Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 301 of 343
Found at i:98363241 original size:27 final size:25
Alignment explanation
Indices: 98363189--98363266 Score: 79
Period size: 25 Copynumber: 3.0 Consensus size: 25
98363179 GTTTATTAAG
98363189 TTTTTATTTTATAATATTTATAATT
1 TTTTTATTTTATAATATTTATAATT
* *
98363214 TTTTTATCTTATATAA-ATTTCT-ATA
1 TTTTTAT-TT-TATAATATTTATAATT
*
98363239 TTTTTATATTTAGTAATTTTTATAATT
1 TTTTTAT-TTTA-TAATATTTATAATT
98363266 T
1 T
98363267 AAATAGTCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
24 2 0.05
25 21 0.50
26 11 0.26
27 8 0.19
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (25 bp):
TTTTTATTTTATAATATTTATAATT
Found at i:98363266 original size:25 final size:24
Alignment explanation
Indices: 98363180--98363266 Score: 70
Period size: 25 Copynumber: 3.4 Consensus size: 24
98363170 TTATTTCGAG
*
98363180 TTTATTAAGTTTTTAT-TTTATAATA
1 TTTA-TAA-TTTTTATATTTATAATT
*
98363205 TTTATAATTTTTTTATCTTATATAAATT
1 TTTATAA--TTTTTATATT-TAT-AATT
*
98363233 TCTAT-ATTTTTATATTTAGTAATT
1 TTTATAATTTTTATATTTA-TAATT
98363257 TTTATAATTT
1 TTTATAATTT
98363267 AAATAGTCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
24 13 0.25
25 25 0.49
26 2 0.04
27 4 0.08
28 7 0.14
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (24 bp):
TTTATAATTTTTATATTTATAATT
Found at i:98365729 original size:16 final size:17
Alignment explanation
Indices: 98365697--98365729 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
98365687 TTTATAAGTA
*
98365697 TATATCAATCGTTTCAT
1 TATATCAATCATTTCAT
98365714 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
98365730 GTTTCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:98366172 original size:92 final size:92
Alignment explanation
Indices: 98366015--98366235 Score: 361
Period size: 92 Copynumber: 2.4 Consensus size: 92
98366005 TTTAACATGA
* * * * *
98366015 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
* *
98366080 CATGGTCTTATTCTTTTCATGTCACGT
66 CATGGTCTTATTCGTTTCATATCACGT
*
98366107 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
98366172 CATGGTCTTATTCGTTTCATATCACGT
66 CATGGTCTTATTCGTTTCATATCACGT
*
98366199 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTC
98366236 ATATCAGAGA
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 119 1.00
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCGTTTCATATCACGT
Found at i:98366241 original size:46 final size:46
Alignment explanation
Indices: 98366015--98366237 Score: 313
Period size: 46 Copynumber: 4.8 Consensus size: 46
98366005 TTTAACATGA
* * * * *
98366015 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGTCACGT
*
98366061 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
** *
98366107 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* *
98366153 TGCCATGGTATCTTTCAACCATGGTCTTATTCGTTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
**
98366199 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
98366238 ATCAGAGAGC
Statistics
Matches: 158, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.03
46 154 0.97
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
Found at i:98371350 original size:40 final size:40
Alignment explanation
Indices: 98371306--98371384 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
98371296 CCTCTTTGAC
* * *
98371306 CTTTAATCTTTAACCTTATAAATTTAGACGAATTGTTGTA
1 CTTTAATATTTAACCTTACAAATTTAGACAAATTGTTGTA
* *
98371346 CTTTAATATTTAACCTTACAAATTTGGTCAAATTGTTGT
1 CTTTAATATTTAACCTTACAAATTTAGACAAATTGTTGT
98371385 TTATTGTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.46
Consensus pattern (40 bp):
CTTTAATATTTAACCTTACAAATTTAGACAAATTGTTGTA
Found at i:98374589 original size:3 final size:3
Alignment explanation
Indices: 98374573--98374694 Score: 65
Period size: 3 Copynumber: 40.3 Consensus size: 3
98374563 CATATATGAA
* * * *
98374573 AAT AAT AGT GAT AAT AAT AAT AAT -AT ATT AGAT AA- AAT AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
* * ** *
98374617 AA- AAGT AGT AAT AAG AAT GGT AA- AAG AA- AAT AAT AAT AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
98374660 AAT GAAGGT AAT AAT AAT AAT GAT AAT AAAT AAT A
1 AAT -AA--T AAT AAT AAT AAT AAT AAT -AAT AAT A
98374695 GTAAAAAGAA
Statistics
Matches: 91, Mismatches: 17, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
2 10 0.11
3 70 0.77
4 8 0.09
5 2 0.02
6 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.11, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:98376093 original size:45 final size:45
Alignment explanation
Indices: 98376030--98376917 Score: 617
Period size: 45 Copynumber: 19.9 Consensus size: 45
98376020 GACTTGTAGT
* * *
98376030 TTCAATCTGCTCCA--GCAACTTCAGGGAAATAAGGTTTGTTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * * * *
98376073 TTCGATCTACTCCACTGCAACTTCAGGGAGTTGAGATTCG-TAAC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * * *
98376117 TTCAACCTGCTCCAATGCAACTTCAGGAAGATAAGGTTTG-TAAC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * * * * *
98376161 TTCAACCTACTCCACTGTATCTTCAGGGGGATAAGGTTT-ATAGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * *
98376205 TTTAACTCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATC
1 TTCAA-TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * * * * * *
98376251 TTCGAT-TCGCTCTACTGCAAATTCAAGGAGATAGGA-CTCATAAC
1 TTCAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * * * *
98376295 TTCAACCTGCTCTACTGTAACTTCAGGGTGATAAGGTTT-ATAGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * * *
98376339 TTTAACTCTACTCTACTGCAACTTCAGAGAGATAAGATTTGCTATC
1 TTCAA-TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * * * * * * *
98376385 TTCGAT-TCACTCCACTGTAACTTCAAGAAGATAGGACTCG-TAAC
1 TTCAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * * *
98376429 TTCAACCTGCCCCACTGCAACTTCAGGGGGATAAGGTTTGTGATTTGTAGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-GATT-TGA----TATC
* * * *
98376480 TTAAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTCGCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* *
98376525 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAAT-
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGAT-ATC
* * * ** *
98376569 TTCAACCTGCTCCACTGTAACTTCAGAGAGATAAGATCAGTTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * *
98376614 TTCAGTCTGCTCCTCTACAACTTCAGGGAGATAAGATTTGCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * * *
98376659 TTCAGTCTACTCCACTACAACTTCAGAGAGATAAGACTTG-TAAT-
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGAT-ATC
* *
98376703 TTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-T-T-
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * ** *
98376745 TT-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCAGATGTC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * * * * *
98376789 TTCAGTCTGCTCCTCTACAACTTTAGGGAGATAAGACTCGCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * * **
98376834 TTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGGTTT-ATGGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
* * *
98376878 TTTAATCTACTCCACTGTAACTTCAGGGAGATAAGATTTG
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
98376918 CCGTGGTAGA
Statistics
Matches: 657, Mismatches: 160, Indels: 54
0.75 0.18 0.06
Matches are distributed among these distances:
41 30 0.05
42 4 0.01
43 13 0.02
44 254 0.39
45 305 0.46
46 13 0.02
49 1 0.00
50 3 0.00
51 34 0.05
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (45 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATATC
Found at i:98376139 original size:44 final size:44
Alignment explanation
Indices: 98376044--98377094 Score: 452
Period size: 44 Copynumber: 23.5 Consensus size: 44
98376034 ATCTGCTCCA
* * * * * *
98376044 GCAACTTCAGGGAAATAAGGTTTGTTATCTTCGATCTACTCCACT
1 GCAACTTCAGGGAGATAAGATTCG-TAACTTCAACCTACTCCACT
* * * *
98376089 GCAACTTCAGGGAGTTGAGATTCGTAACTTCAACCTGCTCCAAT
1 GCAACTTCAGGGAGATAAGATTCGTAACTTCAACCTACTCCACT
* * *
98376133 GCAACTTCAGGAAGATAAGGTTTGTAACTTCAACCTACTCCACT
1 GCAACTTCAGGGAGATAAGATTCGTAACTTCAACCTACTCCACT
* * * * ** * * * *
98376177 GTATCTTCAGGGGGATAAGGTTTATAGCTTTAACTCTGCTCTACT
1 GCAACTTCAGGGAGATAAGATTCGTAACTTCAAC-CTACTCCACT
* * * * * * *
98376222 GCAACTTCAGAGAGATAAGATTTGCTATCTTCGA-TTCGCTCTACT
1 GCAACTTCAGGGAGATAAGATTCG-TAACTTCAACCT-ACTCCACT
* * * * * * *
98376267 GCAAATTCAAGGAGATAGGACTCATAACTTCAACCTGCTCTACT
1 GCAACTTCAGGGAGATAAGATTCGTAACTTCAACCTACTCCACT
* * * ** * * *
98376311 GTAACTTCAGGGTGATAAGGTTTATAGCTTTAACTCTACTCTACT
1 GCAACTTCAGGGAGATAAGATTCGTAACTTCAAC-CTACTCCACT
* * * * *
98376356 GCAACTTCAGAGAGATAAGATTTGCTATCTTCGA-TTCACTCCACT
1 GCAACTTCAGGGAGATAAGATTCG-TAACTTCAACCT-ACTCCACT
* * * * * * *
98376401 GTAACTTCAAGAAGATAGGACTCGTAACTTCAACCTGCCCCACT
1 GCAACTTCAGGGAGATAAGATTCGTAACTTCAACCTACTCCACT
* * * * * * *
98376445 GCAACTTCAGGGGGATAAGGTTTGTGATTTGTAGCTTAAATCTGCCCCACT
1 GCAACTTCAGGGAGATAA-------GATTCGTAACTTCAACCTACTCCACT
* ** *
98376496 GCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCTCCACT
1 GCAACTTCAGGGAGATAAGATTCG-TAACTTCAACCTACTCCACT
* *
98376541 GCAACTTCAGGGAGATAAGACTT-GTAATTTCAACCTGCTCCACT
1 GCAACTTCAGGGAGATAAGA-TTCGTAACTTCAACCTACTCCACT
* * * ** * *
98376585 GTAACTTCAGAGAGATAAGA-TCAGTTATCTTCAGTCTGCTCCTCT
1 GCAACTTCAGGGAGATAAGATTC-G-TAACTTCAACCTACTCCACT
* * * **
98376630 ACAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTACTCCACT
1 GCAACTTCAGGGAGATAAGATTCG-TAACTTCAACCTACTCCACT
* * * *
98376675 ACAACTTCAGAGAGATAAGACTT-GTAATTTCAACCTGCTCCACT
1 GCAACTTCAGGGAGATAAGA-TTCGTAACTTCAACCTACTCCACT
* * ** * * *
98376719 GCAACTTCAGGGAGATAAGGTTTGT---TTTGATCTGCTCTACT
1 GCAACTTCAGGGAGATAAGATTCGTAACTTCAACCTACTCCACT
* ** ** * *
98376760 GCAACTTCAGAGAGATAAGA-TCAGATGTCTTCAGTCTGCTCCTCT
1 GCAACTTCAGGGAGATAAGATTC-G-TAACTTCAACCTACTCCACT
* * * * **
98376805 ACAACTTTAGGGAGATAAGACTCGCTATCTTCAGTCTACTCCACT
1 GCAACTTCAGGGAGATAAGATTCG-TAACTTCAACCTACTCCACT
* ** ** * *
98376850 GCAACTTCAGGGAGATAAGGTTTATGGCTTTAATCTACTCCACT
1 GCAACTTCAGGGAGATAAGATTCGTAACTTCAACCTACTCCACT
* * * * * *
98376894 GTAACTTCAGGGAGATAAGATTTGCCGTGGTAGATTTGATCCGAC-CTACT
1 GCAACTTCAGGGAGATAAGA-TT--C---GTA-ACTTCAACCTACTCCACT
* * * * * *** * * *
98376944 ACAACTTCAAAGG-TATAGGACTCGTCGTTTTAATCTGCTCCACT
1 GCAACTTC-AGGGAGATAAGATTCGTAACTTCAACCTACTCCACT
* * * * * *
98376988 GCAACTTCA-GGAGATAGGATTAGTAGCTTCAATCTATTCCGCT
1 GCAACTTCAGGGAGATAAGATTCGTAACTTCAACCTACTCCACT
* * * * **
98377031 GTAACTTCAGGCAGATAAGATTGGTATCTTCAGTCTACTCCACT
1 GCAACTTCAGGGAGATAAGATTCGTAACTTCAACCTACTCCACT
*
98377075 GCAACTTTAGGGAGATAAGA
1 GCAACTTCAGGGAGATAAGA
98377095 CTTGTAATTT
Statistics
Matches: 768, Mismatches: 198, Indels: 81
0.73 0.19 0.08
Matches are distributed among these distances:
40 1 0.00
41 31 0.04
42 4 0.01
43 39 0.05
44 311 0.40
45 298 0.39
46 19 0.02
47 1 0.00
49 1 0.00
50 16 0.02
51 47 0.06
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
GCAACTTCAGGGAGATAAGATTCGTAACTTCAACCTACTCCACT
Found at i:98376216 original size:89 final size:90
