Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 302 of 343
Found at i:98575075 original size:57 final size:57
Alignment explanation
Indices: 98574948--98575075 Score: 166
Period size: 57 Copynumber: 2.2 Consensus size: 57
98574938 ATGTATTAGT
* ** * *
98574948 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGCTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
98575005 TGAGTTATGTAAGTTGCTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGCTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
98575062 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
98575076 AATGATCTAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGCTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:98576608 original size:64 final size:64
Alignment explanation
Indices: 98576237--98576598 Score: 633
Period size: 64 Copynumber: 5.7 Consensus size: 64
98576227 GATTTTATTG
* *
98576237 ATATTATATTAATAAATAAATTTATT-AAAATCGTGATAGAAATATTTGTATATTAGATGGGAC
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGAGAC
*
98576300 ATATTATATTAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGAT---AC
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGAGAC
*
98576361 ATATTATATTAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGAGAC
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGAGAC
*
98576425 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTATATATTAGATGAGAC
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGAGAC
*
98576489 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGGGAC
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGAGAC
*
98576553 ATATTATATCAATAAATAAATTTATTAAAAATTGTGATAGAAATAT
1 ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATAT
98576599 AGAAATATTA
Statistics
Matches: 290, Mismatches: 5, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
61 61 0.21
63 26 0.09
64 203 0.70
ACGTcount: A:0.47, C:0.04, G:0.10, T:0.39
Consensus pattern (64 bp):
ATATTATATCAATAAATAAATTTATTAAAAATCGTGATAGAAATATTTGTATATTAGATGAGAC
Found at i:98579582 original size:16 final size:17
Alignment explanation
Indices: 98579563--98579598 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
98579553 ATTATTTTAT
*
98579563 ATATAAA-TAAAAAATA
1 ATATAAATTAAAAAACA
98579579 ATATAAATTAAAAAACA
1 ATATAAATTAAAAAACA
98579596 ATA
1 ATA
98579599 AGTTATATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (17 bp):
ATATAAATTAAAAAACA
Found at i:98580020 original size:22 final size:22
Alignment explanation
Indices: 98579980--98580065 Score: 77
Period size: 22 Copynumber: 4.0 Consensus size: 22
98579970 CATTAACCCC
*
98579980 TAAACCCTTGAA-CCTTAAACCA
1 TAAACCCTT-AATCCCTAAACCA
**
98580002 TAAACCCTTAATCCCTAAACTT
1 TAAACCCTTAATCCCTAAACCA
* *
98580024 TAAACAC-TAATCCCTAAACGA
1 TAAACCCTTAATCCCTAAACCA
** *
98580045 TATCCCCTTAACCCCTAAACC
1 TAAACCCTTAATCCCTAAACC
98580066 CTTAACCTTT
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
21 18 0.35
22 33 0.65
ACGTcount: A:0.38, C:0.35, G:0.02, T:0.24
Consensus pattern (22 bp):
TAAACCCTTAATCCCTAAACCA
Found at i:98580078 original size:80 final size:79
Alignment explanation
Indices: 98579887--98580074 Score: 252
Period size: 80 Copynumber: 2.4 Consensus size: 79
98579877 TTAACCCATG
* * * * **
98579887 TCCCCTTAATCCCTAAACCCCTCAACCCTAAACCATTAACCCTTAATCCCTAAAATTTGGACACT
1 TCCCCTTAACCCCTAAA-CCCTTAACCTTAAACCATAAACCCTTAATCCCTAAAATTTAAACACT
*
98579952 AAACCCTAAATCATG
65 AAACCCTAAATCATA
* *
98579967 TCCCATTAACCCCTAAACCCTTGAACCTTAAACCATAAACCCTTAATCCCTAAACTTTAAACACT
1 TCCCCTTAACCCCTAAACCCTT-AACCTTAAACCATAAACCCTTAATCCCTAAAATTTAAACACT
*
98580032 AATCCCTAAA-CGATA
65 AAACCCTAAATC-ATA
98580047 TCCCCTTAACCCCTAAACCCTTAACCTT
1 TCCCCTTAACCCCTAAACCCTTAACCTT
98580075 TAAATGTTAA
Statistics
Matches: 95, Mismatches: 11, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
79 11 0.12
80 84 0.88
ACGTcount: A:0.35, C:0.37, G:0.03, T:0.26
Consensus pattern (79 bp):
TCCCCTTAACCCCTAAACCCTTAACCTTAAACCATAAACCCTTAATCCCTAAAATTTAAACACTA
AACCCTAAATCATA
Found at i:98580296 original size:14 final size:16
Alignment explanation
Indices: 98580277--98580314 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
98580267 ATAATCCATA
98580277 TAAACCATA-A-ACCC
1 TAAACCATATATACCC
98580291 TAAACCATATATACCC
1 TAAACCATATATACCC
*
98580307 TAGACCAT
1 TAAACCAT
98580315 GCATAAACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 11 0.52
ACGTcount: A:0.45, C:0.32, G:0.03, T:0.21
Consensus pattern (16 bp):
TAAACCATATATACCC
Found at i:98580321 original size:41 final size:42
Alignment explanation
Indices: 98580192--98580329 Score: 105
Period size: 41 Copynumber: 3.3 Consensus size: 42
98580182 AATATTAACC
98580192 CATAAACCATAAAGCCCTAAACCCATA-AT-CCCTAGACCCATG
1 CATAAACCATAAA-CCCTAAA-CCATATATACCCTAGACCCATG
* * * *
98580234 CATAATCCCTAAACCTTAAA--ATAT-TAACTCGTCATA-ATCCAT-
1 CATAAACCATAAACCCTAAACCATATAT-AC-C--C-TAGACCCATG
98580276 -ATAAACCATAAACCCTAAACCATATATACCCTAGA-CCATG
1 CATAAACCATAAACCCTAAACCATATATACCCTAGACCCATG
*
98580316 CATAAACCTTAAAC
1 CATAAACCATAAAC
98580330 TATAATAATG
Statistics
Matches: 75, Mismatches: 8, Indels: 27
0.68 0.07 0.25
Matches are distributed among these distances:
38 4 0.05
39 6 0.08
40 3 0.04
41 35 0.47
42 12 0.16
43 12 0.16
44 3 0.04
ACGTcount: A:0.43, C:0.30, G:0.04, T:0.22
Consensus pattern (42 bp):
CATAAACCATAAACCCTAAACCATATATACCCTAGACCCATG
Found at i:98580566 original size:14 final size:14
Alignment explanation
Indices: 98580547--98580600 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
98580537 GTGTCATTAA
98580547 TTTAGGGTTTATAG
1 TTTAGGGTTTATAG
*
98580561 TTTAGGGTTT-TAAA
1 TTTAGGGTTTAT-AG
* *
98580575 TTTAAGGTCTATAG
1 TTTAGGGTTTATAG
98580589 TTTATGGGTTTA
1 TTTA-GGGTTTA
98580601 GGGGTTAAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
13 1 0.03
14 24 0.77
15 6 0.19
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.50
Consensus pattern (14 bp):
TTTAGGGTTTATAG
Found at i:98580587 original size:28 final size:29
Alignment explanation
Indices: 98580545--98580599 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
98580535 ATGTGTCATT
* *
98580545 AATTTAGGGTTTATAGTTTA-GGGTTTTA
1 AATTTAAGGTCTATAGTTTATGGGTTTTA
98580573 AATTTAAGGTCTATAGTTTATGGGTTT
1 AATTTAAGGTCTATAGTTTATGGGTTT
98580600 AGGGGTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.25, C:0.02, G:0.24, T:0.49
Consensus pattern (29 bp):
AATTTAAGGTCTATAGTTTATGGGTTTTA
Found at i:98581298 original size:40 final size:41
Alignment explanation
Indices: 98581123--98581321 Score: 190
Period size: 41 Copynumber: 4.8 Consensus size: 41
98581113 AATAGTTTAT
* * *
98581123 ATCTATAGCGGTGTTTTTCCAAAAAGCGCCGCTAAAACTCAA
1 ATCTATAGCGGCGTTTTT-GAAAAAGCGCCGCTAAAACCCAA
* * * *
98581165 ATCTATTGCGGCGTTTTTTTATAAAAACGCCACTAAAACCCAA
1 ATCTATAGCGGCG-TTTTTGA-AAAAGCGCCGCTAAAACCCAA
* * *
98581208 ATCCT-TAGCGGCCTTTTT-ATAAAAACGCCACTAAAACCCAA
1 AT-CTATAGCGGCGTTTTTGA-AAAAGCGCCGCTAAAACCCAA
* *
98581249 ATCCT-TAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTC-A
1 AT-CTATAGCGGCGTTTTTGAAAAAGCGCCGCTAAAACCCAA
**
98581289 ATCTATAGCGGCGTTTTTGAGGAAGCGCCGCTA
1 ATCTATAGCGGCGTTTTTGAAAAAGCGCCGCTA
98581322 TTGCCACTAA
Statistics
Matches: 137, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.01
40 29 0.21
41 55 0.40
42 18 0.13
43 31 0.23
44 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (41 bp):
ATCTATAGCGGCGTTTTTGAAAAAGCGCCGCTAAAACCCAA
Found at i:98581478 original size:154 final size:139
Alignment explanation
Indices: 98581342--98581599 Score: 340
Period size: 140 Copynumber: 1.8 Consensus size: 139
98581332 AGCTCAGAAT
* * *
98581342 AAACGACGCCGTTCGGCTTAATCTTTTAGCGGCGTTTTTGTACAAACGCCGCTATA-AGTCGACC
1 AAAC-ACG-CGTTCGGCTTAATC-TTTAGCGGCGTTTTTATAAAAACGCCGCTATAGA-TAGACC
* * *
98581406 TATAGCGGCGCTTCCTTAAAAACGCCGCTAATACTCAAACCTATAGCAGCGTTTTG-GTGAAGCG
62 TATAGCGGCGCTTCCGTAAAAACGCCGCTAATACTC-AATCTATAGCGGCGTTTTGAG-GAAGCG
98581470 CCGCTATTGCCACCG
125 CCGCTATTGCCACCG
* * *
98581485 AAGCTCGCGTTCGGCTTAATCTTTAGTGGCGTTTTTATAAAAACGCCGCTATAGATAGACCTATA
1 AAACACGCGTTCGGCTTAATCTTTAGCGGCGTTTTTATAAAAACGCCGCTATAGATAGACCTATA
* * *
98581550 GTGGCGCTTTCGTAAAAATGCCGCTAATACTCAATCTATAGCGGCGTTTT
66 GCGGCGCTTCCGTAAAAACGCCGCTAATACTCAATCTATAGCGGCGTTTT
98581600 TTCAAAAACG
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
139 16 0.16
140 66 0.65
141 15 0.15
142 2 0.02
143 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (139 bp):
AAACACGCGTTCGGCTTAATCTTTAGCGGCGTTTTTATAAAAACGCCGCTATAGATAGACCTATA
GCGGCGCTTCCGTAAAAACGCCGCTAATACTCAATCTATAGCGGCGTTTTGAGGAAGCGCCGCTA
TTGCCACCG
Found at i:98587366 original size:28 final size:28
Alignment explanation
Indices: 98587335--98587390 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
98587325 CCTAGGGTGA
98587335 AGTTTTAATTTATTAATTTTCTTGAAAT
1 AGTTTTAATTTATTAATTTTCTTGAAAT
98587363 AGTTTTAATTTATTAATTTTCTTGAAAT
1 AGTTTTAATTTATTAATTTTCTTGAAAT
98587391 TTTAATCACG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.04, G:0.07, T:0.57
Consensus pattern (28 bp):
AGTTTTAATTTATTAATTTTCTTGAAAT
Found at i:98594184 original size:60 final size:60
Alignment explanation
Indices: 98594108--98594227 Score: 213
Period size: 60 Copynumber: 2.0 Consensus size: 60
98594098 CATATACAGA
* *
98594108 AATGGGTATGGAGTTATGATCTTCCAAGGACCTGCTAAATACATGGAAATCTTGGAAAGT
1 AATGGGTATGGAGTTATGATCTTCCAAAGACCCGCTAAATACATGGAAATCTTGGAAAGT
*
98594168 AATGGGTATGGGGTTATGATCTTCCAAAGACCCGCTAAATACATGGAAATCTTGGAAAGT
1 AATGGGTATGGAGTTATGATCTTCCAAAGACCCGCTAAATACATGGAAATCTTGGAAAGT
98594228 GAACATACCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (60 bp):
AATGGGTATGGAGTTATGATCTTCCAAAGACCCGCTAAATACATGGAAATCTTGGAAAGT
Found at i:98596945 original size:19 final size:19
Alignment explanation
Indices: 98596881--98596949 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 19
98596871 TTTTTAATTA
* *
98596881 AAAATTATAAAATGTATTA-
1 AAAAGTATAAAAT-TAATAT
* *
98596900 AAAATTATAAAAAT-AT-T
1 AAAAGTATAAAATTAATAT
*
98596917 AAATGT-TAAAATTAATAT
1 AAAAGTATAAAATTAATAT
98596935 AAAAGTATAAAATTA
1 AAAAGTATAAAATTA
