCTA TTT TTCA -TA TTG TTG TTG TTA TTA
1 TTA -T-TA TTA TTA TTA T--TA TTA TT-A TTA TTA TTA TTA TTA TTA
* * *
98094742 GTA TATA TTA TTA TTA TTA TTC TCAA TTA TTA TTA TT- TCCTA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T--TA TTA TTA
98094790 TTA TTA TTA
1 TTA TTA TTA
98094799 CTAATATCAC
Statistics
Matches: 141, Mismatches: 32, Indels: 36
0.67 0.15 0.17
Matches are distributed among these distances:
2 11 0.08
3 113 0.80
4 14 0.10
5 3 0.02
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:98094630 original size:19 final size:19
Alignment explanation
Indices: 98094603--98094675 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
98094593 CTACTACTAT
98094603 ATTTATTATTATTATTATA
1 ATTTATTATTATTATTATA
* *** *
98094622 ATTTTTTATTACCCTTTTA
1 ATTTATTATTATTATTATA
* *
98094641 ATATATTATTATTATTATT
1 ATTTATTATTATTATTATA
*
98094660 ATTTACTATTATTATT
1 ATTTATTATTATTATT
98094676 GGTAATCTAT
Statistics
Matches: 40, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (19 bp):
ATTTATTATTATTATTATA
Found at i:98094669 original size:22 final size:22
Alignment explanation
Indices: 98094644--98094798 Score: 68
Period size: 22 Copynumber: 6.8 Consensus size: 22
98094634 CCTTTTAATA
98094644 TATTATTATTATTATTATTTAC
1 TATTATTATTATTATTATTTAC
* *
98094666 TATTATTATTGGTAATCTA-TTAC
1 TATTATTATT-ATTAT-TATTTAC
* *
98094689 TATCCTTATGAGTGTATTATTATTTCC
1 TA---TTATTA-T-TATTATTATTTAC
* * *
98094716 TATTTTTCA-TATTGTTGTTGT--
1 TATTATT-ATTATTATTATT-TAC
* *
98094737 TATTAGTATATATTATTA-TTAT
1 TATTATTAT-TATTATTATTTAC
* * *
98094759 TATTCTCAATTATTATTATTTCC
1 TATTAT-TATTATTATTATTTAC
98094782 TATTATTATTATTATTA
1 TATTATTATTATTATTA
98094799 CTAATATCAC
Statistics
Matches: 96, Mismatches: 21, Indels: 32
0.64 0.14 0.21
Matches are distributed among these distances:
20 2 0.02
21 6 0.06
22 46 0.48
23 19 0.20
24 5 0.05
25 1 0.01
26 7 0.07
27 9 0.09
28 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.06, T:0.59
Consensus pattern (22 bp):
TATTATTATTATTATTATTTAC
Found at i:98094760 original size:19 final size:19
Alignment explanation
Indices: 98094736--98094805 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 19
98094726 ATTGTTGTTG
*
98094736 TTATTAGTATATATTATTA
1 TTATTACTATATATTATTA
* *
98094755 TTATTATTCTCA-ATTATTA
1 TTATTACTAT-ATATTATTA
*
98094774 TTATTTCCTAT-TATTATTA
1 TTA-TTACTATATATTATTA
98094793 TTATTACTA-ATAT
1 TTATTACTATATAT
98094806 CACTACTATC
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
18 8 0.20
19 28 0.68
20 5 0.12
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.59
Consensus pattern (19 bp):
TTATTACTATATATTATTA
Found at i:98094770 original size:16 final size:16
Alignment explanation
Indices: 98094751--98094794 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
98094741 AGTATATATT
98094751 ATTATTATTA-TTCTCA
1 ATTATTATTATTTC-CA
*
98094767 ATTATTATTATTTCCT
1 ATTATTATTATTTCCA
98094783 ATTATTATTATT
1 ATTATTATTATT
98094795 ATTACTAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 23 0.88
17 3 0.12
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTATTATTATTTCCA
Found at i:98095242 original size:12 final size:12
Alignment explanation
Indices: 98095201--98095242 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
98095191 CTATAATCAT
98095201 TATTATTAATAC
1 TATTATTAATAC
* *
98095213 TAATATTAATAT
1 TATTATTAATAC
*
98095225 TCTTATTAATAC
1 TATTATTAATAC
98095237 TATTAT
1 TATTAT
98095243 CATTATCATT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTATTAATAC
Found at i:98099547 original size:19 final size:19
Alignment explanation
Indices: 98099493--98099547 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
98099483 TTTTTAGAGT
* **
98099493 TTATATATATATATTTAGA
1 TTATTTATATATATTTTCA
98099512 TTATTTATATACT-TTTTCA
1 TTATTTATATA-TATTTTCA
*
98099531 TTATTTTTATATATTTT
1 TTATTTATATATATTTT
98099548 TTAAATTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 1 0.03
19 28 0.93
20 1 0.03
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (19 bp):
TTATTTATATATATTTTCA
Found at i:98099555 original size:19 final size:19
Alignment explanation
Indices: 98099476--98099577 Score: 62
Period size: 21 Copynumber: 5.1 Consensus size: 19
98099466 AATGTATATA
* * *
98099476 TATATAATTTTTAGAGTTTA
1 TATATATTTTTTA-AATTTT
* *
98099496 TATATATATATTTAGATTATT
1 TATATAT-TTTTTAAATT-TT
* *
98099517 TATATACTTTTTCATTATTTT
1 TATATA-TTTTTTA-AATTTT
98099538 TATATATTTTTTAAATTTT
1 TATATATTTTTTAAATTTT
* *
98099557 CTTTATA-TTTTTATATTTT
1 -TATATATTTTTTAAATTTT
98099576 TA
1 TA
98099578 AAAATTATAT
Statistics
Matches: 64, Mismatches: 13, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
18 1 0.02
19 16 0.25
20 19 0.30
21 24 0.38
22 4 0.06
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (19 bp):
TATATATTTTTTAAATTTT
Found at i:98099628 original size:21 final size:20
Alignment explanation
Indices: 98099604--98099643 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
98099594 TAAAATTATG
98099604 TATATATATTTCTT-TATTTTT
1 TATATA-ATTT-TTATATTTTT
98099625 TATATAATTTTTATATTTT
1 TATATAATTTTTATATTTT
98099644 AACAAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 10 0.56
21 6 0.33
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (20 bp):
TATATAATTTTTATATTTTT
Found at i:98099630 original size:19 final size:18
Alignment explanation
Indices: 98099606--98099644 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
98099596 AAATTATGTA
* *
98099606 TATATATTTCTTTATTTTT
1 TATATAATT-TTTATATTT
98099625 TATATAATTTTTATATTT
1 TATATAATTTTTATATTT