Alignment explanation
Indices: 98376030--98376915 Score: 336
Period size: 89 Copynumber: 9.9 Consensus size: 90
98376020 GACTTGTAGT
* * *
98376030 TTCAA-TCTGCTCC-A-GCAACTTCAGGGAA-ATAAGGTTTGTTATCTTCGATCTACTCCACTGC
1 TTCAACTCTGCTCCAATGCAACTTCA-GGAAGATAAGGTTTGTTAACTTCAACCTACTCCACTGC
* * *
98376091 AACTTCAGGGAGTTGAGATTCGTAAC
65 AACTTCAGGGAGATAAGATTCATAAC
*
98376117 TTCAAC-CTGCTCCAATGCAACTTCAGGAAGATAAGGTTTG-TAACTTCAACCTACTCCACTGTA
1 TTCAACTCTGCTCCAATGCAACTTCAGGAAGATAAGGTTTGTTAACTTCAACCTACTCCACTGCA
* * * * *
98376180 TCTTCAGGGGGATAAGGTTTATAGC
66 ACTTCAGGGAGATAAGATTCATAAC
* * * * * * * * * *
98376205 TTTAACTCTGCTCTACTGCAACTTCA-GAGAGATAAGATTTGCTATCTTCGA-TTCGCTCTACTG
1 TTCAACTCTGCTCCAATGCAACTTCAGGA-AGATAAGGTTTGTTAACTTCAACCT-ACTCCACTG
* * * *
98376268 CAAATTCAAGGAGATAGGACTCATAAC
64 CAACTTCAGGGAGATAAGATTCATAAC
* * * ** * * * *
98376295 TTCAAC-CTGCTCTACTGTAACTTCAGGGTGATAAGGTTT-ATAGCTTTAACTCTACTCTACTGC
1 TTCAACTCTGCTCCAATGCAACTTCAGGAAGATAAGGTTTGTTAACTTCAAC-CTACTCCACTGC
* *
98376358 AACTTCAGAGAGATAAGATTTGC-TATC
65 AACTTCAGGGAGATAAGA-TT-CATAAC
* * * * * * * * * *
98376385 TTCGATTC-ACTCCACTGTAACTTCAAGAAGAT-AGGACTCG-TAACTTCAACCTGCCCCACTGC
1 TTCAACTCTGCTCCAATGCAACTTCAGGAAGATAAGG-TTTGTTAACTTCAACCTACTCCACTGC
* ** *
98376447 AACTTCAGGGGGATAAGGTTTGTGATTTGTAGC
65 AACTTCAGGGAGATAA-------GATTCATAAC
* * * * * * * * ** *
98376480 TT-AAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCTCCACTGCA
1 TTCAACTCTGCTCCAATGCAACTTCAGGAAGATAAGGTTTGTTAACTTCAACCTACTCCACTGCA
* *
98376544 ACTTCAGGGAGATAAGACTT-GTAAT
66 ACTTCAGGGAGATAAGA-TTCATAAC
* * * ** * ** * * *
98376569 TTCAAC-CTGCTCCACTGTAACTTCA-GAGAGATAAGATCAGTTATCTTCAGTCTGCTCCTCTAC
1 TTCAACTCTGCTCCAATGCAACTTCAGGA-AGATAAGGTTTGTTAACTTCAACCTACTCCACTGC
*
98376632 AACTTCAGGGAGATAAGATTTGC-TATC
65 AACTTCAGGGAGATAAGA-TT-CATAAC
* * * * ** * *
98376659 TTC-AGTCTACTCCACTACAACTTCA-GAGAGATAAGACTTG-TAATTTCAACCTGCTCCACTGC
1 TTCAACTCTGCTCCAATGCAACTTCAGGA-AGATAAGGTTTGTTAACTTCAACCTACTCCACTGC
* **
98376721 AACTTCAGGGAGATAAGGTT--T-GT
65 AACTTCAGGGAGATAAGATTCATAAC
** * * * ** * ** ** * * *
98376744 TTTGA-TCTGCTCTACTGCAACTTCA-GAGAGATAAGATCAGATGTCTTCAGTCTGCTCCTCTAC
1 TTCAACTCTGCTCCAATGCAACTTCAGGA-AGATAAGGTTTGTTAACTTCAACCTACTCCACTGC
* * * *
98376807 AACTTTAGGGAGATAAGACTCGCTATC
65 AACTTCAGGGAGATAAGATTC-ATAAC
* * * * * ** * * *
98376834 TTC-AGTCTACTCCACTGCAACTTCAGGGAGATAAGGTTT-ATGGCTTTAATCTACTCCACTGTA
1 TTCAACTCTGCTCCAATGCAACTTCAGGAAGATAAGGTTTGTTAACTTCAACCTACTCCACTGCA
98376897 ACTTCAGGGAGATAAGATT
66 ACTTCAGGGAGATAAGATT
98376916 TGCCGTGGTA
Statistics
Matches: 613, Mismatches: 145, Indels: 80
0.73 0.17 0.10
Matches are distributed among these distances:
85 31 0.05
86 34 0.06
87 12 0.02
88 57 0.09
89 268 0.44
90 139 0.23
91 3 0.00
94 3 0.00
95 29 0.05
96 37 0.06
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (90 bp):
TTCAACTCTGCTCCAATGCAACTTCAGGAAGATAAGGTTTGTTAACTTCAACCTACTCCACTGCA
ACTTCAGGGAGATAAGATTCATAAC
Found at i:98376321 original size:134 final size:133
Alignment explanation
Indices: 98376016--98377101 Score: 833
Period size: 134 Copynumber: 8.1 Consensus size: 133
98376006 ACTCAGAGAT
* ** * * * * **
98376016 ATAAGACTTGTAGTTTCAATCTGCTCCA--GCAACTTCAGGGAAATAAGGTTTGTTATCTTCGAT
1 ATAAGACTCGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTT-ATAGCTTTAAT
* * * * * * * ** *
98376079 CTACTCCACTGCAACTTCAGGGAGTTGAGATTCG-TAACTTCAACCTGCTCCAATGCAACTTC-A
65 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
98376142 GGAAG
130 GG-AG
** * * * * *
98376147 ATAAGGTTTGTAACTTCAACCTACTCCACTGTATCTTCAGGGGGATAAGGTTTATAGCTTTAACT
1 ATAAGACTCGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAA-T
* * *
98376212 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCGATTC-GCTCTACTGCAAATTCA
65 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTC-AGTCTGCTCCACTGCAACTTCA
98376276 AGGAG
129 AGGAG
* * * * *
98376281 ATAGGACTCATAACTTCAACCTGCTCTACTGTAACTTCAGGGTGATAAGGTTTATAGCTTTAACT
1 ATAAGACTCGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAA-T
* * * *
98376346 CTACTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCGATTC-ACTCCACTGTAACTTCA
65 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTC-AGTCTGCTCCACTGCAACTTCA
*
98376410 AGAAG
129 AGGAG
* * *
98376415 ATAGGACTCGTAACTTCAACCTGCCCCACTGCAACTTCAGGGGGATAAGGTTTGTGATTTGTAGC
1 ATAAGACTCGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG-TT-T-A----TAGC
* * * * *
98376480 TTAAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAA
59 TTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAA
*
98376545 CTTCAGGGAG
124 CTTCAAGGAG
* * * * * *
98376555 ATAAGACTTGTAATTTCAACCTGCTCCACTGTAACTTCAGAGAGATAAGATCAGTTAT--CTTCA
1 ATAAGACTCGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGT---TTATAGCTTTA
* * * * *
98376618 GTCTGCTCCT-CTACAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTACTCCACTACAACTT
63 ATCTGCT-CTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTT
98376682 C-AGAGAG
127 CAAG-GAG
* * * *
98376689 ATAAGACTTGTAATTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG-TT-T-GTTTTGATC
1 ATAAGACTCGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAATC
** * * * * * *
98376751 TGCTCTACTGCAACTTCAGAGAGATAAGATCAGATGTCTTCAGTCTGCTCCTCTACAACTTTAGG
66 TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAAG
98376816 GAG
131 GAG
* ** * *
98376819 ATAAGACTCGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGGTTTATGGCTTTAAT
1 ATAAGACTCG-TAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAAT
* * * * ** ** * * *
98376884 CTACTCCACTGTAACTTCAGGGAGATAAGATTTGCCGTGGT-AGATTTGATCCGACCTACTACAA
65 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAG-TCTG---C-TCC-ACTGCAA
*
98376948 CTTCAAAGG-T
124 CTTC-AAGGAG
* *** * * * *
98376958 ATAGGACTCGTCGTTTTAATCTGCTCCACTGCAACTTCA-GGAGAT-AGGATTAGTAGCTTCAAT
1 ATAAGACTCGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTA-TAGCTTTAAT
** ** * * * *
98377021 CTATTCCGCTGTAACTTCAG-GCAGATAAGA-TTGGTATCTTCAGTCTACTCCACTGCAACTTTA
65 CTGCTCTACTGCAACTTCAGAG-AGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCA
*
98377084 GGGAG
129 AGGAG
*
98377089 ATAAGACTTGTAA
1 ATAAGACTCGTAA
98377102 TTTGTAGCTT
Statistics
Matches: 775, Mismatches: 143, Indels: 74
0.78 0.14 0.07
Matches are distributed among these distances:
129 3 0.00
130 71 0.09
131 76 0.10
132 10 0.01
133 53 0.07
134 335 0.43
135 8 0.01
136 16 0.02
137 44 0.06
138 25 0.03
139 22 0.03
140 102 0.13
141 9 0.01
142 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (133 bp):
ATAAGACTCGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAATC
TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAAG
GAG
Found at i:98376557 original size:274 final size:269
Alignment explanation
Indices: 98376030--98376918 Score: 868
Period size: 274 Copynumber: 3.3 Consensus size: 269
98376020 GACTTGTAGT
* * * ** *
98376030 TTCAATCTGCTCCA--GCAACTTCAGGGAAATAAGGTTTGTTAT-CTTCGATCTACTCCACTGCA
1 TTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGG--T-TTATGCTTTAATCTACTCTACTGCA
* * * * ** * * * **
98376092 ACTTCAGGGAGTTGAGATTCG-TAACTTCAACCTGCTCCAATGCAACTTCAG-GAAGATAAGGTT
63 ACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTACTCCACTACAACTTCAGAG-AGATAAGACT
* * * * *
98376155 TGTAACTTCAACCTACTCCACTGTATCTTCAGGGGGATAAGGTTT-A---TAGCTTTAACTCTGC
127 CGTAACTTCAACCTGCTCCACTGCAACTTCAGGGGGATAAGGTTTGATTTTAGC-TTAAATCTGC
* * * * *
98376216 TCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCGATTC-GCTCTACTGCAAATTCAAGGA
191 TCTACTGCAACTTCAGAGAGATAAGATTCGCTATCTTC-AGTCTGCTCCACTGCAACTTCAGGGA
*
98376280 GATAGGACTCATAAC
255 GATAAGACTCATAAC
* *
98376295 TTCAACCTGCTCTACTGTAACTTCAGGGTGATAAGGTTTATAGCTTTAACTCTACTCTACTGCAA
1 TTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTAT-GCTTTAA-TCTACTCTACTGCAA
* * ** *
98376360 CTTCAGAGAGATAAGATTTGCTATCTTCGATTC-ACTCCACTGTAACTTCA-AGAAGATAGGACT
64 CTTCAGGGAGATAAGATTTGCTATCTTC-AGTCTACTCCACTACAACTTCAGAG-AGATAAGACT
*
98376423 CGTAACTTCAACCTGCCCCACTGCAACTTCAGGGGGATAAGGTTTGTGATTTGTAGCTTAAATCT
127 CGTAACTTCAACCTGCTCCACTGCAACTTCAGGGGGATAAGG-TT-TGATTT-TAGCTTAAATCT
* * *
98376488 GCCCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGG
189 GCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGG
** *
98376553 AGATAAGACTTGTAAT
254 AGATAAGACTCATAAC
* * * * * *
98376569 TTCAACCTGCTCCACTGTAACTTCAGAGAGATAAGATCAGTTAT-CTTCAGTCTGCTCCT-CTAC
1 TTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGT---TTATGCTTTAATCTACT-CTACTGC
98376632 AACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTACTCCACTACAACTTCAGAGAGATAAGACT
62 AACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTACTCCACTACAACTTCAGAGAGATAAGACT
* * *
98376697 TGTAATTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TTTT-G-----ATCTGCT
127 CGTAACTTCAACCTGCTCCACTGCAACTTCAGGGGGATAAGGTTTGATTTTAGCTTAAATCTGCT
* * * * *
98376755 CTACTGCAACTTCAGAGAGATAAGA-TCAGATGTCTTCAGTCTGCTCCTCTACAACTTTAGGGAG
192 CTACTGCAACTTCAGAGAGATAAGATTC-GCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
* *
98376819 ATAAGACTCGCTATC
256 ATAAGACTC-ATAAC
** * * * *
98376834 TTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGGTTTATGGCTTTAATCTACTCCACTGTAAC
1 TTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTAT-GCTTTAATCTACTCTACTGCAAC
98376899 TTCAGGGAGATAAGATTTGC
65 TTCAGGGAGATAAGATTTGC
98376919 CGTGGTAGAT
Statistics
Matches: 517, Mismatches: 80, Indels: 55
0.79 0.12 0.08
Matches are distributed among these distances:
262 4 0.01
263 3 0.01
264 106 0.21
265 46 0.09
266 4 0.01
267 47 0.09
268 66 0.13
269 5 0.01
270 2 0.00
271 4 0.01
272 2 0.00
273 8 0.02
274 204 0.39
275 12 0.02
277 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (269 bp):
TTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTATGCTTTAATCTACTCTACTGCAACT
TCAGGGAGATAAGATTTGCTATCTTCAGTCTACTCCACTACAACTTCAGAGAGATAAGACTCGTA
ACTTCAACCTGCTCCACTGCAACTTCAGGGGGATAAGGTTTGATTTTAGCTTAAATCTGCTCTAC
TGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAG
ACTCATAAC
Found at i:98376793 original size:175 final size:175
Alignment explanation
Indices: 98376491--98376917 Score: 581
Period size: 175 Copynumber: 2.4 Consensus size: 175
98376481 TAAATCTGCC
*
98376491 CCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGA
1 CCACTGCAACTTCAGGGAGATAAGATT-G-TAT-TTCAATCTGCTCCACTGCAACTTCAGGGAGA
* * *
98376556 TAAGACTTGTAATTTCAACCTGCTCCACTGTAACTTCAGAGAGATAAGATCAGTTATCTTCAGTC
63 TAAGATTTGT-ATTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGATCAGATATCTTCAGTC
* *
98376621 TGCTCCTCTACAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTACT
127 TGCTCCTCTACAACTTCAGGGAGATAAGACTCGCTATCTTCAGTCTACT
* * *
98376670 CCACTACAACTTCAGAGAGATAAGACTTGTAATTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAGGGAGATAAGA-TTGT-ATTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * * * *
98376735 AAGGTTTGT-TTT-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCAGATGTCTTCAGTCTG
64 AAGATTTGTATTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGATCAGATATCTTCAGTCTG
*
98376798 CTCCTCTACAACTTTAGGGAGATAAGACTCGCTATCTTCAGTCTACT
129 CTCCTCTACAACTTCAGGGAGATAAGACTCGCTATCTTCAGTCTACT
* * * *
98376845 CCACTGCAACTTCAGGGAGATAAGGTT-TATGGCTTTAATCTACTCCACTGTAACTTCAGGGAGA
1 CCACTGCAACTTCAGGGAGATAAGATTGTAT---TTCAATCTGCTCCACTGCAACTTCAGGGAGA
98376909 TAAGATTTG
63 TAAGATTTG
98376918 CCGTGGTAGA
Statistics
Matches: 220, Mismatches: 23, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
172 2 0.01
173 1 0.00
174 2 0.01
175 146 0.66
176 3 0.01
178 38 0.17
179 26 0.12
180 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (175 bp):
CCACTGCAACTTCAGGGAGATAAGATTGTATTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
GATTTGTATTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGATCAGATATCTTCAGTCTGCT
CCTCTACAACTTCAGGGAGATAAGACTCGCTATCTTCAGTCTACT
Found at i:98386441 original size:19 final size:20
Alignment explanation
Indices: 98386419--98386464 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
98386409 GGTCTTTTCG
* *
98386419 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCAAATGAA
98386438 TGAAATGTAATGCAAATGAA
1 TGAAATGTAATGCAAATGAA
98386458 TGAAATG
1 TGAAATG
98386465 AATACAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.46, C:0.04, G:0.20, T:0.30
Consensus pattern (20 bp):
TGAAATGTAATGCAAATGAA
Found at i:98390839 original size:6 final size:6
Alignment explanation
Indices: 98390822--98390871 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
98390812 GAAATAACAT
* * *
98390822 TAAAAGA TAAAAA TAAAAT TAATAA -AAACA T-AAAA TAAAAA TAAAAA
1 TAAAA-A TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
98390869 TAA
1 TAA
98390872 GATAAAATTA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
5 7 0.20
6 23 0.66
7 5 0.14
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:98390856 original size:22 final size:22
Alignment explanation
Indices: 98390831--98390879 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
98390821 TTAAAAGATA
*
98390831 AAAATAAAATTAATAAA-AACAT
1 AAAATAAAAATAA-AAATAACAT
*
98390853 AAAATAAAAATAAAAATAAGAT
1 AAAATAAAAATAAAAATAACAT
98390875 AAAAT
1 AAAAT
98390880 TAAGTATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (22 bp):
AAAATAAAAATAAAAATAACAT
Found at i:98390871 original size:17 final size:17
Alignment explanation
Indices: 98390822--98390878 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
98390812 GAAATAACAT
98390822 TAAAAGATAAAAATAAAA
1 TAAAA-ATAAAAATAAAA
* *
98390840 TTAATAA-AAACATAAAA
1 -TAAAAATAAAAATAAAA
*
98390857 TAAAAATAAAAATAAGA
1 TAAAAATAAAAATAAAA
98390874 TAAAA
1 TAAAA
98390879 TTAAGTATCA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
16 5 0.16
17 22 0.69
18 1 0.03
19 4 0.12
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.19
Consensus pattern (17 bp):
TAAAAATAAAAATAAAA
Found at i:98399828 original size:3 final size:3
Alignment explanation
Indices: 98399820--98400136 Score: 154
Period size: 3 Copynumber: 105.3 Consensus size: 3
98399810 CATATATGAA
* * * *
98399820 AAT AAT AAT AAT -AT GAC AAT AAT AAT AAT AAT AAT AAT AGT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
98399867 AAT AAT AAAT AATT AAT GAT AAT AAA AAT AAT AGT AA- AGAA AAT AA-
1 AAT AAT -AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * * * * *
98399913 AGAT AAG ATT AAT AAT GAT ACT AACG AAT -AT AAGT AAT AAT AGT AA-
1 A-AT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AA-T AAT AAT AAT AAT
* ** ** *
98399959 AAA AAT AAT AAT AAT GGT AAT AAT AAT AAT AAT AAT -AT GTT GAGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * * * *
98400004 TAT AAT AGT AA- AAT AAT AAT AAT AGT GAT AAT AAT -AT ATT AGAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * * * *
98400048 AA- AAT AAT AAC AA- AAGT AGT AAT AAG AAT GAT AA- AAG AA- AAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
98400090 AAT AAT AAT AAT AAT GAAGGT AAT AAT AAT AAT GAT AAT AAAT AAT A
1 AAT AAT AAT AAT AAT -AA--T AAT AAT AAT AAT AAT AAT -AAT AAT A
98400137 GTAAAAAGAA
Statistics
Matches: 235, Mismatches: 54, Indels: 50
0.69 0.16 0.15
Matches are distributed among these distances:
2 22 0.09
3 188 0.80
4 22 0.09
5 2 0.01
6 1 0.00
ACGTcount: A:0.60, C:0.01, G:0.09, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:98399833 original size:17 final size:17
Alignment explanation
Indices: 98399813--98399849 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
98399803 AATAAAACAT
98399813 ATATGAAAATAATAATA
1 ATATGAAAATAATAATA
*
98399830 ATATGACAATAATAATA
1 ATATGAAAATAATAATA
98399847 ATA
1 ATA
98399850 ATAATAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (17 bp):
ATATGAAAATAATAATA
Found at i:98400071 original size:35 final size:34
Alignment explanation
Indices: 98400004--98400072 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 34
98399994 TATGTTGAGT
* *
98400004 TATAATAGTAAAATAATAATAATAGTGATAATAA
1 TATAATAGTAAAATAATAACAAAAGTGATAATAA
*
98400038 TATATTAGATAAAATAATAACAAAAGT-AGTAATAA
1 TATAATAG-TAAAATAATAACAAAAGTGA-TAATAA
98400073 GAATGATAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
34 8 0.27
35 22 0.73
ACGTcount: A:0.59, C:0.01, G:0.09, T:0.30
Consensus pattern (34 bp):
TATAATAGTAAAATAATAACAAAAGTGATAATAA
Found at i:98404140 original size:28 final size:28
Alignment explanation
Indices: 98404100--98404155 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
98404090 AAAGGGAAAG
*
98404100 ATCACGCTGTAATATCTAGTGATTTGGC
1 ATCACGCTGTAATAACTAGTGATTTGGC
98404128 ATCACGCTGTAATAACTAGTGATTTGGC
1 ATCACGCTGTAATAACTAGTGATTTGGC
98404156 CAATATTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (28 bp):
ATCACGCTGTAATAACTAGTGATTTGGC
Found at i:98405772 original size:68 final size:65
Alignment explanation
Indices: 98405695--98405852 Score: 151
Period size: 71 Copynumber: 2.4 Consensus size: 65
98405685 ATACTATGTA
* *
98405695 GTAGTTAGGTCACATGTGTGATACGGGAAGTATC-CCATGTAGACAAGAGAGCTACGGGAGAGAT
1 GTAGCTAGGTCACATGTGTGATACGGGAAGGA-CACCATGTAGACAAGAGAGCTAC--GAGAGA-
98405759 AAAT
62 AAAT
* * * * *
98405763 GTAGCTAGGTCGCATGTATGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAA
1 GTAGCTAGGTCACATGTGTGA-T--ACGGGAAGGACACCATGTAGACAAGAGAGCTACGAGAGAA
98405828 AAT
63 AAT
* *
98405831 G--GCTAAGTCACATGGGTGATAC
1 GTAGCTAGGTCACATGTGTGATAC
98405853 TAAGTGTTCA
Statistics
Matches: 74, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
63 1 0.01
65 1 0.01
66 14 0.19
68 23 0.31
69 6 0.08
70 1 0.01
71 28 0.38
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.22
Consensus pattern (65 bp):
GTAGCTAGGTCACATGTGTGATACGGGAAGGACACCATGTAGACAAGAGAGCTACGAGAGAAAAT
Found at i:98406254 original size:16 final size:17
Alignment explanation
Indices: 98406226--98406257 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
98406216 TAGTAAGTAA
98406226 AGAAATCTTATATTTTG
1 AGAAATCTTATATTTTG
98406243 AGAAAT-TTATATTTT
1 AGAAATCTTATATTTT
98406258 AGTGAGACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (17 bp):
AGAAATCTTATATTTTG
Found at i:98407822 original size:5 final size:5
Alignment explanation
Indices: 98407789--98407871 Score: 59
Period size: 5 Copynumber: 17.0 Consensus size: 5
98407779 AGGCAACCTA
* * * *
98407789 ATTTT ATTTAT ATTTT -TTCT -TTTT ATTATT -TTAT ATTTT ATATT -TTAT
1 ATTTT ATTT-T ATTTT ATTTT ATTTT ATT-TT ATTTT ATTTT ATTTT ATTTT
*
98407837 ATTTT ATTTT ATTTT ATATTT -TTCT ATTTT ATTTT
1 ATTTT ATTTT ATTTT AT-TTT ATTTT ATTTT ATTTT
98407872 CTTACATGTT
Statistics
Matches: 61, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
4 11 0.18
5 40 0.66
6 10 0.16
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:98407825 original size:7 final size:7
Alignment explanation
Indices: 98407795--98407868 Score: 67
Period size: 7 Copynumber: 9.7 Consensus size: 7
98407785 CCTAATTTTA
98407795 TTTATAT
1 TTTATAT
* *
98407802 TTTTTCTT
1 TTTAT-AT
98407810 TTTATTAT
1 TTTA-TAT
98407818 TTTATAT
1 TTTATAT
98407825 TTTATAT
1 TTTATAT
98407832 TTTATAT
1 TTTATAT
98407839 TTTATTTTAT
1 TTTA---TAT
98407849 TTTATATT
1 TTTATA-T
*
98407857 TTTCTAT
1 TTTATAT
98407864 TTTAT
1 TTTAT
98407869 TTTCTTACAT
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
7 32 0.58
8 15 0.27
9 1 0.02
10 7 0.13
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTATAT
Found at i:98407865 original size:39 final size:37
Alignment explanation
Indices: 98407796--98407868 Score: 94
Period size: 39 Copynumber: 1.9 Consensus size: 37
98407786 CTAATTTTAT
98407796 TTATATTTTTTCTTTTTATTATTTTATATTTTATATT
1 TTATATTTTTTCTTTTTATTATTTTATATTTTATATT
* *
98407833 TTATATTTTATTTTATTTTA-TATTTTTCTATTTTAT
1 TTATATTTT-TTCT-TTTTATTA-TTTTATATTTTAT
98407869 TTTCTTACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
37 9 0.29
38 5 0.16
39 17 0.55
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (37 bp):
TTATATTTTTTCTTTTTATTATTTTATATTTTATATT
Found at i:98407873 original size:12 final size:12
Alignment explanation
Indices: 98407789--98407871 Score: 68
Period size: 12 Copynumber: 6.8 Consensus size: 12
98407779 AGGCAACCTA
98407789 ATTTTA-TTTAT
1 ATTTTATTTTAT
98407800 ATTTT-TTCTT-T
1 ATTTTATT-TTAT
98407811 -TTATTATTTTAT
1 ATT-TTATTTTAT
98407823 ATTTTATATTTTAT
1 A-TTT-TATTTTAT
98407837 ATTTTATTTTAT
1 ATTTTATTTTAT
*
98407849 -TTTATATTTTTCT
1 ATTT-TA-TTTTAT
98407862 ATTTTATTTT
1 ATTTTATTTT
98407872 CTTACATGTT
Statistics
Matches: 60, Mismatches: 1, Indels: 21
0.73 0.01 0.26
Matches are distributed among these distances:
10 2 0.03
11 14 0.23
12 19 0.32
13 11 0.18
14 14 0.23
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (12 bp):
ATTTTATTTTAT
Found at i:98413744 original size:15 final size:16
Alignment explanation
Indices: 98413726--98413763 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
98413716 CTTTTACTCT
*
98413726 TTTATTTTC-TTATTA
1 TTTATTTTCTTTATAA
*
98413741 TTTACTTTCTTTATAA
1 TTTATTTTCTTTATAA
98413757 TTTATTT
1 TTTATTT
98413764 CATATCACGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTATTTTCTTTATAA
Found at i:98415423 original size:20 final size:20
Alignment explanation
Indices: 98415357--98415425 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
98415347 CAAAATCATT
98415357 ATATTTGTTTATATAGTTAA
1 ATATTTGTTTATATAGTTAA
*
98415377 ATAATCTTGTACTTCGTCTACTAGTTAA
1 AT-AT-TTG---TT--TATA-TAGTTAA
98415405 ATATTTGTTTATATAGTTAA
1 ATATTTGTTTATATAGTTAA
98415425 A
1 A
98415426 AGTCAAAACC
Statistics
Matches: 39, Mismatches: 2, Indels: 16
0.68 0.04 0.28
Matches are distributed among these distances:
20 10 0.26
21 5 0.13
22 3 0.08
23 2 0.05
25 2 0.05
26 3 0.08
27 5 0.13
28 9 0.23
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.49
Consensus pattern (20 bp):
ATATTTGTTTATATAGTTAA
Found at i:98416910 original size:32 final size:33
Alignment explanation
Indices: 98416874--98416945 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
98416864 AACTTTTATG
*
98416874 AAATATTTT-CAGAAAATC-TGCCAAACAAC-AGA
1 AAATATTTTACACAAAATCAT-CCAAAC-ACTAGA
*
98416906 AAATATTTTACACAAATTCATCCAAACACTAGA
1 AAATATTTTACACAAAATCATCCAAACACTAGA