98596950 TTATGAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
16 6 0.15
17 7 0.17
18 7 0.17
19 20 0.50
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
AAAAGTATAAAATTAATAT
Found at i:98596995 original size:17 final size:18
Alignment explanation
Indices: 98596973--98597006 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
98596963 TAAAAGCTTA
98596973 TAAATATATAA-AAATTT
1 TAAATATATAATAAATTT
98596990 TAAATATATAATAAATT
1 TAAATATATAATAAATT
98597007 CTATTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAATATATAATAAATTT
Found at i:98597076 original size:17 final size:18
Alignment explanation
Indices: 98597044--98597087 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
98597034 ATTTAAAATT
*
98597044 TTATAAAAGCTTATAATTAA
1 TTATAAAA--TTATAATAAA
98597064 -TATAAAATTATAATAAA
1 TTATAAAATTATAATAAA
98597081 TTATAAA
1 TTATAAA
98597088 GAAACATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 9 0.41
18 6 0.27
19 7 0.32
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (18 bp):
TTATAAAATTATAATAAA
Found at i:98597581 original size:2 final size:2
Alignment explanation
Indices: 98597574--98597603 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
98597564 ATTAAAAATA
*
98597574 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98597604 TAAAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98605744 original size:43 final size:43
Alignment explanation
Indices: 98605693--98605891 Score: 330
Period size: 43 Copynumber: 4.6 Consensus size: 43
98605683 GAAAAAACGT
*
98605693 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGG-AAAAGTGC
1 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGT-GGTAAAAGCGC
*
98605736 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCAC
1 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGC
98605779 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGAG-AAAAGCGC
1 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTG-GTAAAAGCGC
* *
98605822 CACTAAAGGTCAAGGCTTTTAGCGGCGCTTGTGGTAAAAGCGC
1 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGC
98605865 CGCTAAAGGTCAAGGCTTTTAGCGGCG
1 CGCTAAAGGTCAAGGCTTTTAGCGGCG
98605892 CTTTTTTTAC
Statistics
Matches: 147, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
42 3 0.02
43 143 0.97
44 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (43 bp):
CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGC
Found at i:98611767 original size:18 final size:18
Alignment explanation
Indices: 98611744--98611816 Score: 83
Period size: 18 Copynumber: 4.1 Consensus size: 18
98611734 CAATCTCAAC
*
98611744 TACTATATACGTGAACAG
1 TACTATATACGTGAATAG
* *
98611762 TACTATATACATAAATAG
1 TACTATATACGTGAATAG
* *
98611780 TACCATATATGTGAATAG
1 TACTATATACGTGAATAG
* *
98611798 TGCTGTATACGTGAATAG
1 TACTATATACGTGAATAG
98611816 T
1 T
98611817 TCCATAAATG
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.33
Consensus pattern (18 bp):
TACTATATACGTGAATAG
Found at i:98613486 original size:24 final size:24
Alignment explanation
Indices: 98613458--98613506 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
98613448 ATTTATAGGT
98613458 TGAAATTCATAGTATATTTGACTA
1 TGAAATTCATAGTATATTTGACTA
98613482 TGAAATTCATAGTATATTTGACTA
1 TGAAATTCATAGTATATTTGACTA
98613506 T
1 T
98613507 AATAACTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.43
Consensus pattern (24 bp):
TGAAATTCATAGTATATTTGACTA
Found at i:98614596 original size:12 final size:12
Alignment explanation
Indices: 98614579--98614608 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
98614569 CAAATGTAAT
98614579 ATATATATATAC
1 ATATATATATAC
98614591 ATATATATATAC
1 ATATATATATAC
98614603 ATATAT
1 ATATAT
98614609 TAACAGCGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATATATAC
Found at i:98621390 original size:35 final size:35
Alignment explanation
Indices: 98621351--98621419 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
98621341 AAATTTCCTA
98621351 AGATTAAAATGGACTAACAAATAACAAATAACTAT
1 AGATTAAAATGGACTAACAAATAACAAATAACTAT
*
98621386 AGATTAAAATGGGCTAACAAATAACAAATAACTA
1 AGATTAAAATGGACTAACAAATAACAAATAACTA
98621420 AGGAAATAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.22
Consensus pattern (35 bp):
AGATTAAAATGGACTAACAAATAACAAATAACTAT
Found at i:98626116 original size:26 final size:26
Alignment explanation
Indices: 98626070--98626122 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
98626060 TCAAACATGC
*
98626070 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
98626096 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
98626122 A
1 A
98626123 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:98627639 original size:26 final size:26
Alignment explanation
Indices: 98627608--98627715 Score: 146
Period size: 26 Copynumber: 4.2 Consensus size: 26
98627598 TGAAATGCCC
*
98627608 ATCATGGAACATTTACCTAAACCATT
1 ATCATGAAACATTTACCTAAACCATT
98627634 ATCATGAAACATTTACCT-AACCTATT
1 ATCATGAAACATTTACCTAAACC-ATT
* * *
98627660 ATCATGGAATATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATT
* *
98627686 ATCATGAAACATTTACCTAACCCTTT
1 ATCATGAAACATTTACCTAAACCATT
98627712 ATCA
1 ATCA
98627716 ATTTTTATCA
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
25 4 0.05
26 66 0.90
27 3 0.04
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAAACCATT
Found at i:98627686 original size:52 final size:52
Alignment explanation
Indices: 98627608--98627715 Score: 182
Period size: 52 Copynumber: 2.1 Consensus size: 52
98627598 TGAAATGCCC
98627608 ATCATGGAACATTTACCTAAACCATTATCATGAAACATTTACCTAA-CCTATT
1 ATCATGGAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCT-TT
* *
98627660 ATCATGGAATATTTACCTAACCCATTATCATGAAACATTTACCTAACCCTTT
1 ATCATGGAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCTTT
98627712 ATCA
1 ATCA
98627716 ATTTTTATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
52 50 0.94
53 3 0.06
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCTTT
Found at i:98635245 original size:53 final size:53
Alignment explanation
Indices: 98635073--98635268 Score: 203
Period size: 53 Copynumber: 3.6 Consensus size: 53
98635063 AAGGACACAA
* * * *
98635073 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGGCATGGCATTGGTAAG-TTCATAAGGCAAGGATACCAT
* * * * * * * *
98635127 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGACAAAGATCCCAT
1 GTAAGACCATGCCAAGGCATGGCATTGGT-AAGTTC-ATAAGGCAAGGATACCAT
* * *
98635182 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATACCAC
1 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGCAAGGATACCAT
* * *
98635235 GTAAGACCATGTCAAGGCATGGCACTGTTAAGTT
1 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTT
98635269 AAAAAGGAAA
Statistics
Matches: 113, Mismatches: 27, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 44 0.39
54 30 0.27
55 39 0.35
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (53 bp):
GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGCAAGGATACCAT
Found at i:98643140 original size:26 final size:26
Alignment explanation
Indices: 98643109--98643216 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
98643099 TGAAATGCCC
*
98643109 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
98643135 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
98643161 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
98643187 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
98643213 ATCA
1 ATCA
98643217 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:98650240 original size:26 final size:26
Alignment explanation
Indices: 98650209--98650316 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
98650199 TGAAATGCCC
*
98650209 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
98650235 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
98650261 ATCATGGAATATTTACCTAATCCATC
1 ATCATGGAACATTTACCTAACCCATT
98650287 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
98650313 ATCA
1 ATCA
98650317 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:98652034 original size:14 final size:13
Alignment explanation
Indices: 98652015--98652070 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 13
98652005 AAAATATGTA
98652015 ATAATATAAATCAT
1 ATAATATAAAT-AT
98652029 ATAATAATAAAATAT
1 ATAAT-AT-AAATAT
98652044 ATGTAATA-AAATAT
1 A--TAATATAAATAT
98652058 ATAATAT-AATAT
1 ATAATATAAATAT
98652070 A
1 A
98652071 AGAAGAATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
12 11 0.30
14 12 0.32
15 5 0.14
16 5 0.14
17 4 0.11
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (13 bp):
ATAATATAAATAT
Found at i:98652035 original size:17 final size:15
Alignment explanation
Indices: 98652005--98652063 Score: 75
Period size: 14 Copynumber: 3.9 Consensus size: 15
98651995 TTTACAAATA
*
98652005 AAAATATGTAATAAT
1 AAAATATATAATAAT
98652020 ATAAATCATATAATAAT
1 A-AAAT-ATATAATAAT
*
98652037 AAAATATAT-GTAAT
1 AAAATATATAATAAT
98652051 AAAATATATAATA
1 AAAATATATAATA
98652064 TAATATAAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
14 13 0.34
15 7 0.18
16 8 0.21
17 10 0.26
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (15 bp):
AAAATATATAATAAT
Found at i:98652051 original size:34 final size:33
Alignment explanation
Indices: 98652001--98652068 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
98651991 ATAATTTACA
* *
98652001 AATAAAAATATGTAATAATATAAATCATATAAT
1 AATAAAAATATGTAATAAAATAAATAATATAAT
*
98652034 AATAAAATATATGTAATAAAATATATAATATAAT
1 AATAAAA-ATATGTAATAAAATAAATAATATAAT
98652068 A
1 A
98652069 TAAGAAGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 7 0.23
34 24 0.77
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (33 bp):
AATAAAAATATGTAATAAAATAAATAATATAAT
Found at i:98652062 original size:12 final size:12
Alignment explanation
Indices: 98652027--98652070 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
98652017 AATATAAATC
98652027 ATATAATAATAAA
1 ATAT-ATAATAAA
98652040 ATATATGTAATAAA
1 ATATA--TAATAAA
*
98652054 ATATATAATATA
1 ATATATAATAAA
98652066 ATATA
1 ATATA
98652071 AGAAGAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 12 0.43
13 4 0.14