98099643 TA
1 TA
98099645 ACAAATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (18 bp):
TATATAATTTTTATATTT
Found at i:98101166 original size:40 final size:40
Alignment explanation
Indices: 98101114--98101241 Score: 123
Period size: 41 Copynumber: 3.1 Consensus size: 40
98101104 GCAAAAATTG
*
98101114 TAAAAAGCAGAGCAATAGCGGCGTTTTACCAAAAACGCCGC
1 TAAAAAGCAGAGCAATAGCGGAGTTTTA-CAAAAACGCCGC
* ***
98101155 TAAAAA-CAGAGCAATAGCGGTGTTTTTGTTAAAACGCCGC
1 TAAAAAGCAGAGCAATAGCGGAG-TTTTACAAAAACGCCGC
** * * * *
98101195 TAAAAATTATAGAAATAGCGGAGTTTTACAGAAAATGCCAC
1 TAAAAAGCAGAGCAATAGCGGAGTTTTACA-AAAACGCCGC
98101236 TAAAAA
1 TAAAAA
98101242 CCAAAGAATT
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
40 35 0.49
41 36 0.51
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.21
Consensus pattern (40 bp):
TAAAAAGCAGAGCAATAGCGGAGTTTTACAAAAACGCCGC
Found at i:98101392 original size:45 final size:45
Alignment explanation
Indices: 98101336--98101454 Score: 132
Period size: 45 Copynumber: 2.6 Consensus size: 45
98101326 ATTTAATCCC
* *
98101336 TAAAACCCTAAACCCCAAAAAACATAAACACTAATCTATAACCCT
1 TAAAACACTAAACCCCAAAAAACATAAACACTAAACTATAACCCT
** *
98101381 TAAAACACTAAACCCC-CTAAACACTAAACACTAAACTATAACCTT
1 TAAAACACTAAACCCCAAAAAACA-TAAACACTAAACTATAACCCT
*
98101426 TAAAACCCTAATTAAACCCCAAAAAACAT
1 TAAAA--C--ACTAAACCCCAAAAAACAT
98101455 CATATGGATG
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
44 5 0.08
45 39 0.65
47 1 0.02
49 10 0.17
50 5 0.08
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.18
Consensus pattern (45 bp):
TAAAACACTAAACCCCAAAAAACATAAACACTAAACTATAACCCT
Found at i:98102650 original size:230 final size:228
Alignment explanation
Indices: 98102292--98102811 Score: 573
Period size: 230 Copynumber: 2.3 Consensus size: 228
98102282 GTTTTCTTTG
* ** ** * *
98102292 GATTTTTAGTGGCGTTTTAGGTTAAAACGCCACAATAGGGTTGATTTAGCGGCGCAAGGTTATAA
1 GATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGTTTTCCTTTAGCGGCGCTAGGTGATAA
* * *
98102357 ACGCCACTAAGGGTTATTTTGTTTAGAGCAAAACGGTGTAGTTTTTATGGATTTTTAGTGGCGTT
66 ACGCCACTAAAGGTTATTCTGTTCAGAGCAAAACGGTGTAGTTTTTATGGATTTTTAGTGGCGTT
* * * * * *
98102422 TTTCGTTCAAACGCCACAATAGGTTTG-ATTTAGCGGCGCTAAGGTATAAACGCCACTAATGGTT
131 TTACGGTCAAAAGCCACAATAGATTTGCATTTAGCGGCGCTAAGG-AAAAACGCCACTAA-AGTT
98102486 AATT-TGTTTATATCAAAACGATGTAGTTTTATTC
194 AATTCTGTTTATATCAAAACGATGTAGTTTTATTC
* * * * *
98102520 GATTATTAGTGGCGTTTTAGGGTAAAACACCGGAATAGTTTCTCCTTTAGCGGCGCTTGGTGATA
1 GATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGTTT-TCCTTTAGCGGCGCTAGGTGATA
* * * *
98102585 ACACGCCACTAAATGTTATTCTGTTCATATG-AAAAC-GTCGTCGTTTTTTTGGATTTTTAGTGG
65 A-ACGCCACTAAAGGTTATTCTGTTCAGA-GCAAAACGGT-GTAGTTTTTATGGATTTTTAGTGG
* * * * * *
98102648 CGTTTTAGGGTGAAAAGCCGCAATTGATTTGCCTTTAGCGGCGCTACGGAAAAACGCCACTAAAG
127 CGTTTTACGGTCAAAAGCCACAATAGATTTGCATTTAGCGGCGCTAAGGAAAAACGCCACTAAAG
* * * * * *
98102713 TTTATTCTGTTTATATCAAAATGGTGTCGTTTTGTTT
192 TTAATTCTGTTTATATCAAAACGATGTAGTTTTATTC
* * * *
98102750 GTTTTTTAGTGGCG-TTTATGTTAAAACGCCGCAATTGGTTTGCCTTTAGCGGCGCTAGGTGA
1 GATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAA-TAGTTTTCCTTTAGCGGCGCTAGGTGA
98102812 AAATGCCGCA
Statistics
Matches: 239, Mismatches: 46, Indels: 13
0.80 0.15 0.04
Matches are distributed among these distances:
228 34 0.14
229 62 0.26
230 127 0.53
231 16 0.07
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (228 bp):
GATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGTTTTCCTTTAGCGGCGCTAGGTGATAA
ACGCCACTAAAGGTTATTCTGTTCAGAGCAAAACGGTGTAGTTTTTATGGATTTTTAGTGGCGTT
TTACGGTCAAAAGCCACAATAGATTTGCATTTAGCGGCGCTAAGGAAAAACGCCACTAAAGTTAA
TTCTGTTTATATCAAAACGATGTAGTTTTATTC
Found at i:98102814 original size:114 final size:114
Alignment explanation
Indices: 98102282--98102814 Score: 501
Period size: 114 Copynumber: 4.6 Consensus size: 114
98102272 AGACGACACC
* * * *
98102282 GTTTTCTTTGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCACAATAGGGTTG-ATTTAGCGGCG
1 GTTTT-TTT-GATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATTGGTTTGCCTTTAGCGGCG
* * * * * * * *
98102346 CAAGGTTATAAACGCCACTAAGGGTTATTTTGTTTAGAGCAAAACGGTGTA
64 CTAGGTGAAAAACGCCACTAAAGTTTATTCTGTTTATATCAAAACGGTGTA
* ** * * * *
98102397 GTTTTTATGGATTTTTAGTGGCGTTTTTCGTTCAAACGCCACAATAGGTTTG-ATTTAGCGGCGC
1 GTTTTT-TTGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATTGGTTTGCCTTTAGCGGCGC
* * * *
98102461 TAAGGT-ATAAACGCCACTAATGGTTAATT-TGTTTATATCAAAACGATGTA
65 T-AGGTGAAAAACGCCACTAA-AGTTTATTCTGTTTATATCAAAACGGTGTA
* * * * * * *
98102511 GTTTTATTCGATTATTAGTGGCGTTTTAGGGTAAAACACCGGAA-TAGTTTCTCCTTTAGCGGCG
1 GTTTT-TTTGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATTGGTTT-GCCTTTAGCGGCG
* * * * *
98102575 CTTGGTGATAACACGCCACTAAA-TGTTATTCTGTTCATATGAAAAC-GTCGTC
64 CTAGGTGA-AAAACGCCACTAAAGT-TTATTCTGTTTATATCAAAACGGT-GTA
* *
98102627 GTTTTTTTGGATTTTTAGTGGCGTTTTAGGGTGAAAA-GCCGCAATTGATTTGCCTTTAGCGGCG
1 GTTTTTTT-GATTTTTAGTGGCGTTTTA-GGTTAAAACGCCGCAATTGGTTTGCCTTTAGCGGCG
* * *
98102691 CTACG-GAAAAACGCCACTAAAGTTTATTCTGTTTATATCAAAATGGTGTC
64 CTAGGTGAAAAACGCCACTAAAGTTTATTCTGTTTATATCAAAACGGTGTA
* *
98102741 GTTTTGTTTGTTTTTTAGTGGCG-TTTATGTTAAAACGCCGCAATTGGTTTGCCTTTAGCGGCGC
1 GTTTT-TTTGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATTGGTTTGCCTTTAGCGGCGC
98102805 TAGGTGAAAA
65 TAGGTGAAAA
98102815 TGCCGCAAAT
Statistics
Matches: 346, Mismatches: 53, Indels: 39
0.79 0.12 0.09
Matches are distributed among these distances:
112 6 0.02
113 38 0.11
114 178 0.51
115 45 0.13
116 69 0.20
117 10 0.03
