Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 310 of 343
Found at i:100714668 original size:14 final size:14
Alignment explanation
Indices: 100714631--100714669 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
100714621 TCAGCGAACA
100714631 AAATATATAAATAT
1 AAATATATAAATAT
*
100714645 AAATAAATAAATAT
1 AAATATATAAATAT
**
100714659 TTATATATAAA
1 AAATATATAAA
100714670 GTTTTACAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAATATATAAATAT
Found at i:100716118 original size:27 final size:27
Alignment explanation
Indices: 100716080--100716133 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
100716070 ATTATCTCAT
100716080 TTAATATTTTTGTTATTTTCACCAAAA
1 TTAATATTTTTGTTATTTTCACCAAAA
100716107 TTAATATTTTTGTTATTTTCACCAAAA
1 TTAATATTTTTGTTATTTTCACCAAAA
100716134 AAAACAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.04, T:0.52
Consensus pattern (27 bp):
TTAATATTTTTGTTATTTTCACCAAAA
Found at i:100729648 original size:6 final size:6
Alignment explanation
Indices: 100729637--100729670 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
100729627 TGGAAACCCA
*
100729637 CTCTTC CTCTTC CTCTTC CTCTTC CTCTTT CTCT
1 CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCT
100729671 ACCCTCCAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (6 bp):
CTCTTC
Found at i:100732358 original size:5 final size:5
Alignment explanation
Indices: 100732346--100732379 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
100732336 GGGAATTTAG
* *
100732346 ATAGA AGAGA AGAGA ATAGA ATAGA ATAGA ATAG
1 ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAG
100732380 GATTAGATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.26, T:0.15
Consensus pattern (5 bp):
ATAGA
Found at i:100740205 original size:305 final size:305
Alignment explanation
Indices: 100739647--100740225 Score: 772
Period size: 305 Copynumber: 1.9 Consensus size: 305
100739637 TGTATATCAT
* * * *
100739647 ATACTAGAAACTCTATCACACGCGTATGCGTGTGGAAACCATATATTTAGAACACAAATTTATGT
1 ATACTAGAAACTCCATCACACGAGTATGCATGTGGAAACCATATAGTTAGAACACAAATTTATGT
* * *
100739712 TTAAAAAAACAACAATAAGAAATGAAATGTGTTATTTGAAACTAATTAATAATCACATGAAATAT
66 TTAAAAAAACAACAATAAGAAATGAAATGTATGATTTGAAACTAATTAATAATAACATGAAATAT
* * * * * *
100739777 GTACAATATTAAAATAAAAAAAAATTGTTTTAAATTGTAAGTAAAACGATATTTAAATACATGAA
131 GTACAATACTAAAAT--AAAAAAATAGTATTAAATTGTAAATAAAACGATATTTAAACACATAAA
* * *
100739842 TACATCAAATTAAGAGGACTAAATGAATATAATTATTTATCATGGTATTGTCATCAATTTTAAGT
194 TACATCAAATTAAAAGGACTAAATGAATACAATTATTTATCATGGTATTGTCATCAATTTCAAGT
100739907 TGGCGTCGAGTTAACTTGTAACACCATCTCAATCAACAACTTTATTA
259 TGGCGTCGAGTTAACTTGTAACACCATCTCAATCAACAACTTTATTA
* * * * *
100739954 ATACTAGAATCTCCATCATATGAGTATGCATGTGGAAACCATGTAGTTA-AAGCACAAATTTGTG
1 ATACTAGAAACTCCATCACACGAGTATGCATGTGGAAACCATATAGTTAGAA-CACAAATTTATG
* *
100740018 TTTAATAATAACATACAATAA-ATAATGAAATGTATGATTTGGAACTAATTAATAATAACATGAA
65 TTTAA-AAAAACA-ACAATAAGA-AATGAAATGTATGATTTGAAACTAATTAATAATAACATGAA
** *
100740082 ATATGTATGATACTAAAAT-AAAAAATAG-ATTAAATTGTAAATAAAA-GTATTTTTAAACACAT
127 ATATGTACAATACTAAAATAAAAAAATAGTATTAAATTGTAAATAAAACG-ATATTTAAACACAT
* * ** *
100740144 AAATACATTAGATTAAAATTATTAAATGAATACAATTATTTATCATGGTATTGTCATCAATTTCA
191 AAATACATCAAATTAAAAGGACTAAATGAATACAATTATTTATCATGGTATTGTCATCAATTTCA
*
100740209 AGTTGGTGTCGAGTTAA
256 AGTTGGCGTCGAGTTAA
100740226 TTTATGGTAC
Statistics
Matches: 235, Mismatches: 32, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
304 1 0.00
305 100 0.43
306 10 0.04
307 57 0.24
308 7 0.03
309 60 0.26
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (305 bp):
ATACTAGAAACTCCATCACACGAGTATGCATGTGGAAACCATATAGTTAGAACACAAATTTATGT
TTAAAAAAACAACAATAAGAAATGAAATGTATGATTTGAAACTAATTAATAATAACATGAAATAT
GTACAATACTAAAATAAAAAAATAGTATTAAATTGTAAATAAAACGATATTTAAACACATAAATA
CATCAAATTAAAAGGACTAAATGAATACAATTATTTATCATGGTATTGTCATCAATTTCAAGTTG
GCGTCGAGTTAACTTGTAACACCATCTCAATCAACAACTTTATTA
Found at i:100743585 original size:3 final size:3
Alignment explanation
Indices: 100743577--100743615 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
100743567 GTATATTAGG
100743577 AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
100743616 CTATATAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:100745295 original size:29 final size:28
Alignment explanation
Indices: 100745246--100745322 Score: 68
Period size: 29 Copynumber: 2.7 Consensus size: 28
100745236 TTTAATATAT
* *
100745246 TATTATATT-ATTATATAATAAAGATATTT
1 TATTGTATTAATTATAT-AT-AAGATATTA
* *
100745275 TA-TGTTTTAATTATAATATAATATATTA
1 TATTGTATTAATTAT-ATATAAGATATTA
100745303 TATTGTATTAATTATTATAT
1 TATTGTATTAATTA-TATAT
100745323 TATATATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
28 13 0.33
29 23 0.59
30 3 0.08
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (28 bp):
TATTGTATTAATTATATATAAGATATTA
Found at i:100745969 original size:47 final size:47
Alignment explanation
Indices: 100745918--100746018 Score: 132
Period size: 47 Copynumber: 2.1 Consensus size: 47
100745908 CTATAAGTGT
** * *
100745918 TGTACTGTTACTG-TTACTTCGGTTTAATCCGATAAGGTACTAAGTAC
1 TGTACTGTTACTGTTTACTTCGG-CAAAGCCGATAAGGCACTAAGTAC
* *
100745965 TGTACTGTTACTGTTTACTTCGGCAAAGCCGATGAGGCACTAAGTGC
1 TGTACTGTTACTGTTTACTTCGGCAAAGCCGATAAGGCACTAAGTAC
100746012 TGTACTG
1 TGTACTG
100746019 GTGTGTTGGT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 38 0.81
48 9 0.19
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.35
Consensus pattern (47 bp):
TGTACTGTTACTGTTTACTTCGGCAAAGCCGATAAGGCACTAAGTAC
Found at i:100752044 original size:5 final size:5
Alignment explanation
Indices: 100752034--100752074 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
100752024 ATGTTTTAAT
* *
100752034 TATAA TATAA TATAA TATAA TATAT TATAT TATATA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATA-A TATAA
100752075 ACTAAAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 29 0.88
6 4 0.12
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (5 bp):
TATAA
Found at i:100752403 original size:22 final size:22
Alignment explanation
Indices: 100752362--100752408 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
100752352 ATATTTGAGT
*
100752362 ATTGGTATTGAATTTAAATTGA
1 ATTGGTATTGAATCTAAATTGA
* * *
100752384 ATTGGTATTTAATCTGAATTTA
1 ATTGGTATTGAATCTAAATTGA
100752406 ATT
1 ATT
100752409 ATTAATTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.49
Consensus pattern (22 bp):
ATTGGTATTGAATCTAAATTGA
Found at i:100754181 original size:15 final size:16
Alignment explanation
Indices: 100754143--100754188 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
100754133 TCTACACTTA
100754143 ATTTATCAATACTTATT
1 ATTT-TCAATACTTATT
*
100754160 ATTTTCAATATTTATT
1 ATTTTCAATACTTATT
*
100754176 -TTTTCAACACTTA
1 ATTTTCAATACTTA
100754189 ATTTTTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 11 0.42
16 11 0.42
17 4 0.15
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTCAATACTTATT
Found at i:100754192 original size:16 final size:16
Alignment explanation
Indices: 100754136--100754195 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
100754126 TTAAAATTCT
*
100754136 ACACTTAA-TTTATCA
1 ACACTTAATTTTTTCA
*
100754151 ATACTT-ATTATTTTCA
1 ACACTTAATT-TTTTCA
* *
100754167 ATA-TTTATTTTTTCA
1 ACACTTAATTTTTTCA
100754182 ACACTTAATTTTTT
1 ACACTTAATTTTTT
100754196 AATCTACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