14 12 0.43
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (12 bp):
ATATATAATAAA
Found at i:98652223 original size:17 final size:17
Alignment explanation
Indices: 98652203--98652338 Score: 54
Period size: 17 Copynumber: 7.9 Consensus size: 17
98652193 GAATAAATAT
98652203 AATATATAATATATAAA
1 AATATATAATATATAAA
* *
98652220 AATA-A-CATGTACTAAA
1 AATATATAATATA-TAAA
* *
98652236 ACATATA-ATATAGATATA
1 A-ATATATA-ATATATAAA
98652254 AATA-AT-ATATATATAA
1 AATATATAATATATA-AA
*
98652270 AATATATAATAAAAATTAAA
1 AATATATAAT--ATA-TAAA
*
98652290 CATATATAATAATATAATA
1 AATATATAAT-ATATAA-A
*
98652309 GATA-A-AATATAGT-AA
1 AATATATAATATA-TAAA
*
98652324 AATAAATAATATATA
1 AATATATAATATATA
98652339 TAATGAAAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 32
0.67 0.10 0.24
Matches are distributed among these distances:
15 14 0.16
16 18 0.20
17 22 0.24
18 11 0.12
19 10 0.11
20 13 0.14
21 2 0.02
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (17 bp):
AATATATAATATATAAA
Found at i:98652338 original size:43 final size:43
Alignment explanation
Indices: 98652194--98652369 Score: 125
Period size: 43 Copynumber: 4.1 Consensus size: 43
98652184 TAATAATATG
* * *
98652194 AATAAAT-ATAATATATAAT-ATATAA-AAATAACATGTACTAA
1 AATAAATAAT-ATATATAATAATATAATAAATAAAATATAGTAA
* * *
98652235 AACATATAATATAGATATAAATAATAT-ATATATAAAATATA-TAA
1 AATAAATAATAT--ATAT-AATAATATAATAAATAAAATATAGTAA
* *
98652279 TAA-AAATTAAACATATATAATAATATAATAGATAAAATATAGTAA
1 -AATAAA-T-AATATATATAATAATATAATAAATAAAATATAGTAA
* *
98652324 AATAAATAATATATATAATGA-A-AATACATACAACATATAGTAA
1 AATAAATAATATATATAATAATATAATAAATA-AA-ATATAGTAA
98652367 AAT
1 AAT
98652370 GCAAATATAA
Statistics
Matches: 110, Mismatches: 11, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
41 14 0.13
42 5 0.05
43 36 0.33
44 29 0.26
45 22 0.20
46 4 0.04
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.31
Consensus pattern (43 bp):
AATAAATAATATATATAATAATATAATAAATAAAATATAGTAA
Found at i:98654538 original size:206 final size:206
Alignment explanation
Indices: 98654184--98654636 Score: 852
Period size: 206 Copynumber: 2.2 Consensus size: 206
98654174 TACTATGTCC
*
98654184 TCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCCGTATAAACATCT
1 TCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCCGTATAAACATCT
*
98654249 GAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTTGATTTGTTC
66 GAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTC
98654314 TCTGAAAATGCAGAGATGCCAAATCATCTTAGAATTGCTTCAACGTAAACACGTGAAAACCAAAT
131 TCTGAAAATGCAGAGATGCCAAATCATCTTAGAATTGCTTCAACGTAAACACGTGAAAACCAAAT
98654379 CAGCTATGGTT
196 CAGCTATGGTT
98654390 TCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCCGTATAAACATCT
1 TCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCCGTATAAACATCT
98654455 GAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTC
66 GAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTC
* *
98654520 TCTGACAATGCAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAACCAAAT
131 TCTGAAAATGCAGAGATGCCAAATCATCTTAGAATTGCTTCAACGTAAACACGTGAAAACCAAAT
98654585 CAGCTATGGTT
196 CAGCTATGGTT
* *
98654596 TCGATTTGTTCCTTGTAAACACAAGAATACCAAATCTTCTT
1 TCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTT
98654637 AGATTTGCTT
Statistics
Matches: 241, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
206 241 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (206 bp):
TCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCCGTATAAACATCT
GAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTC
TCTGAAAATGCAGAGATGCCAAATCATCTTAGAATTGCTTCAACGTAAACACGTGAAAACCAAAT
CAGCTATGGTT
Found at i:98666956 original size:14 final size:13
Alignment explanation
Indices: 98666937--98666992 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 13
98666927 AAAATATGTA
98666937 ATAATATAAATCAT
1 ATAATATAAAT-AT
98666951 ATAATAATAAAATAT
1 ATAAT-AT-AAATAT
98666966 ATGTAATA-AAATAT
1 A--TAATATAAATAT
98666980 ATAATAT-AATAT
1 ATAATATAAATAT
98666992 A
1 A
98666993 AGAAGAATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
12 11 0.30
14 12 0.32
15 5 0.14
16 5 0.14
17 4 0.11
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (13 bp):
ATAATATAAATAT
Found at i:98666957 original size:17 final size:15
Alignment explanation
Indices: 98666927--98666985 Score: 75
Period size: 14 Copynumber: 3.9 Consensus size: 15
98666917 TTTACAAATA
*
98666927 AAAATATGTAATAAT
1 AAAATATATAATAAT
98666942 ATAAATCATATAATAAT
1 A-AAAT-ATATAATAAT
*
98666959 AAAATATAT-GTAAT
1 AAAATATATAATAAT
98666973 AAAATATATAATA
1 AAAATATATAATA
98666986 TAATATAAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
14 13 0.34
15 7 0.18
16 8 0.21
17 10 0.26
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (15 bp):
AAAATATATAATAAT
Found at i:98666973 original size:34 final size:33
Alignment explanation
Indices: 98666923--98666990 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
98666913 ATAATTTACA
* *
98666923 AATAAAAATATGTAATAATATAAATCATATAAT
1 AATAAAAATATGTAATAAAATAAATAATATAAT
*
98666956 AATAAAATATATGTAATAAAATATATAATATAAT
1 AATAAAA-ATATGTAATAAAATAAATAATATAAT
98666990 A
1 A
98666991 TAAGAAGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 7 0.23
34 24 0.77
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (33 bp):
AATAAAAATATGTAATAAAATAAATAATATAAT
Found at i:98666984 original size:12 final size:12
Alignment explanation
Indices: 98666949--98666992 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
98666939 AATATAAATC
98666949 ATATAATAATAAA
1 ATAT-ATAATAAA
98666962 ATATATGTAATAAA
1 ATATA--TAATAAA
*
98666976 ATATATAATATA
1 ATATATAATAAA
98666988 ATATA
1 ATATA
98666993 AGAAGAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 12 0.43
13 4 0.14
14 12 0.43
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (12 bp):
ATATATAATAAA
Found at i:98667364 original size:18 final size:18
Alignment explanation
Indices: 98667316--98667477 Score: 220
Period size: 18 Copynumber: 8.9 Consensus size: 18
98667306 ATAATCTTCA
98667316 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
* *
98667335 GTGAAATGCAATCTTAGAT
1 ATG-ATTGCAATCTTAGAT
98667354 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
98667372 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
98667389 ATGACTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
98667407 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
98667424 ATGATTGCAATATTAGAT
1 ATGATTGCAATCTTAGAT
98667442 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
98667460 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
98667478 AGATATGATT
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
17 32 0.25
18 67 0.52
19 28 0.22
20 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:98667389 original size:35 final size:35
Alignment explanation
Indices: 98667316--98667477 Score: 225
Period size: 35 Copynumber: 4.5 Consensus size: 35
98667306 ATAATCTTCA
* *
98667316 ATGATATGCAATCTTAGATGTGAAATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATG--ATACAATCTTAGAT
98667354 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
98667389 ATGACTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
* *
98667424 ATGATTGCAATATTAGATATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGA-TACAATCTTAGAT
*
98667460 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
98667478 AGATATGATT
Statistics
Matches: 114, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
35 67 0.59
36 17 0.15
37 25 0.22
38 5 0.04
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:98667410 original size:53 final size:54
Alignment explanation
Indices: 98667324--98667477 Score: 222
Period size: 53 Copynumber: 2.9 Consensus size: 54
98667314 CAATGATATG
* *
98667324 CAATCTTAGATGTGAAATGCAATCTTAGATATGATTGCAATCTTAGATATGA-TA
1 CAATCTTAGATATG-AATGCAATCTTAGATATGATTACAATCTTAGATATGATTA
* *
98667378 CAATCTTAGATATGACTGCAATCTTAGATATGA-TACAATCTTAGATATGATTG
1 CAATCTTAGATATGAATGCAATCTTAGATATGATTACAATCTTAGATATGATTA
* *
98667431 CAATATTAGATATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 CAATCTTAGATATGAATGCAATCTTAGATATGAT-TACAATCTTAGA
98667478 AGATATGATT
Statistics
Matches: 91, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
52 16 0.18
53 50 0.55
54 13 0.14
55 12 0.13
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.36
Consensus pattern (54 bp):
CAATCTTAGATATGAATGCAATCTTAGATATGATTACAATCTTAGATATGATTA
Found at i:98668004 original size:15 final size:16
Alignment explanation
Indices: 98667961--98668019 Score: 50
Period size: 16 Copynumber: 3.5 Consensus size: 16
98667951 CAATATATTT
*
98667961 TATATATTTTATATAA
1 TATATTTTTTATATAA
98667977 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
98667993 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
98668011 TTATATTTT
1 -TATATTTT
98668020 AAATTTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
15 6 0.17
16 10 0.29
17 10 0.29
18 1 0.03
19 8 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:98668023 original size:30 final size:29
Alignment explanation
Indices: 98667954--98668028 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 29
98667944 TCTAAACCAA
98667954 TATATTTT--ATATATTTTATATAATTAT
1 TATATTTTAAATATATTTTATATAATTAT
* *
98667981 TAT-TCTTATAAATATATTTTTTATTATATAT
1 TATAT-TT-TAAATATATTTTATATAAT-TAT
*
98668012 TATATTTTAAATTTATT
1 TATATTTTAAATATATT
98668029 ATTAAATATC
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
26 1 0.03
27 5 0.13
28 1 0.03
30 23 0.59
31 8 0.21
32 1 0.03
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (29 bp):
TATATTTTAAATATATTTTATATAATTAT
Found at i:98668044 original size:26 final size:26
Alignment explanation
Indices: 98667996--98668045 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
98667986 TTATAAATAT
* * * *
98667996 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
98668022 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
98668046 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:98675182 original size:132 final size:132
Alignment explanation
Indices: 98674945--98675345 Score: 694
