Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 300 of 343
Found at i:98223885 original size:21 final size:21
Alignment explanation
Indices: 98223843--98223884 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
98223833 AAATTATGTA
**
98223843 TATATATATTTTCTTTATTTT
1 TATATATATTTTCTACATTTT
98223864 TATATATATTTT-TACATTTT
1 TATATATATTTTCTACATTTT
98223884 T
1 T
98223885 TTAAAGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (21 bp):
TATATATATTTTCTACATTTT
Found at i:98224989 original size:21 final size:22
Alignment explanation
Indices: 98224947--98224989 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
98224937 TAAACGAAGT
* *
98224947 ACAATATTATTTAACTACATAA
1 ACAATATAATTTAACTAAATAA
98224969 ACAATATAATTT-ACTAAATAA
1 ACAATATAATTTAACTAAATAA
98224990 TTACATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
ACAATATAATTTAACTAAATAA
Found at i:98228539 original size:61 final size:58
Alignment explanation
Indices: 98228435--98228546 Score: 152
Period size: 61 Copynumber: 1.9 Consensus size: 58
98228425 ATAATATATA
* **
98228435 TAATATAATATATGCATGACTTAAATGAAGCTAAATGGAATATATATGCATAATGCAT
1 TAATATAATATATGCATGACTTAAATGAAGCAAAACAGAATATATATGCATAATGCAT
**
98228493 TAATATATATATATGCGCATGACTTAAATGAAGCAAAACATTATATATATGCAT
1 TAATATA-ATATAT--GCATGACTTAAATGAAGCAAAACAGAATATATATGCAT
98228547 TAATATTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
58 7 0.15
59 6 0.13
61 33 0.72
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (58 bp):
TAATATAATATATGCATGACTTAAATGAAGCAAAACAGAATATATATGCATAATGCAT
Found at i:98228556 original size:36 final size:36
Alignment explanation
Indices: 98228516--98228588 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
98228506 TGCGCATGAC
* *
98228516 TTAAATGAAGCAAAACATTATATATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
*
98228552 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
98228588 T
1 T
98228589 ATATATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (36 bp):
TTAAATGAAGCAAAACAGTATACATATGCATTAATA
Found at i:98228657 original size:45 final size:45
Alignment explanation
Indices: 98228594--98228684 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
98228584 AATATATATA
* ** *
98228594 TATATATATGCTTAACTTAAATGAAGTTAAACCTGGTAATAATGG
1 TATATATATGCATAACTTAAATGAAACTAAACCTGCTAATAATGG
*
98228639 TATATATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGG
1 TATATATATGCATAACTTAAATGAAACTAAACCTGCTAATAATGG
98228684 T
1 T
98228685 TAATTTAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (45 bp):
TATATATATGCATAACTTAAATGAAACTAAACCTGCTAATAATGG
Found at i:98228783 original size:16 final size:16
Alignment explanation
Indices: 98228762--98228793 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
98228752 ACAAGACAGA
*
98228762 CAGAAACATGGAAACT
1 CAGAAACATAGAAACT
98228778 CAGAAACATAGAAACT
1 CAGAAACATAGAAACT
98228794 TTGATTAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.19, G:0.16, T:0.12
Consensus pattern (16 bp):
CAGAAACATAGAAACT
Found at i:98229203 original size:21 final size:22
Alignment explanation
Indices: 98229152--98229204 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
98229142 ACAACTGACG
98229152 GTGGTTGTGGCTTGTGGAACCT
1 GTGGTTGTGGCTTGTGGAACCT
*
98229174 -TGTTTGTGGCTTGTGGAA-CT
1 GTGGTTGTGGCTTGTGGAACCT
*
98229194 GTGGTCGTGGC
1 GTGGTTGTGGC
98229205 CTCGTGGGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.07
21 25 0.93
ACGTcount: A:0.08, C:0.13, G:0.42, T:0.38
Consensus pattern (22 bp):
GTGGTTGTGGCTTGTGGAACCT
Found at i:98230757 original size:27 final size:26
Alignment explanation
Indices: 98230727--98230789 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
98230717 GGATAATTAA
98230727 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
98230754 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
98230781 AATATAAAT
1 AATA-AAAT
98230790 AAAATAGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:98230776 original size:15 final size:15
Alignment explanation
Indices: 98230756--98230785 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
98230746 ATAATCCTAA
*
98230756 TAATTATCTTAATAT
1 TAATTATCCTAATAT
98230771 TAATTATCCTAATAT
1 TAATTATCCTAATAT
98230786 AAATAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:98231365 original size:9 final size:9
Alignment explanation
Indices: 98231351--98231386 Score: 63
Period size: 9 Copynumber: 3.9 Consensus size: 9
98231341 ATTAATATGA
98231351 CTTTTTTTT
1 CTTTTTTTT
98231360 CTTTTTTTT
1 CTTTTTTTT
98231369 CTTTTTTTTT
1 C-TTTTTTTT
98231379 CTTTTTTT
1 CTTTTTTT
98231387 ATAGAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 17 0.65
10 9 0.35
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:98231367 original size:10 final size:10
Alignment explanation
Indices: 98231352--98231386 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
98231342 TTAATATGAC
98231352 TTTTTTTTC-
1 TTTTTTTTCT
98231361 TTTTTTTTCT
1 TTTTTTTTCT
98231371 TTTTTTTTCT
1 TTTTTTTTCT
98231381 TTTTTT
1 TTTTTT
98231387 ATAGAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:98232398 original size:8 final size:8
Alignment explanation
Indices: 98232378--98232413 Score: 51
Period size: 7 Copynumber: 4.9 Consensus size: 8
98232368 ATATCTGAAA
98232378 ATAATAA-
1 ATAATAAT
98232385 ATAATAAT
1 ATAATAAT
98232393 ATAATAAT
1 ATAATAAT
98232401 ATAA-AAT
1 ATAATAAT
98232408 A-AATAA
1 ATAATAA
98232414 AAATAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 2 0.07
7 13 0.48
8 12 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
ATAATAAT
Found at i:98236117 original size:19 final size:19
Alignment explanation
Indices: 98236093--98236133 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
98236083 TAATTTAACT
98236093 TACATTCTAA-AAAGATAAA
1 TACATT-TAATAAAGATAAA
98236112 TACATTTAATTAAAGATAAA
1 TACATTTAA-TAAAGATAAA
98236132 TA
1 TA
98236134 AGGATAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 3 0.15
19 6 0.30
20 11 0.55
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.32
Consensus pattern (19 bp):
TACATTTAATAAAGATAAA
Found at i:98236175 original size:27 final size:26
Alignment explanation
Indices: 98236145--98236207 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
98236135 GGATAATTAA
98236145 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
98236172 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
98236199 AATATAAAT
1 AATA-AAAT
98236208 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:98236194 original size:15 final size:15
Alignment explanation
Indices: 98236174--98236203 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
98236164 ATAATCCTAA
*
98236174 TAATTATCTTAATAT
1 TAATTATCCTAATAT
98236189 TAATTATCCTAATAT
1 TAATTATCCTAATAT
98236204 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:98244536 original size:13 final size:13
Alignment explanation
Indices: 98244518--98244545 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
98244508 GTCGTTTGTG
98244518 TTTTTCTTTTTCT
1 TTTTTCTTTTTCT
98244531 TTTTTCTTTTTCT
1 TTTTTCTTTTTCT
98244544 TT
1 TT
98244546 ATGGCATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTTCTTTTTCT
Found at i:98245851 original size:30 final size:31
Alignment explanation
Indices: 98245815--98245883 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
98245805 TGATTTCAAT
98245815 TCAGTCACTCAAC-TT-TCAAAAAATAACAAA
1 TCAGTCACT-AACATTATCAAAAAATAACAAA
*
98245845 TCAGTCACTAACATTATCAAAAAGTAACAAA
1 TCAGTCACTAACATTATCAAAAAATAACAAA
98245876 TCAGTCAC
1 TCAGTCAC
98245884 CCATTAACAC
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
29 3 0.08
30 11 0.31
31 22 0.61
ACGTcount: A:0.48, C:0.23, G:0.06, T:0.23
Consensus pattern (31 bp):
TCAGTCACTAACATTATCAAAAAATAACAAA
Found at i:98246088 original size:38 final size:38
Alignment explanation
Indices: 98246033--98246105 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
98246023 GTCACTAGCA
98246033 TTATCGAAAAATGACAAATCAGTCACCCATTAACATCG
1 TTATCGAAAAATGACAAATCAGTCACCCATTAACATCG
* *
98246071 TTATC-AAAAACTTACAAATCAGTCACTCATTAACA
1 TTATCGAAAAA-TGACAAATCAGTCACCCATTAACA
98246106 ATTTCCGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 5 0.16
38 27 0.84
ACGTcount: A:0.44, C:0.23, G:0.07, T:0.26
Consensus pattern (38 bp):
TTATCGAAAAATGACAAATCAGTCACCCATTAACATCG
Found at i:98248242 original size:25 final size:26
Alignment explanation
Indices: 98248191--98248242 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
98248181 CTTAACACTC
98248191 TGCATATTAAATTTACAAAAAAACTT
1 TGCATATTAAATTTACAAAAAAACTT
98248217 TGCATATTAAATTTAC-AAAAAACTT
1 TGCATATTAAATTTACAAAAAAACTT
98248242 T
1 T
98248243 CTCAATGTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.48, C:0.12, G:0.04, T:0.37
Consensus pattern (26 bp):
TGCATATTAAATTTACAAAAAAACTT
Found at i:98252088 original size:22 final size:21
Alignment explanation
Indices: 98252053--98252128 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
98252043 AAACGGTATC
* *
98252053 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
98252074 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
98252097 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
98252116 TGC-AATCATATCT
1 TACAAATCATATCT
98252129 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:98252113 original size:19 final size:19
Alignment explanation
Indices: 98252089--98252179 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
98252079 AATCATATCT
98252089 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98252108 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
98252126 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
* *
98252143 TATAATATTGCATATCATA
1 TCTAAGATTGCATATCATA
98252162 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
98252180 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 14 0.22
18 16 0.25
19 35 0.54
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:98252598 original size:45 final size:45
Alignment explanation
Indices: 98252530--98252666 Score: 172
Period size: 45 Copynumber: 3.1 Consensus size: 45
98252520 GGAAGGTGAT
*
98252530 ATCTGCTATCTTTGATCTACTCCCCGTCTAATATAGAGACGCCAA
1 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAA
* * *
98252575 ATCTGTTATCTTTGATTTGCTCCCCGTCTAATATAGAGACACCAA
1 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAA
** * *
98252620 ATCTGCT-TCTTCAATCTGC-CCTC-TGATAATATAGAGACGCCAA
1 ATCTGCTATCTTTGATCTGCTCCCCGT-CTAATATAGAGACGCCAA
98252663 ATCT
1 ATCT
98252667 TCTTAGATCT
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.01
43 23 0.29
44 9 0.11
45 47 0.59
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (45 bp):
ATCTGCTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAA
Found at i:98253050 original size:175 final size:174
Alignment explanation
Indices: 98252694--98253176 Score: 647
Period size: 175 Copynumber: 2.8 Consensus size: 174
98252684 CGTAAACACG
* * * * *
98252694 TGAAAGCCAAATCTGCTGTGTCTTTGATTTGCTCCTTGTGAACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGATATGTCTTCGATTTG-TCCTTGTAAACACAAGAATGCCAAATCATCTTG
* *
98252759 GATCTGCTTCAGTA-AAATCATCTG-AGGTTAGATCTACTATGTATCTACTCTCCCTTGAAATGG
65 GATCTGCTTCAGTATAAA-CATCTGAAGGTTAGATCTACTATGTATCTACTCTCCGTCGAAATGG
*
98252822 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
129 AGATGCCAGATCTGTTATATTGGATCTGCTTTGGTGTGAGAACATC
* *