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.37
Consensus pattern (114 bp):
GTTTTTTTGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATTGGTTTGCCTTTAGCGGCGCT
AGGTGAAAAACGCCACTAAAGTTTATTCTGTTTATATCAAAACGGTGTA
Found at i:98102962 original size:59 final size:59
Alignment explanation
Indices: 98102887--98103016 Score: 163
Period size: 59 Copynumber: 2.2 Consensus size: 59
98102877 ACACTGAGTT
* * ** *
98102887 CCCCCTTCTCCTTAGTTTATTTCCC-CCATTTTCCCTTCTTCGAATCCCTAAAATAATCA
1 CCCCATTCTCCCTAGTTTA-TTCCCTCCATTTTCCCTAATTCGAAACCCTAAAATAATCA
* *
98102946 CCCCATTCTCCCTAGTTTATTCCCTCCATTTTCCCTAATTTGAAACCCTAAAATAATTA
1 CCCCATTCTCCCTAGTTTATTCCCTCCATTTTCCCTAATTCGAAACCCTAAAATAATCA
* *
98103005 ACCCTTTCTCCC
1 CCCCATTCTCCC
98103017 CAATTTGAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 5 0.08
59 56 0.92
ACGTcount: A:0.22, C:0.37, G:0.03, T:0.38
Consensus pattern (59 bp):
CCCCATTCTCCCTAGTTTATTCCCTCCATTTTCCCTAATTCGAAACCCTAAAATAATCA
Found at i:98105380 original size:9 final size:9
Alignment explanation
Indices: 98105368--98105398 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
98105358 ATATCATATA
98105368 ATAACTTAC
1 ATAACTTAC
98105377 ATAACTTAC
1 ATAACTTAC
*
98105386 AAAACTTAC
1 ATAACTTAC
98105395 ATAA
1 ATAA
98105399 TACATAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Found at i:98105419 original size:13 final size:13
Alignment explanation
Indices: 98105401--98105430 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
98105391 TTACATAATA
98105401 CATAAATATATAT
1 CATAAATATATAT
98105414 CATAAATATATAT
1 CATAAATATATAT
98105427 CATA
1 CATA
98105431 TCATAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (13 bp):
CATAAATATATAT
Found at i:98105437 original size:56 final size:56
Alignment explanation
Indices: 98105376--98105586 Score: 352
Period size: 56 Copynumber: 3.8 Consensus size: 56
98105366 TAATAACTTA
*
98105376 CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATAT
1 CATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATAT
* * *
98105432 CATAACTTACACAACTAACATAATACATAAATATATTTCATAAATATGTATCATAT
1 CATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATAT
*
98105488 CATAACTTACACAACTTACATAATAC-TCCAAATATATATCATAAATATATATCTTAT
1 CATAACTTACACAACTTACATAATACAT--AAATATATATCATAAATATATATCATAT
98105545 CATAACTTACACAACTTACATAATACATAAATATATATCATA
1 CATAACTTACACAACTTACATAATACATAAATATATATCATA
98105587 TCATAACTTA
Statistics
Matches: 144, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
55 1 0.01
56 91 0.63
57 51 0.35
58 1 0.01
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (56 bp):
CATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATAT
Found at i:98105546 original size:113 final size:112
Alignment explanation
Indices: 98105376--98105586 Score: 361
Period size: 113 Copynumber: 1.9 Consensus size: 112
98105366 TAATAACTTA
98105376 CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATCATAACTTA
1 CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATCATAACTTA
*
98105441 CACAACTAACATAATACATAAATATATTTCATAAATATGTATCATAT
66 CACAACTAACATAATACATAAATATATATCATAAATATGTATCATAT
* *
98105488 CATAACTTACACAACTTACATAATAC-TCCAAATATATATCATAAATATATATCTTATCATAACT
1 CATAACTTACAAAACTTACATAATACAT--AAATATATATCATAAATATATATCATATCATAACT
*
98105552 TACACAACTTACATAATACATAAATATATATCATA
64 TACACAACTAACATAATACATAAATATATATCATA
98105587 TCATAACTTA
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
111 1 0.01
112 25 0.27
113 67 0.72
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (112 bp):
CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATCATAACTTA
CACAACTAACATAATACATAAATATATATCATAAATATGTATCATAT
Found at i:98105623 original size:113 final size:107
Alignment explanation
Indices: 98105355--98105599 Score: 348
Period size: 113 Copynumber: 2.2 Consensus size: 107
98105345 TAATATTTAT
98105355 TATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCATAAA
1 TATATATCATAT-ATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCATAAA
98105420 TATATATCATATCATAACTTACACAACTAACATAATACATAAA
65 TATATATCATATCATAACTTACACAACTAACATAATACATAAA
* * * *
98105463 TATATTTCATAAATATGTATCATATCATAACTTACACAACTTACATAATAC-TCCAAATATATAT
1 TATATATCAT--ATA--TAACTTA-CATAACTTACAAAACTTACATAATACAT--AAATATATAT
* *
98105527 CATAAATATATATCTTATCATAACTTACACAACTTACATAATACATAAA
59 CATAAATATATATCATATCATAACTTACACAACTAACATAATACATAAA
98105576 TATATATCATATCATAACTTACAT
1 TATATATCATAT-ATAACTTACAT
98105600 GCCTTACATA
Statistics
Matches: 120, Mismatches: 9, Indels: 15
0.83 0.06 0.10
Matches are distributed among these distances:
108 9 0.08
109 4 0.03
110 7 0.06
111 8 0.07
112 26 0.22
113 66 0.55
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (107 bp):
TATATATCATATATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCATAAAT
ATATATCATATCATAACTTACACAACTAACATAATACATAAA
Found at i:98105637 original size:9 final size:9
Alignment explanation
Indices: 98105540--98105660 Score: 63
Period size: 9 Copynumber: 13.6 Consensus size: 9
98105530 AAATATATAT
98105540 CTTATCATAA
1 CTTA-CATAA
*
98105550 CTTACACAA
1 CTTACATAA
98105559 CTTACATAA
1 CTTACATAA
98105568 --TACATAA
1 CTTACATAA
* * *
98105575 -ATATATAT
1 CTTACATAA
*
98105583 CATATCATAA
1 CTTA-CATAA
**
98105593 CTTACATGC
1 CTTACATAA
98105602 CTTACATAA
1 CTTACATAA
* * *
98105611 ATGTATATCA
1 CT-TACATAA
*
98105621 -TAACATAA
1 CTTACATAA
98105629 CTTACATAA
1 CTTACATAA
98105638 CTTACA-AA
1 CTTACATAA
*
98105646 GCTTACTTAA
1 -CTTACATAA
98105656 CTTAC
1 CTTAC
98105661 GTAATATATA
Statistics