98416939 AAATATT
1 AAATATT
98416946 AGCTTTTCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 11 0.31
33 23 0.66
34 1 0.03
ACGTcount: A:0.50, C:0.18, G:0.06, T:0.26
Consensus pattern (33 bp):
AAATATTTTACACAAAATCATCCAAACACTAGA
Found at i:98418102 original size:24 final size:24
Alignment explanation
Indices: 98418087--98418138 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
98418077 AATCAATGTC
*
98418087 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATGCT
* *
98418111 AAATATATTATACTAATAATTACT
1 AAATATATTATACTAATAAATGCT
98418135 AAAT
1 AAAT
98418139 CTTATAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATGCT
Found at i:98422544 original size:24 final size:24
Alignment explanation
Indices: 98422529--98422580 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
98422519 AATCAATGTC
98422529 AAATATATTATACTAATAAATGCT
1 AAATATATTATACTAATAAATGCT
*
98422553 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATGCT
98422577 AAAT
1 AAAT
98422581 CTTCTAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATGCT
Found at i:98423494 original size:128 final size:127
Alignment explanation
Indices: 98423266--98423582 Score: 535
Period size: 128 Copynumber: 2.5 Consensus size: 127
98423256 CATACGAGGA
* * *
98423266 AGGACACGATATTTTAAGCCTCCAAAAAATTGAGATCACCTCATGATTTCCAAAACACGCGAGAC
1 AGGACACGATATTTTAAGCCTTC-AAAAACTGAGATCACCTCATGATTTCCAAAACACGCGAAAC
98423331 AACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCATGTT
65 AACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCATGTT
* *
98423394 AGGACACGATATTTTTAAGCCTTCAAAAACTGAGATCATCTCATGATTTCCAAAACATGCGAAAC
1 AGGACACGATA-TTTTAAGCCTTCAAAAACTGAGATCACCTCATGATTTCCAAAACACGCGAAAC
*
98423459 AACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAGAATACCACATCCAGCATGTT
65 AACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCATGTT
* * *
98423522 AGAACACGATATTTTAAGCCTTCAAAAACTGAAACCACCTCATGATTTCCAAAACACGCGA
1 AGGACACGATATTTTAAGCCTTCAAAAACTGAGATCACCTCATGATTTCCAAAACACGCGA
98423583 CGAAAAATTT
Statistics
Matches: 177, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
127 46 0.26
128 120 0.68
129 11 0.06
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (127 bp):
AGGACACGATATTTTAAGCCTTCAAAAACTGAGATCACCTCATGATTTCCAAAACACGCGAAACA
ACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCATGTT
Found at i:98424230 original size:31 final size:32
Alignment explanation
Indices: 98424190--98424255 Score: 82
Period size: 36 Copynumber: 2.0 Consensus size: 32
98424180 AGAGAAAACC
98424190 AAATTATAC-ATA-AATAAATTTAAAAGAAAA
1 AAATTATACAATATAATAAATTTAAAAGAAAA
98424220 AAATATATACATATATATAATAAATTTAAAAGAAAA
1 AAAT-TATAC--A-ATATAATAAATTTAAAAGAAAA
98424256 TATTTACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
30 4 0.13
31 5 0.17
35 3 0.10
36 18 0.60
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (32 bp):
AAATTATACAATATAATAAATTTAAAAGAAAA
Found at i:98424270 original size:29 final size:30
Alignment explanation
Indices: 98424190--98424271 Score: 80
Period size: 36 Copynumber: 2.6 Consensus size: 30
98424180 AGAGAAAACC
98424190 AAAT-TATACAT-AAATAAATTTAAAAGAAAA
1 AAATATATACATAAAATAAATTTAAAAG--AA
98424220 AAATATATACATATATATAATAAATTTAAAAG-A
1 AAATATATAC--ATA-A-AATAAATTTAAAAGAA
*
98424253 AAATATTTACATAAAATAA
1 AAATATATACATAAAATAA
98424272 TATGAAAACA
Statistics
Matches: 45, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
29 5 0.11
30 5 0.11
31 8 0.18
33 12 0.27
35 1 0.02
36 14 0.31
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (30 bp):
AAATATATACATAAAATAAATTTAAAAGAA
Found at i:98424346 original size:52 final size:52
Alignment explanation
Indices: 98424268--98424380 Score: 217
Period size: 52 Copynumber: 2.2 Consensus size: 52
98424258 TTTACATAAA
98424268 ATAATATGAAAACAATAGTGTACATAGAATAGAGCTAATTTTATCAGAAATT
1 ATAATATGAAAACAATAGTGTACATAGAATAGAGCTAATTTTATCAGAAATT
98424320 ATAATATGAAAACAATAGTGTACATAGAATAGAGCTAATTTTATCAGAAATT
1 ATAATATGAAAACAATAGTGTACATAGAATAGAGCTAATTTTATCAGAAATT
98424372 ATATATATG
1 ATA-ATATG
98424381 TATAATAGTA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 55 0.92
53 5 0.08
ACGTcount: A:0.48, C:0.07, G:0.13, T:0.32
Consensus pattern (52 bp):
ATAATATGAAAACAATAGTGTACATAGAATAGAGCTAATTTTATCAGAAATT
Found at i:98425622 original size:14 final size:14
Alignment explanation
Indices: 98425603--98425630 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
98425593 GTCTCACATT
98425603 TATGTAGAAAAGAA
1 TATGTAGAAAAGAA
98425617 TATGTAGAAAAGAA
1 TATGTAGAAAAGAA
98425631 GCCATGGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.21, T:0.21
Consensus pattern (14 bp):
TATGTAGAAAAGAA
Found at i:98431339 original size:16 final size:16
Alignment explanation
Indices: 98431318--98431350 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
98431308 GAATCAGATT
98431318 TATTTCATGAGTTGCC
1 TATTTCATGAGTTGCC
98431334 TATTTCATGAGTTGCC
1 TATTTCATGAGTTGCC
98431350 T
1 T
98431351 TCATTGTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (16 bp):
TATTTCATGAGTTGCC
Found at i:98434315 original size:6 final size:7
Alignment explanation
Indices: 98434294--98434322 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
98434284 ACTTGAATTC
98434294 AACTAAA
1 AACTAAA
98434301 AACTAAA
1 AACTAAA
98434308 AACT-AA
1 AACTAAA
98434314 AACTAAA
1 AACTAAA
98434321 AA
1 AA
98434323 TACATGTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.72, C:0.14, G:0.00, T:0.14
Consensus pattern (7 bp):
AACTAAA
Found at i:98434317 original size:13 final size:14
Alignment explanation
Indices: 98434294--98434322 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
98434284 ACTTGAATTC
98434294 AACTAAAAACTAAA
1 AACTAAAAACTAAA
98434308 AACT-AAAACTAAA
1 AACTAAAAACTAAA
98434321 AA
1 AA
98434323 TACATGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.72, C:0.14, G:0.00, T:0.14
Consensus pattern (14 bp):
AACTAAAAACTAAA
Found at i:98436014 original size:26 final size:27
Alignment explanation
Indices: 98435985--98436060 Score: 75
Period size: 26 Copynumber: 2.8 Consensus size: 27
98435975 TTTTGAAATC
*
98435985 TTTATAAATTTTTTATTTTTATAA-TT
1 TTTATGAATTTTTTATTTTTATAACTT
* *
98436011 TTTATGGGATTTTTTTATTTTTAAAACTT
1 TTTAT--GAATTTTTTATTTTTATAACTT
* *
98436040 TTT-TGAATTATTTATTATTAT
1 TTTATGAATTTTTTATTTTTAT
98436061 TGTTGAGGGG
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
26 18 0.45
28 17 0.43
29 5 0.12
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.66
Consensus pattern (27 bp):
TTTATGAATTTTTTATTTTTATAACTT
Found at i:98436057 original size:29 final size:29
Alignment explanation
Indices: 98435994--98436058 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
98435984 CTTTATAAAT
* *
98435994 TTTTTATTTTTATAATTTTTATGGGATT-
1 TTTTTATTTTTAAAATTTTTATGGAATTA
98436022 TTTTTATTTTTAAAACTTTTT-T-GAATTA
1 TTTTTATTTTTAAAA-TTTTTATGGAATTA
98436050 TTTATTATT
1 TTT-TTATT
98436059 ATTGTTGAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 4 0.12
28 18 0.56
29 10 0.31
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.68
Consensus pattern (29 bp):
TTTTTATTTTTAAAATTTTTATGGAATTA
Found at i:98438393 original size:105 final size:104
Alignment explanation
Indices: 98438211--98438408 Score: 290
Period size: 105 Copynumber: 1.9 Consensus size: 104
98438201 TTTTTTTCTT
*
98438211 AAGAATGTATTGGCCCTTTAGAAGCGAAAAGGGATGACAAACCAAGCACCCTACCCCGGTTACTC
1 AAGAATGTATTGGCCCTTTAGAAGCGAAAAGGGATGACAAACCAAGCACCCCACCCCGGTTACTC
*
98438276 AGCCCAACACACTCCTATTTTATTTTTATATATTTTGGTA
66 AGCCCAACACACTCCTAATTT-TTTTTATATATTTTGGTA
* * * * *
98438316 AAGAATGTTTTGGCCCTTTTGACGC-AAAGTGGGATGACAACCCAAGCACCCCACCCCGGTTACT
1 AAGAATGTATTGGCCCTTTAGAAGCGAAA-AGGGATGACAAACCAAGCACCCCACCCCGGTTACT
* *
98438380 CAGCCTAACACACTCTTAATTTTTTTTAT
65 CAGCCCAACACACTCCTAATTTTTTTTAT
98438409 TTAATTCCGG
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
104 10 0.12
105 73 0.88
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (104 bp):
AAGAATGTATTGGCCCTTTAGAAGCGAAAAGGGATGACAAACCAAGCACCCCACCCCGGTTACTC
AGCCCAACACACTCCTAATTTTTTTTATATATTTTGGTA
Found at i:98443539 original size:20 final size:20
Alignment explanation
Indices: 98443514--98443553 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
98443504 CGATTTTGGT
98443514 ATGGCTGGTTATATTGCAGG
1 ATGGCTGGTTATATTGCAGG
98443534 ATGGCTGGTTATATTGCAGG
1 ATGGCTGGTTATATTGCAGG
98443554 TTTTCCTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.35, T:0.35
Consensus pattern (20 bp):
ATGGCTGGTTATATTGCAGG
Found at i:98444218 original size:24 final size:24
Alignment explanation
Indices: 98444191--98444247 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
98444181 TACTCATTTT
98444191 ACTTTATCAATATTT-AAAATAAAC
1 ACTTTAT-AATATTTAAAAATAAAC
* *
98444215 ACTTTATTATTTTTAAAAATAAAC
1 ACTTTATAATATTTAAAAATAAAC
*
98444239 AGTTTATAA
1 ACTTTATAA
98444248 ATATAATAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (24 bp):
ACTTTATAATATTTAAAAATAAAC
Found at i:98455734 original size:30 final size:30
Alignment explanation
Indices: 98455673--98455735 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
98455663 ATTTATTTTA
*
98455673 TTGTTAATTTTCTTATTATTTTAAAGGCAT
1 TTGTTAATTTTCTTATTATTTTAAAGCCAT
*
98455703 TTGTTAATTTTTTTATTATTTTAGAA-CCAT
1 TTGTTAATTTTCTTATTATTTTA-AAGCCAT
98455733 TTG
1 TTG
98455736 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.25, C:0.06, G:0.10, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAAGCCAT
Found at i:98456993 original size:7 final size:7
Alignment explanation
Indices: 98456981--98457011 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
98456971 CATATACACT
98456981 TTTAATA
1 TTTAATA
98456988 TTTAATA
1 TTTAATA
98456995 TTTAATA
1 TTTAATA
98457002 TTTAATA
1 TTTAATA
98457009 TTT
1 TTT
98457012 TTTACCATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
TTTAATA
Found at i:98462563 original size:36 final size:36
Alignment explanation
Indices: 98462523--98462594 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
98462513 GATTCATAAG
98462523 ACTAAGCTTTTCACCATGGGGTGCTCTCATATTATT
1 ACTAAGCTTTTCACCATGGGGTGCTCTCATATTATT
* *
98462559 ACTAAGCTTTTCACCGTGGGGTGCTCTCGTATTATT
1 ACTAAGCTTTTCACCATGGGGTGCTCTCATATTATT
98462595 TGTAAAGAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.39
Consensus pattern (36 bp):
ACTAAGCTTTTCACCATGGGGTGCTCTCATATTATT
Found at i:98469904 original size:17 final size:16
Alignment explanation
Indices: 98469875--98469916 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
98469865 AGTATTTTAC
**
98469875 ATATAAAAATATAGTA
1 ATATAAAAATATAAAA
98469891 ATATAAACAATATAAAA
1 ATATAAA-AATATAAAA
98469908 ATATAAAAA
1 ATATAAAAA
98469917 AACGGAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (16 bp):
ATATAAAAATATAAAA
Found at i:98469910 original size:8 final size:8
Alignment explanation
Indices: 98469875--98469916 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
98469865 AGTATTTTAC
98469875 ATATAAAA
1 ATATAAAA
**
98469883 ATATAGTA
1 ATATAAAA