98252868 CGAAAGTCAAATCTGATATGTCTTCGATTTGTTCCTTTTAAACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGATATGTCTTCGATTTG-TCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * * * *
98252933 GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATAGA
65 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTACTCTCCGTCGAAATGGA
* *
98252998 GATGTCAGGTCTGTTATATTGGATCTGCTTTGGTGTGAGAACATC
130 GATGCCAGATCTGTTATATTGGATCTGCTTTGGTGTGAGAACATC
* * * * * * *
98253043 TGAAAGTCAAATATGTTATTTCTTCTATTTGTCAGTTGTAAACAAAAGAATGCCAAACCATCTTG
1 TGAAAGTCAAATCTGATATGTCTTCGATTTGTC-CTTGTAAACACAAGAATGCCAAATCATCTTG
* *
98253108 GATCTGCTTCAG--T---CATCTGAAGGTTAGATCTACTATGTATCTACTTTCTGTCGAAATGGA
65 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTACTCTCCGTCGAAATGGA
98253168 GATGCCAGA
130 GATGCCAGA
98253177 CTTCAATTTG
Statistics
Matches: 270, Mismatches: 36, Indels: 10
0.85 0.11 0.03
Matches are distributed among these distances:
170 47 0.17
173 1 0.00
174 79 0.29
175 143 0.53
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (174 bp):
TGAAAGTCAAATCTGATATGTCTTCGATTTGTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTACTCTCCGTCGAAATGGAG
ATGCCAGATCTGTTATATTGGATCTGCTTTGGTGTGAGAACATC
Found at i:98254005 original size:200 final size:202
Alignment explanation
Indices: 98253662--98254113 Score: 773
Period size: 200 Copynumber: 2.2 Consensus size: 202
98253652 AAATCTGTTT
*
98253662 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
98253727 GCGAAAACCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
98253792 GGATCTGCTTCAG-T-CACCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGA
131 GGATCTGCTTCAGATACACCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAAA
98253855 TGCCAGA
196 TGCCAGA
*
98253862 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* **
98253927 GTGAAAGTCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
98253992 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGG
131 GGATCTGCTTCAG-AT--ACACCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGG
98254057 AAATGCCAGA
193 AAATGCCAGA
98254067 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAT
98254114 ATGCCAAATC
Statistics
Matches: 237, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
200 136 0.57
202 1 0.00
205 100 0.42
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (202 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GCGAAAACCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGATACACCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAAA
TGCCAGA
Found at i:98254119 original size:19 final size:19
Alignment explanation
Indices: 98254095--98254132 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
98254085 CAATACAGAG
98254095 ATGCCAAATCATCTTAGAT
1 ATGCCAAATCATCTTAGAT
98254114 ATGCCAAATCATCTTAGAT
1 ATGCCAAATCATCTTAGAT
98254133 CTGCTTCAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (19 bp):
ATGCCAAATCATCTTAGAT
Found at i:98254402 original size:685 final size:684
Alignment explanation
Indices: 98253078--98254798 Score: 3037
Period size: 685 Copynumber: 2.5 Consensus size: 684
98253068 TATTTGTCAG
* * * *
98253078 TTGTAAACAAAAGAATGCCAAACCATCTTGGATCTGCTTCAGTCATCTGAAGGTTAGATCTACTA
1 TTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTCATCTGAAGGTTAGATCTGCTA
* * * *
98253143 TGTATCTACTTTCTGTCGAAATGGAGATGCCAGACTTCAATTTGTTATCTGACAATACAGAGATG
66 TGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTC-ATTTGTTCTCTGACAATACAGAGATG
* *
98253208 CCAAATCATCTTAGATTTTCTTCATCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCAATTT
130 CCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTT
* * *
98253273 GTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATATGCTTCAGTATAAACATCTGAAAGTT
195 ATTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTT
* * * *
98253338 AGATCTGCTATGTATTTGCTCTCCGTCGAAATGGAGATTCCAGACTTCGATTTGTTCTCTGGCAA
260 AGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGATTTGTTCTCTGACAA
* *
98253403 TACAGAGATGCCAAATCATCTTAGATATGCCAAATCATCTTAAATCTGCTTCAGCGTTAACATGT
325 TACAGAGATGCCAAATCATCTTAGATATGCCAAATCATCTTAAATCTGCTTCAGCGTAAACAAGT
* * * *
98253468 GGAAGCCAAATCTGTTGTGTCTTCAATTTGCTCTTTGTGAGCACAAGGATGTCAAATCATCTCGG
390 GAAAGCCAAATCTGTTGTGTCTTCAATTTACTCCTTGTGAGCACAAGGATGCCAAATCATCTCGG
98253533 ATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATATCTTTAATCTACTTCTTGTAAACT
455 ATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATATCTTTAATCTACTTCTTGTAAACT
*
98253598 TATGACTGTCCTATTGATATCTTCGATCTACTCTCCGCCGAATACAGAGACGCCAAATCTGTTTC
520 TATGACTGTCCTATTGATATCTTCGATCTACTCTCCGCCGAATACAGAGACACCAAATCTGTTTC
98253663 TTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
585 TTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
* *
98253728 CGAAAACCAAATCAGCTATGTCTTTGATTTGTTCC
650 CGAAAACCAAATCAACTATGTCTTCGATTTGTTCC
*
98253763 TTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTCACCTGAAGGTTAGATCTGCTA
1 TTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTCATCTGAAGGTTAGATCTGCTA
98253828 TGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATG
66 TGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTC-ATTTGTTCTCTGACAATACAGAGATG
*
98253893 CCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGTCAAATCAGCTATGTCTTCGATTT
130 CCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTT
98253958 ATTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTT
195 ATTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTT
*
98254023 AGATCTGCTATGTATCTACTCTCCGTCGAAATGGAAATGCCAGACTTCGATTTGTTCTCTGACAA
260 AGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGATTTGTTCTCTGACAA
*
98254088 TACAGAGATGCCAAATCATCTTAGATATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACAAGT
325 TACAGAGATGCCAAATCATCTTAGATATGCCAAATCATCTTAAATCTGCTTCAGCGTAAACAAGT
* *
98254153 GAAAGCCAAATCTGTTGTGTCTTCAATTTACTCCTTGTGAGCACAAGGATGCCAAATCGTCTTGG
390 GAAAGCCAAATCTGTTGTGTCTTCAATTTACTCCTTGTGAGCACAAGGATGCCAAATCATCTCGG
*
98254218 ATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTACTTCTTGTAAACT
455 ATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATATCTTTAATCTACTTCTTGTAAACT
* * * *
98254283 TATGACTGTCCTGTTGATATCTTCGATCTGCTCTTCGCTGAATACAGAGACACCAAATCTGTTTC
520 TATGACTGTCCTATTGATATCTTCGATCTACTCTCCGCCGAATACAGAGACACCAAATCTGTTTC
*
98254348 TTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATTTTAGATTTGCTTCAGCGTAAGCACG
585 TTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
*
98254413 CGAAAATCAAATCAACTATGTCTTCGATTTGTTCC
650 CGAAAACCAAATCAACTATGTCTTCGATTTGTTCC
98254448 TTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTCATCTGAAGGTTAGATCTGCTA
1 TTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTCATCTGAAGGTTAGATCTGCTA
*
98254513 TGTATCTGCTCTCCGTCGAAATGGAAATGCCAGACTTCATTTTGTTCTCTGACAATACAGAGATG
66 TGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCA-TTTGTTCTCTGACAATACAGAGATG
98254578 CCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTT
130 CCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTT
*
98254643 ATTCCTTGTAAGCACAAGGATGCCAAACCATCTTAGATCTGCTTCAGTATAAACATCTGAAGGTT
195 ATTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTT
98254708 AGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGATTTGTTCTCTGACAA
260 AGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGATTTGTTCTCTGACAA
*
98254773 TACAGAAATGCCAAATCATCTTAGAT
325 TACAGAGATGCCAAATCATCTTAGAT
98254799 TTGCTTCATC
Statistics
Matches: 989, Mismatches: 46, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
684 1 0.00
685 988 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (684 bp):
TTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTCATCTGAAGGTTAGATCTGCTA
TGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCATTTGTTCTCTGACAATACAGAGATGC
CAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTA
TTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTA
GATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGATTTGTTCTCTGACAAT
ACAGAGATGCCAAATCATCTTAGATATGCCAAATCATCTTAAATCTGCTTCAGCGTAAACAAGTG
AAAGCCAAATCTGTTGTGTCTTCAATTTACTCCTTGTGAGCACAAGGATGCCAAATCATCTCGGA
TCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATATCTTTAATCTACTTCTTGTAAACTT
ATGACTGTCCTATTGATATCTTCGATCTACTCTCCGCCGAATACAGAGACACCAAATCTGTTTCT
TCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGC
GAAAACCAAATCAACTATGTCTTCGATTTGTTCC
Found at i:98254792 original size:205 final size:200
Alignment explanation
Indices: 98254347--98254830 Score: 799
Period size: 200 Copynumber: 2.4 Consensus size: 200
98254337 AAATCTGTTT
* * *
98254347 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATTTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* ** *
98254412 GCGAAAATCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAACTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
98254477 GGATCTGCTTCAGTCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAAATG
131 AGATCTGCTTCAGTCATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAAATG
98254542 CCAGA
196 CCAGA
98254547 CTTC-ATTTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCA
1 CTTCGA-TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCA
*
98254611 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCT
65 CGTGAAAGCCAAATCAACTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCT
98254676 TAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATG
130 TAGATCTGCTTCAG--T---CATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATG
*
98254741 GAGATGCCAGA
190 GAAATGCCAGA
*
98254752 CTTCGATTTGTTCTCTGACAATACAGAAATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
98254817 GTGAAAGCCAAATC
66 GTGAAAGCCAAATC
98254831 TTTTTAGGTG
Statistics
Matches: 265, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
199 1 0.00
200 132 0.50
202 1 0.00
205 130 0.49
206 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (200 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAACTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
AGATCTGCTTCAGTCATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAAATG
CCAGA
Found at i:98256197 original size:22 final size:21
Alignment explanation
Indices: 98256162--98256291 Score: 68
Period size: 19 Copynumber: 6.7 Consensus size: 21
98256152 AAAAGGTATC
* *
98256162 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
98256183 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
98256206 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
98256225 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
**
98256243 T--GTATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
98256260 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
98256279 TGC-AATCATATCT
1 TACAAATCATATCT
98256292 AAGATTGTAT
Statistics
Matches: 94, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
17 15 0.16
18 21 0.22
19 29 0.31
20 1 0.01
21 3 0.03
22 15 0.16
23 10 0.11
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:98256205 original size:23 final size:22
Alignment explanation
Indices: 98256162--98256219 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
98256152 AAAAGGTATC
* *
98256162 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
98256183 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
98256206 TGCATATCATATCT
1 TACAAATCATATCT
98256220 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:98256222 original size:19 final size:19
Alignment explanation
Indices: 98256198--98256342 Score: 230
Period size: 19 Copynumber: 7.9 Consensus size: 19
98256188 AATCATATCT