Matches: 85, Mismatches: 19, Indels: 15
0.71 0.16 0.13
Matches are distributed among these distances:
7 7 0.08
8 11 0.13
9 50 0.59
10 17 0.20
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.34
Consensus pattern (9 bp):
CTTACATAA
Found at i:98105642 original size:36 final size:36
Alignment explanation
Indices: 98105557--98105643 Score: 124
Period size: 36 Copynumber: 2.5 Consensus size: 36
98105547 TAACTTACAC
*
98105557 AACTTACATAA--TACATAAATATATATCATATCAT
1 AACTTACATAACTTACATAAATATATATCATAACAT
** *
98105591 AACTTACATGCCTTACATAAATGTATATCATAACAT
1 AACTTACATAACTTACATAAATATATATCATAACAT
98105627 AACTTACATAACTTACA
1 AACTTACATAACTTACA
98105644 AAGCTTACTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 9 0.20
36 36 0.80
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.33
Consensus pattern (36 bp):
AACTTACATAACTTACATAAATATATATCATAACAT
Found at i:98111274 original size:17 final size:20
Alignment explanation
Indices: 98111235--98111312 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 20
98111225 GGCAGCAGAA
98111235 AGGGAGGCAGCAGCAGCAGCG
1 AGGGAGGCAGCAG-AGCAGCG
98111256 AGGGAGGCAG-AG-GCACGAGCG
1 AGGGAGGCAGCAGAG--C-AGCG
98111277 AGGGAGGCAG-AG-GCAGC-
1 AGGGAGGCAGCAGAGCAGCG
*
98111294 AGCGATGGCAGCAGAGCAG
1 AGGGA-GGCAGCAGAGCAG
98111313 AGCAAAAAGT
Statistics
Matches: 50, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
17 4 0.08
18 9 0.18
19 3 0.06
20 7 0.14
21 27 0.54
ACGTcount: A:0.29, C:0.21, G:0.49, T:0.01
Consensus pattern (20 bp):
AGGGAGGCAGCAGAGCAGCG
Found at i:98111309 original size:21 final size:21
Alignment explanation
Indices: 98111223--98111298 Score: 102
Period size: 21 Copynumber: 3.6 Consensus size: 21
98111213 ACTTAGAGCG
**
98111223 GAGGCAGCAGAAAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
98111244 GCA-GCAGCAGCGAGGGAGGCA
1 G-AGGCAGCAGCGAGGGAGGCA
98111265 GAGGCA-CGAGCGAGGGAGGCA
1 GAGGCAGC-AGCGAGGGAGGCA
98111286 GAGGCAGCAGCGA
1 GAGGCAGCAGCGA
98111299 TGGCAGCAGA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
20 2 0.04
21 45 0.92
22 2 0.04
ACGTcount: A:0.32, C:0.20, G:0.49, T:0.00
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:98111713 original size:43 final size:43
Alignment explanation
Indices: 98111666--98111851 Score: 266
Period size: 43 Copynumber: 4.3 Consensus size: 43
98111656 TCTGTCAAAA
* * * *
98111666 TTAGCGGCG-TTTGCCAGAAAAATGCCGCTAAAGGCCGTGACTT
1 TTAGCGGCGCTTTTCC-GACAAACGCCGCTAAAGGCCATGACTT
* * * *
98111709 TTAGCAGCGCTTTTCCGACAAGCGCCGCTAAAGGCCGTGGCTT
1 TTAGCGGCGCTTTTCCGACAAACGCCGCTAAAGGCCATGACTT
*
98111752 TTAGCGGCGTTTTTCCGACAAACGCCGCTAAAGGCCATGACTT
1 TTAGCGGCGCTTTTCCGACAAACGCCGCTAAAGGCCATGACTT
98111795 TTAGCGGCGCTTTTCCGACAAACGCCGCTAAAGGCCATGACTT
1 TTAGCGGCGCTTTTCCGACAAACGCCGCTAAAGGCCATGACTT
*
98111838 TTAGCGGCGTTTTT
1 TTAGCGGCGCTTTT
98111852 TTAAATAAAC
Statistics
Matches: 129, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
43 124 0.96
44 5 0.04
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.26
Consensus pattern (43 bp):
TTAGCGGCGCTTTTCCGACAAACGCCGCTAAAGGCCATGACTT
Found at i:98112277 original size:16 final size:16
Alignment explanation
Indices: 98112243--98112276 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
98112233 TCATCGAGCA
*
98112243 TTTATTTATTTATCTT
1 TTTATTTATTAATCTT
98112259 TTTATTTATTAAT-TT
1 TTTATTTATTAATCTT
98112274 TTT
1 TTT
98112277 TTCTTTTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTATTTATTAATCTT
Found at i:98112479 original size:3 final size:3
Alignment explanation
Indices: 98112471--98112515 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
98112461 TTTACCTTAT
98112471 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
98112516 CAATTACAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:98115043 original size:20 final size:20
Alignment explanation
Indices: 98115020--98115096 Score: 109
Period size: 20 Copynumber: 3.7 Consensus size: 20
98115010 TATTAACATT
*
98115020 ATATTATGTATATTTTTTAA
1 ATATTATATATATTTTTTAA
98115040 ATATTATATATATATTTTTTAA
1 ATA-T-TATATATATTTTTTAA
*
98115062 ATATTATATATATATTTTAA
1 ATATTATATATATTTTTTAA
98115082 TATATTATATATATT
1 -ATATTATATATATT
98115097 GTGTACATAC
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
20 18 0.35
21 15 0.29
22 18 0.35
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (20 bp):
ATATTATATATATTTTTTAA
Found at i:98115056 original size:22 final size:22
Alignment explanation
Indices: 98115028--98115095 Score: 113
Period size: 22 Copynumber: 3.1 Consensus size: 22
98115018 TTATATTATG
98115028 TATATTTTTTAAATATTATATA
1 TATATTTTTTAAATATTATATA
98115050 TATATTTTTTAAATATTATATA
1 TATATTTTTTAAATATTATATA
98115072 TATA--TTTTAATATATTATATA
1 TATATTTTTTAA-ATATTATATA
98115093 TAT
1 TAT
98115096 TGTGTACATA
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
20 6 0.13
21 13 0.29
22 26 0.58
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TATATTTTTTAAATATTATATA
Found at i:98115303 original size:23 final size:21
Alignment explanation
Indices: 98115265--98115309 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
98115255 ATACGGATAC
* *
98115265 ATTTTTATATATTATGTATAT
1 ATTTTCATATATTATGAATAT
98115286 ATTTTCATATATGGTATGAATAT
1 ATTTTCATATAT--TATGAATAT
98115309 A
1 A
98115310 GGTTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
23 9 0.45
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.53
Consensus pattern (21 bp):
ATTTTCATATATTATGAATAT
Found at i:98115719 original size:3 final size:3
Alignment explanation
Indices: 98115711--98115831 Score: 72