98469891 ATATAAACA
1 ATATAAA-A
98469900 ATATAAAA
1 ATATAAAA
98469908 ATATAAAA
1 ATATAAAA
98469916 A
1 A
98469917 AACGGAAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
8 21 0.72
9 8 0.28
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (8 bp):
ATATAAAA
Found at i:98475476 original size:43 final size:43
Alignment explanation
Indices: 98475333--98475457 Score: 216
Period size: 43 Copynumber: 2.9 Consensus size: 43
98475323 GTTTATTAAA
*
98475333 AAAAAGCGCCGCTAAAAGTCGTGGCCCTTAGCGGCGTTTGAAG
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAG
*
98475376 AAAAAGCGCCACTAAAAGTCGT-GCTCTTTAGCGGCGTTTGAAG
1 AAAAAGCGCCGCTAAAAGTCGTGGC-CTTTAGCGGCGTTTGAAG
98475419 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTT
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTT
98475458 TTCCCACAAA
Statistics
Matches: 77, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
42 2 0.03
43 73 0.95
44 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (43 bp):
AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAG
Found at i:98475850 original size:21 final size:21
Alignment explanation
Indices: 98475824--98475864 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
98475814 TTCCTATGCT
*
98475824 CTGCCTCTCTCGCTGTTGCCG
1 CTGCCTCCCTCGCTGTTGCCG
98475845 CTGCCTCCCTCGCTGTTGCC
1 CTGCCTCCCTCGCTGTTGCC
98475865 TCCGCTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.46, G:0.22, T:0.32
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGTTGCCG
Found at i:98476501 original size:16 final size:17
Alignment explanation
Indices: 98476464--98476502 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
98476454 AAAATATTAT
*
98476464 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
98476481 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
98476497 TTAATA
1 TTAATA
98476503 AAATTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:98481480 original size:9 final size:9
Alignment explanation
Indices: 98481466--98481657 Score: 109
Period size: 9 Copynumber: 20.6 Consensus size: 9
98481456 TATTTAAGTA
98481466 TTATGTAAG
1 TTATGTAAG
98481475 TTATGTAAG
1 TTATGTAAG
*
98481484 TTATGATATG
1 TTATG-TAAG
* * *
98481494 ATATATATAT
1 TTATGTA-AG
*
98481504 TTATGTAAA
1 TTATGTAAG
* *
98481513 TTATAT-AT
1 TTATGTAAG
*
98481521 TTATCTAAG
1 TTATGTAAG
*
98481530 TTATATAAG
1 TTATGTAAG
98481539 TTATGTAAG
1 TTATGTAAG
*
98481548 TTATGTAAA
1 TTATGTAAG
*
98481557 TTATGATATAAAA
1 TTATG---T-AAG
*
98481570 TATATTTAAG
1 T-TATGTAAG
98481580 TATTATGTAAG
1 --TTATGTAAG
98481591 TTATGTAAG
1 TTATGTAAG
* *
98481600 TTATAT-AT
1 TTATGTAAG
*
98481608 TTATCTAAG
1 TTATGTAAG
*
98481617 TTATATAAG
1 TTATGTAAG
*
98481626 TTATGTACG
1 TTATGTAAG
*
98481635 TTTTGTAAG
1 TTATGTAAG
* *
98481644 TTATATAAA
1 TTATGTAAG
98481653 TTATG
1 TTATG
98481658 ATATCAAATA
Statistics
Matches: 141, Mismatches: 31, Indels: 22
0.73 0.16 0.11
Matches are distributed among these distances:
8 12 0.09
9 99 0.70
10 13 0.09
11 8 0.06
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:98481519 original size:17 final size:17
Alignment explanation
Indices: 98481497--98481623 Score: 89
Period size: 17 Copynumber: 7.4 Consensus size: 17
98481487 TGATATGATA
*
98481497 TATATATTTATGTAAAT
1 TATATATTTATGTAAGT
*
98481514 TATATATTTATCTAAGT
1 TATATATTTATGTAAGT
*
98481531 TATATAAGTTATGTAAGT
1 TATAT-ATTTATGTAAGT
* * *
98481549 TATGTAAATTATGATATA-A
1 TATAT-ATTTATG-TA-AGT
* *
98481568 AATATATTTAAGT-A-T
1 TATATATTTATGTAAGT
* *
98481583 TATGTAAGTTATGTAAGT
1 TATAT-ATTTATGTAAGT
*
98481601 TATATATTTATCTAAGT
1 TATATATTTATGTAAGT
98481618 TATATA
1 TATATA
98481624 AGTTATGTAC
Statistics
Matches: 85, Mismatches: 19, Indels: 12
0.73 0.16 0.10
Matches are distributed among these distances:
15 4 0.05
16 6 0.07
17 38 0.45
18 31 0.36
19 5 0.06
20 1 0.01
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (17 bp):
TATATATTTATGTAAGT
Found at i:98481604 original size:87 final size:90
Alignment explanation
Indices: 98481504--98481688 Score: 259
Period size: 96 Copynumber: 2.0 Consensus size: 90
98481494 ATATATATAT
*
98481504 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TA-TGTAAGTTATGTAAATTATGATAT
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
98481566 AAAATATATTTAAGTATTATGTAAG
66 AAAATATATTTAAGTATTATGTAAG
*
98481591 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA----TTGTAAGTTATATAAATTA
* *
98481656 TGATATCAAATATATTTATGTATTATGTAAG
60 TGATATAAAATATATTTAAGTATTATGTAAG
98481687 TT
1 TT
98481689 TTTTATTTCA
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
87 34 0.40
90 1 0.01
91 2 0.02
96 48 0.56
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (90 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
AAAATATATTTAAGTATTATGTAAG
Found at i:98481696 original size:87 final size:87
Alignment explanation
Indices: 98481504--98481688 Score: 234
Period size: 87 Copynumber: 2.1 Consensus size: 87
98481494 ATATATATAT
*
98481504 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
** *
98481569 ATATATTTAAGTATTATGTAAG
66 ATATATCAAAATATTATGTAAG
* * *
98481591 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTAT-ATA-AAT
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAA-
*
98481654 TATGATATCAAATATATTTATGT-A-
65 AAT-ATATCAAA-ATA-TTATGTAAG
98481678 TTATGTAAGTT
1 TTATGTAAGTT
98481689 TTTTATTTCA
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
85 2 0.02
86 5 0.06
87 70 0.81
88 3 0.03
89 6 0.07
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (87 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
ATATATCAAAATATTATGTAAG
Found at i:98481782 original size:15 final size:15
Alignment explanation
Indices: 98481762--98481817 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
98481752 AAGTAGCAGG
98481762 ATTAAATAATATTTA
1 ATTAAATAATATTTA
98481777 ATTAAATAATATTT-
1 ATTAAATAATATTTA
98481791 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
98481806 ATTAAGTAATAT
1 ATTAAATAATAT
98481818 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:98482837 original size:358 final size:357
Alignment explanation
Indices: 98482026--98482906 Score: 1681
Period size: 358 Copynumber: 2.5 Consensus size: 357
98482016 ATAAAACAGA
*
98482026 GAATTTTTTAAGATTCATCATACGCGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
98482091 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
98482156 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
98482221 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAATAGTAATTTGAATATAAT
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAATAGTAATTTGAATATAAT
98482286 AATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
261 AATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
98482351 TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
326 TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
* * *
98482383 GAATTTTTTAAGATCCATCATATGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
* *
98482448 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTACATACTTTGCATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
98482513 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
*
98482578 ATTTAAAAGTATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGC-AAAAAATAGTAATTTGAATATAA
98482643 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
260 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
98482708 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
325 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
98482741 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
98482806 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
*
98482871 AAGGTTGGAGAGAAGGTCATCCATTGTTGTAATTTT
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTT
98482907 AATGGACAAG
Statistics
Matches: 510, Mismatches: 13, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
357 229 0.45
358 281 0.55
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (357 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAATAGTAATTTGAATATAAT
AATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAA
TGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
Found at i:98483150 original size:15 final size:15
Alignment explanation
Indices: 98483130--98483158 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
98483120 AGAATTTTGA
98483130 AATAAAACGTACCTT
1 AATAAAACGTACCTT
98483145 AATAAAACGTACCT
1 AATAAAACGTACCT
98483159 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:98483675 original size:183 final size:183
Alignment explanation
Indices: 98483360--98483728 Score: 693
Period size: 183 Copynumber: 2.0 Consensus size: 183
98483350 CCTAGAACAG
98483360 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
98483425 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAAGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAAGAGG
*
98483490 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
*
98483543 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
98483608 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAAGAGG
* *
98483673 AGCAGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
98483726 ATG
1 ATG
98483729 GAACTATATC
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 181 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAAGAGG
AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
Found at i:98483818 original size:14 final size:13
Alignment explanation
Indices: 98483799--98483828 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
98483789 CAATATAATT
98483799 TTACTTCATATATA
1 TTACTTCATATA-A
98483813 TTACTTCATATAA
1 TTACTTCATATAA
98483826 TTA
1 TTA
98483829 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:98486391 original size:15 final size:14
Alignment explanation
Indices: 98486371--98486419 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
98486361 GGTAAAAATT
98486371 TTGGGGGAGAAGAAG
1 TTGGGGGAGAA-AAG
*
98486386 TT-GGGG-G-AAAT
1 TTGGGGGAGAAAAG
98486397 TTGGGGGAGAAAAAG
1 TTGGGGGAG-AAAAG
98486412 TTGGGGGA
1 TTGGGGGA
98486420 AATTTGGGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 4 0.14
12 5 0.18
13 2 0.07
14 4 0.14
15 13 0.46
ACGTcount: A:0.31, C:0.00, G:0.51, T:0.18
Consensus pattern (14 bp):
TTGGGGGAGAAAAG
Found at i:98486401 original size:26 final size:26
Alignment explanation
Indices: 98486370--98486430 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
98486360 GGGTAAAAAT
*
98486370 TTTGGGGGAGAAGAAGTTGGGGGAAA
1 TTTGGGGGAGAAAAAGTTGGGGGAAA
98486396 TTTGGGGGAGAAAAAGTTGGGGGAAA
1 TTTGGGGGAGAAAAAGTTGGGGGAAA
98486422 TTTGGGGGA
1 TTTGGGGGA
98486431 AATCGGGGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.30, C:0.00, G:0.49, T:0.21
Consensus pattern (26 bp):
TTTGGGGGAGAAAAAGTTGGGGGAAA
Found at i:98486402 original size:11 final size:11
Alignment explanation
Indices: 98486386--98486433 Score: 51
Period size: 11 Copynumber: 4.0 Consensus size: 11
98486376 GGAGAAGAAG
98486386 TTGGGGGAAAT
1 TTGGGGGAAAT
*
98486397 TTGGGGGAGAAAAAG