14 1 0.03
15 16 0.43
16 20 0.54
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (16 bp):
ACACTTAATTTTTTCA
Found at i:100754193 original size:15 final size:15
Alignment explanation
Indices: 100754136--100754194 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
100754126 TTAAAATTCT
*
100754136 ACACTTAATTTATCA
1 ACACTTAATTTTTCA
* *
100754151 ATACTTATTATTTTCA
1 ACACTTAAT-TTTTCA
* * *
100754167 ATATTTATTTTTTCA
1 ACACTTAATTTTTCA
100754182 ACACTTAATTTTT
1 ACACTTAATTTTT
100754195 TAATCTACCA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
15 23 0.64
16 13 0.36
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (15 bp):
ACACTTAATTTTTCA
Found at i:100756708 original size:46 final size:45
Alignment explanation
Indices: 100756652--100756825 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 45
100756642 ATCTTGTAGT
*
100756652 CGATGCATGTCCCAGACATGTCTTATACTAGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAAACATGTCTTATACTAGCTT-CGTCTCGAGGC
* * * * **
100756698 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATAC
1 CGATGCATGTCCCAAACATGTCTTATACTAGC-TTCGTCTCGAGGC
* * * *
100756744 CGATGACATGTCCCAAACATGGTCTTATACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAAACAT-GTCTTATACTAGCT-TCGT-CTCGAGGC
*
100756792 TGATGCATGTCCCAAACATGTCTTATACTAGCTT
1 CGATGCATGTCCCAAACATGTCTTATACTAGCTT
100756826 ATAATAACCC
Statistics
Matches: 106, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 57 0.54
47 28 0.26
48 19 0.18
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAAACATGTCTTATACTAGCTTCGTCTCGAGGC
Found at i:100757833 original size:20 final size:20
Alignment explanation
Indices: 100757797--100757835 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
100757787 CTCTTTGCCG
*
100757797 AAACTATTTCCTTTTTCTTC
1 AAACTATTTCCTGTTTCTTC
100757817 AAACT-TTTCCCTGTTTCTT
1 AAACTATTT-CCTGTTTCTT
100757836 TTATTCATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.18, C:0.26, G:0.03, T:0.54
Consensus pattern (20 bp):
AAACTATTTCCTGTTTCTTC
Found at i:100761752 original size:46 final size:46
Alignment explanation
Indices: 100761686--100761996 Score: 310
Period size: 46 Copynumber: 6.8 Consensus size: 46
100761676 TTCTGAAATG
* *
100761686 AAAAT-TGTAAAACCATGGTTGAAAGATACCATGACAACAGGATAT
1 AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
*
100761731 AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT
1 AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
* *
100761777 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
1 AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
* * * **
100761823 AAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGA-CG
1 AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
** * * * *
100761868 GGAATGA-ATAAGACCATGGTTGAAAGATACCATGGCAA-TGTAACAT
1 AAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACAG-GATAT
* ** ** * *
100761914 GAAATGA-ACAAGACCATGGTTGAAAGATACCATGGCAACCTGACAG
1 AAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
* * *
100761960 AAAATGA-GTAAGACCATAGTTGAAAGACACTATGGCA
1 AAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCA
100761997 TCATGTCAAA
Statistics
Matches: 228, Mismatches: 33, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
45 38 0.17
46 190 0.83
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.21
Consensus pattern (46 bp):
AAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
Found at i:100761840 original size:92 final size:90
Alignment explanation
Indices: 100761692--100761996 Score: 378
Period size: 92 Copynumber: 3.3 Consensus size: 90
100761682 AATGAAAATT
* * *
100761692 GTAAAACCATGGTTGAAAGATACCATGACAACAGGATATAAAATATGTAAGACCATGGTTGAAAG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAG
*
100761757 ATACCATGGCAACATGATATGAAATGT
66 ATACCATGGCAACATGA-A-GAAATGA
100761784 GTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAG
* * *
100761849 ATACCATGACAACATGACGGGAATGA
66 ATACCATGGCAACATGA-AGAAATGA
* * * * * ***
100761875 ATAAGACCATGGTTGAAAGATACCATGGCAA-TGTAACATGAAATGAACAAGACCATGGTTGAAA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACAG-GATATAAAATGTGTAAGACCATGGTTGAAA
*
100761939 GATACCATGGCAACCTGACAGAAAATGA
65 GATACCATGGCAACATGA-AG-AAATGA
* * *
100761967 GTAAGACCATAGTTGAAAGACACTATGGCA
1 GTAAGACCATGGTTGAAAGATACCATGGCA
100761997 TCATGTCAAA
Statistics
Matches: 187, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
90 1 0.01
91 77 0.41
92 109 0.58
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (90 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAG
ATACCATGGCAACATGAAGAAATGA
Found at i:100761932 original size:137 final size:138
Alignment explanation
Indices: 100761685--100761986 Score: 394
Period size: 137 Copynumber: 2.2 Consensus size: 138
100761675 TTTCTGAAAT
* * *
100761685 GAAAAT-TGTAAAACCATGGTTGAAAGATACCATGACAACAGGATATAAAATATGTAAGACCATG
1 GAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGATAGAAAATATATAAGACCATG
* * ***
100761749 GTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
66 GTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCA
*
100761814 ACAGGATA
131 ACAGGACA
* * * **
100761822 TAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGA-CGGGAATGA-ATAAGACCAT
1 GAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGATAGAAAAT-ATATAAGACCAT
**
100761885 GGTTGAAAGATACCATGGCAATGTAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGC
65 GGTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGC
**
100761950 AACCTGACA
130 AACAGGACA
* *
100761959 GAAAATGAGTAAGACCATAGTTGAAAGA
1 GAAAATGTGTAAGACCATGGTTGAAAGA
100761987 CACTATGGCA
Statistics
Matches: 142, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
137 106 0.75
138 36 0.25
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.21
Consensus pattern (138 bp):
GAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGATAGAAAATATATAAGACCATG
GTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCA
ACAGGACA
Found at i:100762303 original size:16 final size:17
Alignment explanation
Indices: 100762282--100762314 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
100762272 ATGATGGAGT
100762282 ATGAAAT-ATTCATATA
1 ATGAAATGATTCATATA
*
100762298 ATGAAATGATTGATATA
1 ATGAAATGATTCATATA
100762315 TACTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.48, C:0.03, G:0.12, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTCATATA
Found at i:100769424 original size:20 final size:20
Alignment explanation
Indices: 100769399--100769437 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
100769389 CTCTTTGCCG
100769399 AAACTTCATCCCT-TTTCTTC
1 AAACTT-ATCCCTGTTTCTTC
*
100769419 AAACTTTTCCCTGTTTCTT
1 AAACTTATCCCTGTTTCTT
100769438 TTATTCATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.18, C:0.31, G:0.03, T:0.49
Consensus pattern (20 bp):
AAACTTATCCCTGTTTCTTC
Found at i:100773064 original size:14 final size:16
Alignment explanation
Indices: 100773045--100773078 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
100773035 ATATTTATTT
100773045 TATTTA-TAATTTA-A
1 TATTTAGTAATTTATA
100773059 TATTTAGTAATTTATA
1 TATTTAGTAATTTATA
100773075 TATT
1 TATT
100773079 AATTATTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 7 0.39
16 5 0.28
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TATTTAGTAATTTATA
Found at i:100773210 original size:17 final size:17