Period size: 3 Copynumber: 40.7 Consensus size: 3
98115701 AATTTCTCTT
* * *
98115711 TTA TTA TTA TTA CTA -TA TTA TCA TTG TTA TTA TTA TT- TTCCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A TTA
* * * * * *
98115756 TTA TTA ATA CTA ATA TTAA TT- TTC TTA TTA TTA CTA TTA TTA GTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
98115801 TCA -TA GGTA TTA -TA TTA TTA TTA TTA TTA TT
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TT
98115832 GTCTTTTATA
Statistics
Matches: 92, Mismatches: 17, Indels: 18
0.72 0.13 0.14
Matches are distributed among these distances:
2 9 0.10
3 76 0.83
4 5 0.05
5 2 0.02
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:98117677 original size:3 final size:3
Alignment explanation
Indices: 98117669--98117801 Score: 89
Period size: 3 Copynumber: 44.7 Consensus size: 3
98117659 AATTTCACTT
* * *
98117669 TTA TTA TTA TTA CTA -TA TTA TCA TTG TTA TTA TTA TT- TTCCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A TTA
* * * * *
98117714 TTA TTA ATA CTA ATA TTAA TT- TTC TTA TTA -TA TCTA TTA TTA GTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* *
98117759 TCA -TA GGTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
98117802 GTCTTTTATA
Statistics
Matches: 104, Mismatches: 15, Indels: 22
0.74 0.11 0.16
Matches are distributed among these distances:
2 11 0.11
3 83 0.80
4 8 0.08
5 2 0.02
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:98118842 original size:131 final size:131
Alignment explanation
Indices: 98118575--98119009 Score: 459
Period size: 131 Copynumber: 3.3 Consensus size: 131
98118565 TGAATAAGCG
* * * * * * *
98118575 CAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAAC-CTTGAA-CATCGCCTTTGTTTTAA
1 CAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACAC--CAAGTATTGCCTTCGTTTTAA
* * *
98118638 AGGGTTTTCCTA-AAAGACATGAGAGAAAACCTAAAGGAATATTCGATTGTTTTGAGCAAACGAG
64 AGGATTTT--TATAAA-ACACGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAGCAAACGAG
98118702 AAATCA
126 AAATCA
* * * **
98118708 CAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACATCGAGTATTGTCTTCGTTTTGGGA
1 CAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACACCAAGTATTGCCTTCGTTTT-AAA
* *
98118773 GG-TTTTTA-ATAAACACGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACAAGAAA
65 GGATTTTTATA-AAACACGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAGCAAACGAGAAA
98118836 TCA
129 TCA
* * *
98118839 CAACCTAGCACGATAGGGCATGATTCTCGAATTATCAAACACCAAGTATTGCCTTCGTTTTAAAG
1 CAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACACCAAGTATTGCCTTCGTTTTAAAG
* ** * * * *
98118904 GATTTTTATAAAACATGAGTG-AAATTTCGAAGGGATATTTGATTGTTTTGAGCAAACGCGAAAT
66 GATTTTTATAAAACACGAGTGAAAACCT-AAAGGAATATTCGATTGTTTTGAGCAAACGAGAAAT
*
98118968 CG
130 CA
* * * *
98118970 CAACCCAACACGTTAGGGCATTATTCCGCGAATTGCCAAA
1 CAACCCAGCACGATAGGGCATGATTCC-CGAATTGTCAAA
98119010 TATTGAATCT
Statistics
Matches: 253, Mismatches: 41, Indels: 17
0.81 0.13 0.05
Matches are distributed among these distances:
130 7 0.03
131 177 0.70
132 14 0.06
133 52 0.21
134 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (131 bp):
CAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACACCAAGTATTGCCTTCGTTTTAAAG
GATTTTTATAAAACACGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAGCAAACGAGAAATC
A
Found at i:98126997 original size:22 final size:22
Alignment explanation
Indices: 98126930--98126998 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
98126920 AACCATAACC
98126930 AATT-GATGATAAAAAA-TAATT
1 AATTAGATGATAAAAAATTAA-T
* * * * *
98126951 AAATAGTTAGATAAATATTTTAT
1 AATTAGAT-GATAAAAAATTAAT
98126974 AATTAGATGATAAAAAATTAAT
1 AATTAGATGATAAAAAATTAAT
98126996 AAT
1 AAT
98126999 AGTTAAATAA
Statistics
Matches: 35, Mismatches: 10, Indels: 5
0.70 0.20 0.10
Matches are distributed among these distances:
21 3 0.09
22 16 0.46
23 14 0.40
24 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (22 bp):
AATTAGATGATAAAAAATTAAT
Found at i:98128680 original size:30 final size:29
Alignment explanation
Indices: 98128646--98128712 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 29
98128636 TTTTTTTAGA
98128646 ATTAAAATT-AAATTGATATAATT-TATAAAT
1 ATTAAAATTAAAATT-AT-T-ATTATATAAAT
98128676 ATTAAATATTAAAATTATTATTATATAAAT
1 ATTAAA-ATTAAAATTATTATTATATAAAT
*
98128706 TTTAAAA
1 ATTAAAA
98128713 ACTGCCACTA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
29 4 0.12
30 19 0.58
31 5 0.15
32 5 0.15
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (29 bp):
ATTAAAATTAAAATTATTATTATATAAAT
Found at i:98151615 original size:12 final size:12
Alignment explanation
Indices: 98151600--98151660 Score: 68
Period size: 12 Copynumber: 5.1 Consensus size: 12
98151590 CTATTTATCA
98151600 TTATGTTTATTT
1 TTATGTTTATTT
* * *
98151612 TTATCTTTCTCT
1 TTATGTTTATTT
98151624 TTATGTTTATTT
1 TTATGTTTATTT
* **
98151636 TTAGGTCCATTT
1 TTATGTTTATTT
98151648 TTATGTTTATTT
1 TTATGTTTATTT
98151660 T
1 T
98151661 GTTTTCATAT
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (12 bp):
TTATGTTTATTT
Found at i:98156250 original size:63 final size:63
Alignment explanation
Indices: 98156148--98156278 Score: 183
Period size: 63 Copynumber: 2.1 Consensus size: 63
98156138 TTTGAGATAG
* *
98156148 CACACGAGTCAGAGACACGGACGTATGTTCAGGTCGTGTGACTCACTGTTTGCGATTTAGGAC
1 CACACGAGTCAGAGACACGGACGTATGTCCAGGTCGTGTGACTCACTGTTTGCGATTTAAGAC
* * * *
98156211 CACACGAGTCAGAGACACGGATGTGTGTCCAGG-CAGTGTGACTTACTGTTTGTGATTTAAGAC
1 CACACGAGTCAGAGACACGGACGTATGTCCAGGTC-GTGTGACTCACTGTTTGCGATTTAAGAC
*
98156274 TACAC