1 TT-GGGG-G--AAAT
98486412 TTGGGGGAAAT
1 TTGGGGGAAAT
98486423 TTGGGGGAAAT
1 TTGGGGGAAAT
98486434 CGGGGAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
11 16 0.52
12 4 0.13
13 2 0.06
14 4 0.13
15 5 0.16
ACGTcount: A:0.31, C:0.00, G:0.46, T:0.23
Consensus pattern (11 bp):
TTGGGGGAAAT
Found at i:98486743 original size:28 final size:28
Alignment explanation
Indices: 98486711--98486768 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
98486701 AATCAAAACT
*
98486711 CTAT-ACCTTAAACCATTAAACTATATCC
1 CTATAACCTTAAACC-CTAAACTATATCC
* *
98486739 CTATAACCTTAATCCCTAAAGTATATCC
1 CTATAACCTTAAACCCTAAACTATATCC
98486767 CT
1 CT
98486769 TAAACCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (28 bp):
CTATAACCTTAAACCCTAAACTATATCC
Found at i:98486769 original size:21 final size:21
Alignment explanation
Indices: 98486745--98486788 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
98486735 ATCCCTATAA
* *
98486745 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCCTAAACTATATC
98486766 CCTTAAACCCTAAACTATATC
1 CCTTAAACCCTAAACTATATC
98486787 CC
1 CC
98486789 CTAACCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.30
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:98486818 original size:49 final size:50
Alignment explanation
Indices: 98486716--98486820 Score: 117
Period size: 49 Copynumber: 2.1 Consensus size: 50
98486706 AAACTCTATA
* * * * *
98486716 CCTTAAACCATTAAACTATATCCCTATAACCTTAATCCCTAAAGTATATC
1 CCTTAAACCACTAAACTATATCCCTATAACCATAAACCCTAAAATATAAC
*
98486766 CCTTAAACC-CTAAACTATATCCC-CTAACCATAAACCAC-AAAATAATAAC
1 CCTTAAACCACTAAACTATATCCCTATAACCATAAACC-CTAAAAT-ATAAC
98486815 CCTTAA
1 CCTTAA
98486821 GCCTTAACCA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
48 14 0.30
49 24 0.51
50 9 0.19
ACGTcount: A:0.42, C:0.30, G:0.01, T:0.27
Consensus pattern (50 bp):
CCTTAAACCACTAAACTATATCCCTATAACCATAAACCCTAAAATATAAC
Found at i:98487022 original size:7 final size:7
Alignment explanation
Indices: 98487010--98487036 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
98487000 CCCTAAGTAT
98487010 TAACCCC
1 TAACCCC
98487017 TAACCCC
1 TAACCCC
98487024 TAACCCC
1 TAACCCC
98487031 TAACCC
1 TAACCC
98487037 TTAAATCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.56, G:0.00, T:0.15
Consensus pattern (7 bp):
TAACCCC
Found at i:98487067 original size:21 final size:22
Alignment explanation
Indices: 98487025--98487068 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
98487015 CCTAACCCCT
*
98487025 AACCCCTAACCCTTAAATCATA
1 AACCCCTAACCCTTAAACCATA
*
98487047 AACCCC-AACCCTTACACCATA
1 AACCCCTAACCCTTAAACCATA
98487068 A
1 A
98487069 TACATAAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCCCTAACCCTTAAACCATA
Found at i:98487199 original size:41 final size:41
Alignment explanation
Indices: 98487142--98487234 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
98487132 AACCCTAAAC
98487142 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
98487183 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
98487224 TTTTTAGCGGC
1 TTTTTAGCGGC
98487235 ACTTTTGGTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
Found at i:98487292 original size:65 final size:65
Alignment explanation
Indices: 98487178--98487299 Score: 192
Period size: 65 Copynumber: 1.9 Consensus size: 65
98487168 CCGCTAATGC
* *
98487178 TCTTATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTATTTTTAGCGGCACTTTTGG
1 TCTTATTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCACTTTTGG
* *
98487243 TCTTATTTTTAGCGACGTTTTACCAAAAGTGCCGCTATTGCT-TCGATTTTTAGCGGC
1 TCTTATTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCT-GATTTTTAGCGGC
98487300 GTTTTACCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
64 1 0.02
65 51 0.98
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.40
Consensus pattern (65 bp):
TCTTATTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCACTTTTGG
Found at i:98487327 original size:106 final size:105
Alignment explanation
Indices: 98487142--98487348 Score: 317
Period size: 106 Copynumber: 2.0 Consensus size: 105
98487132 AACCCTAAAC
* *
98487142 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTATTTTTAGCGGCGTTTTACCAAAAG
1 TTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTACCAAAAG
98487207 CGCCGCTAATGCTCTTATTTTTAGCGGCACTTTTGGTCTTA
66 CGCCGCTAATGCTC-TATTTTTAGCGGCACTTTTGGTCTTA
* *
98487248 TTTTTAGCGACGTTTTACCAAAAGTGCCGCTATTGCT-TCGATTTTTAGCGGCGTTTTACCAAAA
1 TTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCT-GATTTTTAGCGGCGTTTTACCAAAA
* * **
98487312 GCGCCGCTATTGCTCTGTTTTTAGCGGCGTTTTTGGT
65 GCGCCGCTAATGCTCTATTTTTAGCGGCACTTTTGGT
98487349 AAAACACCGC
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
105 20 0.22
106 72 0.78
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.39
Consensus pattern (105 bp):
TTTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTACCAAAAG
CGCCGCTAATGCTCTATTTTTAGCGGCACTTTTGGTCTTA
Found at i:98487344 original size:40 final size:41
Alignment explanation
Indices: 98487247--98487344 Score: 155
Period size: 41 Copynumber: 2.4 Consensus size: 41
98487237 TTTTGGTCTT
* *
98487247 ATTTTTAGCGACGTTTTACCAAAAGTGCCGCTATTGCTTCG
1 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTTCG
98487288 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGC-TCTG
1 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTTC-G
98487329 -TTTTTAGCGGCGTTTT
1 ATTTTTAGCGGCGTTTT
98487345 TGGTAAAACA
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
40 18 0.33
41 36 0.67
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (41 bp):
ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTTCG
Found at i:98487359 original size:40 final size:42
Alignment explanation
Indices: 98487247--98487367 Score: 142
Period size: 41 Copynumber: 3.0 Consensus size: 42
98487237 TTTTGGTCTT
* **
98487247 ATTTTTAGCGACGTTTTACCAAAAGTGCCGCTATTGCT-TCG
1 ATTTTTAGCGGCGTTTTACCAAAAGCACCGCTATTGCTCTCG
*
98487288 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCT-G
1 ATTTTTAGCGGCGTTTTACCAAAAGCACCGCTATTGCTCTCG
***
98487329 -TTTTTAGCGGCGTTTTTGGTAAAA-CACCGCTATTGCTCT
1 ATTTTTAGCGGCG-TTTTACCAAAAGCACCGCTATTGCTCT
98487368 ATGTTTTACA
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
40 26 0.36
41 45 0.62
42 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (42 bp):
ATTTTTAGCGGCGTTTTACCAAAAGCACCGCTATTGCTCTCG
Found at i:98496658 original size:12 final size:12
Alignment explanation
Indices: 98496643--98496674 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
98496633 GACAAATAAG
98496643 TAAAAAAAAGTA
1 TAAAAAAAAGTA
98496655 TAAAAAAAAGTA
1 TAAAAAAAAGTA
98496667 TAAAAAAA
1 TAAAAAAA
98496675 TAATTAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (12 bp):
TAAAAAAAAGTA
Found at i:98496991 original size:14 final size:14
Alignment explanation
Indices: 98496936--98496991 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
98496926 AAATAAAAAT
98496936 ATATAATCATATA-A
1 ATATAAT-ATATATA
*
98496950 ATTATGAAAATATATA
1 A-TAT-AATATATATA
* *
98496966 ATACAATGTATATA
1 ATATAATATATATA
98496980 ATATAATATATA
1 ATATAATATATA
98496992 AAAATATCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
14 19 0.58
15 10 0.30
16 4 0.12
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (14 bp):
ATATAATATATATA
Found at i:98502143 original size:3 final size:3
Alignment explanation
Indices: 98502135--98502160 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
98502125 TTATAAATGC
98502135 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
98502161 ATTACCAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:98504384 original size:39 final size:36
Alignment explanation
Indices: 98504290--98504387 Score: 92
Period size: 39 Copynumber: 2.6 Consensus size: 36
98504280 ATCATTAATT
* * *
98504290 TAAAAATATATATTATAAT-AACATAATTGTATATA
1 TAAATATATATATTATAATCTACATAATTATATATA
98504325 TAAATACT-TATCATTAATAATCTACAATAATTATATAATA
1 TAAATA-TATAT-ATT-ATAATCTAC-ATAATTATAT-ATA
*
98504365 CTAACTATATATATTATAATCTA
1 -TAAATATATATATTATAATCTA
98504388 TCCTAAAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
35 8 0.16
36 4 0.08
37 5 0.10
38 2 0.04
39 17 0.33
40 7 0.14
41 8 0.16
ACGTcount: A:0.50, C:0.08, G:0.01, T:0.41
Consensus pattern (36 bp):
TAAATATATATATTATAATCTACATAATTATATATA
Found at i:98504648 original size:12 final size:12
Alignment explanation
Indices: 98504631--98504664 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
98504621 CGGCCCTCCC
98504631 ATATTAATTTTT
1 ATATTAATTTTT
*
98504643 ATATTATTTTTT
1 ATATTAATTTTT
98504655 ATA-TAATTTT
1 ATATTAATTTT
98504665 AAAAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:98504826 original size:30 final size:30
Alignment explanation
Indices: 98504790--98504852 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
98504780 ACTTAACAAG
*
98504790 CAAATGT-TTCTAAAATAATAACAAAATTAA
1 CAAATGTCTT-TAAAATAATAAAAAAATTAA
98504820 CAAATGTCTTTAAAATAATAAAAAAATTAA
1 CAAATGTCTTTAAAATAATAAAAAAATTAA
98504850 CAA
1 CAA
98504853 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGTCTTTAAAATAATAAAAAAATTAA
Found at i:98504917 original size:22 final size:22
Alignment explanation
Indices: 98504892--98504934 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
98504882 TATCCAAACA
98504892 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
98504914 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
98504935 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:98504938 original size:11 final size:11
Alignment explanation
Indices: 98504899--98504939 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
98504889 ACAATAACAA
98504899 CAAAATAGTAG
1 CAAAATAGTAG
* *
98504910 CAACATAATAG
1 CAAAATAGTAG
*
98504921 TAAAATAGTAG
1 CAAAATAGTAG
98504932 CAAAATAG
1 CAAAATAG
98504940 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:98509763 original size:19 final size:19
Alignment explanation
Indices: 98509726--98509765 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
98509716 TAAAAAATAT
*
98509726 AAATAATAAAAACTCATAA
1 AAATAATAAAAAATCATAA
* *
98509745 AAATTATAAAAAATTATAA
1 AAATAATAAAAAATCATAA
98509764 AA
1 AA
98509766 TACTCAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (19 bp):
AAATAATAAAAAATCATAA
Found at i:98509960 original size:19 final size:20
Alignment explanation
Indices: 98509926--98509969 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
98509916 TTGAAATATT
*
98509926 TAAAATTTTATACAAACTTA
1 TAAAATTCTATACAAACTTA
98509946 TAAAATTCT-TACAAACTTA
1 TAAAATTCTATACAAACTTA
98509965 TAAAA
1 TAAAA
98509970 ATTATTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.36
Consensus pattern (20 bp):
TAAAATTCTATACAAACTTA
Found at i:98509979 original size:19 final size:18
Alignment explanation
Indices: 98509933--98510012 Score: 63
Period size: 19 Copynumber: 4.2 Consensus size: 18
98509923 ATTTAAAATT
*
98509933 TTATACAAACTTATAAAA
1 TTATTCAAACTTATAAAA
*
98509951 TTCTTACAAACTTATAAAAA
1 TTATT-CAAACTTAT-AAAA