Alignment explanation
Indices: 100773178--100773209 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
100773168 TGTGTTATAA
100773178 ATTACATAATATAAAAT
1 ATTACATAATATAAAAT
100773195 ATTACA-AATATAAAA
1 ATTACATAATATAAAA
100773210 AAAAATTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
ATTACATAATATAAAAT
Found at i:100774122 original size:16 final size:17
Alignment explanation
Indices: 100774085--100774130 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
100774075 AAATATTATA
*
100774085 TAATT-ATATTAAAAGT
1 TAATTAATAATAAAAGT
*
100774101 TTATTAATAATAAAAG-
1 TAATTAATAATAAAAGT
100774117 TAATTAATAATAAA
1 TAATTAATAATAAA
100774131 TATTTCTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 17 0.65
17 9 0.35
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (17 bp):
TAATTAATAATAAAAGT
Found at i:100781675 original size:96 final size:96
Alignment explanation
Indices: 100781491--100781760 Score: 222
Period size: 96 Copynumber: 2.8 Consensus size: 96
100781481 CATCTTCGAG
* * * ** *
100781491 GCCGATGCCATGTCCCGGACATGGTCTTACACTAGCTCTCACATATATGTA--CCGATTTTAAGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--CATA-ATG-AGGCC-AATGCATGT
*
100781554 CCCAGACATGGTCTTACACTGACA-T---AT--CTCGT
61 CCCAGACAT-GTCTTACACTAACACTCACATACCT-GT
* * *
100781586 AGCCGATG-CATGTCCCAGACAT-GTTTTACACTGGCT-TACGT-TTCGAGGCCAATGCATGTCC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GAGGCCAATGCATGTCC
*
100781647 TAGACATGTCTTACACTAACACTCACATACCTGT
63 CAGACATGTCTTACACTAACACTCACATACCTGT
* * * **
100781681 GTCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTGGCTGATGCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCCAATGCATGTCCCAG
100781746 ACATGTCTTACACTA
66 ACATGTCTTACACTA
100781761 GCTCACACAA
Statistics
Matches: 141, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
90 15 0.11
91 15 0.11
92 5 0.04
93 1 0.01
94 20 0.14
95 29 0.21
96 54 0.38
97 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCCAATGCATGTCCCAG
ACATGTCTTACACTAACACTCACATACCTGT
Found at i:100784733 original size:108 final size:105
Alignment explanation
Indices: 100784494--100784710 Score: 353
Period size: 108 Copynumber: 2.0 Consensus size: 105
100784484 ACTGAATAAG
100784494 AAACAGAAGTAATGCATTTCATAATCCCCTCAACCCATTTTGTAGCAAAACCCATGCAAATCATT
1 AAACAGAAGTAATGC---TCATAATCCCCTCAACCCATTTTGTAGCAAAACCCATGCAAATCATT
100784559 ATTCCTTTATGAAACTCTATTTAACCCTATCGTAAGCTTTGCT
63 ATTCCTTTATGAAACTCTATTTAACCCTATCGTAAGCTTTGCT
* *
100784602 AAACAGAAGTAATGCATTTCATAATCCCCTTAACCCATTTTGTAGCAAAACCCATGCGAATCATT
1 AAACAGAAGTAATGC---TCATAATCCCCTCAACCCATTTTGTAGCAAAACCCATGCAAATCATT
100784667 ATTTCCTTTATGAAACTCTATTTAACCCTATCGTAAGCTTTGCT
63 A-TTCCTTTATGAAACTCTATTTAACCCTATCGTAAGCTTTGCT
100784711 CATGTCCAAT
Statistics
Matches: 106, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
108 64 0.60
109 42 0.40
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (105 bp):
AAACAGAAGTAATGCTCATAATCCCCTCAACCCATTTTGTAGCAAAACCCATGCAAATCATTATT
CCTTTATGAAACTCTATTTAACCCTATCGTAAGCTTTGCT
Found at i:100793102 original size:46 final size:45
Alignment explanation
Indices: 100793019--100793134 Score: 110
Period size: 46 Copynumber: 2.5 Consensus size: 45
100793009 GACAAGTGCT
* * * *
100793019 AGTGTCAGACATGTCTGGAACATGCATTGGCCTCGAGACTTAAT-CC
1 AGTGTAAGACATGTCTGGGACATACATCGGCCTCGAGA--TAATACC
* *
100793065 AGTGTAAGACATGTCTGGGACATACGTCGG-CTACGAGATAATAGTC
1 AGTGTAAGACATGTCTGGGACATACATCGGCCT-CGAGATAATA-CC
*
100793111 AGTGCAAGACCATGTCTGGGACAT
1 AGTGTAAGA-CATGTCTGGGACAT
100793135 GGCTTTGACT
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
44 4 0.07
45 2 0.03
46 39 0.66
47 14 0.24
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATACATCGGCCTCGAGATAATACC
Found at i:100794280 original size:21 final size:22
Alignment explanation
Indices: 100794240--100794281 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
100794230 GTCAAATTGA
*
100794240 CCACACGGGCGTGTTGCCCCTT
1 CCACACAGGCGTGTTGCCCCTT
100794262 CCACACAGGCGTG-TGCCCCT
1 CCACACAGGCGTGTTGCCCCT
100794282 ATGTCAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.12, C:0.43, G:0.26, T:0.19
Consensus pattern (22 bp):
CCACACAGGCGTGTTGCCCCTT
Found at i:100797631 original size:46 final size:46
Alignment explanation
Indices: 100797564--100797655 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
100797554 CACTATTCAC
* ** *
100797564 TGATCGGGTAGCCGGAGCTACCATTTTTCACTAATCAAGTAGCCGA
1 TGATCAGGTAGCCAAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * *
100797610 TGATCAGGTAGCCAAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCAAAGCTACCACTTTTCACTAATCAAGTAGCCGA
100797656 AGCTACCACT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (46 bp):
TGATCAGGTAGCCAAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:100797648 original size:31 final size:31
Alignment explanation
Indices: 100797610--100797668 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
100797600 AAGTAGCCGA
100797610 TGATCAGGTAGCCAAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCAAAGCTACCACTTTTCAT
*
100797641 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCAAAGCTACCACTTTT
100797669 TACTTGCCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
TGATCAGGTAGCCAAAGCTACCACTTTTCAT
Found at i:100797743 original size:50 final size:50
Alignment explanation
Indices: 100797648--100797874 Score: 382
Period size: 50 Copynumber: 4.5 Consensus size: 50
100797638 CATTGATCAG
* * * *
100797648 GTAGCCGAAGCTACCACTTTTTACTTGCCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
100797699 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
100797749 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* * *
100797799 GTAGCCAAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
100797849 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
100797875 GTTGCCATGG
Statistics
Matches: 168, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
50 145 0.86
51 23 0.14
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:100802722 original size:31 final size:31
Alignment explanation
Indices: 100802687--100802756 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
100802677 CTTGTCACTT
* * *
100802687 GTAGCCGAAGCTATCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
* * *
100802718 GTAGCCGGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
100802749 GTAGCCGA
1 GTAGCCGA
100802757 TGATCAGGTA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTAATCAA
Found at i:100802778 original size:46 final size:46
Alignment explanation
Indices: 100802711--100802802 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
100802701 CACTATTCAC
* *
100802711 TGATCAGGTAGCCGGAGCTACCATTTTTCACTAATCAAGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * *
100802757 TGATCAGGTAGCCGAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
100802803 AGCTACCACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (46 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:100802795 original size:31 final size:31
Alignment explanation
Indices: 100802757--100802815 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
100802747 AAGTAGCCGA
100802757 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
100802788 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCGAAGCTACCACTTTT
100802816 TACTTGCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAT
Found at i:100802850 original size:19 final size:19