1 CACAC
98156279 AGGCAGACGA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 1 0.02
63 59 0.98
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (63 bp):
CACACGAGTCAGAGACACGGACGTATGTCCAGGTCGTGTGACTCACTGTTTGCGATTTAAGAC
Found at i:98157374 original size:24 final size:23
Alignment explanation
Indices: 98157338--98157387 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 23
98157328 TATTCGGTTT
98157338 ATTCAAATTATTCAAATTCGAAA
1 ATTCAAATTATTCAAATTCGAAA
* *
98157361 ATTCAACTTGATTCAAATTTGAAA
1 ATTCAAATT-ATTCAAATTCGAAA
98157385 ATT
1 ATT
98157388 GAAAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 8 0.33
24 16 0.67
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (23 bp):
ATTCAAATTATTCAAATTCGAAA
Found at i:98157743 original size:19 final size:20
Alignment explanation
Indices: 98157708--98157746 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
98157698 TATATTCAAT
98157708 GTTTATATATAATTTTTAGA
1 GTTTATATATAATTTTTAGA
98157728 GTTTATATAT-ATTTTTAGA
1 GTTTATATATAATTTTTAGA
98157747 TTATTTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.56
Consensus pattern (20 bp):
GTTTATATATAATTTTTAGA
Found at i:98157755 original size:17 final size:18
Alignment explanation
Indices: 98157710--98157756 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
98157700 TATTCAATGT
98157710 TTATATATAATTTTTAGAG
1 TTATATAT-ATTTTTAGAG
98157729 TTTATATATATTTTTAGA-
1 -TTATATATATTTTTAGAG
*
98157747 TTATTTATAT
1 TTATATATAT
98157757 ACTTTTTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 9 0.35
19 9 0.35
20 8 0.31
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (18 bp):
TTATATATATTTTTAGAG
Found at i:98157755 original size:21 final size:21
Alignment explanation
Indices: 98157709--98157783 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 21
98157699 ATATTCAATG
*
98157709 TTTATATATAATTTTTAGA--G
1 TTTATATAT-ATTTTTAGATTA
98157729 TTTATATATATTTTTAGATTA
1 TTTATATATATTTTTAGATTA
* *
98157750 TTTATATA-CTTTTT-CATTA
1 TTTATATATATTTTTAGATTA
*
98157769 TTTTTATATATTTTT
1 TTTATATATATTTTT
98157784 TAAATTTTCT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
19 20 0.43
20 19 0.40
21 8 0.17
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTATATATATTTTTAGATTA
Found at i:98157790 original size:19 final size:19
Alignment explanation
Indices: 98157729--98157803 Score: 69
Period size: 21 Copynumber: 3.7 Consensus size: 19
98157719 ATTTTTAGAG
*
98157729 TTTATATATATTTTTAGATT
1 TTTATATAT-TTTTTAAATT
* *
98157749 ATTTATATACTTTTTCATTATT
1 -TTTATATA-TTTTTTA-AATT
98157771 TTTATATATTTTTTAAATT
1 TTTATATATTTTTTAAATT
*
98157790 TTCTTTATATTTTT
1 TT-TATATATTTTT
98157804 ATATTTTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
19 5 0.11
20 16 0.35
21 21 0.46
22 4 0.09
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (19 bp):
TTTATATATTTTTTAAATT
Found at i:98157863 original size:21 final size:20
Alignment explanation
Indices: 98157839--98157878 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
98157829 TAAAATTATG
98157839 TATATATATTTCTT-TATTTTT
1 TATATA-ATTT-TTATATTTTT
98157860 TATATAATTTTTATATTTT
1 TATATAATTTTTATATTTT
98157879 AACAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 10 0.56
21 6 0.33
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (20 bp):
TATATAATTTTTATATTTTT
Found at i:98157865 original size:19 final size:18
Alignment explanation
Indices: 98157841--98157888 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
98157831 AAATTATGTA
* *
98157841 TATATATTTCTTTATTTTT
1 TATATAATT-TTTATATTT
98157860 TATATAATTTTTATATTT
1 TATATAATTTTTATATTT
*
98157878 TA-ACAATTTTT
1 TATATAATTTTT
98157889 TAAAGTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 8 0.31
18 10 0.38
19 8 0.31
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (18 bp):
TATATAATTTTTATATTT
Found at i:98160813 original size:23 final size:23
Alignment explanation
Indices: 98160779--98160831 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
98160769 AAAAACTTAA
*
98160779 AAATAAATATTAAAATAAAAAAC
1 AAATAAAAATTAAAATAAAAAAC
* *
98160802 AAATAAAAATTAGACTAAAAAAC
1 AAATAAAAATTAAAATAAAAAAC
98160825 AAA-AAAA
1 AAATAAAA
98160832 GAGCTAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 4 0.15
23 23 0.85
ACGTcount: A:0.75, C:0.06, G:0.02, T:0.17
Consensus pattern (23 bp):
AAATAAAAATTAAAATAAAAAAC
Found at i:98161221 original size:26 final size:24
Alignment explanation
Indices: 98161180--98161239 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
98161170 TTATTTTATT
* * *
98161180 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
98161204 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
98161230 AAATAAATAT
1 AAATAAATAT
98161240 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:98161266 original size:21 final size:22
Alignment explanation
Indices: 98161226--98161268 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
98161216 ATTTAAAAAC
*
98161226 ATAAAAATAAATATTAAAACAA
1 ATAAAAATAAATACTAAAACAA
98161248 ATAAAAA-AAATACTAAAACAA
1 ATAAAAATAAATACTAAAACAA
98161269 TTCTTAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.19
Consensus pattern (22 bp):
ATAAAAATAAATACTAAAACAA
Found at i:98164721 original size:5 final size:6
Alignment explanation
Indices: 98164702--98164742 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
98164692 CGTTAGTGTA
*
98164702 TTTCTT TTTCTT TTTCTT TTTCCCTT TTTCTT TTGCTT TTT
1 TTTCTT TTTCTT TTTCTT TTT--CTT TTTCTT TTTCTT TTT
98164743 TGCTTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 25 0.81