**
98509971 TTATTCAAAAATATTAAAA
1 TTATTCAAACTTA-TAAAA
*
98509990 TTGATAT-AAACATATAAAA
1 TT-AT-TCAAACTTATAAAA
98510009 TTAT
1 TTAT
98510013 AAAAAAATCA
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
18 5 0.10
19 28 0.55
20 17 0.33
21 1 0.02
ACGTcount: A:0.54, C:0.09, G:0.01, T:0.36
Consensus pattern (18 bp):
TTATTCAAACTTATAAAA
Found at i:98509989 original size:39 final size:39
Alignment explanation
Indices: 98509946--98510028 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
98509936 TACAAACTTA
* * **
98509946 TAAAATTCTTACAAACTTATAAAAATTATTCAAAAAT-AT
1 TAAAATTCATACAAACATAT-AAAATTATAAAAAAATCAT
* *
98509985 TAAAATTGATATAAACATATAAAATTATAAAAAAATCAT
1 TAAAATTCATACAAACATATAAAATTATAAAAAAATCAT
98510024 TAAAA
1 TAAAA
98510029 AATTATCTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 14 0.38
39 23 0.62
ACGTcount: A:0.59, C:0.07, G:0.01, T:0.33
Consensus pattern (39 bp):
TAAAATTCATACAAACATATAAAATTATAAAAAAATCAT
Found at i:98510004 original size:20 final size:19
Alignment explanation
Indices: 98509967--98510028 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
98509957 CAAACTTATA
**
98509967 AAAATTATTCAAAAATATT
1 AAAATTATAAAAAAATATT
* *
98509986 AAAATTGATATAAACATA-T
1 AAAATT-ATAAAAAAATATT
98510005 AAAATTATAAAAAAATCATT
1 AAAATTATAAAAAAAT-ATT
98510025 AAAA
1 AAAA
98510029 AATTATCTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
18 8 0.23
19 14 0.40
20 13 0.37
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAATTATAAAAAAATATT
Found at i:98510620 original size:9 final size:9
Alignment explanation
Indices: 98510606--98510700 Score: 88
Period size: 9 Copynumber: 10.4 Consensus size: 9
98510596 TTTAAATCAC
98510606 TTTTTATAA
1 TTTTTATAA
98510615 TTTTTAT--
1 TTTTTATAA
98510622 TGTTTTATAA
1 T-TTTTATAA
*
98510632 TTTATTAGAA
1 TTT-TTATAA
98510642 TTTTTATAA
1 TTTTTATAA
*
98510651 TATTTATAA
1 TTTTTATAA
98510660 GTTTTTATAA
1 -TTTTTATAA
98510670 TTTTTA-AA
1 TTTTTATAA
* *
98510678 TTTGTGTCAA
1 TTTTTAT-AA
*
98510688 TTTTAATAA
1 TTTTTATAA
98510697 TTTT
1 TTTT
98510701 AAATATTTAA
Statistics
Matches: 70, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
7 1 0.01
8 12 0.17
9 34 0.49
10 23 0.33
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:98510647 original size:36 final size:36
Alignment explanation
Indices: 98510606--98510680 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
98510596 TTTAAATCAC
* *
98510606 TTTTTATAATTTTTAT-TG-TTTTATAATTTATTAGAA
1 TTTTTATAATATTTATAAGTTTTTATAATTT-TTA-AA
98510642 TTTTTATAATATTTATAAGTTTTTATAATTTTTAAA
1 TTTTTATAATATTTATAAGTTTTTATAATTTTTAAA
98510678 TTT
1 TTT
98510681 GTGTCAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 20 0.57
37 4 0.11
38 11 0.31
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (36 bp):
TTTTTATAATATTTATAAGTTTTTATAATTTTTAAA
Found at i:98510648 original size:19 final size:17
Alignment explanation
Indices: 98510606--98510680 Score: 80
Period size: 19 Copynumber: 4.2 Consensus size: 17
98510596 TTTAAATCAC
*
98510606 TTTTTATAATTTTT-AT
1 TTTTTATAATTTTTAAA
98510622 TGTTTTATAATTTATTAGAA
1 T-TTTTATAATTT-TTA-AA
*
98510642 TTTTTATAATATTTATAAG
1 TTTTTATAAT-TTT-TAAA
98510661 TTTTTATAATTTTTAAA
1 TTTTTATAATTTTTAAA
98510678 TTT
1 TTT
98510681 GTGTCAATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
16 1 0.02
17 17 0.34
18 5 0.10
19 21 0.42
20 6 0.12
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (17 bp):
TTTTTATAATTTTTAAA
Found at i:98513551 original size:17 final size:18
Alignment explanation
Indices: 98513529--98513578 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
98513519 ATATAAACTT
98513529 TAAAAATT-T-TAAAAATA
1 TAAAAATTATATAAAAA-A
98513546 TAAAAATTATATAAAAAA
1 TAAAAATTATATAAAAAA
98513564 TAAAGAATATATATA
1 TAAA-AAT-TATATA
98513579 TACATAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 8 0.28
18 6 0.21
19 9 0.31
20 6 0.21
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
TAAAAATTATATAAAAAA
Found at i:98513561 original size:18 final size:18
Alignment explanation
Indices: 98513519--98513578 Score: 59
Period size: 17 Copynumber: 3.3 Consensus size: 18
98513509 TTTGTTTCAA
* *
98513519 ATATAAACTTTAAAAATT
1 ATATAAAATATAAAAATT
*
98513537 TTA-AAAATATAAAAATT
1 ATATAAAATATAAAAATT
*
98513554 ATATAAAAAATAAAGAATAT
1 ATATAAAATATAAA-AAT-T
98513574 ATATA
1 ATATA
98513579 TACATAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
17 14 0.41
18 11 0.32
19 3 0.09
20 6 0.18
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (18 bp):
ATATAAAATATAAAAATT
Found at i:98513564 original size:20 final size:20
Alignment explanation
Indices: 98513539--98513578 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
98513529 TAAAAATTTT
98513539 AAAAATATAAAAAT-TATATA
1 AAAAATA-AAAAATATATATA
*
98513559 AAAAATAAAGAATATATATA
1 AAAAATAAAAAATATATATA
98513579 TACATAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (20 bp):
AAAAATAAAAAATATATATA
Found at i:98513859 original size:20 final size:20
Alignment explanation
Indices: 98513834--98513871 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
98513824 AATGACAAAA
98513834 CAGTCACTCAACTTTCAATT
1 CAGTCACTCAACTTTCAATT
98513854 CAGTCACTCAACTTTCAA
1 CAGTCACTCAACTTTCAA
98513872 AAAATAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.32
Consensus pattern (20 bp):
CAGTCACTCAACTTTCAATT
Found at i:98514978 original size:38 final size:38
Alignment explanation
Indices: 98514933--98515006 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
98514923 ATAACAGAAA
*
98514933 ATGTTAAT-GAGTGACTAATTTGTAACTTTTTGATAACG
1 ATGTTAATGGA-TGACTAATTTGTAACTTTTCGATAACG
* * *
98514971 ATGTTAATGGATGACTGATTTTTCACTTTTCGATAA
1 ATGTTAATGGATGACTAATTTGTAACTTTTCGATAA
98515007 TATTAGTGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 29 0.94
39 2 0.06
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (38 bp):
ATGTTAATGGATGACTAATTTGTAACTTTTCGATAACG
Found at i:98517842 original size:16 final size:16
Alignment explanation
Indices: 98517817--98517850 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
98517807 AGGAATATAT
* *
98517817 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
98517833 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
98517849 AT
1 AT
98517851 AGGATATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:98518437 original size:21 final size:21
Alignment explanation
Indices: 98518413--98518453 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
98518403 ATATGAGAAA
* *
98518413 TTACGTATGTTATGGTTAAAC
1 TTACGTATATTATGGATAAAC
*
98518434 TTACTTATATTATGGATAAA
1 TTACGTATATTATGGATAAA
98518454 TATATTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (21 bp):
TTACGTATATTATGGATAAAC
Found at i:98519976 original size:17 final size:17
Alignment explanation
Indices: 98519954--98519988 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
98519944 ACTACTCAAC
98519954 CTCATTT-ATTACCATTT
1 CTCATTTCA-TACCATTT
98519971 CTCATTTCATACCATTT
1 CTCATTTCATACCATTT
98519988 C
1 C
98519989 CTTAGTTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.94
18 1 0.06
ACGTcount: A:0.23, C:0.29, G:0.00, T:0.49
Consensus pattern (17 bp):
CTCATTTCATACCATTT
Found at i:98520329 original size:40 final size:39
Alignment explanation
Indices: 98520270--98520360 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 39
98520260 TCAGTATCGT
* ** *
98520270 ACACTTAGTGCCACATATAGCCGAAGCTATTCCAATTCAC
1 ACACTTAGTGCTATTTATAGCCGAAGCTATTCCAA-CCAC
* *
98520310 ACATTTAGTGCTATTTATAGCCGAAGCTATTTCAACCAC
1 ACACTTAGTGCTATTTATAGCCGAAGCTATTCCAACCAC
98520349 ACACTTAGTGCT
1 ACACTTAGTGCT
98520361 GAACATATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 14 0.32
40 30 0.68
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (39 bp):
ACACTTAGTGCTATTTATAGCCGAAGCTATTCCAACCAC
Found at i:98525321 original size:18 final size:18
Alignment explanation
Indices: 98525265--98525321 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
98525255 TCCTTTTATA
* *
98525265 TTTCTTATTTCTTT-GATT
1 TTTCTTATTT-TTTCCATC
* *
98525283 TTTCTTTTTTTTTCCTTTC
1 TTTCTTATTTTTTCC-ATC
98525302 TTTCTTATTTTTTCCATC
1 TTTCTTATTTTTTCCATC
98525320 TT
1 TT
98525322 CTCCTTTCTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
17 3 0.10
18 13 0.42
19 15 0.48
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.74
Consensus pattern (18 bp):
TTTCTTATTTTTTCCATC
Found at i:98526596 original size:17 final size:18
Alignment explanation
Indices: 98526570--98526604 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
98526560 AAAACATATT
*
98526570 TAATTAAAATTTAAAATA
1 TAATTAAAATTGAAAATA
98526588 TAATT-AAATTGAAAATA
1 TAATTAAAATTGAAAATA
98526605 AACATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (18 bp):
TAATTAAAATTGAAAATA
Found at i:98531974 original size:20 final size:20
Alignment explanation
Indices: 98531941--98532003 Score: 58
Period size: 23 Copynumber: 3.0 Consensus size: 20
98531931 AACATTCAGG
98531941 AAAATTTCT-AAAAA-TATACA
1 AAAATTT-TAAAAAATTATA-A
98531961 AAAATTTTAAAAAAATTATAA
1 AAAATTTT-AAAAAATTATAA
98531982 AATACATTTTAAAAAAATTATA
1 AA-A-ATTTT-AAAAAATTATA
98532004 TTGTTATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
19 1 0.03
20 7 0.18
21 8 0.21
22 5 0.13
23 17 0.45
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATTTTAAAAAATTATAA
Found at i:98531994 original size:12 final size:11
Alignment explanation
Indices: 98531960--98532000 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
98531950 AAAAATATAC
98531960 AAAAATTTTAA
1 AAAAATTTTAA
*
98531971 AAAAATTATAA
1 AAAAATTTTAA
*
98531982 AATACATTTTAA
1 AA-AAATTTTAA
98531994 AAAAATT
1 AAAAATT
98532001 ATATTGTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAAATTTTAA
Found at i:98532037 original size:16 final size:17
Alignment explanation
Indices: 98532016--98532049 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
98532006 GTTATTTTTG
*
98532016 AAATTA-TAAAAATATA
1 AAATTATTAAAAAAATA
98532032 AAATTATTAAAAAAATA
1 AAATTATTAAAAAAATA
98532049 A
1 A
98532050 GAATAAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AAATTATTAAAAAAATA
Found at i:98535219 original size:96 final size:96
Alignment explanation
Indices: 98535053--98535237 Score: 264
Period size: 96 Copynumber: 1.9 Consensus size: 96
98535043 AGGAAGTATT
* * * *
98535053 TCATCAACGAGAATGATGGAGTAGACAATGAGCCCAAGAAGCTTGGTTCAAGCAAGGGAAAAGTC
1 TCATCAAAGAGAATGATGGAGCAGACAATGAGCCCAAAAAGCTTGGTTCAAGCAAGGGAAAACTC
98535118 AAAGCCAAAAGGGCAAAGAGGAGCTAGTTTG
66 AAAGCCAAAAGGGCAAAGAGGAGCTAGTTTG
* * **
98535149 TCATCAAAGGGAATGATGGAGCAGACAATGAGCCCAAAAAGCTTGGTTTAAGTGAGGGAAAAACT
1 TCATCAAAGAGAATGATGGAGCAGACAATGAGCCCAAAAAGCTTGGTTCAAGCAAGGG-AAAACT
* *
98535214 -GAAGCCAAGAGGGCAAAGAGGAGC
65 CAAAGCCAAAAGGGCAAAGAGGAGC
98535238 AAAAAGAAGT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 73 0.94
97 5 0.06
ACGTcount: A:0.40, C:0.15, G:0.30, T:0.15
Consensus pattern (96 bp):
TCATCAAAGAGAATGATGGAGCAGACAATGAGCCCAAAAAGCTTGGTTCAAGCAAGGGAAAACTC