Alignment explanation
Indices: 100802826--100802864 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
100802816 TACTTGCCAT
*
100802826 TTGTCCTTGATTAGATAAG
1 TTGTCCTTGATCAGATAAG
100802845 TTGTCCTTGATCAGATAAG
1 TTGTCCTTGATCAGATAAG
100802864 T
1 T
100802865 GTAGCCGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.41
Consensus pattern (19 bp):
TTGTCCTTGATCAGATAAG
Found at i:100802924 original size:50 final size:50
Alignment explanation
Indices: 100802845--100803040 Score: 365
Period size: 50 Copynumber: 3.9 Consensus size: 50
100802835 ATTAGATAAG
100802845 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAT
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAT
*
100802895 TTGTCCTTGATCAGATAAGTGTAGTCGAAGCTATCACTTATCACTTTCAT
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAT
*
100802945 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAC
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAT
*
100802995 TTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
100803041 GTTGCCATGG
Statistics
Matches: 142, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 142 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (50 bp):
TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAT
Found at i:100807364 original size:46 final size:46
Alignment explanation
Indices: 100807268--100807382 Score: 117
Period size: 46 Copynumber: 2.5 Consensus size: 46
100807258 CAAGTGCTAG
* *
100807268 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAG
1 TGTAAAACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAA
* * **
100807314 TGTAAAACATGCCTGGGACATGCGTCGG-CTACGAGATG-ATAGTTAA
1 TGTAAAACATGTCTGGGACATGCATCGGCCT-CGAGATGTA-AGCCAA
* *
100807360 TGTAAGACCATGTTTGGGACATG
1 TGTAA-AACATGTCTGGGACATG
100807383 GCTTTGACTT
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
45 3 0.05
46 40 0.70
47 14 0.25
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
TGTAAAACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAA
Found at i:100814592 original size:35 final size:35
Alignment explanation
Indices: 100814541--100814611 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
100814531 TGACCCGAAT
*
100814541 TCTAAGAGATTACTTGCATGTCAAGTTAAACAAAA
1 TCTAAGAGATTACTTGCAAGTCAAGTTAAACAAAA
*
100814576 TCTAAGAGATTGCTTGCAAGTCAAGTTAAACAAAA
1 TCTAAGAGATTACTTGCAAGTCAAGTTAAACAAAA
100814611 T
1 T
100814612 ATATTTTCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.28
Consensus pattern (35 bp):
TCTAAGAGATTACTTGCAAGTCAAGTTAAACAAAA
Found at i:100814671 original size:24 final size:24
Alignment explanation
Indices: 100814628--100814677 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
100814618 TCTTTCTAGA
* *
100814628 ATATTTAGTAGTATATTATATTTG
1 ATATTTAGTAGCATAATATATTTG
*
100814652 ATATTTATTAGCATAATATATTTG
1 ATATTTAGTAGCATAATATATTTG
100814676 AT
1 AT
100814678 CTACGAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (24 bp):
ATATTTAGTAGCATAATATATTTG
Found at i:100822916 original size:16 final size:16
Alignment explanation
Indices: 100822892--100822933 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
100822882 GAATAAACTG
* *
100822892 TAATTGAATAGAGTTA
1 TAATAGAATAAAGTTA
*
100822908 TAATAGAATAAAGTTG
1 TAATAGAATAAAGTTA
100822924 TAATA-AATAA
1 TAATAGAATAA
100822934 TTTAATTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.33
Consensus pattern (16 bp):
TAATAGAATAAAGTTA
Found at i:100823180 original size:61 final size:58
Alignment explanation
Indices: 100823115--100823240 Score: 164
Period size: 61 Copynumber: 2.1 Consensus size: 58
100823105 TTTTAATAAG
* * *
100823115 ATTATTATTAAATATATTTTAATAAAAATAAAAATAAATAATTTAATCATATT-TTAACATA
1 ATTATTATTAAATACAATTTAAT-AAAAT---AATAAATAATTTAATAATATTCTTAACATA
* *
100823176 ATTATTATTAAATACAATTTAATAAAATAATATATAATTTAATAATATTCTTAATATA
1 ATTATTATTAAATACAATTTAATAAAATAATAAATAATTTAATAATATTCTTAACATA
100823234 ATTATTA
1 ATTATTA
100823241 ATAATATTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
57 19 0.32
58 14 0.24
60 5 0.08
61 21 0.36
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAATACAATTTAATAAAATAATAAATAATTTAATAATATTCTTAACATA
Found at i:100823218 original size:12 final size:11
Alignment explanation
Indices: 100823191--100823265 Score: 61
Period size: 12 Copynumber: 6.8 Consensus size: 11
100823181 TATTAAATAC
100823191 AATTTAATAA-
1 AATTTAATAAT
100823201 AA--TAATATAT
1 AATTTAATA-AT
100823211 AATTTAATAAT
1 AATTTAATAAT
*
100823222 ATTCTTAAT-AT
1 AAT-TTAATAAT
100823233 AATTATTAATAAT
1 AA-T-TTAATAAT
100823246 -ATTTAATAAT
1 AATTTAATAAT
100823256 AATTTTAATA
1 AA-TTTAATA
100823266 TAAAATTATT
Statistics
Matches: 53, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
8 5 0.09
9 1 0.02
10 12 0.23
11 9 0.17
12 24 0.45
13 2 0.04
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (11 bp):
AATTTAATAAT
Found at i:100823235 original size:22 final size:21
Alignment explanation
Indices: 100823207--100823265 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 21
100823197 ATAAAATAAT
100823207 ATATAA-TTTAATAATATTCTTA
1 ATATAATTTTAATAATA-T-TTA
100823229 ATATAATTATTAATAATATTTA
1 ATATAATT-TTAATAATATTTA
100823251 ATAATAATTTTAATA
1 AT-ATAATTTTAATA
100823266 TAAAATTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
22 17 0.50
23 8 0.24
24 9 0.26
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
ATATAATTTTAATAATATTTA
Found at i:100823559 original size:21 final size:21
Alignment explanation
Indices: 100823533--100823573 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
100823523 TTTTAGTGAA
100823533 ATAAAAA-CATTCAAATTTTAC
1 ATAAAAATCATT-AAATTTTAC
*
100823554 ATAAAAATTATTAAATTTTA
1 ATAAAAATCATTAAATTTTA
100823574 GTAACATTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (21 bp):
ATAAAAATCATTAAATTTTAC
Found at i:100827095 original size:5 final size:6
Alignment explanation
Indices: 100827081--100827105 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
100827071 CCTATCTCTG
100827081 TTTTCT TTTTCT TTTTCT TTTTCT T
1 TTTTCT TTTTCT TTTTCT TTTTCT T
100827106 GCTCAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:100830664 original size:18 final size:19
Alignment explanation
Indices: 100830643--100830679 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
100830633 TAAATAAATT
100830643 TCAA-ATATAAAATATTCA
1 TCAATATATAAAATATTCA
100830661 TCAATTATATAAAATATTC
1 TCAA-TATATAAAATATTC
100830680 TTTAATAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
20 13 0.76
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (19 bp):
TCAATATATAAAATATTCA
Found at i:100831021 original size:9 final size:9
Alignment explanation
Indices: 100831007--100831044 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
100830997 ATTAAATAAA
100831007 CAAACATTT
1 CAAACATTT
100831016 CAAACATTT
1 CAAACATTT
100831025 CAAACATTT
1 CAAACATTT
100831034 CAAACATTT
1 CAAACATTT
100831043 CA
1 CA
100831045 TATCATATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.32
Consensus pattern (9 bp):
CAAACATTT
Found at i:100837761 original size:79 final size:79
Alignment explanation
Indices: 100837630--100837786 Score: 314
Period size: 79 Copynumber: 2.0 Consensus size: 79
100837620 TTCGATACTT
100837630 TACAAAATCATTTCAAAATCCATTACCAATAGACTTCAAAAAGTACTGGATTCTTGTATTGATCT
1 TACAAAATCATTTCAAAATCCATTACCAATAGACTTCAAAAAGTACTGGATTCTTGTATTGATCT
100837695 AGCTCAAAGTACGG