8 6 0.19
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTCTT
Found at i:98164748 original size:20 final size:20
Alignment explanation
Indices: 98164705--98164742 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
98164695 TAGTGTATTT
*
98164705 CTTTTTCTTTTTCTTTTTCC
1 CTTTTTCTTTTGCTTTTTCC
98164725 CTTTTTCTTTTGCTTTTT
1 CTTTTTCTTTTGCTTTTT
98164743 TGCTTTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (20 bp):
CTTTTTCTTTTGCTTTTTCC
Found at i:98165420 original size:25 final size:24
Alignment explanation
Indices: 98165369--98165419 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
98165359 TTGAATATTA
* *
98165369 TTTAATATTTTTTATTTATGTAAT
1 TTTAATAATTTTTATTTATATAAT
98165393 TTTAATTAATTTTTATTT-TATAAT
1 TTTAA-TAATTTTTATTTATATAAT
98165417 TTT
1 TTT
98165420 TTATAACAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (24 bp):
TTTAATAATTTTTATTTATATAAT
Found at i:98166772 original size:63 final size:59
Alignment explanation
Indices: 98166656--98166777 Score: 147
Period size: 63 Copynumber: 2.0 Consensus size: 59
98166646 TTGTACAAAC
* ***
98166656 TATTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTGAATATTTTAATAGTAAAT
1 TATTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGTAATAG-AAAT
*
98166716 TATTTTTATATT-TTGTCCTATTTAATAAAAATAGAAGTTCTTTTGAATAAGGTAATAGAAAT
1 TATTTTTATATTGTT-T-C-ATTTAAT-AAAATAAAAGTTCTTTTGAATAAGGTAATAGAAAT
98166778 AATGCAACAT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
59 2 0.04
60 13 0.25
61 1 0.02
62 11 0.21
63 26 0.49
ACGTcount: A:0.39, C:0.03, G:0.10, T:0.48
Consensus pattern (59 bp):
TATTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGTAATAGAAAT
Found at i:98169223 original size:14 final size:14
Alignment explanation
Indices: 98169182--98169239 Score: 75
Period size: 14 Copynumber: 4.1 Consensus size: 14
98169172 TATTTTTATT
98169182 TAATATGTATA-ATA
1 TAATATGTATATA-A
98169196 TATATATG-ATATAA
1 TA-ATATGTATATAA
98169210 TAATATGTATATAA
1 TAATATGTATATAA
*
98169224 TTATATGTATATAA
1 TAATATGTATATAA
98169238 TA
1 TA
98169240 TAAGTTATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
13 5 0.13
14 28 0.72
15 6 0.15
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (14 bp):
TAATATGTATATAA
Found at i:98169240 original size:25 final size:28
Alignment explanation
Indices: 98169182--98169239 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
98169172 TATTTTTATT
98169182 TAATATGTATAATATATATATGATATAA
1 TAATATGTATAATATATATATGATATAA
98169210 TAATATGTAT-ATA-ATTATATGTATATAA
1 TAATATGTATAATATA-TATATG-ATATAA
98169238 TA
1 TA
98169240 TAAGTTATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 1 0.04
27 9 0.32
28 18 0.64
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (28 bp):
TAATATGTATAATATATATATGATATAA
Found at i:98190364 original size:43 final size:43
Alignment explanation
Indices: 98190317--98190447 Score: 199
Period size: 43 Copynumber: 3.0 Consensus size: 43
98190307 GTAATTCTAT
* * *
98190317 ATCGAAGCCTATGTCCCAGACAGGGTCTTACACGAAATCACAG
1 ATCGAGGCCTGTGTCCCAAACAGGGTCTTACACGAAATCACAG
*
98190360 ATCGAGGCCTGTGTCCCAAACAGGGTCTTACAAGAAATCACAG
1 ATCGAGGCCTGTGTCCCAAACAGGGTCTTACACGAAATCACAG
* * *
98190403 ATCGAGGCCTGTGTCCCAAAAACGGTCTTACACGATATCACAG
1 ATCGAGGCCTGTGTCCCAAACAGGGTCTTACACGAAATCACAG
98190446 AT
1 AT
98190448 TAATGTCAAC
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 80 1.00
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (43 bp):
ATCGAGGCCTGTGTCCCAAACAGGGTCTTACACGAAATCACAG
Found at i:98203847 original size:18 final size:18
Alignment explanation
Indices: 98203824--98203873 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
98203814 GAGCATTGGG
98203824 ATTTTATAATGTAAAGAA
1 ATTTTATAATGTAAAGAA
98203842 ATTTTATAATGTAAAGAA
1 ATTTTATAATGTAAAGAA
98203860 ATTTTATAATGTAA
1 ATTTTATAATGTAA
98203874 TCATTAATGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (18 bp):
ATTTTATAATGTAAAGAA
Found at i:98204337 original size:35 final size:38
Alignment explanation
Indices: 98204268--98204338 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
98204258 TAAATATAAA
* * *
98204268 AATAATTATATTAAGAATGTTATTAAGTTATATTTAAT
1 AATAATTATATTAAGAATATGATTAAGATATATTTAAT
98204306 AATAATTATATTAA-AATATGATTAA-AT-TATTTA
1 AATAATTATATTAAGAATATGATTAAGATATATTTA
98204339 TTTTTATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
35 6 0.20
36 1 0.03
37 9 0.30
38 14 0.47
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (38 bp):
AATAATTATATTAAGAATATGATTAAGATATATTTAAT
Found at i:98204562 original size:46 final size:44
Alignment explanation
Indices: 98204477--98204568 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 44
98204467 ATATCTATTC
**
98204477 CATTCAACCAAACACAATAATACTATTACAGTTCTATTCCATTA
1 CATTCAACCAAACACAATAATACTATTACAGGCCTATTCCATTA
* *
98204521 CATTCAACCAAACA-ATTGAATTATTGATTACAGGCCTATTCCATTA
1 CATTCAACCAAACACAAT-AA-TACT-ATTACAGGCCTATTCCATTA
98204567 CA
1 CA
98204569 GCTCTATTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 2 0.05
44 16 0.39
45 3 0.07
46 20 0.49
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAATAATACTATTACAGGCCTATTCCATTA
Found at i:98204568 original size:16 final size:16
Alignment explanation
Indices: 98204547--98204597 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
98204537 TGAATTATTG
98204547 ATTACAGGCCTATTCC
1 ATTACAGGCCTATTCC
98204563 ATTACA-GCTCTATTCC
1 ATTACAGGC-CTATTCC
*
98204579 ATTACAGCCCTATTCC
1 ATTACAGGCCTATTCC
98204595 ATT
1 ATT
98204598 CCAATGAACC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