AAAGCCAAAAGGGCAAAGAGGAGCTAGTTTG
Found at i:98536917 original size:22 final size:24
Alignment explanation
Indices: 98536871--98536920 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 24
98536861 CAACTATTAC
* *
98536871 ATTTTCTTTAAAATTGATTTTATA
1 ATTTTCTTTAAAACTGACTTTATA
98536895 ATTTT-TTTAAAACTG-CTTTATA
1 ATTTTCTTTAAAACTGACTTTATA
98536917 ATTT
1 ATTT
98536921 AACTTATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.42
23 9 0.38
24 5 0.21
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (24 bp):
ATTTTCTTTAAAACTGACTTTATA
Found at i:98537759 original size:12 final size:13
Alignment explanation
Indices: 98537726--98537772 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
98537716 AAATAGAAGA
98537726 TATTATTT-TGTTT
1 TATTATTTAT-TTT
98537739 TATTATTTATTTT
1 TATTATTTATTTT
98537752 TATT-TTTA-TTT
1 TATTATTTATTTT
98537763 TATTAATTTA
1 TATT-ATTTA
98537773 GGATAGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
11 7 0.23
12 4 0.13
13 19 0.61
14 1 0.03
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (13 bp):
TATTATTTATTTT
Found at i:98539070 original size:47 final size:47
Alignment explanation
Indices: 98538985--98539097 Score: 140
Period size: 47 Copynumber: 2.4 Consensus size: 47
98538975 GGAGTCAAGG
* *
98538985 TCCAATTAAATAAATAAAACAGAAATCTACACACATGGGTG-CAGAGT
1 TCCATTTAAATAAATAAAGCAGAAATCTACACACATGGGTGTC-GAGT
* *
98539032 TCCATTTAAATAAATAAAGCAGAACTCTATACTA-ATGGGTGTCGAGT
1 TCCATTTAAATAAATAAAGCAGAAATCTACAC-ACATGGGTGTCGAGT
* *
98539079 TTCATTTAAATAAAGAAAG
1 TCCATTTAAATAAATAAAG
98539098 AAAGATTCTA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 56 0.97
48 2 0.03
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (47 bp):
TCCATTTAAATAAATAAAGCAGAAATCTACACACATGGGTGTCGAGT
Found at i:98549844 original size:12 final size:12
Alignment explanation
Indices: 98549827--98549851 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98549817 TCCTGATCAC
98549827 AAATTTAATTTA
1 AAATTTAATTTA
98549839 AAATTTAATTTA
1 AAATTTAATTTA
98549851 A
1 A
98549852 TTAGAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
AAATTTAATTTA
Found at i:98549850 original size:17 final size:17
Alignment explanation
Indices: 98549828--98549862 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
98549818 CCTGATCACA
98549828 AATTTAATTTA-AAATTT
1 AATTTAA-TTAGAAATTT
98549845 AATTTAATTAGAAATTT
1 AATTTAATTAGAAATTT
98549862 A
1 A
98549863 GAATCCCAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
AATTTAATTAGAAATTT
Found at i:98550498 original size:41 final size:41
Alignment explanation
Indices: 98550357--98550805 Score: 521
Period size: 41 Copynumber: 11.0 Consensus size: 41
98550347 TTTTAAAATA
* * ** *
98550357 CAGAGCAATAGCGGCGTTTTAAGAAAAACGCCGCTAAAAA-
1 CAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
** * *** *
98550397 CAGAGCAACAGCGGCGTTTTTTTACTAAAACGCCTCTAAAAA-
1 CAGAGCATTAGCGGCG--CTTTCGGTAAAACGCCGCTAAAAAC
* * *
98550439 CTGATCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAAC
1 CAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
* *
98550480 CAGATCATTAGCGACGC-TTCGGGTAAAACGCCGCTAAAAAC
1 CAGAGCATTAGCGGCGCTTTC-GGTAAAACGCCGCTAAAAAC
*
98550521 CAGAGCATTAGCGGCGC-TTCGGGTAAAACGCCGCTAAAAAA
1 CAGAGCATTAGCGGCGCTTTC-GGTAAAACGCCGCTAAAAAC
* * *
98550562 CAGAGTATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAAA
1 CAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
* * * * *
98550603 CAGATCATTAGCAGCGCTTTGGGTAAAACGCCACTAAAAAA
1 CAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
* *
98550644 TAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAAAC
1 CAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
* * *
98550685 CAGAACATTAGCGCCG-TTTTGTGTAAAACGCCGCTAAAAAC
1 CAGAGCATTAGCGGCGCTTTCG-GTAAAACGCCGCTAAAAAC
*
98550726 CAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAAAC
1 CAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
*
98550767 CAGAGCATTAGCGGCGCTTTCGGTAAAACACCGCTAAAA
1 CAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAA
98550806 GTCATAGAAC
Statistics
Matches: 357, Mismatches: 45, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
40 40 0.11
41 279 0.78
42 38 0.11
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (41 bp):
CAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC
Found at i:98551055 original size:36 final size:39
Alignment explanation
Indices: 98550985--98551060 Score: 104
Period size: 36 Copynumber: 2.0 Consensus size: 39
98550975 ATAGTTTAAG
* * *
98550985 ATATATGGTTTAGGGTTTAAGCAGGTTTATGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
98551024 ATATATGGTTTAAGATTT-A-C-GGTTTAGGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
98551060 A
1 A
98551061 GTAATTGAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
38 1 0.03
39 16 0.47
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (39 bp):
ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
Found at i:98555033 original size:133 final size:133
Alignment explanation
Indices: 98554795--98555179 Score: 743
Period size: 133 Copynumber: 2.9 Consensus size: 133
98554785 TGGTGATTCC
98554795 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
*
98554860 TGGACTTAGATTGATTTAAGAGTTTATTGATGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
98554925 TAT
131 TAT
98554928 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
98554993 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
98555058 TAT
131 TAT
* *
98555061 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTCAATG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
98555126 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
98555180 TGTTGAATTC
Statistics
Matches: 249, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 249 1.00
ACGTcount: A:0.21, C:0.10, G:0.18, T:0.51
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
TAT
Found at i:98557157 original size:21 final size:21
Alignment explanation
Indices: 98557128--98557167 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
98557118 GTTTTTATAT
*
98557128 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
98557149 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
98557168 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:98563707 original size:43 final size:43
Alignment explanation
Indices: 98563649--98563984 Score: 220
Period size: 43 Copynumber: 8.1 Consensus size: 43
98563639 GCGGCGTTTT
* *
98563649 TTTTTTAAAAAGCGCCGCTAATGTTCTTGGTCAATAGCGGCG-
1 TTTTTTAAAAAGCGCCGCTAAAGTTCTTGGTCTATAGCGGCGC
*
98563691 TTTTTTACTAAAGCGCCGCTAAAGTTCTTGGTCTATAGCGGCGC
1 TTTTTTA-AAAAGCGCCGCTAAAGTTCTTGGTCTATAGCGGCGC
* * * * * * *
98563735 TTTTGTAAAAAACGCCGCCAAAG-ACTAGGACCTTTAGCGGCGC
1 TTTTTTAAAAAGCGCCGCTAAAGTTCTTGG-TCTATAGCGGCGC
* * *
98563778 TTTTTAAAAAAAACGCCGCTAATGTTCTTGGTCTATAGCGGCG-
1 TTTTT-TAAAAAGCGCCGCTAAAGTTCTTGGTCTATAGCGGCGC
* **
98563821 -TTTTTATAAAAGCGCCGC-CAAGAAC----T-T-TAGCGGCGC
1 TTTTTTA-AAAAGCGCCGCTAAAGTTCTTGGTCTATAGCGGCGC
* * * * * * *
98563857 TTTTATAAAAAACGCCGCTAAAAG-TCCTGGTCTTTGGCAGC-A
1 TTTTTTAAAAAGCGCCGCT-AAAGTTCTTGGTCTATAGCGGCGC
* * * * *
98563899 TCTTTT-AAGAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCG-
1 TTTTTTAAAAAGCGCCGCTAAAGTTCTTGGTCTATAGCGGCGC
* * * *
98563940 -TTTTT-AAGAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGC
1 TTTTTTAAAAAGCGCCGCTAAAGTTCTTGGTCTATAGCGGCGC
98563981 TTTT
1 TTTT
98563985 AAAATAACGC
Statistics
Matches: 235, Mismatches: 39, Indels: 40
0.75 0.12 0.13
Matches are distributed among these distances:
35 8 0.03
36 11 0.05
37 7 0.03
38 3 0.01
40 43 0.18
41 30 0.13
42 33 0.14
43 65 0.28
44 31 0.13
45 4 0.02
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (43 bp):
TTTTTTAAAAAGCGCCGCTAAAGTTCTTGGTCTATAGCGGCGC
Found at i:98563807 original size:87 final size:78
Alignment explanation
Indices: 98563704--98563878 Score: 226
Period size: 87 Copynumber: 2.1 Consensus size: 78
98563694 TTTACTAAAG
98563704 CGCCGCTAAAGTTCTTGGTCTATAGCGGCGCTTTTGTA-AAAAACGCCGCCAAAGACTAGGACCT
1 CGCCGCTAAAGTTCTTGGTCTATAGCGGCG-TTTT-TATAAAAACGCCGCC-AAG---A--A-CT
98563768 TTAGCGGCGCTTTTTAAAAAAAA
57 TTAGCGGCGC-TTTTAAAAAAAA
* *
98563791 CGCCGCTAATGTTCTTGGTCTATAGCGGCGTTTTTATAAAAGCGCCGCCAAGAACTTTAGCGGCG
1 CGCCGCTAAAGTTCTTGGTCTATAGCGGCGTTTTTATAAAAACGCCGCCAAGAACTTTAGCGGCG
*
98563856 CTTTTATAAAAAA
66 CTTTTAAAAAAAA
98563869 CGCCGCTAAA
1 CGCCGCTAAA
98563879 AGTCCTGGTC
Statistics
Matches: 83, Mismatches: 4, Indels: 11
0.85 0.04 0.11
Matches are distributed among these distances:
78 20 0.24
79 12 0.14
80 1 0.01
82 1 0.01
85 5 0.06
86 15 0.18
87 29 0.35
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (78 bp):
CGCCGCTAAAGTTCTTGGTCTATAGCGGCGTTTTTATAAAAACGCCGCCAAGAACTTTAGCGGCG
CTTTTAAAAAAAA
Found at i:98563956 original size:40 final size:40
Alignment explanation
Indices: 98563845--98563986 Score: 185
Period size: 40 Copynumber: 3.5 Consensus size: 40
98563835 CCGCCAAGAA
* * *
98563845 CTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAAGTCCTGGT
1 CTTTAGCGGCG-TTTT-T-AAGAGCGCCGCTAAAGGTCCTGGT
* * *
98563888 CTTTGGCAGCATCTTTTAAGAGCGCCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGT-TTTTAAGAGCGCCGCTAAAGGTCCTGGT
98563929 CTTTAGCGGCGTTTTTAAGAGCGCCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTTTAAGAGCGCCGCTAAAGGTCCTGGT
*
98563969 CTTTAGCGGCGCTTTTAA
1 CTTTAGCGGCGTTTTTAA
98563987 AATAACGCCG
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
40 45 0.51
41 30 0.34
42 2 0.02
43 11 0.12
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.30
Consensus pattern (40 bp):
CTTTAGCGGCGTTTTTAAGAGCGCCGCTAAAGGTCCTGGT
Found at i:98565564 original size:29 final size:31
Alignment explanation
Indices: 98565523--98565588 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
98565513 ATATATATAA
98565523 AAATTTTAATAATTTTTAA-TTTGTAAAAAT
1 AAATTTTAATAATTTTTAACTTTGTAAAAAT
*
98565553 AAATTTT-ATAATTTTTAACTTTTTTAAAAAT
1 AAATTTTAATAATTTTTAAC-TTTGTAAAAAT
*
98565584 CAATT
1 AAATT
98565589 AAATGCTAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 11 0.34
30 7 0.22
31 14 0.44
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.52
Consensus pattern (31 bp):
AAATTTTAATAATTTTTAACTTTGTAAAAAT
Found at i:98574962 original size:9 final size:9
Alignment explanation
Indices: 98574948--98575075 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
98574938 ATGTATTAGT
98574948 TAAGTTATG
1 TAAGTTATG
98574957 TAAGTTGTTATG
1 TAA---GTTATG
*
98574969 TACGTTATG
1 TAAGTTATG
*
98574978 TGAGTTATG
1 TAAGTTATG
*
98574987 TAAATTATG
1 TAAGTTATG
98574996 TAAGTTATG
1 TAAGTTATG
*
98575005 TGAGTTATG
1 TAAGTTATG
98575014 TAAGTTGCTATG
1 TAAG-T--TATG
*
98575026 TAAATTATG
1 TAAGTTATG
*
98575035 TAAGTTATA
1 TAAGTTATG
*
98575044 TGAGTTATG
1 TAAGTTATG
98575053 TAAGTTATG
1 TAAGTTATG
* *
98575062 TAATTTATT
1 TAAGTTATG
98575071 TAAGT
1 TAAGT
98575076 AATGATCTAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
10 1 0.01
11 1 0.01
12 15 0.16
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Done.