66 AGCTCAAAGTACGG
100837709 TACAAAATCATTTCAAAATCCATTACCAATAGACTTCAAAAAGTACTGGATTCTTGTATTGATCT
1 TACAAAATCATTTCAAAATCCATTACCAATAGACTTCAAAAAGTACTGGATTCTTGTATTGATCT
100837774 AGCTCAAAGTACG
66 AGCTCAAAGTACG
100837787 TTTGTACCGG
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (79 bp):
TACAAAATCATTTCAAAATCCATTACCAATAGACTTCAAAAAGTACTGGATTCTTGTATTGATCT
AGCTCAAAGTACGG
Found at i:100840978 original size:14 final size:14
Alignment explanation
Indices: 100840959--100840986 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100840949 TCGAAAAAGT
100840959 ATAATTTTGATTAA
1 ATAATTTTGATTAA
100840973 ATAATTTTGATTAA
1 ATAATTTTGATTAA
100840987 GTGTTGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
ATAATTTTGATTAA
Found at i:100846345 original size:77 final size:77
Alignment explanation
Indices: 100846258--100846411 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
100846248 ATATGCAGTG
100846258 AACAACATTGTTTCGTCCACTATTTTTAATTTGGATCTTGAAAGTTGAATAACTTAGGATAGGCA
1 AACAACATTGTTTCGTCCACTATTTTTAATTTGGATCTTGAAAGTTGAATAACTTAGGATAGGCA
100846323 ATAGGTCAGTCT
66 ATAGGTCAGTCT
100846335 AACAACATTGTTTCGTCCACTATTTTTAATTTGGATCTTGAAAGTTGAATAACTTAGGATAGGCA
1 AACAACATTGTTTCGTCCACTATTTTTAATTTGGATCTTGAAAGTTGAATAACTTAGGATAGGCA
100846400 ATAGGTCAGTCT
66 ATAGGTCAGTCT
100846412 TTTTAGAATT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.36
Consensus pattern (77 bp):
AACAACATTGTTTCGTCCACTATTTTTAATTTGGATCTTGAAAGTTGAATAACTTAGGATAGGCA
ATAGGTCAGTCT
Found at i:100849439 original size:18 final size:19
Alignment explanation
Indices: 100849418--100849456 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
100849408 AAGAATCAAG
* *
100849418 TTATTTGAGTTAA-TCGAA
1 TTATTCGAGTCAACTCGAA
100849436 TTATTCGAGTCAACTCGAA
1 TTATTCGAGTCAACTCGAA
100849455 TT
1 TT
100849457 TTTTTTTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (19 bp):
TTATTCGAGTCAACTCGAA
Found at i:100853483 original size:29 final size:30
Alignment explanation
Indices: 100853425--100853484 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
100853415 TGTTAGTCAA
* *
100853425 TGACTGTTTTGTCACTTTTTTATAACGTTAG
1 TGACTGTTTTGTCAC-TTTTTAAAAAGTTAG
*
100853456 TGACTGTTTTGTTA-TTTTTAAAAAGTTAG
1 TGACTGTTTTGTCACTTTTTAAAAAGTTAG
100853485 GTGATTGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 13 0.50
31 13 0.50
ACGTcount: A:0.23, C:0.08, G:0.17, T:0.52
Consensus pattern (30 bp):
TGACTGTTTTGTCACTTTTTAAAAAGTTAG
Found at i:100860795 original size:14 final size:15
Alignment explanation
Indices: 100860776--100860808 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
100860766 TAAATTAGAT
*
100860776 AAAATATTAAATA-A
1 AAAATATAAAATATA
100860790 AAAATATAAAATATA
1 AAAATATAAAATATA
100860805 AAAA
1 AAAA
100860809 AAAATTATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AAAATATAAAATATA
Found at i:100860798 original size:21 final size:19
Alignment explanation
Indices: 100860774--100860813 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
100860764 GTTAAATTAG
100860774 ATAAAATATTAAATAAAAAAT
1 ATAAAATA-TAAA-AAAAAAT
100860795 ATAAAATATAAAAAAAAAT
1 ATAAAATATAAAAAAAAAT
100860814 TATGGACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.37
20 4 0.21
21 8 0.42
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (19 bp):
ATAAAATATAAAAAAAAAT
Found at i:100861121 original size:4 final size:4
Alignment explanation
Indices: 100861112--100861143 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
100861102 ATAAGCACAC
100861112 CAAT CAAT CAAT CAAT CAAT CAAT CAAT CAAT
1 CAAT CAAT CAAT CAAT CAAT CAAT CAAT CAAT
100861144 AAGGGCTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CAAT
Found at i:100865755 original size:53 final size:53
Alignment explanation
Indices: 100865667--100865817 Score: 196
Period size: 53 Copynumber: 2.8 Consensus size: 53
100865657 CTTACACGGT
* * * *
100865667 TCACATATCATACCGAAGCCATATCCTAGAC-ATGGTATTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
100865722 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
100865775 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
100865818 GCACACTTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 79 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:100867952 original size:23 final size:23
Alignment explanation
Indices: 100867911--100867971 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 23
100867901 ATCATGTAAA
* *
100867911 ATTCAAAATATTTATAAAATAT-T
1 ATTCAAAA-AATTATAAAACATAT
*
100867934 TTTCTAAAAAATTATAAAACATAT
1 ATTC-AAAAAATTATAAAACATAT
100867958 ATTCAAAAAATTAT
1 ATTCAAAAAATTAT
100867972 TTTTAATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 24 0.75
24 8 0.25
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (23 bp):
ATTCAAAAAATTATAAAACATAT
Found at i:100869854 original size:24 final size:25
Alignment explanation
Indices: 100869821--100869882 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
100869811 ATAAAAAAAT
*
100869821 TACATAAATATATATTGAAAA-TAGA
1 TACAT-AATATATATTGAAAAGCAGA
* * *
100869846 TATATAATA-ATATTTAAAAGCATA
1 TACATAATATATATTGAAAAGCAGA
100869870 TACATAATATATA
1 TACATAATATATA
100869883 CATAACATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 9 0.30
24 14 0.47
25 7 0.23
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (25 bp):
TACATAATATATATTGAAAAGCAGA
Found at i:100869950 original size:15 final size:15
Alignment explanation
Indices: 100869907--100869950 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
100869897 CAAAATATAC
100869907 ACATAATAT-ATTAAA
1 ACATAATATGA-TAAA
*
100869922 ACATATACATGATAAA
1 ACATA-ATATGATAAA
100869938 ACATAATATGATA
1 ACATAATATGATA
100869951 TTTACAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 12 0.48
16 12 0.48
17 1 0.04
ACGTcount: A:0.57, C:0.09, G:0.05, T:0.30
Consensus pattern (15 bp):
ACATAATATGATAAA
Found at i:100871751 original size:45 final size:45
Alignment explanation
Indices: 100871702--100871800 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 45
100871692 CCTCCTATTG
* * * *
100871702 CTTCAATCTGCTCCA-TTGTAGCTTCAGAGAAATAAGATTTGCT-A
1 CTTCAATCTGCTCCACTTGCAACTTCAAAGAAATAAGACTTG-TGA
*
100871746 TCTTCAATCTGCTCCACTTGCAACTTCAAAGAGATAAGACTTGTGA
1 -CTTCAATCTGCTCCACTTGCAACTTCAAAGAAATAAGACTTGTGA
100871792 CTTCAATCT
1 CTTCAATCT
100871801 ATTCCGTTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 25 0.53
46 22 0.47
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.33
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTTGCAACTTCAAAGAAATAAGACTTGTGA
Found at i:100872021 original size:43 final size:41
Alignment explanation
Indices: 100871884--100872033 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 41
100871874 ATTTTCAGCC
* * **
100871884 TGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGCT
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAT--TTGCT
* * * ** *
100871927 CTGTTTCCCTACTGCTTAGGGGTTT-AGATCTGTAAATTCAACC
1 -TGTTACCCTACTGCTTAGGGGTTTAAGGTTTG-AAATT-TGCT
*
100871970 TATTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCT
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTTG-AAATTT-GCT
*
100872013 TGTTACCCTATTGCTTAGGGG
1 TGTTACCCTACTGCTTAGGGG
100872034 GTTGAAGCCC
Statistics
Matches: 82, Mismatches: 20, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
42 23 0.28
43 35 0.43
44 24 0.29
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (41 bp):
TGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAATTTGCT
Found at i:100872036 original size:86 final size:85
Alignment explanation
Indices: 100871877--100872033 Score: 201
Period size: 86 Copynumber: 1.8 Consensus size: 85
100871867 ACATTTGATT
* * ** *
100871877 TTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGCTCTGTTTCCCTACTGC
1 TTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGCTTGAAAT-ATTGCTCTGTTACCCTACTGC
100871942 TTAGGGGTTTAGATCTGTAAA
65 TTAGGGGTTTAGATCTGTAAA
* * *
100871963 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTTTGAAA-ATTTGGCT-TGTTACCCTATTG
1 TTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGCTTGAAATA-TT-GCTCTGTTACCCTACTG
100872026 CTTAGGGG
64 CTTAGGGG
100872034 GTTGAAGCCC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
84 1 0.02
85 21 0.34
86 39 0.64
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (85 bp):
TTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGCTTGAAATATTGCTCTGTTACCCTACTGCT
TAGGGGTTTAGATCTGTAAA
Found at i:100872511 original size:88 final size:87
Alignment explanation
Indices: 100872405--100872568 Score: 249
Period size: 88 Copynumber: 1.9 Consensus size: 87
100872395 TTCACCGTCT
* * *
100872405 TTTGATTTGCTTCCCTACTGCTTAGGGTGATAAGATCTATAAACTTCAGCTTGTTAC-CTTACTG
1 TTTGATCTGCTTCCCTACTACTTAGGGTGATAAGATCTAT-AACTTCAGCCTGTTACGC-TACTG
100872469 CTTAGGGGGTTAAAGCTCGTTGCC
64 CTTAGGGGGTTAAAGCTCGTTGCC
* *
100872493 TTTGATCTGTTTCCCTACTACTTAGGGTGATAAGATCTATATCTTCAGCCTGTTACGCTACTGCT
1 TTTGATCTGCTTCCCTACTACTTAGGGTGATAAGATCTATAACTTCAGCCTGTTACGCTACTGCT
*
100872558 TAGGTGGTTAA
66 TAGGGGGTTAA
100872569 GGTCTGGTGA
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
87 31 0.45
88 38 0.55
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (87 bp):
TTTGATCTGCTTCCCTACTACTTAGGGTGATAAGATCTATAACTTCAGCCTGTTACGCTACTGCT
TAGGGGGTTAAAGCTCGTTGCC
Found at i:100873139 original size:55 final size:55
Alignment explanation
Indices: 100873078--100873252 Score: 323
Period size: 55 Copynumber: 3.2 Consensus size: 55
100873068 ACAAAATTTG
100873078 AAGGGAATAGATTAATCACAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
1 AAGGGAATAGATTAATCACAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
* *
100873133 AAGGGAATAGATTAATCACAGTAAACAAACATTGCTGGAATATAAAATGAATAAA
1 AAGGGAATAGATTAATCACAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
*
100873188 AAGGGAATAGATTAATCACAGTCAACAAACATTACTGGAATACAAAATGAATAAA
1 AAGGGAATAGATTAATCACAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
100873243 AAGGGAATAG
1 AAGGGAATAG
100873253 GTGCCCCAGA
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 115 1.00
ACGTcount: A:0.52, C:0.11, G:0.17, T:0.20
Consensus pattern (55 bp):
AAGGGAATAGATTAATCACAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
Found at i:100885174 original size:35 final size:34
Alignment explanation
Indices: 100885128--100885294 Score: 187
Period size: 35 Copynumber: 4.8 Consensus size: 34
100885118 TTTCCTCATT
*
100885128 GAAATACCATACCTACATTTTACAACTCGGTATGG
1 GAAATACCATACCTACATTTTACAACTCAGTAT-G
*
100885163 GAAATACCATACCTACATTTCT-TAACTCAGTATG
1 GAAATACCATACCTACATTT-TACAACTCAGTATG
* *
100885197 GATAATACCATACCTACGTTTCACAACTCAGTAT-
1 GA-AATACCATACCTACATTTTACAACTCAGTATG
*
100885231 AATTAATACCATACCTACATTTCT-CAACTCAGTATG
1 GA--AATACCATACCTACATTT-TACAACTCAGTATG
* *
100885267 GATGATACCATACCTACATTTCACAACT
1 GA-AATACCATACCTACATTTTACAACT
100885295 TTGCCATGGA
Statistics
Matches: 114, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
34 4 0.04
35 108 0.95
36 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.31
Consensus pattern (34 bp):
GAAATACCATACCTACATTTTACAACTCAGTATG
Found at i:100885243 original size:70 final size:70
Alignment explanation
Indices: 100885130--100885294 Score: 249
Period size: 70 Copynumber: 2.4 Consensus size: 70
100885120 TCCTCATTGA
* * ** *
100885130 AATACCATACCTACATTTTACAACTCGGTATGGGAAATACCATACCTACATTTCTTAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAGTATAAGAAATACCATACCTACATTTCTCAACTCAGTA
100885195 TGGAT
66 TGGAT
* **
100885200 AATACCATACCTACGTTTCACAACTCAGTATAATTAATACCATACCTACATTTCTCAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAGTATAAGAAATACCATACCTACATTTCTCAACTCAGTA
100885265 TGGAT
66 TGGAT
*
100885270 GATACCATACCTACATTTCACAACT
1 AATACCATACCTACATTTCACAACT
100885295 TTGCCATGGA
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 85 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.31
Consensus pattern (70 bp):
AATACCATACCTACATTTCACAACTCAGTATAAGAAATACCATACCTACATTTCTCAACTCAGTA
TGGAT
Found at i:100886327 original size:45 final size:46
Alignment explanation
Indices: 100886263--100886386 Score: 214
Period size: 45 Copynumber: 2.7 Consensus size: 46
100886253 GTCGAAATAG
*
100886263 GGTATCTTTCACCCATGGTCTTACACATTTCATATCATGTTGCC-T
1 GGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAT
* *
100886308 GGTATCTTTCATCCATGGTCTTACACATTTCGTATCATGTTGCCAT
1 GGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAT
100886354 GGTATCTTTCAACCATGGTCTTACACATTTCAT
1 GGTATCTTTCAACCATGGTCTTACACATTTCAT
100886387 TTTAGAAAGC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 42 0.57
46 32 0.43
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
GGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCAT
Found at i:100895584 original size:51 final size:51
Alignment explanation
Indices: 100895508--100895618 Score: 195
Period size: 51 Copynumber: 2.2 Consensus size: 51
100895498 CGGATCACAT
*
100895508 TTATCACTTGTCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* *
100895559 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAGGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
100895610 TTATCACTT
1 TTATCACTT
100895619 ATTACTGACC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:100904650 original size:23 final size:22
Alignment explanation
Indices: 100904591--100904665 Score: 87
Period size: 23 Copynumber: 3.1 Consensus size: 22
100904581 TACCTGATCA
100904591 ATATACGACACATAAATGCCTG
1 ATATACGACACATAAATGCCTG
100904613 AAGCCTGATACGACACATAAAGTGCCTG
1 -A---T-ATACGACACATAAA-TGCCTG
100904641 ATATACGACACATAAAATGCCTG
1 ATATACGACACAT-AAATGCCTG
100904664 AT
1 AT
100904666 CGGCAAAGCC
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
23 20 0.43
24 4 0.09
26 1 0.02
27 15 0.33
28 6 0.13
ACGTcount: A:0.40, C:0.23, G:0.16, T:0.21
Consensus pattern (22 bp):
ATATACGACACATAAATGCCTG
Found at i:100912208 original size:91 final size:91
Alignment explanation
Indices: 100912053--100912231 Score: 313
Period size: 91 Copynumber: 2.0 Consensus size: 91
100912043 TGAGCAGCAC
* *
100912053 TTGAAGATGAACCATGCTTGAAGCTTACTACCATGAAAATGGGAAACTCTTTGTCATTGAAAAAG
1 TTGAAGATGAACCATGCTTGAAGATTACTACCATGAAAATGGGAAACTCATTGTCATTGAAAAAG
* *
100912118 AAGAAAATGTACATTTTGGGATTCAA
66 AAGAAAATATACATTTTGAGATTCAA
100912144 TTGAAGATGAACCATGCTTGAAGATTACTACCATGAAAATGGGAAACTCATTGTCATTGAAAAAG
1 TTGAAGATGAACCATGCTTGAAGATTACTACCATGAAAATGGGAAACTCATTGTCATTGAAAAAG
*
100912209 AATAAAATATACATTTTGAGATT
66 AAGAAAATATACATTTTGAGATT
100912232 TTATTCGTTT
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
91 83 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (91 bp):
TTGAAGATGAACCATGCTTGAAGATTACTACCATGAAAATGGGAAACTCATTGTCATTGAAAAAG
AAGAAAATATACATTTTGAGATTCAA
Found at i:100912783 original size:31 final size:31