15 2 0.06
16 29 0.91
17 1 0.03
ACGTcount: A:0.25, C:0.31, G:0.08, T:0.35
Consensus pattern (16 bp):
ATTACAGGCCTATTCC
Found at i:98211228 original size:20 final size:21
Alignment explanation
Indices: 98211194--98211245 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
98211184 TGATGATATT
*
98211194 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
98211215 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
98211235 TTTTATTATTT
1 TTATATTATTT
98211246 CATTATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 4 0.15
20 14 0.52
21 9 0.33
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:98211253 original size:11 final size:11
Alignment explanation
Indices: 98211237--98211267 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
98211227 ATGAGATATT
98211237 TTATTATTTCA
1 TTATTATTTCA
98211248 TTATTATTTCA
1 TTATTATTTCA
98211259 TTATTATTT
1 TTATTATTT
98211268 TATTCTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (11 bp):
TTATTATTTCA
Found at i:98213401 original size:46 final size:46
Alignment explanation
Indices: 98213349--98213530 Score: 231
Period size: 46 Copynumber: 4.0 Consensus size: 46
98213339 AGTGTGCTCT
*
98213349 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
98213395 CTGATATGAAATGTGTAAGACCATGGTTGAAGGATATCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** *
98213441 GTGATATGAAATGAACAAGATCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
98213487 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
98213531 TCATGTCAAA
Statistics
Matches: 118, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
45 1 0.01
46 117 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:98215329 original size:30 final size:30
Alignment explanation
Indices: 98215295--98215357 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
98215285 ACTTAAGAAG
98215295 CAAATG-CTTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTT-TAAAATAATAAAAAAATTAA
*
98215325 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
98215355 CAA
1 CAA
98215358 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.90
31 3 0.10
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAAAAAATTAA
Found at i:98218248 original size:47 final size:48
Alignment explanation
Indices: 98218131--98218262 Score: 176
Period size: 47 Copynumber: 2.8 Consensus size: 48
98218121 GTGAGAGTGA
* * * *
98218131 TACCTTGATTTGGCTACCGGCCATGGCATAGGTATTTCGGGGAGGAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTTCGGGGAGAAGT
* *
98218179 TACCTTGATTTGGCTACAGGCCACGGTATAGGTACTTC-GGGATAAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTTCGGGGAGAAGT
* **
98218226 TACCTTGAGTTGGCTATGGGCCATGGTATAGGTACTT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTT
98218263 ATCGGATAAG
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 40 0.54
48 34 0.46
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.31
Consensus pattern (48 bp):
TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTTCGGGGAGAAGT
Found at i:98219977 original size:20 final size:22
Alignment explanation
Indices: 98219952--98219991 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
98219942 TGGCATGCAT
*
98219952 GATATT-AAA-TTTGATTTTAG
1 GATATTGAAACTTGGATTTTAG
98219972 GATATTGAAACTTGGATTTT
1 GATATTGAAACTTGGATTTT
98219992 GAATTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 3 0.18
22 8 0.47
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (22 bp):
GATATTGAAACTTGGATTTTAG
Found at i:98220546 original size:63 final size:64
Alignment explanation
Indices: 98220430--98220565 Score: 179
Period size: 63 Copynumber: 2.2 Consensus size: 64
98220420 TTAACTGCTC
**
98220430 AATTTGTA-TTAGATAATGCAATTATTTAAGTTTATATTTTTATCAAATTAATATTTAAATACT
1 AATTTGTATTTAGATAATGCAATTATTTAACATTATATTTTTATCAAATTAATATTTAAATACT
* * * *
98220493 AATTTATATTTAGATATTGTAATTATTTAACATTAT-TTTTT-TCCAAATTAATATTTAGATACT
1 AATTTGTATTTAGATAATGCAATTATTTAACATTATATTTTTAT-CAAATTAATATTTAAATACT
*
98220556 AGTTTGTATT
1 AATTTGTATT
98220566 AATTTACTAA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
62 1 0.02
63 39 0.62
64 23 0.37
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (64 bp):
AATTTGTATTTAGATAATGCAATTATTTAACATTATATTTTTATCAAATTAATATTTAAATACT
Found at i:98220692 original size:29 final size:30
Alignment explanation
Indices: 98220660--98220717 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
98220650 TTGATTTAAT
* *
98220660 GTGCAATTGTATACATG-AACTTTAATTTG
1 GTGCAATTATACACATGAAACTTTAATTTG
*
98220689 GTGCAATTATACACGTGAAACTTTAATTT
1 GTGCAATTATACACATGAAACTTTAATTT
98220718 CTATTTAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.40
Consensus pattern (30 bp):
GTGCAATTATACACATGAAACTTTAATTTG
Found at i:98220829 original size:23 final size:23
Alignment explanation
Indices: 98220780--98220829 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
98220770 TTGGATAAAT
**
98220780 ATAATTATTTATGTATGCAATTT
1 ATAATTATTTATGTATGCAATAA
*
98220803 ATAATTATTTATGTATGTAATAA
1 ATAATTATTTATGTATGCAATAA
98220826 ATAA
1 ATAA
98220830 ATATAAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (23 bp):
ATAATTATTTATGTATGCAATAA
Found at i:98223860 original size:21 final size:21
Alignment explanation
Indices: 98223836--98223875 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
98223826 CATTTTAAAA
98223836 TTATGTATATATATATTTTCT
1 TTATGTATATATATATTTTCT
* *
98223857 TTATTTTTATATATATTTT
1 TTATGTATATATATATTTT
98223876 TACATTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (21 bp):
TTATGTATATATATATTTTCT
Done.