Period size: 132 Copynumber: 3.0 Consensus size: 132
98674935 CAAAGAAACA
* *
98674945 AGATTTGGCATCCCTGTGTTTATAGGGAATAGTTCGAAGATAACAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
98675010 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
98675075 GC
131 GC
* *
98675077 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAATAGATTTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
* *
98675142 ACAGCGAAGCAAATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAAGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
98675207 GC
131 GC
98675209 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
* * * * * *
98675274 ACAGCGAAGCAGATCGAAGATTTCAGCATGGTATCCCTCTGTTTAAAGGGGACAAGTTGAAGACA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
98675339 GC
131 GC
98675341 AGATT
1 AGATT
98675346 CGACATCTCT
Statistics
Matches: 253, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 253 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:98675269 original size:44 final size:44
Alignment explanation
Indices: 98674931--98675294 Score: 271
Period size: 44 Copynumber: 8.2 Consensus size: 44
98674921 GGGACAATGT
* * *
98674931 AGATCAAAGA-AACAAGATTTGGCATCCCTGTGTTTATAGGGAAT
1 AGATCGAAGATAAC-AGATCTGGCATCCCTGTGTTTATAGGGAAC
* * * * *
98674975 AGTTCGAAGATAACAGATCTGACA-CTCCTGTGCTTACAGCGAAGC
1 AGATCGAAGATAACAGATCTGGCATC-CCTGTGTTTATAGGGAA-C
* **
98675020 AGATCGAGGATTTCAG--CATGGCATCCCTGTGTTTATAGGGAAC
1 AGATCGAAGATAACAGATC-TGGCATCCCTGTGTTTATAGGGAAC
* * *
98675063 A-AGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAAC
1 AGA-TCGAAGATAACAGATCTGGCATCCCTGTGTTTATAGGGAAC
* * * * * *
98675107 AGATCGAAGATAATAGATTTGACA-CTCCTGTGCTTACAGCGAAGC
1 AGATCGAAGATAACAGATCTGGCATC-CCTGTGTTTATAGGGAA-C
* * ** *
98675152 AAATCGAGGATTTCAG--CATGGCATCCCTGTGTTTATAAGGAAC
1 AGATCGAAGATAACAGATC-TGGCATCCCTGTGTTTATAGGGAAC
* * *
98675195 A-AGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAAC
1 AGA-TCGAAGATAACAGATCTGGCATCCCTGTGTTTATAGGGAAC
* * * *
98675239 AGATCGAAGATAACAGATCTGACA-CTCCTGTGCTTACAGCGAAGC
1 AGATCGAAGATAACAGATCTGGCATC-CCTGTGTTTATAGGGAA-C
98675284 AGATCGAAGAT
1 AGATCGAAGAT
98675295 TTCAGCATGG
Statistics
Matches: 249, Mismatches: 52, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
42 2 0.01
43 26 0.10
44 178 0.71
45 43 0.17
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (44 bp):
AGATCGAAGATAACAGATCTGGCATCCCTGTGTTTATAGGGAAC
Found at i:98675388 original size:44 final size:44
Alignment explanation
Indices: 98675340--98675424 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
98675330 TTGAAGACAG
* * *
98675340 CAGATTCGACATCTCTGTATTGTCAGAGAGTAGATCGAAGATAC
1 CAGATTCGACATCTCTGTATTGGCAGAGAGCAGATCAAAGATAC
* * *
98675384 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGA
1 CAGATTCGACATCTCTGTATTGGCAGAGAGCAGATCAAAGA
98675425 CATAGTTGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (44 bp):
CAGATTCGACATCTCTGTATTGGCAGAGAGCAGATCAAAGATAC
Found at i:98676304 original size:39 final size:39
Alignment explanation
Indices: 98676240--98676315 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
98676230 AAATTAACTA
* *
98676240 ATTCGTCAGTGCTACTAAAGTTAACCCTAATCTATTTTC
1 ATTCATCAGCGCTACTAAAGTTAACCCTAATCTATTTTC
*
98676279 ATTCATCAGCGCTACTAAAGTTAACCCTAATTTATTT
1 ATTCATCAGCGCTACTAAAGTTAACCCTAATCTATTT
98676316 AATCCAGATC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.38
Consensus pattern (39 bp):
ATTCATCAGCGCTACTAAAGTTAACCCTAATCTATTTTC
Found at i:98680216 original size:7 final size:7
Alignment explanation
Indices: 98680204--98680241 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
98680194 TTTCTTTTTT
98680204 GGTTTAG
1 GGTTTAG
98680211 GGTTTAG
1 GGTTTAG
98680218 GGTTTAG
1 GGTTTAG
98680225 GGTTTAG
1 GGTTTAG
98680232 GGTTTAG
1 GGTTTAG
98680239 GGT
1 GGT
98680242 AAGTGCACGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.13, C:0.00, G:0.45, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:98684747 original size:7 final size:7
Alignment explanation
Indices: 98684735--98684779 Score: 90
Period size: 7 Copynumber: 6.4 Consensus size: 7
98684725 TTTCTTTTTT
98684735 GGTTTAG
1 GGTTTAG
98684742 GGTTTAG
1 GGTTTAG
98684749 GGTTTAG
1 GGTTTAG
98684756 GGTTTAG
1 GGTTTAG
98684763 GGTTTAG
1 GGTTTAG
98684770 GGTTTAG
1 GGTTTAG
98684777 GGT
1 GGT
98684780 AAGTGCACGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.13, C:0.00, G:0.44, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:98689289 original size:7 final size:7
Alignment explanation
Indices: 98689277--98689307 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
98689267 TTTCTTTTTT
98689277 GGTTTAG
1 GGTTTAG
98689284 GGTTTAG
1 GGTTTAG
98689291 GGTTTAG
1 GGTTTAG
*
98689298 AGTTTAG
1 GGTTTAG
98689305 GGT
1 GGT
98689308 AAGTGCACGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.16, C:0.00, G:0.42, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:98695932 original size:26 final size:26
Alignment explanation
Indices: 98695884--98695934 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
98695874 TCATTATATA
*
98695884 TATTATTTATTTTACTATATTTAATC
1 TATTATTTATTATACTATATTTAATC
*
98695910 TATTATATTATTATA-TATGTTTAAT
1 TATTAT-TTATTATACTATATTTAAT
98695935 TTTTATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (26 bp):
TATTATTTATTATACTATATTTAATC
Found at i:98695957 original size:13 final size:13
Alignment explanation
Indices: 98695935--98695980 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
98695925 TATGTTTAAT
98695935 TTTTAT-TATATA
1 TTTTATATATATA
98695947 TTTTATATATATA
1 TTTTATATATATA
*
98695960 TTATT-TATATCTA
1 TT-TTATATATATA
*
98695973 TATTATAT
1 TTTTATAT
98695981 GTTTTAGCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 8 0.28
13 19 0.66
14 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTTATATATATA
Found at i:98695979 original size:20 final size:21
Alignment explanation
Indices: 98695910--98695980 Score: 67
Period size: 20 Copynumber: 3.4 Consensus size: 21
98695900 ATATTTAATC
* *
98695910 TATTATATTATTATATATGTT
1 TATTATATTATTATATATCTA
*
98695931 TAATT-T-TTATTATATATTTTA
1 T-ATTATATTATTATATA-TCTA
98695952 TATATATATTATT-TATATCTA
1 TAT-TATATTATTATATATCTA
98695973 TATTATAT
1 TATTATAT
98695981 GTTTTAGCAC
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
20 17 0.40
21 12 0.29
22 8 0.19
23 5 0.12
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (21 bp):
TATTATATTATTATATATCTA
Found at i:98697787 original size:18 final size:18
Alignment explanation
Indices: 98697751--98697929 Score: 247
Period size: 18 Copynumber: 9.9 Consensus size: 18
98697741 AATCATATCT
*
98697751 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
*
98697770 TCAAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
98697788 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
98697805 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
98697823 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
98697841 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
98697858 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
98697876 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
* *
98697893 TCTAAGATTGCATACCACA
1 TCTAAGATTGCA-ATCATA
98697912 TCTAAGATTGCATATCAT
1 TCTAAGATTGCA-ATCAT
98697930 TGAAGATTAT
Statistics
Matches: 143, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
17 48 0.34
18 65 0.45
19 30 0.21
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:98697812 original size:35 final size:36
Alignment explanation
Indices: 98697751--98697929 Score: 238
Period size: 35 Copynumber: 5.0 Consensus size: 36
98697741 AATCATATCT
* *
98697751 TCTAAGATTGTATATCATATCAAAGATTGCAATCATA
1 TCTAAGATTG-CTATCATATCTAAGATTGCAATCATA
98697788 TCTAAGATTG-TATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
* *
98697823 TCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
* *
98697858 TCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
* *
98697893 TCTAAGATTGCATACCACATCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCATATCTAAGATTGCA-ATCAT
98697930 TGAAGATTAT
Statistics
Matches: 131, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
35 86 0.66
36 30 0.23
37 10 0.08
38 5 0.04
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (36 bp):
TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
Found at i:98697830 original size:53 final size:54
Alignment explanation
Indices: 98697751--98697929 Score: 274
Period size: 53 Copynumber: 3.3 Consensus size: 54
98697741 AATCATATCT
* *
98697751 TCTAAGATTGTATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
98697805 TCTAAGATTGCA-ATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
* * *
98697858 TCTAAGATTGCA-ATCATATCTAAGATTG-TATCATATCTAAGATTGCATACCACA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTG--TATCATA
98697912 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
98697930 TGAAGATTAT
Statistics
Matches: 117, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
52 16 0.14
53 68 0.58
54 28 0.24
55 5 0.04
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:98697936 original size:88 final size:89
Alignment explanation
Indices: 98697754--98697941 Score: 285
Period size: 88 Copynumber: 2.1 Consensus size: 89
98697744 CATATCTTCT
*
98697754 AAGATTGTATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCAAT
1 AAGATTG-ATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCAAC
* *
98697819 CATATCTAAGATTGCAATCATATCT
65 CACATCTAAGATTGCAATCATATCG
*
98697844 AAGATTG-TATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCATAC
1 AAGATTGATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCA-AC
98697908 CACATCTAAGATTGCATATCAT-T-G
65 CACATCTAAGATTGCA-ATCATATCG
98697932 AAGATT-ATAT
1 AAGATTGATAT
98697942 TTCCATATGA
Statistics
Matches: 91, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
88 62 0.68
89 17 0.19
90 12 0.13
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (89 bp):
AAGATTGATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCAACC
ACATCTAAGATTGCAATCATATCG
Found at i:98698644 original size:205 final size:205