98256198 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98256217 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
98256235 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
98256252 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98256271 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
98256289 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
98256306 TATAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
98256325 TCTAAGATTACATATCAT
1 TCTAAGATTGCATATCAT
98256343 TGAAGATTAT
Statistics
Matches: 117, Mismatches: 3, Indels: 12
0.89 0.02 0.09
Matches are distributed among these distances:
17 31 0.26
18 32 0.27
19 54 0.46
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:98256266 original size:54 final size:54
Alignment explanation
Indices: 98256198--98256342 Score: 263
Period size: 54 Copynumber: 2.7 Consensus size: 54
98256188 AATCATATCT
98256198 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
98256252 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
* *
98256306 TATAAGATTGCATATCATATCTAAGATTACATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCAT
98256343 TGAAGATTAT
Statistics
Matches: 88, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
54 83 0.94
55 5 0.06
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:98256267 original size:14 final size:15
Alignment explanation
Indices: 98256212--98256321 Score: 78
Period size: 17 Copynumber: 6.5 Consensus size: 15
98256202 AGATTGCATA
98256212 TCATATCTAAGATTG
1 TCATATCTAAGATTG
98256227 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
98256245 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
98256262 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
98256281 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
*
98256299 TATCATATATAAGATTG
1 --TCATATCTAAGATTG
98256316 -CATATC
1 TCATATC
98256322 ATATCTAAGA
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
14 5 0.06
17 31 0.37
18 31 0.37
19 17 0.20
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:98256279 original size:73 final size:71
Alignment explanation
Indices: 98256191--98256343 Score: 229
Period size: 73 Copynumber: 2.1 Consensus size: 71
98256181 ATTACAAAAT
*
98256191 CATATC-TTCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTG-TATCATATC
1 CATATCATTCTAAGATTGCA-ATCATATCTAAGATTG-AATCATATATAAGATTGATATCATATC
*
98256254 TAAGATTG
64 TAAGATTA
*
98256262 CATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATATAAGATTGCATATCATATC
1 CATATCAT-TCTAAGATTGCAATCATATCTAAGATTGAATCATATATAAGATTG-ATATCATATC
98256327 TAAGATTA
64 TAAGATTA
98256335 CATATCATT
1 CATATCATT
98256344 GAAGATTATA
Statistics
Matches: 75, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
71 21 0.28
72 18 0.24
73 36 0.48
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (71 bp):
CATATCATTCTAAGATTGCAATCATATCTAAGATTGAATCATATATAAGATTGATATCATATCTA
AGATTA
Found at i:98256749 original size:45 final size:45
Alignment explanation
Indices: 98256698--98256785 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
98256688 CGATATCTAC
98256698 TATCTTTGATCTACTCCCCGTCTAATATAGAGACGCCAAATCTGT
1 TATCTTTGATCTACTCCCCGTCTAATATAGAGACGCCAAATCTGT
* *
98256743 TATCTTTGATTTGCTCCCCGTCTAATATAGAGACGCCAAATCT
1 TATCTTTGATCTACTCCCCGTCTAATATAGAGACGCCAAATCT
98256786 CCTTCTTCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (45 bp):
TATCTTTGATCTACTCCCCGTCTAATATAGAGACGCCAAATCTGT
Found at i:98257176 original size:175 final size:174
Alignment explanation
Indices: 98256857--98257339 Score: 663
Period size: 175 Copynumber: 2.8 Consensus size: 174
98256847 ATAAGCACGT
* * * *
98256857 GAAAGCCAAATCTACTGTGTCTTCAATTTGCTCCTTGTGAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCAATTTG-TCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * * *
98256922 ATCTGCTTCAGTA-AAATCATCTGAAGGGTAGATCTGCTATGTATCTGCTCCCCCTTGAAATGGA
65 ATCTGCTTCAGTATAAA-CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGA
*
98256986 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
129 GATGCCAGATCTGTTATATTGGATCTGCTTTGGTGTGAGAACATCC
* *
98257032 GAAAGTCAAATCTGCTATGTCTGCTATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCAATTTG-TCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * * *
98257097 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCTGTCGAAATAGAG
65 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
* * *
98257162 ATGTCAGGTCTGTTATATTGGATCTGCTTTGGTGTGAGAACATCT
130 ATGCCAGATCTGTTATATTGGATCTGCTTTGGTGTGAGAACATCC
* * * * * * *
98257207 AAAAGTCAAATCTGCTATTTCTTCGATTTGTCAGTTGTAAACACAAGAATGCCAGACCATTTTGG
1 GAAAGTCAAATCTGCTATGTCTTCAATTTGTC-CTTGTAAACACAAGAATGCCAAATCATCTTGG
98257272 ATCTGCTTCA--AT---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
65 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
98257332 ATGCCAGA
130 ATGCCAGA
98257340 CTTCAATTTG
Statistics
Matches: 273, Mismatches: 33, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
170 50 0.18
173 2 0.01
174 2 0.01
175 216 0.79
176 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (174 bp):
GAAAGTCAAATCTGCTATGTCTTCAATTTGTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
TCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGA
TGCCAGATCTGTTATATTGGATCTGCTTTGGTGTGAGAACATCC
Found at i:98257573 original size:205 final size:210
Alignment explanation
Indices: 98257208--98257737 Score: 647
Period size: 224 Copynumber: 2.5 Consensus size: 210
98257198 AGAACATCTA
* * * * * * *
98257208 AAAGTCAAATCTGCTATTTCTTCGATTTGTCAGTTGTAAACACAAGAATGCCAGACCATTTTGGA
1 AAAGCCAAATCAGCTATGTCTTCGATTTGTC-CTTGT-AACACAAGGATGCCAAACCATCTTGGA
98257273 TCTGCTTCA--AT---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGA
64 TCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGA
98257333 TGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAT-T-T-TC-T-T
129 TGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATATATATCATCT
* *
98257393 -C-ATCGTAAGCACGTG
194 GCTAGCGTAAACACGTG
98257408 AAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGA
1 AAAGCCAAATCAGCTATGTCTTCGATTTG-TCCTTGTAA-CACAAGGATGCCAAACCATCTTGGA
98257473 TCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGA
64 TCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGA
* *
98257538 TGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCGAATCATCTTAGATATGCCAAATCA
129 TGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATAT-----AT-A
98257603 TCTTAGATCTGCTTTAGCGTAAACACGTG
188 TC----ATCTGC--TAGCGTAAACACGTG
* * *
98257632 AAAGCCAAATCTA-CTGTGTCTTCAATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGG
1 AAAGCCAAATC-AGCTATGTCTTCGATTTG-TCCTTGT-AACACAAGGATGCCAAACCATCTTGG
*
98257696 ATCTGCTTCAGTA-AAATCATCTGAAGGTCAGATCTGCTATGT
63 ATCTGCTTCAGTATAAA-CATCTGAAGGTTAGATCTGCTATGT
98257738 CTTTAATCTA
Statistics
Matches: 285, Mismatches: 16, Indels: 34
0.85 0.05 0.10
Matches are distributed among these distances:
199 2 0.01
200 61 0.21
201 2 0.01
202 2 0.01
205 101 0.35
206 1 0.00
212 1 0.00
214 2 0.01
219 1 0.00
220 1 0.00
221 1 0.00
223 3 0.01
224 104 0.36
225 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (210 bp):
AAAGCCAAATCAGCTATGTCTTCGATTTGTCCTTGTAACACAAGGATGCCAAACCATCTTGGATC
TGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATG
CCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATATATATCATCTGC
TAGCGTAAACACGTG
Found at i:98257601 original size:19 final size:19
Alignment explanation
Indices: 98257573--98257610 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
98257563 CAATACAGAG
*
98257573 ATGCCGAATCATCTTAGAT
1 ATGCCAAATCATCTTAGAT
98257592 ATGCCAAATCATCTTAGAT
1 ATGCCAAATCATCTTAGAT
98257611 CTGCTTTAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (19 bp):
ATGCCAAATCATCTTAGAT
Found at i:98258279 original size:205 final size:205
Alignment explanation
Indices: 98257825--98258608 Score: 1224
Period size: 205 Copynumber: 3.8 Consensus size: 205
98257815 AAATCTGTTT
*
98257825 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * ** * *
98257890 GCGAAAACCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGCTGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCAATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
98257955 GGATCTGCTTCAG--T---CATCTAAAGGTTAGATCTGCTATGTATCTGCTTTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
98258015 AGATGCTAGA
196 AGATGCCAGA
* * *
98258025 CTTTGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
98258090 GTGAAAGCCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCAATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
98258155 GGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGTTATGTATCTACTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
98258220 AGATGCCAGA
196 AGATGCCAGA
* *
98258230 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
98258295 GTGAAAGTCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCAATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
98258360 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
98258425 AGATGCCAGA
196 AGATGCCAGA
* * * *
98258435 CTTCGATTTGTTCTCTGACAATACAGAGATGCCGAATCATCTTAGATCTGCTTTAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
98258500 GTGAAAGCCAAATCTA-CTGTGTCTTCAATTTACTCCTTGTGAA-CACAAGGATGCCAAATCATC
66 GTGAAAGCCAAATC-AGCTATGTCTTCAATTTATTCCTTGT-AAGCACAAGGATGCCAAACCATC
* *
98258563 TTGGATCTGCTTCAGTA-AAATCATCTGAAGGTCAGATCTGCTATGT
129 TTGGATCTGCTTCAGTATAAA-CATCTAAAGGTTAGATCTGCTATGT
98258609 CTTTAATCTA
Statistics
Matches: 542, Mismatches: 34, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
200 134 0.25
202 1 0.00
204 3 0.01
205 401 0.74
206 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCAATTTATTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:98259118 original size:204 final size:200
Alignment explanation
Indices: 98258700--98259235 Score: 876
Period size: 204 Copynumber: 2.7 Consensus size: 200
98258690 CTGTTTCTTC
* * * *
98258700 GATTTGTTCTCTAACAATACAGAGATGCCAAATCAACTTAGATTTGCTTCAGCGTAAGCACGCGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
* *
98258765 AAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCATACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
*
98258830 CTGCTTCAGTCATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAG
131 CTACTTCAGTCATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAG
*
98258895 ACTTT
196 ACTTA
* * **
98258900 GATTTGTTCTCTGACAATACAAAAATGCCAAATCATCTTAGATTTGCTTCATTATAAGCACGTG-
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
* *
98258964 AAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGTACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
*
98259029 CTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
131 CTACTTCAG--T---CATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
98259094 GCCAGACTTA
191 GCCAGACTTA
98259104 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
*
98259169 AAGACAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
98259234 CT
131 CT
98259236 TGCTTTAGCC
Statistics
Matches: 308, Mismatches: 22, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
199 69 0.22
200 56 0.18
201 1 0.00
204 118 0.38
205 64 0.21
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (200 bp):
GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
CTACTTCAGTCATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAG
ACTTA
Found at i:98260203 original size:8 final size:7
Alignment explanation
Indices: 98260186--98260252 Score: 52