Alignment explanation
Indices: 100912748--100912808 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
100912738 TTCCTGCTTT
* *
100912748 AAATCCAACCAAAAATAGCAAATATAGCATG
1 AAATCCAACAAAAAACAGCAAATATAGCATG
*
100912779 AAATCCAACAAAAAACAGCAAATGTAGCAT
1 AAATCCAACAAAAAACAGCAAATATAGCAT
100912809 AAAAAATACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.56, C:0.20, G:0.10, T:0.15
Consensus pattern (31 bp):
AAATCCAACAAAAAACAGCAAATATAGCATG
Found at i:100913073 original size:21 final size:21
Alignment explanation
Indices: 100913049--100913109 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
100913039 TTATGCTCTG
100913049 CTCTG-CTACCCTCGCTGCTAC
1 CTCTGCCT-CCCTCGCTGCTAC
*
100913070 CTCTGCCTCCCTCGCTGCTAT
1 CTCTGCCTCCCTCGCTGCTAC
* *
100913091 CGCTGCCTCCTTCGCTGCT
1 CTCTGCCTCCCTCGCTGCT
100913110 GCATCCGCTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 34 0.94
22 2 0.06
ACGTcount: A:0.05, C:0.48, G:0.16, T:0.31
Consensus pattern (21 bp):
CTCTGCCTCCCTCGCTGCTAC
Found at i:100917262 original size:120 final size:120
Alignment explanation
Indices: 100917131--100917659 Score: 884
Period size: 120 Copynumber: 4.4 Consensus size: 120
100917121 CAAACTTTAG
100917131 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
*
100917196 TTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
*
100917251 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTATATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
*
100917316 TTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
*
100917371 ATTAAATTATATATTTTTATTAAATTATA-TT--TAATAATTATGTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
* *
100917433 TTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAATAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
* *
100917488 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
* * * * * *
100917553 TCATATATTATTATTTTAGTAAATTCAGATAAAAATATTGATTATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
* *
100917608 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTAT-TTTAAAT
100917660 ATGATTAAAT
Statistics
Matches: 386, Mismatches: 19, Indels: 7
0.94 0.05 0.02
Matches are distributed among these distances:
117 110 0.28
118 2 0.01
119 2 0.01
120 267 0.69
121 5 0.01
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
Found at i:100917490 original size:19 final size:19
Alignment explanation
Indices: 100917468--100917517 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
100917458 CATATAAGAA
100917468 TATTTAATATTA-ATAATTT
1 TATTTAA-ATTATATAATTT
*
100917487 TA-TTAAATTATATATTTT
1 TATTTAAATTATATAATTT
100917505 TA-TTAAATTATAT
1 TATTTAAATTATAT
100917518 TTAATAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 4 0.14
18 23 0.79
19 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATTTAAATTATATAATTT
Found at i:100917552 original size:237 final size:237
Alignment explanation
Indices: 100917131--100917645 Score: 859
Period size: 237 Copynumber: 2.2 Consensus size: 237
100917121 CAAACTTTAG
*
100917131 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATA-TT--TAATAATTATGTTAAATTATATTTTATAGTA
**
100917196 TTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTAT
63 TTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTAT
* * *
100917261 ATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTATATAGTATTATATATTA
128 ATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTATATAGTATCATATATTA
* * * *
100917326 TGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
193 TGATTTTAGTAAATTCAGATAAAAATATTGAATATTAAGAATTTT
100917371 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
*
100917436 TATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAATAATTTTATTAAATTATATA
66 TATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATA
* *
100917501 TTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTTTATAGTATCATATATTATTA
131 TTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTATATAGTATCATATATTATGA
*
100917566 TTTTAGTAAATTCAGATAAAAATATTGATTATTAAGAATTTT
196 TTTTAGTAAATTCAGATAAAAATATTGAATATTAAGAATTTT
* *
100917608 ATTAAATTATATATTTTAATTAAAATATATTTAATAAT
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAAT
100917646 AATTATGTTT
Statistics
Matches: 259, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
237 228 0.88
239 2 0.01
240 29 0.11
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (237 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
TATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATA
TTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTATATAGTATCATATATTATGA
TTTTAGTAAATTCAGATAAAAATATTGAATATTAAGAATTTT
Found at i:100917631 original size:18 final size:17
Alignment explanation
Indices: 100917603--100917637 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
100917593 ATTATTAAGA
*
100917603 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
100917620 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
100917638 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:100917892 original size:16 final size:16
Alignment explanation
Indices: 100917871--100917940 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
100917861 TTGATTTGCT
*
100917871 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
100917887 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
100917903 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
100917919 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
100917935 AATACA
1 ATTACA
100917941 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:100927478 original size:70 final size:71
Alignment explanation
Indices: 100927343--100927478 Score: 204
Period size: 70 Copynumber: 1.9 Consensus size: 71
100927333 GGAAAATAAT
* *
100927343 TTGGGGAAGACGCAGTTAGGGAAAATGAGAGAAAAGAAATTGGGTAAATGGGGGAATGAAATCGG
1 TTGGGGAAGACGCAGTTAGGGAAAATCAGAG-AAAGAAATTAGGTAAATGGGGGAATGAAATCGG
100927408 GTTTAAG
65 GTTTAAG
**
100927415 TTGGGGAAGACGCAGTTAGGGAAAATCATTG-AAGAAATTAGG-AAATTGGGGGAATGAAATCGG
1 TTGGGGAAGACGCAGTTAGGGAAAATCAGAGAAAGAAATTAGGTAAA-TGGGGGAATGAAATCGG
100927478 G
65 G
100927479 GTAATCAGAT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
69 3 0.05
70 28 0.47
72 28 0.47
ACGTcount: A:0.38, C:0.05, G:0.37, T:0.20
Consensus pattern (71 bp):
TTGGGGAAGACGCAGTTAGGGAAAATCAGAGAAAGAAATTAGGTAAATGGGGGAATGAAATCGGG
TTTAAG
Found at i:100927844 original size:115 final size:115
Alignment explanation
Indices: 100927642--100927905 Score: 318
Period size: 115 Copynumber: 2.3 Consensus size: 115
100927632 GTTTTAAACA
* * * * * *
100927642 TTTTGCACAATCGTAAAACACTTTTGCGGTGTTTTATGAGAAAATGCCACTAAAGGATATCCTTT
1 TTTTGCACACTCTTAAAACACTTTTGCGGCGTTTAATGAGAAAACGCCACTAAAAGATATCCTTT
* *
100927707 TGCGGCGTTTTAGTAAAAACGCCACTAATAGGCAGACAAAAACGACAGCC
66 TGCGGCGTTTTACTAAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
* * * *
100927757 TTTTGCACACTCTTAAAACATTTTTCGTGGCGTTTAATGAGAAAACGCCACTAAAAGCT-TCTTT
1 TTTTGCACACTCTTAAAACACTTTT-GCGGCGTTTAATGAGAAAACGCCACTAAAAGATATCCTT
** *
100927821 TTGCGGCG-TTTACTAAAAAACGCCACTAATAGTTAGAAAAAAACGACAGCG
65 TTGCGGCGTTTTACT-AAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
* * *
100927872 TTTTCCACACGCTTAAAATA-TATTTGCGGCGTTT
1 TTTTGCACACTCTTAAAACACT-TTTGCGGCGTTT
100927906 TCTTAAAAAT
Statistics
Matches: 127, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
114 14 0.11
115 86 0.68
116 27 0.21