Alignment explanation
Indices: 98698292--98698804 Score: 855
Period size: 205 Copynumber: 2.5 Consensus size: 205
98698282 AAATTAACTT
* * * * * * * **
98698292 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGGTTTAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
* *
98698357 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAAGATGCCAAACCATATT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATACCAAACCATATT
*
98698422 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCCATGTATCTGCTCTCCATTGAAGTGG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCCATGTATCTGCTCTCCATTGAAGTAG
98698487 AGATGCCAGA
196 AGATGCCAGA
98698497 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
1 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
* * *
98698562 ATGAAAGCTAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATACCAAACCATATT
* *
98698627 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCCATGTATCTGCTCTCCATTGAAGTAG
98698692 AGATGCCAGA
196 AGATGCCAGA
*
98698702 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATATGCTTCATCGTAAATAC
1 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
*
98698767 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTT
98698805 CTAACTACCA
Statistics
Matches: 288, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
205 288 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAAGATACCAAACCATATT
GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCCATGTATCTGCTCTCCATTGAAGTAG
AGATGCCAGA
Found at i:98701999 original size:45 final size:45
Alignment explanation
Indices: 98701946--98702091 Score: 133
Period size: 45 Copynumber: 3.3 Consensus size: 45
98701936 AGGATAATGG
98701946 CTTCAATCTGCTTCATCGTAACTTCAGGAAGACAAGATCTACTGT
1 CTTCAATCTGCTTCATCGTAACTTCAGGAAGACAAGATCTACTGT
* * * * *
98701991 CTTCAATCTG-TT--TCGCTACAATCTCAGGGAGGCAAG-GCTAGTGT
1 CTTCAATCTGCTTCATCG-TA-ACT-TCAGGAAGACAAGATCTACTGT
* *
98702035 CTTCAATCTGCTTCA-CTGTAACTTCA-GAGAGACAAAATCTACTAT
1 CTTCAATCTGCTTCATC-GTAACTTCAGGA-AGACAAGATCTACTGT
*
98702080 CTTCAGTCTGCT
1 CTTCAATCTGCT
98702092 CCACTGCAAA
Statistics
Matches: 79, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
42 3 0.04
43 3 0.04
44 28 0.35
45 41 0.52
46 3 0.04
47 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.32
Consensus pattern (45 bp):
CTTCAATCTGCTTCATCGTAACTTCAGGAAGACAAGATCTACTGT
Found at i:98702040 original size:89 final size:89
Alignment explanation
Indices: 98701946--98702250 Score: 355
Period size: 89 Copynumber: 3.4 Consensus size: 89
98701936 AGGATAATGG
* * * *
98701946 CTTCAATCTGCTTCA-TCGTAACTTCAGGAAGACAAGATCTACTGTCTTCAATCTGTTTCGCTAC
1 CTTCAATCTGCTTCACT-GTAACTTCAAGAAGACAAGATCTACTATCTTCAGTCTGATTCGCTAC
* *
98702010 AATCTCAGGGAGGCAAGGCTAGTGT
65 AAACTCAGGGAGGCAAGGCTAGTAT
* * * * *
98702035 CTTCAATCTGCTTCACTGTAACTTC-AGAGAGACAAAATCTACTATCTTCAGTCTGCTCCACTGC
1 CTTCAATCTGCTTCACTGTAACTTCAAGA-AGACAAGATCTACTATCTTCAGTCTGATTCGCTAC
*
98702099 AAACTCAGGGAGGCAAGGCTGGTAT
65 AAACTCAGGGAGGCAAGGCTAGTAT
* * ** * * * *
98702124 CTTCGATCTGATTCACTACAACTTCAAAAAGACAAGATCTACTTTCTTCAGTCT-ACTCTGCTGC
1 CTTCAATCTGCTTCACTGTAACTTCAAGAAGACAAGATCTACTATCTTCAGTCTGATTC-GCTAC
* *
98702188 AAACTCAGGGAGGCAAGGTTGGTAT
65 AAACTCAGGGAGGCAAGGCTAGTAT
*
98702213 CTTCAATCTACTTCACTGTAACTTCAAGAAGACAAGAT
1 CTTCAATCTGCTTCACTGTAACTTCAAGAAGACAAGAT
98702251 TTGCTGAATT
Statistics
Matches: 183, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
88 3 0.02
89 177 0.97
90 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (89 bp):
CTTCAATCTGCTTCACTGTAACTTCAAGAAGACAAGATCTACTATCTTCAGTCTGATTCGCTACA
AACTCAGGGAGGCAAGGCTAGTAT
Found at i:98703505 original size:51 final size:51
Alignment explanation
Indices: 98703441--98703544 Score: 163
Period size: 51 Copynumber: 2.0 Consensus size: 51
98703431 TTTATTTTTA
*
98703441 TTTTTTTACAAGGTCTCAAAGCGTCCTTTGTGAGTTTTCACCTTGGCCCCT
1 TTTTTTTACAAGGTCTCAAAGCGCCCTTTGTGAGTTTTCACCTTGGCCCCT
* * * *
98703492 TTTTTTTAGAAGGTCTCAAAGCGCCCTTTGTGGGTTTTCACTTTGGCCTCT
1 TTTTTTTACAAGGTCTCAAAGCGCCCTTTGTGAGTTTTCACCTTGGCCCCT
98703543 TT
1 TT
98703545 CCCTTTTTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.14, C:0.23, G:0.19, T:0.43
Consensus pattern (51 bp):
TTTTTTTACAAGGTCTCAAAGCGCCCTTTGTGAGTTTTCACCTTGGCCCCT
Found at i:98703752 original size:27 final size:27
Alignment explanation
Indices: 98703714--98703766 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
98703704 TTGTATGGGG
98703714 AAGATCTTTTTCAATACTAGGTCCCCA
1 AAGATCTTTTTCAATACTAGGTCCCCA
98703741 AAGATCTTTTTCAATACTAGGTCCCC
1 AAGATCTTTTTCAATACTAGGTCCCC
98703767 CTCAAGAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.34
Consensus pattern (27 bp):
AAGATCTTTTTCAATACTAGGTCCCCA
Found at i:98713736 original size:61 final size:61
Alignment explanation
Indices: 98713617--98713737 Score: 174
Period size: 60 Copynumber: 2.0 Consensus size: 61
98713607 CTATTCAGAA
* *
98713617 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGTCATAGCCCCTTACAAT
1 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCATTACAAT
* *
98713678 ATCAGAG-TATACTGGGCC-TAGCCCATATCAGTATTAATCTGGGCCGTAGCCCTATTACAA
1 ATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-ATTACAA
98713738 GTCGAGATAT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
60 33 0.61
61 21 0.39
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (61 bp):
ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCATTACAAT
Found at i:98715163 original size:49 final size:49
Alignment explanation
Indices: 98715090--98715376 Score: 326
Period size: 49 Copynumber: 5.8 Consensus size: 49
98715080 TAGCCGAAGC
* *
98715090 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * * *
98715139 AATCTGGTACACGTAGTATCCTGCA-TTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * * *
98715189 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
98715238 TATCCGGTACACGTAATAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* *
98715289 T-TTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCG-GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
98715338 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
98715377 ATTGACCTCA
Statistics
Matches: 195, Mismatches: 36, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
48 16 0.08
49 96 0.49
50 31 0.16
51 52 0.27
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:98715323 original size:100 final size:99
Alignment explanation
Indices: 98715096--98715376 Score: 492
Period size: 100 Copynumber: 2.8 Consensus size: 99
98715086 AAGCTATCTG
* *
98715096 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTATCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT-ATCCGGTACACGTAGTAGCCT
*
98715161 GCA-TTAGTACTACACACGTGATCACAGTTTTCGG
65 GCACTTAGTACTACACACGTGATCACAGTTTTCGA
*
98715195 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACTATCCGGTACACGTAATAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA-TATCCGGTACACGTAGTAGCCT
98715260 GCACTTAGTACTACACACGTGATCACAGTTTTCGA
65 GCACTTAGTACTACACACGTGATCACAGTTTTCGA
98715295 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA-TATCCGGTACACGTAGTAGCCT
98715360 GCACTTAGTACTACACA
65 GCACTTAGTACTACACA
98715377 ATTGACCTCA
Statistics
Matches: 174, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
99 63 0.36
100 111 0.64
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (99 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATATCCGGTACACGTAGTAGCCTG
CACTTAGTACTACACACGTGATCACAGTTTTCGA
Found at i:98719734 original size:19 final size:19
Alignment explanation
Indices: 98719698--98719736 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
98719688 TTTTCATCAT
* *
98719698 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
98719717 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
98719736 A
1 A
98719737 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:98720238 original size:55 final size:56
Alignment explanation
Indices: 98720173--98720287 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
98720163 AGCATGGCTG
* * *
98720173 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
98720229 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
98720284 CCAG
1 CCAG
98720288 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:98720284 original size:28 final size:27
Alignment explanation
Indices: 98720198--98720287 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
98720188 GTGACAGAGT
*
98720198 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
98720227 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
98720254 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
98720282 CACCAG
1 CACCAG
98720288 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:98720441 original size:28 final size:28
Alignment explanation
Indices: 98720394--98720458 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
98720384 AAATTAACCC
*
98720394 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
* *
98720422 TAGGGGTATGATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
98720450 TAGGGGTAT
1 TAGGGGTAT
98720459 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:98721544 original size:12 final size:13
Alignment explanation
Indices: 98721525--98721557 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
98721515 GGGTTCGGCT
98721525 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
98721538 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
98721550 ATGGAGAA
1 ATGGAGAA
98721558 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:98726832 original size:19 final size:19
Alignment explanation
Indices: 98726796--98726834 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
98726786 TTTTCATCAT
* *
98726796 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
98726815 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
98726834 A
1 A
98726835 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:98727380 original size:28 final size:27
Alignment explanation
Indices: 98727295--98727381 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
98727285 GTGACAGAGT
*