Period size: 8 Copynumber: 9.4 Consensus size: 7
98260176 GGCCTCTCCG
98260186 TTTTTCT
1 TTTTTCT
98260193 TTTTATCTTT
1 TTTT-TC--T
98260203 TTTTTCTT
1 TTTTTC-T
98260211 TTTTTCT
1 TTTTTCT
*
98260218 TTTTATAT
1 TTTT-TCT
98260226 TTTTTC-
1 TTTTTCT
98260232 -TTTTC-
1 TTTTTCT
98260237 TTTTTCT
1 TTTTTCT
98260244 TTTTT-T
1 TTTTTCT
98260250 TTT
1 TTT
98260253 GAAATAGAAG
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
5 5 0.10
6 9 0.17
7 15 0.29
8 16 0.31
9 2 0.04
10 5 0.10
ACGTcount: A:0.04, C:0.10, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTCT
Found at i:98260208 original size:17 final size:16
Alignment explanation
Indices: 98260186--98260252 Score: 66
Period size: 16 Copynumber: 4.1 Consensus size: 16
98260176 GGCCTCTCCG
98260186 TTTTTCTTTTTATCTTT
1 TTTTTCTTTTT-TCTTT
98260203 TTTTTCTTTTTT-TCTT
1 TTTTTCTTTTTTCT-TT
* *
98260219 TTTATATTTTTTCTTTT
1 TTTTTCTTTTTTC-TTT
98260236 CTTTTTCTTTTTT-TTT
1 -TTTTTCTTTTTTCTTT
98260252 T
1 T
98260253 GAAATAGAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
15 2 0.05
16 16 0.38
17 13 0.31
18 11 0.26
ACGTcount: A:0.04, C:0.10, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTCTTTTTTCTTT
Found at i:98260215 original size:25 final size:26
Alignment explanation
Indices: 98260186--98260247 Score: 92
Period size: 25 Copynumber: 2.4 Consensus size: 26
98260176 GGCCTCTCCG
*
98260186 TTTTTCTTTTTATCTTTTTT-TTCTT-
1 TTTTTCTTTTTATATTTTTTCTT-TTC
98260211 TTTTTCTTTTTATATTTTTTCTTTTC
1 TTTTTCTTTTTATATTTTTTCTTTTC
98260237 TTTTTCTTTTT
1 TTTTTCTTTTT
98260248 TTTTTGAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 21 0.62
26 13 0.38
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (26 bp):
TTTTTCTTTTTATATTTTTTCTTTTC
Found at i:98266948 original size:22 final size:21
Alignment explanation
Indices: 98266913--98266988 Score: 59
Period size: 22 Copynumber: 3.7 Consensus size: 21
98266903 AAAAGGTATC
* *
98266913 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
98266934 TACAAAATCATATCTTCTAGGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
98266957 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
98266976 TGC-AATCATATCT
1 TACAAATCATATCT
98266989 AAGATTGTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
18 6 0.14
19 10 0.23
20 1 0.02
21 3 0.07
22 15 0.34
23 9 0.20
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:98266976 original size:19 final size:19
Alignment explanation
Indices: 98266949--98267039 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
98266939 AATCATATCT
*
98266949 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98266968 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
98266986 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
98267003 TATAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98267022 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
98267040 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.24
19 35 0.53
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:98267002 original size:35 final size:36
Alignment explanation
Indices: 98266961--98267031 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
98266951 TAGGATTGCA
*
98266961 TATCATATCTAAGATTGCA-ATCATATCTAAGATTG
1 TATCATATATAAGATTGCATATCATATCTAAGATTG
98266996 TATCATATATAAGATTGCATATCATATCTAAGATTG
1 TATCATATATAAGATTGCATATCATATCTAAGATTG
98267032 CATATCATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 18 0.53
36 16 0.47
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (36 bp):
TATCATATATAAGATTGCATATCATATCTAAGATTG
Found at i:98269977 original size:19 final size:19
Alignment explanation
Indices: 98269932--98269978 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
98269922 ATCAAATTAA
*
98269932 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
98269951 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
98269970 AATAAAAAT
1 AATAAAAAT
98269979 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:98272477 original size:14 final size:14
Alignment explanation
Indices: 98272460--98272494 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
98272450 CTCACATTTC
98272460 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
98272474 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
98272488 TATTTCT
1 T-TTTCT
98272495 GCTTCTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTCTTTTCTCCA
Found at i:98272478 original size:19 final size:18
Alignment explanation
Indices: 98272440--98272484 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
98272430 TACGGTACGC
98272440 TTCTTTTC-TTCTCACAT
1 TTCTTTTCTTTCTCACAT
98272457 TTCTTTTCTTTTCTC-CATT
1 TTCTTTTC-TTTCTCACA-T
98272476 TTCTTTTCT
1 TTCTTTTCT
98272485 CCATATTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 8 0.32
18 3 0.12
19 14 0.56
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.67
Consensus pattern (18 bp):
TTCTTTTCTTTCTCACAT
Found at i:98275194 original size:16 final size:17
Alignment explanation
Indices: 98275175--98275206 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
98275165 TTATTAAATC
98275175 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
98275191 ATATATTTAATATTAA
1 ATATATTTAATATTAA
98275207 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:98275270 original size:66 final size:63
Alignment explanation
Indices: 98275199--98275411 Score: 194
Period size: 61 Copynumber: 3.4 Consensus size: 63
98275189 AAATATATTT
98275199 AATATTAATTATTTAA-AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTA-TTAAGAATTTTA--TTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
98275263 AG
62 AG
* * * * * * *
98275265 AATATTAATTATTAAGAATTTTATTAA--ATTATATATTTTAATTAT-ATTATATTTA-ATAAT
1 AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* * * *
98275325 AATTATGTTATT-TT-A-TATTTTA--CAGTATCATATATTATGGTTTGAGTAAATTCATATAAG
1 AA-TAT-TAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
98275385 AATATTAATTATTAAGAATTTTATTAA
1 AATATTAATTATTAAGAATTTTATTAA
98275412 ATTATATATT
Statistics
Matches: 113, Mismatches: 21, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
57 1 0.01
58 5 0.04
59 30 0.27
60 14 0.12
61 31 0.27
62 5 0.04
63 2 0.02
64 3 0.03
65 4 0.04
66 18 0.16
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (63 bp):
AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:98275285 original size:120 final size:120
Alignment explanation
Indices: 98275161--98275453 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
98275151 AATTATTTTA
* * *
98275161 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTAT-TTAAAATTT-TATT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATT
*
98275224 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
98275281 AATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
98275346 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
98275401 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
98275454 TAAATATGAT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 4 0.02
120 155 0.96
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:98275313 original size:18 final size:17
Alignment explanation
Indices: 98275282--98275316 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98275272 ATTATTAAGA
98275282 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
98275299 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
98275317 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:98275430 original size:18 final size:17
Alignment explanation
Indices: 98275402--98275436 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98275392 ATTATTAAGA
*
98275402 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
98275419 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
98275437 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:98275550 original size:147 final size:149
Alignment explanation
Indices: 98275390--98275664 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
98275380 ATAAGAATAT
*
98275390 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
98275455 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
98275518 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
98275537 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
98275602 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
98275665 CAATAATCAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 91 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:98275577 original size:18 final size:17
Alignment explanation
Indices: 98275549--98275583 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98275539 ATTATTAAGA
*
98275549 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
98275566 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
98275584 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:98277376 original size:22 final size:22
Alignment explanation
Indices: 98277341--98277396 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
98277331 AAGTTTTTTA
98277341 TTTTTATTTTTTATTTTTAAAT
1 TTTTTATTTTTTATTTTTAAAT
98277363 TTTTTATTTTTTATTTTTAAAT
1 TTTTTATTTTTTATTTTTAAAT
**
98277385 TTTAAATTTTTT
1 TTTTTATTTTTT
98277397 TTGAAGATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTTATTTTTTATTTTTAAAT
Found at i:98277376 original size:29 final size:28
Alignment explanation
Indices: 98277324--98277396 Score: 110
Period size: 29 Copynumber: 2.6 Consensus size: 28
98277314 TTAAATATTA
*
98277324 AAATTTTAAGTTTTTTATTTTTATTTTT
1 AAATTTTAAATTTTTTATTTTTATTTTT
* *
98277352 TATTTTTAAATTTTTTATTTTTTATTTTT
1 AAATTTTAAATTTTTTA-TTTTTATTTTT
98277381 AAATTTTAAATTTTTT
1 AAATTTTAAATTTTTT
98277397 TTGAAGATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 14 0.36
29 25 0.64
ACGTcount: A:0.26, C:0.00, G:0.01, T:0.73
Consensus pattern (28 bp):
AAATTTTAAATTTTTTATTTTTATTTTT
Found at i:98277381 original size:6 final size:7
Alignment explanation
Indices: 98277334--98277380 Score: 69
Period size: 7 Copynumber: 6.7 Consensus size: 7
98277324 AAATTTTAAG
98277334 TTTTTTA
1 TTTTTTA
98277341 -TTTTTA
1 TTTTTTA
98277347 TTTTTTA
1 TTTTTTA
*
98277354 TTTTTAAA
1 TTTTT-TA
98277362 TTTTTTA
1 TTTTTTA
98277369 TTTTTTA
1 TTTTTTA
98277376 TTTTT
1 TTTTT
98277381 AAATTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 6 0.17
7 24 0.67
8 6 0.17
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTA
Found at i:98278019 original size:24 final size:24
Alignment explanation
Indices: 98277991--98278039 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
98277981 CCAAAATAAC
98277991 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
98278015 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
98278039 A
1 A
98278040 TAAATATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:98278042 original size:11 final size:12
Alignment explanation
Indices: 98277998--98278043 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
98277988 AACAATTAAT
98277998 TTTTATATAAAC
1 TTTTATATAAAC
* * *
98278010 TTTTAAATTAAT
1 TTTTATATAAAC
98278022 TTTTATATAAAC
1 TTTTATATAAAC
98278034 TTTTA-ATAAA
1 TTTTATATAAA
98278044 TATATGAGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
11 5 0.18
12 23 0.82
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTATATAAAC
Found at i:98278699 original size:41 final size:41
Alignment explanation
Indices: 98278654--98278832 Score: 259
Period size: 41 Copynumber: 4.4 Consensus size: 41
98278644 GTTATATGAC
* * *
98278654 TTTTAGTGGCGTTTTACTAAAAGTGTCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGTGTCGCTAATGCTCTAGT
*
98278695 TTTTAGCGGCGTTTTACCAAAAGTGTCGCTAATGCTCTATT
1 TTTTAGCGGCGTTTTACCAAAAGTGTCGCTAATGCTCTAGT
* * *
98278736 TTTTAGCGGTGTTTTACCAAAAGTGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGTGTCGCTAATGCTCTAGT
* * * *
98278777 TTTTAGTGGCGTTTTACCAAAAGCGTCTCTAATGCTCTATT
1 TTTTAGCGGCGTTTTACCAAAAGTGTCGCTAATGCTCTAGT
98278818 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
98278833 TTATTGCTCT
Statistics
Matches: 122, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 122 1.00
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.41
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGTGTCGCTAATGCTCTAGT
Found at i:98278751 original size:82 final size:82
Alignment explanation
Indices: 98278654--98278832 Score: 295
Period size: 82 Copynumber: 2.2 Consensus size: 82
98278644 GTTATATGAC
* * * *
98278654 TTTTAGTGGCGTTTTACTAAAAGTGTCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGT
1 TTTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
98278719 GTCGCTAATGCTCTATT
66 GTCGCTAATGCTCTATT
* *
98278736 TTTTAGCGGTGTTTTACCAAAAGTGCCGCTAATGCTCTGGTTTTTAGTGGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
*
98278801 GTCTCTAATGCTCTATT
66 GTCGCTAATGCTCTATT
98278818 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
98278833 TTATTGCTCT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 89 1.00
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.41
Consensus pattern (82 bp):
TTTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
GTCGCTAATGCTCTATT
Found at i:98278889 original size:12 final size:12
Alignment explanation
Indices: 98278874--98278899 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
98278864 ATTTTTTGAT
98278874 AAAACGCCGCTA
1 AAAACGCCGCTA
98278886 AAAACGCCGCTA
1 AAAACGCCGCTA
98278898 AA
1 AA
98278900 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:98280645 original size:7 final size:7
Alignment explanation
Indices: 98280630--98280779 Score: 57
Period size: 7 Copynumber: 21.4 Consensus size: 7
98280620 TGAATTTTAA
*
98280630 AATAGAT
1 AATATAT
98280637 AATATAT
1 AATATAT
98280644 AATAGTAT
1 AATA-TAT
* *
98280652 ATAAAAAT
1 A-ATATAT
98280660 AATA-AT
1 AATATAT
*
98280666 AAATGAAAT
1 -AAT-ATAT
*
98280675 AATTTAT
1 AATATAT
98280682 AATATAT
1 AATATAT
98280689 AATATA-
1 AATATAT
* *
98280695 AAAATGT
1 AATATAT
* *
98280702 AAGTTTTT
1 AA-TATAT
98280710 AA-A-AT
1 AATATAT
*
98280715 AATGTAT
1 AATATAT
98280722 AATATA-
1 AATATAT
*
98280728 AATAAAT
1 AATATAT
98280735 AAATATAT
1 -AATATAT
98280743 AAGATATAT
1 -A-ATATAT
98280752 AAGT-TA-
1 AA-TATAT
98280758 AA-ATAT
1 AATATAT
98280764 AATATAT
1 AATATAT
98280771 AATA-AT
1 AATATAT
98280777 AAT
1 AAT
98280780 CTAAAAATTT
Statistics
Matches: 109, Mismatches: 18, Indels: 33
0.68 0.11 0.21
Matches are distributed among these distances:
5 5 0.05
6 20 0.18
7 49 0.45
8 25 0.23
9 10 0.09
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (7 bp):
AATATAT
Found at i:98280744 original size:28 final size:29
Alignment explanation
Indices: 98280713--98280773 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
98280703 AGTTTTTAAA
98280713 ATAATGTATAATATAA-AT-AAATA-AATAT
1 ATAATG-AT-ATATAAGATAAAATATAATAT
*
98280741 ATAA-GATATATAAGTTAAAATATAATAT
1 ATAATGATATATAAGATAAAATATAATAT
98280769 ATAAT
1 ATAAT
98280774 AATAATCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 6 0.21
26 3 0.11
27 6 0.21
28 13 0.46
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (29 bp):
ATAATGATATATAAGATAAAATATAATAT
Found at i:98282140 original size:30 final size:30
Alignment explanation
Indices: 98282100--98282172 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
98282090 TGTATAATGG
*
98282100 GTCTGGGCTATTTTGGGTTTGCTGTAACGA
1 GTCTGAGCTATTTTGGGTTTGCTGTAACGA
* *
98282130 GTCTGAGCTATTTTGGGTTTGTTGTAACGG
1 GTCTGAGCTATTTTGGGTTTGCTGTAACGA
*
98282160 GTCTGAGGTATTT
1 GTCTGAGCTATTT
98282173 GGGCTTGTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.14, C:0.11, G:0.33, T:0.42
Consensus pattern (30 bp):
GTCTGAGCTATTTTGGGTTTGCTGTAACGA
Found at i:98282385 original size:16 final size:16
Alignment explanation
Indices: 98282364--98282399 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
98282354 TTTGGTTCGC
98282364 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
98282380 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
98282396 TGTA
1 TGTA
98282400 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:98282653 original size:16 final size:16
Alignment explanation
Indices: 98282616--98282657 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
98282606 TTAATCATAT
*
98282616 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
98282632 TT-AAATATATTATAA
1 TTAAAATATATTATAA
98282647 TTAAAATATAT
1 TTAAAATATAT
98282658 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:98282664 original size:14 final size:15
Alignment explanation
Indices: 98282625--98282666 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
98282615 TTTAAACATA
*
98282625 ATTATTATTAAATAT
1 ATTATAATTAAATAT
98282640 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
98282654 A-TATAATTTAATA
1 ATTATAATTAAATA
98282667 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:98282764 original size:120 final size:120
Alignment explanation
Indices: 98282619--98283100 Score: 734
Period size: 120 Copynumber: 4.0 Consensus size: 120
98282609 ATCATATTTA
* *
98282619 AACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCA
1 AACATAATTATTATTAAATATAATT-TAATAAAAATATATAATTTAATAAAATTCTTAATAATAA
* * *
98282683 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
65 ATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
* ** * *
98282739 AACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATATTATTATTAATAATCA
1 AACATAATTATTATTAAATATAATT-TAATAAAAATATATAATTTAATAAAATTCTTAATAATAA
* * * *
98282803 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAATTT
65 ATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
*
98282859 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
1 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
* *
98282924 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATAATTT
66 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
* *
98282979 AAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
1 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
* * *
98283044 TATTCTTATATGAATTTAATAAAATCATAAGATATAATACTATATAATATAGATT
66 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
98283099 AA
1 AA
98283101 TAATGTAGAT
Statistics
Matches: 343, Mismatches: 18, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
120 340 0.99
121 3 0.01
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
Found at i:98282784 original size:14 final size:15
Alignment explanation
Indices: 98282735--98282793 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
98282725 ATAAAATATA
98282735 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
98282750 TATTAAATATATTAT
1 AATTAAATATATTAT
98282765 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
98282778 AATTTAATATTATTAT
1 AATTAAATA-TATTAT
98282794 TAATAATCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 9 0.24
14 7 0.19
15 18 0.49
16 3 0.08
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:98282940 original size:38 final size:37
Alignment explanation
Indices: 98282893--98283068 Score: 140
Period size: 38 Copynumber: 4.5 Consensus size: 37
98282883 TTAATAAAAA
*
98282893 TATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAATTCTTAATATTAAATATTAT
*
98282930 TATATGAATTTAATAAAA-TCATAATA-TATAATACTATAT
1 TATAT-AATTTAATAAAATTCTTAATATTA-AATA-T-TAT
* * * * ** *
98282969 AATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAA
1 TATATAATTT--AATAA-AATTCTT--A-AT-ATTAAATATTAT
*
98283013 TATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAATTCTTAATATTAAATATTAT
98283050 TATATGAATTTAATAAAAT
1 TATAT-AATTTAATAAAAT
98283069 CATAAGATAT
Statistics
Matches: 107, Mismatches: 18, Indels: 27
0.70 0.12 0.18
Matches are distributed among these distances:
36 2 0.02
37 28 0.26
38 33 0.31
39 7 0.07
40 5 0.05
41 6 0.06
42 7 0.07
44 11 0.10
45 2 0.02
46 5 0.05
47 1 0.01
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (37 bp):
TATATAATTTAATAAAATTCTTAATATTAAATATTAT
Found at i:98283042 original size:18 final size:18
Alignment explanation
Indices: 98282876--98283029 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
98282866 TTATTATTAA
98282876 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
*
98282894 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAAAT
* ****
98282912 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAAAT
98282931 ATATGAATTTAAT-AAAAT
1 ATAT-AATTTAATAAAAAT
* * * *
98282949 -CATAATAT-ATAATACT
1 ATATAATTTAATAAAAAT
* *
98282965 ATATAATATAATTTAAAAT
1 ATATAATTTAA-TAAAAAT
* *
98282984 A-ATTA-TT-AT--TAA-
1 ATATAATTTAATAAAAAT
98282996 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
98283014 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
98283030 TTCTTAATAT
Statistics
Matches: 99, Mismatches: 23, Indels: 28
0.66 0.15 0.19
Matches are distributed among these distances:
12 1 0.01
13 5 0.05
14 2 0.02
15 5 0.05
16 8 0.08
17 16 0.16
18 41 0.41
19 15 0.15
20 3 0.03
21 3 0.03
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:98292737 original size:23 final size:24
Alignment explanation
Indices: 98292692--98292738 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
98292682 GAATAGTCTC
*
98292692 AAATCAGAGAACCAAATACCAAAA
1 AAATCAGAGAACCAAAAACCAAAA
98292716 AAATCA-A-AACCGAAAAACCAAAA
1 AAATCAGAGAACC-AAAAACCAAAA
98292739 GTGACTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 11 0.52
24 6 0.29
ACGTcount: A:0.66, C:0.21, G:0.06, T:0.06
Consensus pattern (24 bp):
AAATCAGAGAACCAAAAACCAAAA
Found at i:98295024 original size:26 final size:26
Alignment explanation
Indices: 98294991--98295098 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
98294981 TGATACAAAT
98294991 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
98295017 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98295043 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
98295069 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98295095 TGAT
1 TGAT
98295099 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:98301809 original size:26 final size:26
Alignment explanation
Indices: 98301780--98301887 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
98301770 TGATACAAAT
98301780 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
98301806 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98301832 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
98301858 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98301884 TGAT
1 TGAT
98301888 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:98305290 original size:38 final size:39
Alignment explanation
Indices: 98305203--98305294 Score: 93
Period size: 45 Copynumber: 2.3 Consensus size: 39
98305193 TATAAAAATG
98305203 AAATA-ATATAAATAATTATAATATATAATATGAAAGTAT
1 AAATATATATAAATAATTATAATATATAATA-GAAAGTAT
*
98305242 ATATGTATATATATAAATAATTAATAATATATAATA-CAAGTA-
1 A-A---ATATATATAAATAATT-ATAATATATAATAGAAAGTAT
98305284 AAATATA-ATAA
1 AAATATATATAA
98305295 TATATAAATA
Statistics
Matches: 46, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
37 4 0.09