98727295 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* ** *
98727324 CACCAGAACACAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
98727351 CACCAGAAAAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
98727379 CAC
1 CAC
98727382 TAGGACGCTT
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
27 21 0.46
28 18 0.39
29 7 0.15
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:98728269 original size:12 final size:13
Alignment explanation
Indices: 98728250--98728282 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
98728240 GGGTTCGGCT
98728250 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
98728263 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
98728275 ATGGAGAA
1 ATGGAGAA
98728283 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:98730573 original size:49 final size:49
Alignment explanation
Indices: 98730500--98730787 Score: 335
Period size: 49 Copynumber: 5.8 Consensus size: 49
98730490 TAGCCGAAGC
* * *
98730500 TATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * * *
98730549 AATCTGGTACACGTAGTCGCCTACACTTAGTACTACACACGTGATCACAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * * *
98730600 TTTCGGGTACGCATAGTAGCCTGCACTTAGCACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
98730649 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* *
98730700 T-TTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCG-GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
98730749 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
98730788 CTTGACCTCA
Statistics
Matches: 200, Mismatches: 33, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
49 114 0.57
50 10 0.05
51 76 0.38
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:98730678 original size:100 final size:100
Alignment explanation
Indices: 98730505--98730788 Score: 496
Period size: 100 Copynumber: 2.8 Consensus size: 100
98730495 GAAGCTATCT
* * * *
98730505 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTCGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
*
98730570 TACACTTAGTACTACACACGTGATCACAATTTTCG
66 TGCACTTAGTACTACACACGTGATCACAATTTTCG
*
98730605 GGTACGCATAGTAGCCTGCACTTAGCACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
*
98730670 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAATTTTCG
*
98730705 AGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
98730770 TGCACTTAGTACTACACAC
66 TGCACTTAGTACTACACAC
98730789 TTGACCTCAC
Statistics
Matches: 175, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 175 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAATTTTCG
Found at i:98732339 original size:20 final size:20
Alignment explanation
Indices: 98732314--98732353 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
98732304 ATATTACATT
98732314 GCCTATATT-AACACAGTTGG
1 GCCTAT-TTCAACACAGTTGG
*
98732334 GCCTATTTCAATACAGTTGG
1 GCCTATTTCAACACAGTTGG
98732354 CCCATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (20 bp):
GCCTATTTCAACACAGTTGG
Found at i:98739178 original size:14 final size:13
Alignment explanation
Indices: 98739155--98739185 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
98739145 TTATTTCATA
98739155 TTATTATTATTTT
1 TTATTATTATTTT
98739168 TTATGTATTATTTT
1 TTAT-TATTATTTT
98739182 TTAT
1 TTAT
98739186 AAATTATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (13 bp):
TTATTATTATTTT
Found at i:98739178 original size:17 final size:18
Alignment explanation
Indices: 98739154--98739202 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
98739144 TTTATTTCAT
*
98739154 ATTATTATTATTTT-T-T
1 ATTATTATTATTTTATAA
98739170 ATGTATTATT-TTTTATAA
1 AT-TATTATTATTTTATAA
98739188 ATTATTATTATTTTA
1 ATTATTATTATTTTA
98739203 CATTATTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
16 6 0.21
17 15 0.54
18 7 0.25
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
ATTATTATTATTTTATAA
Found at i:98739191 original size:14 final size:14
Alignment explanation
Indices: 98739160--98739193 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98739150 TCATATTATT
**
98739160 ATTATTTTTTATGT
1 ATTATTTTTTATAA
98739174 ATTATTTTTTATAA
1 ATTATTTTTTATAA
98739188 ATTATT
1 ATTATT
98739194 ATTATTTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (14 bp):
ATTATTTTTTATAA
Found at i:98739554 original size:21 final size:22
Alignment explanation
Indices: 98739530--98739577 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
98739520 TATATTCATA
98739530 TATATTATAT-AATTATTTTAC
1 TATATTATATAAATTATTTTAC
* *
98739551 TATA-AATATAAATTCTTTTAC
1 TATATTATATAAATTATTTTAC
98739572 -ATATTA
1 TATATTA
98739578 GGTATTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (22 bp):
TATATTATATAAATTATTTTAC
Found at i:98751906 original size:206 final size:206
Alignment explanation
Indices: 98751494--98752199 Score: 995
Period size: 206 Copynumber: 3.4 Consensus size: 206
98751484 TAGGCCACAG
* * * * *
98751494 CATAGCAGATCTCACCTTCAGATGTTTATG-CTGAAGC-AGATCCAAGATGGTTCGGTATCCTTG
1 CATAGCAGATCTCACCTTCAGACGATTA-GACTGAAGCAAGATCCAAGATGATTTGGCATCCTTG
* * *
98751557 TGCTTACAAGGAACAAATCGAAGACATAGCTAATTTGGCTTTCACGTGTTTATGCTGAAGTAAAT
65 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAAT
* * * **
98751622 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGTATCTTCACTTTGAT
130 CTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAAT
*
98751687 GGAGAGTAGATA
195 GGAGAGCAGATA
* *
98751699 CATAGAAGATCTGACCTTCAGACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
1 CATAGCAGATCTCACCTTCAGACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
* * *
98751764 TCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTAAAACAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
* *
98751829 TAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGCCATCTCCACTTCAATA
131 TAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATG
98751894 GAGAGCAGATA
196 GAGAGCAGATA
* *
98751905 CATAGCAGATCTAACCTTCAGACGATTAGACTGAAGTAAGATCCAAGATGATTTGGCATCCTTGT
1 CATAGCAGATCTCACCTTCAGACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
* * **
98751970 GCTTATAAGGAACAAATTGAAGACATAGCTGATTTGGCTTTTGCGTGTTTACGCTGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
* * * * * *
98752035 TAAGATGATTTGTCATCTCTGCT-TTGTCAGAGAACAAATTGAAATTTGGCGTCTCCATCTTCAA
131 TAAGATGATTTGGCATCTCT-ATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCA-CTTCAA
* *
98752099 CGGGGAGCAGATA
194 TGGAGAGCAGATA
** ** *
98752112 CATAGCAGATCTCACCTTCAGATAATTTCACTGAAGCAAGATCCAAGATGATTTGGCATTCTTGT
1 CATAGCAGATCTCACCTTCAGACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
*
98752177 GCTTACAAGGAACAAATCAAAGA
66 GCTTACAAGGAACAAATCGAAGA
98752200 AGCAGATTTG
Statistics
Matches: 446, Mismatches: 51, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
204 1 0.00
205 31 0.07
206 319 0.72
207 95 0.21
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (206 bp):
CATAGCAGATCTCACCTTCAGACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
TAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATG
GAGAGCAGATA
Found at i:98754185 original size:14 final size:13
Alignment explanation
Indices: 98754162--98754192 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
98754152 TTATTTCATA
98754162 TTATTATTATTTT
1 TTATTATTATTTT
98754175 TTATGTATTATTTT
1 TTAT-TATTATTTT
98754189 TTAT
1 TTAT
98754193 AAATTATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (13 bp):
TTATTATTATTTT
Found at i:98754185 original size:17 final size:18
Alignment explanation
Indices: 98754161--98754209 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
98754151 TTTATTTCAT
*
98754161 ATTATTATTATTTT-T-T
1 ATTATTATTATTTTATAA
98754177 ATGTATTATT-TTTTATAA
1 AT-TATTATTATTTTATAA
98754195 ATTATTATTATTTTA
1 ATTATTATTATTTTA
98754210 CATTATTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
16 6 0.21
17 15 0.54
18 7 0.25
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
ATTATTATTATTTTATAA
Found at i:98754198 original size:14 final size:14
Alignment explanation
Indices: 98754167--98754200 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98754157 TCATATTATT
**
98754167 ATTATTTTTTATGT
1 ATTATTTTTTATAA
98754181 ATTATTTTTTATAA
1 ATTATTTTTTATAA
98754195 ATTATT
1 ATTATT
98754201 ATTATTTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (14 bp):
ATTATTTTTTATAA
Found at i:98754267 original size:20 final size:21
Alignment explanation
Indices: 98754244--98754287 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
98754234 CTTGTATTGT
98754244 ATATTTAT-TAATTA-TTTTAC
1 ATATTTATAT-ATTATTTTTAC
98754264 ATA-TTATATATTATTTTTAC
1 ATATTTATATATTATTTTTAC
98754284 ATAT
1 ATAT
98754288 ATACACTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
ATATTTATATATTATTTTTAC
Found at i:98754559 original size:21 final size:22
Alignment explanation
Indices: 98754535--98754582 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
98754525 TATATTCATA
98754535 TATATTATAT-AATTATTTTAC
1 TATATTATATAAATTATTTTAC
* *
98754556 TATA-AATATAAATTCTTTTAC
1 TATATTATATAAATTATTTTAC
98754577 -ATATTA
1 TATATTA
98754583 GGTATTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (22 bp):
TATATTATATAAATTATTTTAC
Found at i:98757129 original size:18 final size:18
Alignment explanation
Indices: 98757098--98757136 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
98757088 AATCAAAGAC
*
98757098 TAATGAAATTTAAAAAATA
1 TAATGAAATATAAAAAA-A
98757117 TAAT-AAATATAAAAAAA
1 TAATGAAATATAAAAAAA
98757134 TAA
1 TAA
98757137 ACAATGTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 11 0.58
19 4 0.21
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (18 bp):
TAATGAAATATAAAAAAA
Found at i:98757526 original size:16 final size:16
Alignment explanation
Indices: 98757502--98757544 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
98757492 ATAATTTTAA
*
98757502 AAAAAAGAATATACAT
1 AAAAGAGAATATACAT
98757518 AAAAGAGAAATATACAT
1 AAAAGAG-AATATACAT
98757535 AAAAGAGAAT
1 AAAAGAGAAT
98757545 TTTAAGAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.36
17 16 0.64
ACGTcount: A:0.67, C:0.05, G:0.12, T:0.16