38 5 0.11
39 1 0.02
40 1 0.02
41 1 0.02
42 1 0.02
43 8 0.17
44 12 0.26
45 13 0.28
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (39 bp):
AAATATATATAAATAATTATAATATATAATAGAAAGTAT
Found at i:98305298 original size:44 final size:43
Alignment explanation
Indices: 98305208--98305305 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 43
98305198 AAATGAAATA
* *
98305208 ATATAAATAATTATAATATATAATATGAAAGTATATATGTATAT
1 ATATAAATAATTATAATATATAATA-GAAAGTAAATATATATAT
*
98305252 ATATAAATAATTAATAATATATAATA-CAAGTAAA-ATATAATAAT
1 ATATAAATAATT-ATAATATATAATAGAAAGTAAATATAT-AT-AT
98305296 ATATAAATAA
1 ATATAAATAA
98305306 GAATGTGAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
42 3 0.06
43 8 0.17
44 24 0.50
45 13 0.27
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.37
Consensus pattern (43 bp):
ATATAAATAATTATAATATATAATAGAAAGTAAATATATATAT
Found at i:98305303 original size:16 final size:16
Alignment explanation
Indices: 98305186--98305304 Score: 52
Period size: 16 Copynumber: 7.1 Consensus size: 16
98305176 ATAAAAAAAC
*
98305186 ATAATAATATAAAAAT
1 ATAATAATATATAAAT
*
98305202 GA-AATAATATAAATAATT
1 -ATAATAATAT--ATAAAT
98305220 ATAATATATAATATGAAAGT
1 ATAATA-AT-ATAT-AAA-T
* *
98305240 AT-AT-ATGTATATAT
1 ATAATAATATATAAAT
98305254 ATAAATAAT-TAATAATAT
1 AT-AATAATAT-ATAA-AT
98305272 ATAATACA-AGTA-AAAT
1 ATAATA-ATA-TATAAAT
98305288 ATAATAATATATAAAT
1 ATAATAATATATAAAT
98305304 A
1 A
98305305 AGAATGTGAA
Statistics
Matches: 79, Mismatches: 6, Indels: 35
0.66 0.05 0.29
Matches are distributed among these distances:
14 3 0.04
15 5 0.06
16 28 0.35
17 15 0.19
18 16 0.20
19 7 0.09
20 5 0.06
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (16 bp):
ATAATAATATATAAAT
Found at i:98305379 original size:16 final size:16
Alignment explanation
Indices: 98305341--98305370 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98305331 AAAAGTGATC
98305341 TATAATAACAATAATA
1 TATAATAACAATAATA
98305357 TATAATAA-AATAAT
1 TATAATAACAATAAT
98305371 TATCTAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
TATAATAACAATAATA
Found at i:98307861 original size:127 final size:127
Alignment explanation
Indices: 98307573--98307873 Score: 372
Period size: 128 Copynumber: 2.4 Consensus size: 127
98307563 GATGCTCAAT
* *
98307573 AATTCGGGGAATCGTGCCCTATCGTGATGGGTTTCGATTTCCCGTTTGTTCAAAATAATCGAATA
1 AATTCGAGGAATCGTG-CCTATCGTGATGGGTTTCGATTTCTCGTTTGTTCAAAATAATCGAATA
* * * ** **
98307638 TTTCTTTAGAACTTCACTCGTGTTTTTCTAAATTCTAAAACAAGGCAATGTTTGATATTTGGA
65 TTCCTTTAGAACTTCACTCGTATTCTTCTAAATTCTAAAACAAACCAATGTTCAATATTTGGA
* * * *
98307701 AATTC-AGGGAATCGTGCTCTATTGTGCTGGGTTTCAATTTCTCGTTTGTTCAGAATAATCGAAT
1 AATTCGA-GGAATCGTGC-CTATCGTGATGGGTTTCGATTTCTCGTTTGTTCAAAATAATCGAAT
* * *
98307765 ATTCCTTTAGAATTTCATTCGTATTCTT-TAAATTCTAAAACAAACCAATGTTCAATGTTTGGA
64 ATTCCTTTAGAACTTCACTCGTATTCTTCTAAATTCTAAAACAAACCAATGTTCAATATTTGGA
* * * *
98307828 AGTTCGAGGAATCGTGTCCTACCGTGTTGGGTTTCGATTTTTCGTT
1 AATTCGAGGAATCGTG-CCTATCGTGATGGGTTTCGATTTCTCGTT
98307874 GGACTAAATA
Statistics
Matches: 147, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
127 67 0.46
128 80 0.54
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (127 bp):
AATTCGAGGAATCGTGCCTATCGTGATGGGTTTCGATTTCTCGTTTGTTCAAAATAATCGAATAT
TCCTTTAGAACTTCACTCGTATTCTTCTAAATTCTAAAACAAACCAATGTTCAATATTTGGA
Found at i:98313783 original size:16 final size:16
Alignment explanation
Indices: 98313762--98313792 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98313752 TGCACATTAC
98313762 TACACGTTGCAAGGGA
1 TACACGTTGCAAGGGA
*
98313778 TACACGTTGCCAGGG
1 TACACGTTGCAAGGG
98313793 GTCTTGATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.23, G:0.32, T:0.19
Consensus pattern (16 bp):
TACACGTTGCAAGGGA
Found at i:98315773 original size:46 final size:46
Alignment explanation
Indices: 98315715--98315811 Score: 140
Period size: 46 Copynumber: 2.1 Consensus size: 46
98315705 CAATATATAT
* **
98315715 ATATACATCTCATACATATCTCACATTAGCCATTTGGCTTTACCAC
1 ATATACATCTCATACACATCTCACATTAGCCATTCAGCTTTACCAC
* * *
98315761 ATATCCATCTCATACACATTTCGCATTAGCCATTCAGCTTTACCAC
1 ATATACATCTCATACACATCTCACATTAGCCATTCAGCTTTACCAC
98315807 ATATA
1 ATATA
98315812 TACACTTCCA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (46 bp):
ATATACATCTCATACACATCTCACATTAGCCATTCAGCTTTACCAC
Found at i:98315858 original size:47 final size:47
Alignment explanation
Indices: 98315784--98316115 Score: 450
Period size: 47 Copynumber: 7.1 Consensus size: 47
98315774 ACACATTTCG
* * * * * * *
98315784 CATTAGCCATTCAGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
98315831 CATTGGCCATTCTGCCTTAACACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
98315878 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
98315925 CATTGACCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
98315972 CATTGACCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
98316019 CATTGGCCATTTGGCATTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
98316066 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
98316113 CAT
1 CAT
98316116 AAAATCCTAA
Statistics
Matches: 260, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 259 1.00
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:98315972 original size:25 final size:25
Alignment explanation
Indices: 98315943--98316020 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
98315933 ATTCGGCCTT
98315943 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
98315968 AT--CACAT-TGACCA--TTCGGCCTT-
1 ATCACACATATG--CATGTTC-ACATTC
98315990 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
98316015 ATCACA
1 ATCACA
98316021 TTGGCCATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 7 0.17
23 10 0.25
24 10 0.25
25 13 0.32
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:98315995 original size:22 final size:22
Alignment explanation
Indices: 98315921--98315995 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
98315911 GTTCATATTC
98315921 ATCACATTGACCATTCGGCCTT
1 ATCACATTGACCATTCGGCCTT
* *
98315943 ATCACACATATG--CATGTTC-ACATT
1 AT--CACAT-TGACCA--TTCGGCCTT
98315967 CATCACATTGACCATTCGGCCTT
1 -ATCACATTGACCATTCGGCCTT
98315990 ATCACA
1 ATCACA
98315996 CATATGCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 13 0.32
23 10 0.25
24 10 0.25
25 7 0.17
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.31
Consensus pattern (22 bp):
ATCACATTGACCATTCGGCCTT
Found at i:98322411 original size:87 final size:87
Alignment explanation
Indices: 98322243--98323187 Score: 981
Period size: 87 Copynumber: 10.8 Consensus size: 87
98322233 AATTGACAAG
* * * * *
98322243 CCTTAACCCCCTAAGTAGCAGGGTAACAGGCTGAAGA-TTATAGA-CATTGTCTCCCTAAGCAGT
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AA-ATTTACAGATC-TTATCACCCTAAGCAGT
* * *
98322306 AGTGAAGCAGATCGAAGACGATGGA
63 AGGGAAACAGATCGAAGATGATGGA
* * *
98322331 CCTTAACCCCCTAAGCAGTAGGGTAATAGGCTAAATTTATAGATCTTATGACCCTAAGCAGTAGG
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTATCACCCTAAGCAGTAGG
* * ** * *
98322396 GAAATAGATCAAAGACAACGGG
66 GAAACAGATCGAAGATGATGGA
* * *
98322418 CCTTAACCCCCTAAACA-TAGGGTAATAGGCTAAAAATTACAGATCTTATCACCCTAAGCAGTAG
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AAATTTACAGATCTTATCACCCTAAGCAGTAG
* * *
98322482 GGAAATAGATCGAAGACGACAGG-
65 GGAAACAGATCGAAGATGA-TGGA
* * * * * *
98322505 CCTTAACCTCCTAAGCAATAGCGTAACAGGCTGAAAATTACAGATTTTATCACCCCAAGCAGTAG
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AAATTTACAGATCTTATCACCCTAAGCAGTAG
* * * *
98322570 GGAAACAGATCAAAGACGACGGG
65 GGAAACAGATCGAAGATGATGGA
* * * * *
98322593 CCTTAACCCCCTAAACAGTAGGGTAACAAGCTGAATTGACAGATCTTATCACCCTAAGTAGTAGG
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTATCACCCTAAGCAGTAGG
* * * *
98322658 AAAACAGATCGAAGGTGGTGAA
66 GAAACAGATCGAAGATGATGGA
* * *
98322680 CCTTAACCCCCTAAGCAGTAGGGTAACAGGTTGAATTGACAGATCTTATCACCCTAAGCAGTAGG
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTATCACCCTAAGCAGTAGG
* *
98322745 GAAACAGATCGAAGGTGATGGG
66 GAAACAGATCGAAGATGATGGA
* * * * * *
98322767 CCTTAACCCCCTAAGTAGTAGGGTAGCAGGCTGAATTGACAAATCTTATCACCCTAAGCAATAGG
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTATCACCCTAAGCAGTAGG
* *
98322832 GAAACAGATCGAAGGTGGT-GA
66 GAAACAGATCGAAGATGATGGA
* * * *
98322853 GCCTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTGACAAATCTTATCACCCTAAGCAGTAG
1 -CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTATCACCCTAAGCAGTAG
* * *
98322918 GGAAACAGATCGACGGTGATGGG
65 GGAAACAGATCGAAGATGATGGA
* * * *
98322941 CCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGATTTTATCACCTTAAGCAGTAGG
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTATCACCCTAAGCAGTAGG
* * *
98323006 GAAACAAATCGAAGGTGGT-GA
66 GAAACAGATCGAAGATGATGGA
* * *
98323027 GCCTTAACCCCCTAAGTAATAGGGTAATAGGCTAAA-TTACAGATCTTATCACCCTAAGCAGTAC
1 -CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTATCACCCTAAGCAGTA-
* *
98323091 GGG-AACGGATCAAAGATGA-GGA
64 GGGAAACAGATCGAAGATGATGGA
* * * * * * *
98323113 GTCTTAACCCCTTAAGCAGTAGGGTAACAGGCTGGAAATTCATAGATTTTATCTCCTTAAGCAGT
1 -CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT--AAATTTACAGATCTTATCACCCTAAGCAGT
*
98323178 AGGGCAACAG
63 AGGGAAACAG
98323188 GCTGAAAATT
Statistics
Matches: 740, Mismatches: 102, Indels: 29
0.85 0.12 0.03
Matches are distributed among these distances:
86 83 0.11
87 506 0.68
88 125 0.17
89 26 0.04
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (87 bp):
CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTATCACCCTAAGCAGTAGG
GAAACAGATCGAAGATGATGGA
Found at i:98322489 original size:44 final size:44
Alignment explanation
Indices: 98322339--98322574 Score: 140
Period size: 44 Copynumber: 5.4 Consensus size: 44
98322329 GACCTTAACC
* * * *
98322339 CCCTAAGCAGTAGGGTAATAGGCT-AAATTTATAGATCTTATGA
1 CCCTAAGCAGTAGGGAAATAGGCTAAAAATTACAGATCTTATCA
* * ** * ** * *
98322382 CCCTAAGCAGTAGGGAAATA-GATCAAAGACAACGGGCCTTAACC
1 CCCTAAGCAGTAGGGAAATAGGCT-AAAAATTACAGATCTTATCA
* *
98322426 CCCTAAACA-TAGGGTAATAGGCTAAAAATTACAGATCTTATCA
1 CCCTAAGCAGTAGGGAAATAGGCTAAAAATTACAGATCTTATCA
* * * ** ** *
98322469 CCCTAAGCAGTAGGGAAATA-GATCGAAGACGACAGGCCTTAAC-
1 CCCTAAGCAGTAGGGAAATAGGCT-AAAAATTACAGATCTTATCA
* * * * * *
98322512 CTCCTAAGCAATAGCGTAACAGGCTGAAAATTACAGATTTTATCA
1 C-CCTAAGCAGTAGGGAAATAGGCTAAAAATTACAGATCTTATCA
*
98322557 CCCCAAGCAGTAGGGAAA
1 CCCTAAGCAGTAGGGAAA
98322575 CAGATCAAAG
Statistics
Matches: 135, Mismatches: 50, Indels: 15
0.68 0.25 0.08
Matches are distributed among these distances:
42 2 0.01
43 51 0.38
44 79 0.59
45 3 0.02
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGAAATAGGCTAAAAATTACAGATCTTATCA
Found at i:98322612 original size:44 final size:44
Alignment explanation
Indices: 98322382--98322789 Score: 148
Period size: 44 Copynumber: 9.3 Consensus size: 44
98322372 GATCTTATGA
* * *
98322382 CCCTAAGCAGTAGGGAAATAGATCAAAGACAACGGGCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATCAAAGACGACAGGCCTTAACC
* * * * * ** ** * *
98322426 CCCTAAACA-TAGGGTAATAG-GCTAAAAATTACAGATCTTATCA
1 CCCTAAGCAGTAGGGAAACAGATC-AAAGACGACAGGCCTTAACC
* *
98322469 CCCTAAGCAGTAGGGAAATAGATCGAAGACGACAGGCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATCAAAGACGACAGGCCTTAACC
* * * * * * ** *** *
98322513 TCCTAAGCAATAGCGTAACAGGCTGAAA-ATTACAGATTTTATCAC
1 CCCTAAGCAGTAGGGAAACA-GATCAAAGACGACAGGCCTTAAC-C
*
98322558 CCC-AAGCAGTAGGGAAACAGATCAAAGACGACGGGCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATCAAAGACGACAGGCCTTAACC
* * * * ** ** * *
98322601 CCCTAAACAGTAGGGTAACA-AGCTGAA-TTGACAGATCTTATCA
1 CCCTAAGCAGTAGGGAAACAGATC-AAAGACGACAGGCCTTAACC
* * * ** ** *
98322644 CCCTAAGTAGTAGGAAAACAGATCGAAGGTG-GTGAACCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATCAAAGACGACAG-GCCTTAACC
* * ** ** ** * *
98322688 CCCTAAGCAGTAGGGTAACAGGTTGAA-TTGACAGATCTTATCA
1 CCCTAAGCAGTAGGGAAACAGATCAAAGACGACAGGCCTTAACC
* ** **
98322731 CCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGGCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATCAAAGACGACAGGCCTTAACC
*
98322775 CCCTAAGTAGTAGGG
1 CCCTAAGCAGTAGGG
98322790 TAGCAGGCTG
Statistics
Matches: 258, Mismatches: 93, Indels: 26
0.68 0.25 0.07
Matches are distributed among these distances:
42 1 0.00
43 102 0.40
44 147 0.57
45 8 0.03
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGAAACAGATCAAAGACGACAGGCCTTAACC
Found at i:98323175 original size:45 final size:44
Alignment explanation
Indices: 98323112--98323214 Score: 136
Period size: 45 Copynumber: 2.3 Consensus size: 44
98323102 AAAGATGAGG
* * * *
98323112 AGTCTTAACCCCTTAAGCAGTAGGGTAACAGGCTGGAAATT-CA
1 AGTCTTATCTCCTTAAGCAGTAGGGCAACAGGCTGAAAATTACA
*
98323155 TAGATTTTATCTCCTTAAGCAGTAGGGCAACAGGCTGAAAATTACA
1 -AG-TCTTATCTCCTTAAGCAGTAGGGCAACAGGCTGAAAATTACA
98323201 AGTCTTATCTCCTT
1 AGTCTTATCTCCTT
98323215 GAAGTTGCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
44 13 0.25
45 36 0.71
46 2 0.04
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (44 bp):
AGTCTTATCTCCTTAAGCAGTAGGGCAACAGGCTGAAAATTACA
Found at i:98323238 original size:45 final size:45
Alignment explanation
Indices: 98323199--98323323 Score: 173
Period size: 45 Copynumber: 2.8 Consensus size: 45
98323189 CTGAAAATTA
*
98323199 CAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAG
1 CAAGTCTTATCTCCTTGAAGTTACAGTGGAGCAGACTGAAGATAG
*
98323244 CAAGTCTTATCTCCTTGAAGTTAC-GTTGGAGTAGACTGAAGATAG
1 CAAGTCTTATCTCCTTGAAGTTACAG-TGGAGCAGACTGAAGATAG
* * *
98323289 CAAATATTATCT-CTCTGAAGTTACAGTAGAGCAGA
1 CAAGTCTTATCTCCT-TGAAGTTACAGTGGAGCAGA
98323324 TCTTCTTGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
44 3 0.04
45 67 0.94
46 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (45 bp):
CAAGTCTTATCTCCTTGAAGTTACAGTGGAGCAGACTGAAGATAG
Found at i:98325991 original size:127 final size:127
Alignment explanation
Indices: 98325807--98326109 Score: 398
Period size: 127 Copynumber: 2.4 Consensus size: 127
98325797 TTTGATGCTC
*
98325807 GGAAATTC-GGAGAATCGTGCCCTATCGTGCTGGGTTTCGATTTCCCGTTTGTTCAAAATAATCG
1 GGAAATTCGGGA-AATCGTGCCCTATCGTGCTGGGTTTCGATTTCTCGTTTGTTCAAAATAATCG
* ** **
98325871 AATATTCATTTAGAACTTCACTCGTTTT-TTCTAAATTCTGAAACAAGGCAATGTTTGATATTT
65 AATATTCATTTAGAACTTCACTCGTTTTCTT-TAAATTCTAAAACAAACCAATGTTCAATATTT
* * *
98325934 TGAAATTCGGGAAATCGTGCTCTATCATGCTGGGTTTCGATTTCTCGTTTGTTCAAAATAATCGA
1 GGAAATTCGGGAAATCGTGCCCTATCGTGCTGGGTTTCGATTTCTCGTTTGTTCAAAATAATCGA
* * * *
98325999 ATATTCCTTTAGAATTTCATTCGTTTTCTTTAAATTCTAAAACAAACCAATGTTCAATGTTT
66 ATATTCATTTAGAACTTCACTCGTTTTCTTTAAATTCTAAAACAAACCAATGTTCAATATTT
* * *
98326061 GGAAGTTCGAGG-AATCGTGCCCTA-CTGTGCTGGGTTTCGGTTTTTCGTT
1 GGAAATTCG-GGAAATCGTGCCCTATC-GTGCTGGGTTTCGATTTCTCGTT
98326110 GGACTAAATA
Statistics
Matches: 153, Mismatches: 19, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
126 1 0.01
127 145 0.95
128 7 0.05
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (127 bp):
GGAAATTCGGGAAATCGTGCCCTATCGTGCTGGGTTTCGATTTCTCGTTTGTTCAAAATAATCGA
ATATTCATTTAGAACTTCACTCGTTTTCTTTAAATTCTAAAACAAACCAATGTTCAATATTT
Found at i:98328952 original size:9 final size:9
Alignment explanation
Indices: 98328913--98329007 Score: 88
Period size: 9 Copynumber: 10.4 Consensus size: 9
98328903 TTAAATATTT
*
98328913 AAAATTATT
1 AAAATTATA
*
98328922 AAAATTGACA
1 AAAATT-ATA
*
98328932 CAAATT-TA
1 AAAATTATA
98328940 AAAATTATA
1 AAAATTATA
98328949 AAAACTTATA
1 AAAA-TTATA
*
98328959 AATATTATA
1 AAAATTATA
*
98328968 AAAATTCTA
1 AAAATTATA
98328977 ATAAATTATA
1 A-AAATTATA
98328987 AAACA--ATA
1 AAA-ATTATA
98328995 AAAATTATA
1 AAAATTATA
98329004 AAAA
1 AAAA
98329008 GTGATTTAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
7 1 0.01
8 12 0.17
9 34 0.49
10 23 0.33
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (9 bp):
AAAATTATA
Found at i:98328965 original size:19 final size:19
Alignment explanation
Indices: 98328938--98329007 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
98328928 GACACAAATT
98328938 TAAAAATTATAAAAACTTA
1 TAAAAATTATAAAAACTTA
* *
98328957 TAAATATTATAAAAA-TTC
1 TAAAAATTATAAAAACTTA
*
98328975 TAATAAATTAT-AAAAC-AA
1 TAA-AAATTATAAAAACTTA
98328993 TAAAAATTATAAAAA
1 TAAAAATTATAAAAA
98329008 GTGATTTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
17 7 0.16
18 16 0.37
19 20 0.47
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAAATTATAAAAACTTA
Found at i:98328970 original size:27 final size:27
Alignment explanation
Indices: 98328877--98329007 Score: 96
Period size: 27 Copynumber: 4.9 Consensus size: 27
98328867 AAATATTGAT
* *
98328877 TAAATTTTAT-AAAA-TATAAAAAAATA
1 TAAATATTATAAAAATTAT-AAAAATTA
*
98328903 TTAAATATT-T-AAAATTATTAAAATTGA
1 -TAAATATTATAAAAATTATAAAAATT-A
*
98328930 CACAA-ATT-TAAAAATTATAAAAACTTA
1 TA-AATATTATAAAAATTATAAAAA-TTA
*
98328957 TAAATATTATAAAAATTCTAATAAATTA
1 TAAATATTATAAAAATTATAA-AAATTA
**
98328985 TAAA-ACAATAAAAATTATAAAAA
1 TAAATATTATAAAAATTATAAAAA
98329008 GTGATTTAAA
Statistics
Matches: 86, Mismatches: 10, Indels: 17
0.76 0.09 0.15
Matches are distributed among these distances:
26 20 0.23
27 43 0.50
28 20 0.23
29 3 0.03
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (27 bp):
TAAATATTATAAAAATTATAAAAATTA
Found at i:98328973 original size:36 final size:36
Alignment explanation
Indices: 98328933--98329007 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
98328923 AAATTGACAC
* *
98328933 AAATT-TAA-AAATTATAAAAACTTATAAATATTATAA
1 AAATTCTAATAAATTAT-AAAAC-AATAAAAATTATAA
98328969 AAATTCTAATAAATTATAAAACAATAAAAATTATAA
1 AAATTCTAATAAATTATAAAACAATAAAAATTATAA
98329005 AAA
1 AAA
98329008 GTGATTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 20 0.57
37 8 0.23
38 7 0.20
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (36 bp):
AAATTCTAATAAATTATAAAACAATAAAAATTATAA
Found at i:98335921 original size:10 final size:9
Alignment explanation
Indices: 98335902--98335976 Score: 91
Period size: 9 Copynumber: 8.3 Consensus size: 9
98335892 AAATTGACAC
98335902 AAATT-TAA
1 AAATTATAA
98335910 AAATTATAA
1 AAATTATAA
98335919 AAACTTATAA
1 AAA-TTATAA
*
98335929 ATATTATAA
1 AAATTATAA
*
98335938 AAATTCTAA
1 AAATTATAA
98335947 TAAATTAT-A
1 -AAATTATAA
*
98335956 AAATAATAA
1 AAATTATAA
98335965 AAATTATAA
1 AAATTATAA
98335974 AAA
1 AAA
98335977 GTGATTTAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
8 11 0.19
9 32 0.56
10 14 0.25
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (9 bp):
AAATTATAA
Found at i:98335934 original size:19 final size:18
Alignment explanation
Indices: 98335902--98335976 Score: 91
Period size: 19 Copynumber: 4.2 Consensus size: 18
98335892 AAATTGACAC
98335902 AAATT-TAAAAATTATAA
1 AAATTATAAAAATTATAA
*
98335919 AAACTTATAAATATTATAA
1 AAA-TTATAAAAATTATAA
*
98335938 AAATTCTAATAAATTAT-A
1 AAATTATAA-AAATTATAA
*
98335956 AAATAATAAAAATTATAA
1 AAATTATAAAAATTATAA
98335974 AAA
1 AAA
98335977 GTGATTTAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
17 10 0.20
18 19 0.39
19 20 0.41
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATTATAAAAATTATAA
Found at i:98336567 original size:10 final size:11
Alignment explanation
Indices: 98336538--98336571 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
98336528 CCTGACTATG
98336538 TTTAGATAATTT
1 TTTA-ATAATTT
98336550 TTTAATAATTT
1 TTTAATAATTT
98336561 TTT-ATAATTT
1 TTTAATAATTT
98336571 T
1 T
98336572 ATATGTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 10 0.45
12 4 0.18
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (11 bp):
TTTAATAATTT
Found at i:98336607 original size:19 final size:18
Alignment explanation
Indices: 98336549--98336609 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
98336539 TTAGATAATT
*
98336549 TTTTAATAATTTTTTATAA
1 TTTTAAT-ATTTTTAATAA
*
98336568 TTTT-ATATGTTTATATCAA
1 TTTTAATATTTTTA-AT-AA
98336587 TTTTAATATTTTTGAATAA
1 TTTTAATATTTTT-AATAA
98336606 TTTT
1 TTTT
98336610 TATAAGTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
17 5 0.14
18 4 0.11
19 16 0.46
20 9 0.26
21 1 0.03
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTTAATATTTTTAATAA
Found at i:98336609 original size:10 final size:9
Alignment explanation
Indices: 98336549--98336630 Score: 51
Period size: 10 Copynumber: 8.6 Consensus size: 9
98336539 TTAGATAATT
98336549 TTTTAATAA
1 TTTTAATAA
*
98336558 TTTTTTATAA
1 -TTTTAATAA
98336568 TTTT-AT-A
1 TTTTAATAA
98336575 TGTTTATATCAA
1 T-TTTA-AT-AA
*
98336587 TTTTAATAT
1 TTTTAATAA
98336596 TTTTGAATAA
1 TTTT-AATAA
*
98336606 TTTTTATAA
1 TTTTAATAA
*
98336615 GTTTGTAAGAA
1 -TTT-TAATAA
98336626 TTTTA
1 TTTTA
98336631 TAGGTTTGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
7 2 0.03
8 5 0.09
9 15 0.26
10 26 0.45
11 8 0.14
12 2 0.03
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.59
Consensus pattern (9 bp):
TTTTAATAA
Found at i:98336619 original size:19 final size:18
Alignment explanation
Indices: 98336564--98336643 Score: 54
Period size: 19 Copynumber: 4.2 Consensus size: 18
98336554 ATAATTTTTT
*
98336564 ATAATTTTATATGTTT-A
1 ATAATTTTATAAGTTTGA
**
98336581 TATCAATTTTAATATTTTTGA
1 -AT-AATTTT-ATAAGTTTGA
98336602 ATAATTTTTATAAGTTTGTA
1 ATAA-TTTTATAAGTTTG-A
* * *
98336622 AGAATTTTATAGGTTTGT
1 ATAATTTTATAAGTTTGA
98336640 ATAA
1 ATAA
98336644 AATTTTAAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
18 5 0.10
19 27 0.54
20 17 0.34
21 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.10, T:0.54
Consensus pattern (18 bp):
ATAATTTTATAAGTTTGA
Found at i:98336647 original size:20 final size:19
Alignment explanation
Indices: 98336607--98336650 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
98336597 TTTGAATAAT
*
98336607 TTTTATAAGTTTGTAAGAA
1 TTTTATAAGTTTGTAAAAA
*
98336626 TTTTATAGGTTTGTATAAAA
1 TTTTATAAGTTTGTA-AAAA
98336646 TTTTA
1 TTTTA
98336651 AATATTTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (19 bp):
TTTTATAAGTTTGTAAAAA
Found at i:98336837 original size:19 final size:20
Alignment explanation
Indices: 98336778--98336838 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 20
98336768 TAAATTTTAA
* *
98336778 TATATATTTTT-ATAATTTG
1 TATACATTTTTAATAATTTT
*
98336797 TATAGCATTTTCTAATTA-TTT
1 TATA-CATTTT-TAATAATTTT
98336818 TATA-ATTTTTAATAATTTT
1 TATACATTTTTAATAATTTT
98336837 TA
1 TA
98336839 ACAATGCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 5 0.15
19 14 0.41
20 5 0.15
21 7 0.21
22 3 0.09
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (20 bp):
TATACATTTTTAATAATTTT
Found at i:98337270 original size:26 final size:26
Alignment explanation
Indices: 98337234--98337343 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
98337224 TGATACAAAT
98337234 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
98337260 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
98337286 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
98337312 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
98337338 TTATAA
1 TGATAA