Consensus pattern (16 bp):
AAAAGAGAATATACAT
Found at i:98757529 original size:17 final size:17
Alignment explanation
Indices: 98757509--98757543 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
98757499 TAAAAAAAAG
98757509 AATATACATAAAAGAGA
1 AATATACATAAAAGAGA
98757526 AATATACATAAAAGAGA
1 AATATACATAAAAGAGA
98757543 A
1 A
98757544 TTTTAAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.06, G:0.11, T:0.17
Consensus pattern (17 bp):
AATATACATAAAAGAGA
Found at i:98758164 original size:21 final size:21
Alignment explanation
Indices: 98758134--98758174 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
98758124 CGGGCCCAAA
* *
98758134 AATAAGTCCAAAAACAAAAAT
1 AATAAATCCAAAAAAAAAAAT
98758155 AATAAATCCAAAAAAAAAAA
1 AATAAATCCAAAAAAAAAAA
98758175 CGAAGTCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.73, C:0.12, G:0.02, T:0.12
Consensus pattern (21 bp):
AATAAATCCAAAAAAAAAAAT
Found at i:98758318 original size:19 final size:19
Alignment explanation
Indices: 98758293--98758364 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
98758283 ATAATCTTCA
98758293 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
98758312 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
98758331 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
98758348 ATGAT-TGCAATCTTAGA
1 ATGATATGCAATCTTAGA
98758365 AGATATGATT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
17 16 0.33
18 10 0.20
19 23 0.47
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:98758333 original size:14 final size:15
Alignment explanation
Indices: 98758314--98758351 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
98758304 TCTTAGATGT
98758314 GATATG-CAATCTTA
1 GATATGACAATCTTA
98758328 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
98758345 GATATGA
1 GATATGA
98758352 TTGCAATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:98759430 original size:13 final size:13
Alignment explanation
Indices: 98759412--98759436 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98759402 CTTTTATCGA
98759412 AATTTGAAAACTC
1 AATTTGAAAACTC
98759425 AATTTGAAAACT
1 AATTTGAAAACT
98759437 ATGATCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (13 bp):
AATTTGAAAACTC
Found at i:98766036 original size:12 final size:12
Alignment explanation
Indices: 98766019--98766043 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98766009 ACTAATAATA
98766019 ATAAAAATTTTC
1 ATAAAAATTTTC
98766031 ATAAAAATTTTC
1 ATAAAAATTTTC
98766043 A
1 A
98766044 AACATATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAAAAATTTTC
Found at i:98768164 original size:60 final size:60
Alignment explanation
Indices: 98768076--98768212 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
98768066 TAGTGTTAAC
*
98768076 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCT-TTAC-AGTATCG-GAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* * *
98768137 TGGGCCTAGCCCATATCAGTATCAATCTGGGTCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
98768197 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
98768213 TAACATAGTC
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
60 54 0.79
61 12 0.18
62 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:98769024 original size:13 final size:13
Alignment explanation
Indices: 98769008--98769032 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98768998 TAGCAACTTA
98769008 TCTGCAAAACTCC
1 TCTGCAAAACTCC
98769021 TCTGCAAAACTC
1 TCTGCAAAACTC
98769033 GACCATTCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.36, G:0.08, T:0.24
Consensus pattern (13 bp):
TCTGCAAAACTCC
Found at i:98772079 original size:44 final size:44
Alignment explanation
Indices: 98772022--98772688 Score: 648
Period size: 44 Copynumber: 15.2 Consensus size: 44
98772012 AATCTAAGAT
* *
98772022 GATTTGGCATCTCTGTATTGTCAGGGAACAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
* * *
98772066 GATTTAGCGTCTCTGTATTGTCAGAGG-GCAGATCAAATATAGCA
1 GATTTGGCGTCTCTGTATTGTCAG-GGAGCAGATCGAAGATAGCA
*
98772110 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
98772154 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
*
98772198 GATTTGGCGTCTCTGTATTGTCAGAGG-GCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAG-GGAGCAGATCGAAGATAGCA
98772242 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
* *
98772286 GATTTGGCGTCTCTGTATTCTCAGAGG-GCAGATTGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAG-GGAGCAGATCGAAGATAGCA
* * * *
98772330 GATTTGGCATCTCTGTATTGTCAGAGAGCATATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
* * * * *
98772374 AATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAG--ATAGCA
* * * * *
98772420 GATTTGGCTTTCACATGT-TTACG-C-TGAAGCAGATCTAAGAT----
1 GATTTGGC-GTCTC-TGTATT--GTCAGGGAGCAGATCGAAGATAGCA
*
98772461 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
* * * ** * * * *
98772505 GATTCGACATCTCAATATTGTTAGAGAGCAAATTGAAGATATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAG--ATAGCA
* * * * *
98772551 GATTTGGCTTTCACGTGT-TTACG-C-TGAAGCAGATCTAAGAT----
1 GATTTGGC-GTCTC-TGTATT--GTCAGGGAGCAGATCGAAGATAGCA
* ** * *
98772592 GATTTGGCGTCTTTGTATTGTCAAAGAGCAGATTGGAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
* * *
98772636 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGACATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAG--ATAGCA
98772682 GATTTGG
1 GATTTGG
98772689 TTTTCACGTG
Statistics
Matches: 514, Mismatches: 75, Indels: 66
0.78 0.11 0.10
Matches are distributed among these distances:
38 2 0.00
39 8 0.02
40 33 0.06
41 16 0.03
43 4 0.01
44 369 0.72
45 10 0.02
46 37 0.07
47 28 0.05
48 5 0.01
49 2 0.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCA
Found at i:98772516 original size:131 final size:129
Alignment explanation
Indices: 98772066--98772815 Score: 798
Period size: 131 Copynumber: 5.7 Consensus size: 129
98772056 GAAGATAGCA
* * * * *
98772066 GATTTAGCGTCTCTGTATTGTCAGAGGGCAGATCAAATATAGCAGATTTGGCGTCTCTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGT
* * * * * *
98772131 CAGAGAGCAGATCGAAG-ATAGCAGATTTGGC-GTCTCTGTATT--GTCAGGGAGCAGATCGAAG
66 CAGAGAGCAAATCGAAGAATAGCAGATTTGGCTTTCACTGT-TTACG-C-TGAAGCAGATCTAAG
98772192 AT
128 AT
* * *
98772194 AGCAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTA
1 ----GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTA
* * * * * * *
98772259 TTGTCAGGGAGCAGATCGAAG-ATAGCAGATTTGGC-GTCTCTGTATT-CTCAGAGGGCAGAT-T
62 TTGTCAGAGAGCAAATCGAAGAATAGCAGATTTGGCTTTCACTGT-TTACGCTGA-AGCAGATCT
98772320 GAAGAT
125 -AAGAT
* * * *
98772326 AGCAGATTTGGCATCTCTGTATTGTCAGAGAGCATATCGAAGATAGTAAATTTGGCATCTCTGTA
1 ----GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTA
*
98772391 TTGTCAGAGAGCAAATTGAAGATATAGCAGATTTGGCTTTCACATGTTTACGCTGAAGCAGATCT
62 TTGTCAGAGAGCAAATCGAAGA-ATAGCAGATTTGGCTTTCAC-TGTTTACGCTGAAGCAGATCT
98772456 AAGAT
125 AAGAT
* * **
98772461 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTCGACATCTCAATATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGT
* *
98772526 TAGAGAGCAAATTGAAGATATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGA
66 CAGAGAGCAAATCGAAGA-ATAGCAGATTTGGCTTTCAC-TGTTTACGCTGAAGCAGATCTAAGA
98772591 T
129 T
* * * *
98772592 GATTTGGCGTCTTTGTATTGTCAAAGAGCAGATTGGAGATAGCAGATTTGGCATCTCTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGT
* **
98772657 CAGAGAGCAAATCGAAGACATAGCAGATTTGGTTTTCACGTGTTTACATTGAAGCAGATCTAAGA
66 CAGAGAGCAAATCGAAGA-ATAGCAGATTTGGCTTTCAC-TGTTTACGCTGAAGCAGATCTAAGA
98772722 T
129 T
* * * * * **
98772723 GATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGA-AACAGATTTGGCATCTCCATATTCG
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATT-G
* * *
98772787 ACAGAGAGTAGATCGAAGACATAGCAGAT
65 TCAGAGAGCAAATCGAAGA-ATAGCAGAT
98772816 CTGACCTTCA
Statistics
Matches: 547, Mismatches: 61, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
130 20 0.04
131 297 0.54
132 192 0.35
134 14 0.03
135 16 0.03
136 8 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (129 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGT
CAGAGAGCAAATCGAAGAATAGCAGATTTGGCTTTCACTGTTTACGCTGAAGCAGATCTAAGAT
Found at i:98773071 original size:78 final size:78
Alignment explanation
Indices: 98772766--98773060 Score: 432
Period size: 78 Copynumber: 3.8 Consensus size: 78
98772756 CGAAGAAACA
** * * *
98772766 GATTTGGCATCTCCATATTCGACAGAGAGTAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
98772831 ACAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
98772844 GATTTGGCATCTCTGTATTAGA-GGAGGAGTAGATCGAAGACACAGCAGATCTGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACAG-GGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGA
98772908 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
98772922 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
98772986 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
98773000 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGACATAGCAGATCTCACCTTCAT
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
98773061 GTGTTTAGAT
Statistics
Matches: 197, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
77 2 0.01
78 192 0.97
79 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:98773198 original size:89 final size:89
Alignment explanation
Indices: 98773093--98773259 Score: 255
Period size: 89 Copynumber: 1.9 Consensus size: 89
98773083 AAGATGACAG
* * * * *
98773093 ATTTGGTATCTTTGTATTAGACGGGGAGTAAATC-AGAGATAACAGATTTGGCATCTCTGTATTA
1 ATTTGGCATCTCTGTATTAGACAGAGAGCAAATCGA-AGATAACAGATTTGGCATCTCTGTATTA
98773157 GACGGGGAGCAGATTAAAGAAGCAA
65 GACGGGGAGCAGATTAAAGAAGCAA
* *
98773182 ATTTGGCATCTCTGTATTAGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAG
1 ATTTGGCATCTCTGTATTAGACAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG
98773247 ACGGGGAGCAGAT
66 ACGGGGAGCAGAT
98773260 CAAATATAGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
89 69 0.99
90 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.28
Consensus pattern (89 bp):
ATTTGGCATCTCTGTATTAGACAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG
ACGGGGAGCAGATTAAAGAAGCAA