98337344 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:98340400 original size:128 final size:127
Alignment explanation
Indices: 98340222--98340453 Score: 360
Period size: 128 Copynumber: 1.8 Consensus size: 127
98340212 CATGCATTGA
* *
98340222 AATTTTAAAAAGATATTCGGTTATTTGGTCAAACGGTAAATCGAAACCCAGCACGTTGGGGCACG
1 AATTTTAAAAAGATATTCGGTCATTTGGTCAAACGGAAAATCGAAACCCAGCACGTTGGGGCACG
*
98340287 ATTTTCTCGAATTTTCAAACACAAAATATTGCCTTGTTTTTTAATTGAAGAAAACACGGACGG
66 A-TTTCTCGAATTTTCAAACACAAAATATTGCCTTATTTTTTAATTGAAGAAAACACGGACGG
* * *
98340350 AATTTTAAAAGGGTAATT-GGTCATTTGGTCAAACGGAAAATC-AAAGCCCAGCTCGTTGGGGCA
1 AATTTTAAAAAGAT-ATTCGGTCATTTGGTCAAACGGAAAATCGAAA-CCCAGCACGTTGGGGCA
*
98340413 CGATTTCTCGAATTTTCAAACACGAAATATTGCCTTATTTT
64 CGATTTCTCGAATTTTCAAACACAAAATATTGCCTTATTTT
98340454 GAAAACTTTT
Statistics
Matches: 95, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
127 39 0.41
128 53 0.56
129 3 0.03
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (127 bp):
AATTTTAAAAAGATATTCGGTCATTTGGTCAAACGGAAAATCGAAACCCAGCACGTTGGGGCACG
ATTTCTCGAATTTTCAAACACAAAATATTGCCTTATTTTTTAATTGAAGAAAACACGGACGG
Found at i:98342202 original size:11 final size:11
Alignment explanation
Indices: 98342186--98342227 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
98342176 AAAAAAATTG
98342186 AATATAAAAAT
1 AATATAAAAAT
*
98342197 AATATAAGAAT
1 AATATAAAAAT
98342208 ATATATAAAAAAT
1 A-ATAT-AAAAAT
98342221 AA-ATAAA
1 AATATAAA
98342228 TGATATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 3 0.11
11 13 0.48
12 5 0.19
13 6 0.22
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (11 bp):
AATATAAAAAT
Found at i:98342211 original size:21 final size:21
Alignment explanation
Indices: 98342187--98342240 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 21
98342177 AAAAAATTGA
*
98342187 ATATAAAAATAATATAA-GAAT-
1 ATATAAAAA-AATA-AATAAATG
98342208 ATATATAAAAAATAAATAAATG
1 ATATA-AAAAAATAAATAAATG
98342230 ATATAAAAAAA
1 ATATAAAAAAA
98342241 ACTAACGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 2 0.07
21 18 0.62
22 9 0.31
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (21 bp):
ATATAAAAAAATAAATAAATG
Found at i:98342514 original size:35 final size:37
Alignment explanation
Indices: 98342466--98342536 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 37
98342456 TGTATATAAT
98342466 AAAATAACCTAATATAAA-TAAT-AAATAAATAAAAC
1 AAAATAACCTAATATAAACTAATAAAATAAATAAAAC
** *
98342501 AAAATAATTTAATATAAACTAGTAAAATAAATAAAA
1 AAAATAACCTAATATAAACTAATAAAATAAATAAAA
98342537 AAGGTTAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 16 0.52
36 3 0.10
37 12 0.39
ACGTcount: A:0.68, C:0.06, G:0.01, T:0.25
Consensus pattern (37 bp):
AAAATAACCTAATATAAACTAATAAAATAAATAAAAC
Found at i:98343276 original size:70 final size:70
Alignment explanation
Indices: 98343163--98343308 Score: 258
Period size: 70 Copynumber: 2.1 Consensus size: 70
98343153 AATCTCGATG
*
98343163 TTCTTTGTCAAAGTTTTCGGCCATACTTGGTTTGATGTTGGTCTAAAAAGTATCATGCTTTTTTT
1 TTCTTTGTCAAAGTCTTCGGCCATACTTGGTTTGATGTTGGTCTAAAAAGTATCATGC-TTTTTT
98343228 TAC-TT
65 TACTTT
*
98343233 TTCTTTGTCAAAGTCTTCGGCCATACTTGGTTTTATGTTGGTCTAAAAAGTATCATGCTTTTTTT
1 TTCTTTGTCAAAGTCTTCGGCCATACTTGGTTTGATGTTGGTCTAAAAAGTATCATGCTTTTTTT
98343298 ACTTT
66 ACTTT
98343303 TTCTTT
1 TTCTTT
98343309 CCTACTTCGG
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
69 9 0.12
70 64 0.88
ACGTcount: A:0.19, C:0.15, G:0.16, T:0.50
Consensus pattern (70 bp):
TTCTTTGTCAAAGTCTTCGGCCATACTTGGTTTGATGTTGGTCTAAAAAGTATCATGCTTTTTTT
ACTTT
Found at i:98347408 original size:15 final size:15
Alignment explanation
Indices: 98347388--98347418 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
98347378 TATATATTAG
*
98347388 ATAATATATGATAAA
1 ATAATATATAATAAA
98347403 ATAATATATAATAAA
1 ATAATATATAATAAA
98347418 A
1 A
98347419 CCCTGTAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
ATAATATATAATAAA
Found at i:98349361 original size:132 final size:131
Alignment explanation
Indices: 98349132--98349659 Score: 448
Period size: 132 Copynumber: 4.0 Consensus size: 131
98349122 GAGATCTGTT
* * * * * * * * * *
98349132 ATCTTCAGTCTACTCCACT-GTAGCTTTAGGGAGATAAGACTTGTGGTTTCAATCTAC-TCCCCT
1 ATCTTCAGCCTACTCCACTACT-GC-TCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTT
* * * * *
98349195 ACTATCTT-AGGAAGATAAGATTCGCTGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAGGA
64 ACTACCTTAAGG-AGATAAGATTCGCCGTC-TTGATCTGCTCCACTACT-CTCATGGAGATAAGA
98349259 TCTACA
126 TCTACA
* *
98349265 ATCTTCAGCCTATTCCACTTCTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCC-TAC
1 ATCTTCAGCCTACTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTTAC
* * *
98349329 TACCTT-GGGAAGATAAGATTTGCCGTTCTTGATCGGCTCCATTGCTAC-CTCATGGAGATAAGA
66 TACCTTAAGG-AGATAAGATTCGCCG-TCTTGATCTGCTCCA---CTACTCTCATGGAGATAAGA
98349392 TCTACA
126 TCTACA
* * * * * * *
98349398 ATCTTCAGCCTACTCCACTGCTGCTTAGGGAGA-TAGGATGGTGGCTTGAATCTGC-TCCCTTGC
1 ATCTTCAGCCTACTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTTAC
* ** *
98349461 TGCCTTAAGGAGATAAGATTCATCATCTTCGATCTGCTCCATCGCTAC-CTCATGGAGATAAGAT
66 TACCTTAAGGAGATAAGATTCGCCGTCTT-GATCTGCTCCA---CTACTCTCATGGAGATAAGAT
98349525 CTACA
127 CTACA
* * * * *
98349530 ATCTTTAGTCTGCTCCACTACTGCTCAGGGATACAAGGCTAGTGGCTTAAATCTG-TTCCCTTGC
1 ATCTTCAGCCTACTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTTAC
* * * * *
98349594 TACCTTAGGGAGATAAGATTCACCGTCTTCGATTTGCTTCATTGCTAC-CTTATGGAGATAAGAT
66 TACCTTAAGGAGATAAGATTCGCCGTCTT-GATCTGCTCCA---CTACTCTCATGGAGATAAGAT
98349658 CT
127 CT
98349660 GTGAATTCAC
Statistics
Matches: 332, Mismatches: 52, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
131 8 0.02
132 161 0.48
133 158 0.48
134 1 0.00
135 4 0.01
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (131 bp):
ATCTTCAGCCTACTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTTAC
TACCTTAAGGAGATAAGATTCGCCGTCTTGATCTGCTCCACTACTCTCATGGAGATAAGATCTAC
A
Found at i:98357932 original size:11 final size:11
Alignment explanation
Indices: 98357900--98357941 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
98357890 AAATTATGTA
98357900 TATATATTTTT
1 TATATATTTTT
* * *
98357911 TCTTTACTTTT
1 TATATATTTTT
98357922 TATATATTTTT
1 TATATATTTTT
98357933 TATAT-TTTT
1 TATATATTTT
98357942 ACAAATTTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
10 4 0.16
11 21 0.84
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (11 bp):
TATATATTTTT
Found at i:98361914 original size:22 final size:22
Alignment explanation
Indices: 98361871--98361914 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
98361861 AGTCTCGCCA
* *
98361871 TCAATCAATTATTATTATTATT
1 TCAATAAATTATTATTAATATT
98361893 TCAATAAATTA-TATTAAATATT
1 TCAATAAATTATTATT-AATATT
98361915 GATAAGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (22 bp):
TCAATAAATTATTATTAATATT
Found at i:98362263 original size:19 final size:18
Alignment explanation
Indices: 98362196--98362329 Score: 78
Period size: 19 Copynumber: 7.2 Consensus size: 18
98362186 GACACAAATT
*
98362196 AAAATTATAAAA-ACTTATA
1 AAAATTATAAAATA--TAAA
*
98362215 AATATTATAAAA-ATAAA
1 AAAATTATAAAATATAAA
*
98362232 AAAAATA-ACAAATCATAAA
1 AAAATTATA-AAAT-ATAAA
98362251 AAAATTATAAAATTAATAAA
1 AAAATTATAAAA-T-ATAAA
* **
98362271 AAATATT-TAAAATTTTATG
1 AAA-ATTATAAAA-TATAAA
*
98362290 AAAATCATAAAATATAAA
1 AAAATTATAAAATATAAA
* *
98362308 AAATTTATAAATTTATAAA
1 AAAATTATAAA-ATATAAA
98362327 AAA
1 AAA
98362330 TGATAAAAAC
Statistics
Matches: 91, Mismatches: 16, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
16 1 0.01
17 11 0.12
18 14 0.15
19 45 0.49
20 17 0.19
21 3 0.03
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.31
Consensus pattern (18 bp):
AAAATTATAAAATATAAA
Found at i:98362329 original size:28 final size:27
Alignment explanation
Indices: 98362249--98362430 Score: 95
Period size: 28 Copynumber: 6.5 Consensus size: 27
98362239 ACAAATCATA
* *
98362249 AAAAAATTATAAAATTAATAAAAAATATTT
1 AAAAATTTAT-AAATTTATAAAAAATA--T
* * * *
98362279 AAAATTTTATGAAAATCATAAAATATA-
1 AAAAATTTAT-AAATTTATAAAAAATAT
98362306 AAAAATTTATAAATTTATAAAAAATGAT
1 AAAAATTTATAAATTTATAAAAAAT-AT
** *
98362334 AAAAACCTATAAATACTAT-AAAAATAAT
1 AAAAATTTATAAAT-TTATAAAAAAT-AT
* *
98362362 AAAATAATTA-AAATTTTGTAAAAACA-AT
1 AAAA-ATTTATAAA-TTTATAAAAA-ATAT
* * *
98362390 AAAAATTCATAAGAACTTATAAATAATAT
1 AAAAATTTAT-A-AATTTATAAAAAATAT
98362419 AAAAA-TTATAAA
1 AAAAATTTATAAA
98362431 AAGTCATTTA
Statistics
Matches: 117, Mismatches: 24, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
26 14 0.12
27 14 0.12
28 39 0.33
29 26 0.22
30 24 0.21
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (27 bp):
AAAAATTTATAAATTTATAAAAAATAT
Found at i:98362421 original size:9 final size:9
Alignment explanation
Indices: 98362196--98362432 Score: 87
Period size: 9 Copynumber: 25.4 Consensus size: 9
98362186 GACACAAATT
98362196 AAAATTATA
1 AAAATTATA
98362205 AAAACTTATA
1 AAAA-TTATA
*
98362215 AATATTATA
1 AAAATTATA
98362224 AAAA-TA-A
1 AAAATTATA
*
98362231 AAAA-AATA
1 AAAATTATA
*
98362239 ACAAATCATAAA
1 A-AAAT--TATA
98362251 AAAATTAT-
1 AAAATTATA
98362259 AAAATTAATAA
1 AAAATT-AT-A
*
98362270 AAAATATTTA
1 AAAAT-TATA
* *
98362280 AAATTTTATG
1 AAA-ATTATA
*
98362290 AAAATCAT-
1 AAAATTATA
98362298 AAAA-TATAA
1 AAAATTAT-A
98362307 AAAATT-TA
1 AAAATTATA
*
98362315 TAAATTTATAA
1 -AAAATTAT-A
*
98362326 AAAATGATA
1 AAAATTATA
*
98362335 AAAACCTATA
1 AAAA-TTATA
* *
98362345 AATACTATA
1 AAAATTATA
*
98362354 AAAATAATAA
1 AAAATTAT-A
98362364 AATAATTA-A
1 AA-AATTATA
** *
98362373 AATTTTGTA
1 AAAATTATA
**
98362382 AAAACAATA
1 AAAATTATA
98362391 AAAATTCATA
1 AAAATT-ATA
*
98362401 AGAACTTATA
1 A-AAATTATA
98362411 AATAA-TATA
1 AA-AATTATA
98362420 AAAATTATA
1 AAAATTATA
98362429 AAAA
1 AAAA
98362433 GTCATTTAAT
Statistics
Matches: 168, Mismatches: 35, Indels: 50
0.66 0.14 0.20
Matches are distributed among these distances:
7 8 0.05
8 19 0.11
9 74 0.44
10 43 0.26
11 20 0.12
12 4 0.02
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (9 bp):
AAAATTATA
Found at i:98363027 original size:11 final size:11
Alignment explanation
Indices: 98363011--98363039 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
98363001 TGGTCCAGTT
98363011 TAATTTTTTAA
1 TAATTTTTTAA
98363022 TAATTTTTTAA
1 TAATTTTTTAA
98363033 TAATTTT
1 TAATTTT
98363040 ATATGTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TAATTTTTTAA
Found at i:98363096 original size:19 final size:19
Alignment explanation
Indices: 98363074--98363118 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
98363064 TTTTGAATCA
**
98363074 TTTTTATGTTTTTTATAAG
1 TTTTTATGAATTTTATAAG
* *
98363093 TTTTTAAGAATTTTATATG
1 TTTTTATGAATTTTATAAG
98363112 TTTTTAT
1 TTTTTAT
98363119 AAAATTTTAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (19 bp):
TTTTTATGAATTTTATAAG
Found at i:98363126 original size:29 final size:29
Alignment explanation
Indices: 98363064--98363146 Score: 80
Period size: 29 Copynumber: 2.8 Consensus size: 29
98363054 ATTTTAATAT
* **
98363064 TTTTGAATCATTTT-TATGTTTTTTATAAGT
1 TTTTAAAT-ATTTTATATG-TTTTTATAAAA
98363094 TTTTAAGA-ATTTTATATGTTTTTATAAAA
1 TTTTAA-ATATTTTATATGTTTTTATAAAA
98363123 TTTTAAATATTTTAAATATGTTTT
1 TTTTAAATATTTT--ATATGTTTT
98363147 AGTTATTTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
28 1 0.02
29 25 0.56
30 9 0.20
31 10 0.22
ACGTcount: A:0.31, C:0.01, G:0.07, T:0.60
Consensus pattern (29 bp):
TTTTAAATATTTTATATGTTTTTATAAAA
Done.