Found at i:98773273 original size:45 final size:45
Alignment explanation
Indices: 98773000--98773273 Score: 252
Period size: 45 Copynumber: 6.1 Consensus size: 45
98772990 GATCCAAGAT
* *
98773000 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAG--ATAACA
* * * * * * *
98773047 GATCT--CACCTTCATGTGTTTAGATC--GAAGCAAATCCAAGATGACA
1 GATTTGGCATC-TC-TGT-ATTAGA-CGGGGAGCAGATCAAAGATAACA
* * * * *
98773092 GATTTGGTATCTTTGTATTAGACGGGGAGTAAATCAGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
* *
98773137 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTAAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
* * * *
98773181 AATTTGGCATCTCTGTATTAGACAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
* * *
98773226 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAATATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
98773271 GAT
1 GAT
98773274 ATTGCCTTCC
Statistics
Matches: 180, Mismatches: 38, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
43 1 0.01
44 43 0.24
45 107 0.59
46 3 0.02
47 20 0.11
48 5 0.03
49 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
Found at i:98773551 original size:19 final size:19
Alignment explanation
Indices: 98773526--98773598 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
98773516 ATAATCTTCA
*
98773526 ATGATATGCAATCTTAGAT
1 ATGATATACAATCTTAGAT
*
98773545 GTGATATACAATCTTAGAT
1 ATGATATACAATCTTAGAT
98773564 ATG--ATACAATCTTAGAT
1 ATGATATACAATCTTAGAT
98773581 ATGATATACAATCTTAGA
1 ATGATATACAATCTTAGA
98773599 AGATATGATT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
17 17 0.35
19 32 0.65
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATACAATCTTAGAT
Found at i:98773587 original size:22 final size:20
Alignment explanation
Indices: 98773560--98773607 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
98773550 ATACAATCTT
98773560 AGATATGATACAATCTTAG-
1 AGATATGATACAATCTTAGA
*
98773579 ATATGAT-ATACAATCTTAGA
1 AGAT-ATGATACAATCTTAGA
98773599 AGATATGAT
1 AGATATGAT
98773608 TTTGTAATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (20 bp):
AGATATGATACAATCTTAGA
Found at i:98773634 original size:21 final size:23
Alignment explanation
Indices: 98773590--98773634 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
98773580 TATGATATAC
*
98773590 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
98773613 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
98773634 A
1 A
98773635 GATACCTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:98773925 original size:19 final size:21
Alignment explanation
Indices: 98773888--98773927 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
98773878 TGTTTCCCTG
98773888 ATTTTTTTTATATATATTTTA
1 ATTTTTTTTATATATATTTTA
98773909 ATTTTTTTTA-ATA-ATTTTA
1 ATTTTTTTTATATATATTTTA
98773928 GTATCATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 3 0.16
21 10 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (21 bp):
ATTTTTTTTATATATATTTTA
Found at i:98775663 original size:13 final size:14
Alignment explanation
Indices: 98775645--98775682 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
98775635 TGGTTTATTA
98775645 TTTATTTTTTGG-T
1 TTTATTTTTTGGTT
*
98775658 TTTATTTTGTGGTT
1 TTTATTTTTTGGTT
98775672 TTTATTTTTTG
1 TTTATTTTTTG
98775683 TATGAGTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.08, C:0.00, G:0.16, T:0.76
Consensus pattern (14 bp):
TTTATTTTTTGGTT
Found at i:98777610 original size:12 final size:12
Alignment explanation
Indices: 98777593--98777622 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
98777583 TGCAAATGTA
98777593 ATATATATATAC
1 ATATATATATAC
98777605 ATATATATATAC
1 ATATATATATAC
98777617 ATATAT
1 ATATAT
98777623 TAACAGCGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATATATAC
Found at i:98779332 original size:67 final size:67
Alignment explanation
Indices: 98779249--98779383 Score: 261
Period size: 67 Copynumber: 2.0 Consensus size: 67
98779239 TGCACTTTGA
*
98779249 ATCAAATTTCATGTACAGTTTTGAGTTTTAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
1 ATCAAATTTCATGTACAGTTTTGAGTTTAAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
98779314 AT
66 AT
98779316 ATCAAATTTCATGTACAGTTTTGAGTTTAAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
1 ATCAAATTTCATGTACAGTTTTGAGTTTAAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
98779381 AT
66 AT
98779383 A
1 A
98779384 CTTATTTCAA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.42
Consensus pattern (67 bp):
ATCAAATTTCATGTACAGTTTTGAGTTTAAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
AT
Found at i:98779408 original size:66 final size:65
Alignment explanation
Indices: 98779249--98779400 Score: 209
Period size: 67 Copynumber: 2.3 Consensus size: 65
98779239 TGCACTTTGA
* *
98779249 ATCAAATTTCATGTACAGTTTTGAGTTTTAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
1 ATCAAATTTCAAGT--AGTTTTGAGTTTAAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
98779314 AT
64 AT
*
98779316 ATCAAATTTCATGTACAGTTTTGAGTTTAAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
1 ATCAAATTTCAAGT--AGTTTTGAGTTTAAATCCTTTTTTTAAAGATCAGCCACATTAAATATGT
98779381 AT
64 AT
**
98779383 A-CTTATTTCAAGT-GTTTT
1 ATCAAATTTCAAGTAGTTTT
98779401 ACTGAGTTGG
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
63 5 0.06
66 9 0.11
67 67 0.83
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (65 bp):
ATCAAATTTCAAGTAGTTTTGAGTTTAAATCCTTTTTTTAAAGATCAGCCACATTAAATATGTAT
Found at i:98780161 original size:30 final size:32
Alignment explanation
Indices: 98780108--98780178 Score: 103
Period size: 31 Copynumber: 2.3 Consensus size: 32
98780098 GTAATTTAAC
*
98780108 AATT-GGTGACCAAAAAAGAAAAAT-TCGAAT
1 AATTGGGTGACCAAAAAAGAAAAATGTCAAAT
98780138 AATTGGGTGACCAAAAAAG-AAAATGTCAAAT
1 AATTGGGTGACCAAAAAAGAAAAATGTCAAAT
*
98780169 AGTTGGGTGA
1 AATTGGGTGA
98780179 TCATTTTGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
30 9 0.24
31 28 0.76
ACGTcount: A:0.48, C:0.08, G:0.23, T:0.21
Consensus pattern (32 bp):
AATTGGGTGACCAAAAAAGAAAAATGTCAAAT
Found at i:98780381 original size:25 final size:25
Alignment explanation
Indices: 98780353--98780402 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
98780343 ATTTTCAGAG
98780353 TTAGATTGGATTCATGTGCTATCTT
1 TTAGATTGGATTCATGTGCTATCTT
*
98780378 TTAGTTTGGATTCATGTGCTATCTT
1 TTAGATTGGATTCATGTGCTATCTT
98780403 CCTCTTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.18, C:0.12, G:0.20, T:0.50
Consensus pattern (25 bp):
TTAGATTGGATTCATGTGCTATCTT
Found at i:98783307 original size:12 final size:12
Alignment explanation
Indices: 98783284--98783321 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
98783274 TAAGTCTAAG
*
98783284 AAAATAACAATA
1 AAAATAAAAATA
*
98783296 AATATAAAAATA
1 AAAATAAAAATA
98783308 AAAAT-AAAATA
1 AAAATAAAAATA
98783319 AAA
1 AAA
98783322 CAAATGGACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (12 bp):
AAAATAAAAATA
Found at i:98783307 original size:18 final size:17
Alignment explanation
Indices: 98783284--98783321 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
98783274 TAAGTCTAAG
*
98783284 AAAATAACAATAAATATA
1 AAAATAAAAATAAA-ATA
98783302 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAATA
98783319 AAA
1 AAA
98783322 CAAATGGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:98784937 original size:15 final size:15
Alignment explanation
Indices: 98784919--98785006 Score: 58
Period size: 15 Copynumber: 6.0 Consensus size: 15
98784909 AAAACATACC
98784919 AATAAAAAGAATAAA
1 AATAAAAAGAATAAA
* *
98784934 AATAATAACAAT---
1 AATAAAAAGAATAAA
*
98784946 AATAATAA-AATAGAA
1 AATAAAAAGAATA-AA
* **
98784961 AATAACAAGAATACT
1 AATAAAAAGAATAAA
*
98784976 AATAAAAAGAATAAT
1 AATAAAAAGAATAAA
*
98784991 AATAATAATGAATAAA
1 AATAA-AAAGAATAAA
98785007 TAAAATAAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
11 3 0.05
12 8 0.14
15 35 0.60
16 12 0.21
ACGTcount: A:0.70, C:0.03, G:0.06, T:0.20
Consensus pattern (15 bp):
AATAAAAAGAATAAA
Found at i:98784949 original size:3 final size:3
Alignment explanation
Indices: 98784928--98785024 Score: 67
Period size: 3 Copynumber: 32.7 Consensus size: 3
98784918 CAATAAAAAG
* * * * *
98784928 AAT AAA AAT AAT AAC AAT AAT AAT AA- AAT AGAA AAT AAC AAG AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
* * *
98784973 ACT AAT AAA AAG AAT AAT AAT AAT AAT GAAT AAAT AA- AAT AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT AAT AAT
98785018 AA- AAT AA
1 AAT AAT AA
98785025 ATAAAGAAAA
Statistics
Matches: 73, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
2 8 0.11
3 57 0.78
4 8 0.11
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.22
Consensus pattern (3 bp):
AAT
Found at i:98793051 original size:22 final size:23
Alignment explanation
Indices: 98793014--98793060 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 23
98793004 AGAGGGGAGA
98793014 AGAATAGAACAGAAA-GGAAAAG
1 AGAATAGAACAGAAAGGGAAAAG
98793036 AGAATAGAA-AGAAAAGTGGAAAAG
1 AGAATAGAACAG-AAAG-GGAAAAG
98793060 A
1 A
98793061 AGGTTGGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 2 0.09
22 12 0.55
24 8 0.36
ACGTcount: A:0.64, C:0.02, G:0.28, T:0.06
Consensus pattern (23 bp):
AGAATAGAACAGAAAGGGAAAAG
Found at i:98800627 original size:39 final size:39
Alignment explanation
Indices: 98800567--98800641 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
98800557 CTAGTTAGAG
**
98800567 TGGGCTTGGCATAATTGTACATAGTACGATGAGCAGAAT
1 TGGGCTTGGCATAATCCTACATAGTACGATGAGCAGAAT
98800606 TGGGCTTGGCATAATCCTACATAGTACGATGAGCAG
1 TGGGCTTGGCATAATCCTACATAGTACGATGAGCAG
98800642 GATTCAGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (39 bp):
TGGGCTTGGCATAATCCTACATAGTACGATGAGCAGAAT
Found at i:98803147 original size:16 final size:16
Alignment explanation
Indices: 98803126--98803157 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
98803116 GTTGAACTCT
*
98803126 TTACCACAAGGTTTCA
1 TTACCACAAGGGTTCA
98803142 TTACCACAAGGGTTCA
1 TTACCACAAGGGTTCA
98803158 ACTGACCGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (16 bp):
TTACCACAAGGGTTCA
Done.