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (115 bp):
TTTTGCACACTCTTAAAACACTTTTGCGGCGTTTAATGAGAAAACGCCACTAAAAGATATCCTTT
TGCGGCGTTTTACTAAAAACGCCACTAATAGGCAGAAAAAAACGACAGCC
Found at i:100928378 original size:22 final size:22
Alignment explanation
Indices: 100928333--100928380 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
100928323 TATGAATTTT
* * **
100928333 TTTAAGATTTTAGGGTTTTTGG
1 TTTAAGAGTTTAGAGTTTAGGG
100928355 TTTAAGAGTTTAGAGTTTAGGG
1 TTTAAGAGTTTAGAGTTTAGGG
100928377 TTTA
1 TTTA
100928381 TAGTTTAAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (22 bp):
TTTAAGAGTTTAGAGTTTAGGG
Found at i:100928385 original size:14 final size:14
Alignment explanation
Indices: 100928341--100928393 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
100928331 TTTTTAAGAT
* *
100928341 TTTAGGGTTTTTGG
1 TTTAGGGTTTATAG
* *
100928355 TTTAAGAGTTTAGAG
1 TTT-AGGGTTTATAG
100928370 TTTAGGGTTTATAG
1 TTTAGGGTTTATAG
*
100928384 TTTAAGGTTT
1 TTTAGGGTTT
100928394 GGGATTTAAG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
14 21 0.68
15 10 0.32
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (14 bp):
TTTAGGGTTTATAG
Found at i:100928386 original size:29 final size:28
Alignment explanation
Indices: 100928341--100928436 Score: 86
Period size: 29 Copynumber: 3.3 Consensus size: 28
100928331 TTTTTAAGAT
* *
100928341 TTTAGGGTTTTTGGTTTAAGAGTTTAGAG
1 TTTAGGGTTTATAGTTTAAG-GTTTAGAG
*
100928370 TTTAGGGTTTATAGTTTAAGGTTT-GGG
1 TTTAGGGTTTATAGTTTAAGGTTTAGAG
* **
100928397 ATTTAAGGTCCATAGTTTATAGGTTTAGAGG
1 -TTTAGGGTTTATAGTTTA-AGGTTTAGA-G
*
100928428 TTAAGGGTT
1 TTTAGGGTT
100928437 AGGAGTTAGG
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
27 2 0.04
28 19 0.36
29 24 0.45
30 7 0.13
31 1 0.02
ACGTcount: A:0.23, C:0.02, G:0.30, T:0.45
Consensus pattern (28 bp):
TTTAGGGTTTATAGTTTAAGGTTTAGAG
Found at i:100928393 original size:21 final size:21
Alignment explanation
Indices: 100928361--100928401 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
100928351 TTGGTTTAAG
100928361 AGTTTAGAGTTTAGGG-TTTAT
1 AGTTTAGAGTTT-GGGATTTAT
100928382 AGTTTA-AGGTTTGGGATTTA
1 AGTTTAGA-GTTTGGGATTTA
100928402 AGGTCCATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.46
Consensus pattern (21 bp):
AGTTTAGAGTTTGGGATTTAT
Found at i:100928445 original size:21 final size:21
Alignment explanation
Indices: 100928421--100928470 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
100928411 GTTTATAGGT
100928421 TTAGAGGTTAA-GGGTTAGGAG
1 TTAG-GGTTAATGGGTTAGGAG
*
100928442 TTAGGGTTAATGGGTTAGGAT
1 TTAGGGTTAATGGGTTAGGAG
100928463 TTATGGGT
1 TTA-GGGT
100928471 CTAGTTGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.23
21 16 0.62
22 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.40, T:0.36
Consensus pattern (21 bp):
TTAGGGTTAATGGGTTAGGAG
Found at i:100929038 original size:15 final size:15
Alignment explanation
Indices: 100928988--100929053 Score: 57
Period size: 15 Copynumber: 4.5 Consensus size: 15
100928978 AATCATAAAA
100928988 CATAAA-CCATCAA-C
1 CATAAACCCAT-AATC
* *
100929002 CATAAACCC-CAACC
1 CATAAACCCATAATC
*
100929016 CTTAAACCCATAATC
1 CATAAACCCATAATC
* *
100929031 CCTAAACCCATCATC
1 CATAAACCCATAATC
100929046 CATAAACC
1 CATAAACC
100929054 TTAAAATAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
13 2 0.05
14 15 0.36
15 25 0.60
ACGTcount: A:0.42, C:0.41, G:0.00, T:0.17
Consensus pattern (15 bp):
CATAAACCCATAATC
Found at i:100931044 original size:21 final size:21
Alignment explanation
Indices: 100931020--100931069 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
100931010 TGCTTCTGAT
100931020 GGTTGTGGTGGCAAAGGTGGA
1 GGTTGTGGTGGCAAAGGTGGA
****
100931041 GGTTGTGGTGGTGGGGGTGGA
1 GGTTGTGGTGGCAAAGGTGGA
100931062 GGTTGTGG
1 GGTTGTGG
100931070 GGGTGGGGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.10, C:0.02, G:0.60, T:0.28
Consensus pattern (21 bp):
GGTTGTGGTGGCAAAGGTGGA
Found at i:100931064 original size:27 final size:27
Alignment explanation
Indices: 100931034--100931088 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
100931024 GTGGTGGCAA
** *
100931034 AGGTGGAGGTTGTGGTGGTGGGGGTGG
1 AGGTGGAGGGGGTGGGGGTGGGGGTGG
* *
100931061 AGGTTGTGGGGGTGGGGGTGGGGGTGG
1 AGGTGGAGGGGGTGGGGGTGGGGGTGG
100931088 A
1 A
100931089 TGTTGATGAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.07, C:0.00, G:0.69, T:0.24
Consensus pattern (27 bp):
AGGTGGAGGGGGTGGGGGTGGGGGTGG
Found at i:100931074 original size:21 final size:21
Alignment explanation
Indices: 100931035--100931081 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
100931025 TGGTGGCAAA
*
100931035 GGTGGAGGTTGTGGTGGTGGG
1 GGTGGAGGTTGTGGGGGTGGG
100931056 GGTGGAGGTTGTGGGGGTGGG
1 GGTGGAGGTTGTGGGGGTGGG
100931077 GGTGG
1 GGTGG
100931082 GGGTGGATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.04, C:0.00, G:0.70, T:0.26
Consensus pattern (21 bp):
GGTGGAGGTTGTGGGGGTGGG
Found at i:100931083 original size:5 final size:6
Alignment explanation
Indices: 100931045--100931087 Score: 50
Period size: 6 Copynumber: 6.7 Consensus size: 6
100931035 GGTGGAGGTT
*
100931045 GTGGTG GTGGGG GTGGAGG TTGTGGGG GTGGGG GTGGGG GTGG
1 GTGGGG GTGGGG GTGG-GG --GTGGGG GTGGGG GTGGGG GTGG
100931088 ATGTTGATGA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
6 25 0.76
7 2 0.06
8 2 0.06
9 4 0.12
ACGTcount: A:0.02, C:0.00, G:0.74, T:0.23
Consensus pattern (6 bp):
GTGGGG
Found at i:100936774 original size:38 final size:38
Alignment explanation
Indices: 100936732--100936810 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
100936722 CCCAAAACCT
100936732 AAAAGCTAAAATGAAAGCAATATAAATAAAAGAAGAAG
1 AAAAGCTAAAATGAAAGCAATATAAATAAAAGAAGAAG
100936770 AAAAGCTAAAATGAAAGCAATATAAATAAAAGAAGAAG
1 AAAAGCTAAAATGAAAGCAATATAAATAAAAGAAGAAG
100936808 AAA
1 AAA
100936811 GAAGGAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.67, C:0.05, G:0.15, T:0.13
Consensus pattern (38 bp):
AAAAGCTAAAATGAAAGCAATATAAATAAAAGAAGAAG
Found at i:100937857 original size:14 final size:14
Alignment explanation
Indices: 100937838--100937871 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
100937828 ACTCAACAGA
100937838 AGCCCACCTAAGCT
1 AGCCCACCTAAGCT
100937852 AGCCCACCTAAGCT
1 AGCCCACCTAAGCT
100937866 AGCCCA
1 AGCCCA
100937872 ATCCCGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.44, G:0.15, T:0.12
Consensus pattern (14 bp):
AGCCCACCTAAGCT
Found at i:100939072 original size:24 final size:24
Alignment explanation
Indices: 100939042--100939157 Score: 67
Period size: 24 Copynumber: 4.7 Consensus size: 24
100939032 TTCTTAATAT
100939042 TATATTATGTATATATTCTTTTAA
1 TATATTATGTATATATTCTTTTAA
* * *** *
100939066 TATATTAGGTATATTTTAAATT-C
1 TATATTATGTATATATTCTTTTAA
* *
100939089 TATATTACGTATATATATATTTTTATA
1 TATATTATGTATATAT-T-CTTTTA-A
* *
100939116 CTATATTATGTATACATTC-TTAAA
1 -TATATTATGTATATATTCTTTTAA
100939140 TATTATTA-GTTATATATT
1 TA-TATTATG-TATATATT
100939158 TTTATATTAT
Statistics
Matches: 68, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
23 17 0.25
24 31 0.46
25 5 0.07
27 1 0.01
28 14 0.21
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (24 bp):
TATATTATGTATATATTCTTTTAA
Found at i:100939525 original size:29 final size:25
Alignment explanation
Indices: 100939493--100939579 Score: 75
Period size: 25 Copynumber: 3.2 Consensus size: 25
100939483 TTTTTAATAC
*
100939493 TATATTTTTAATACCATATATATATTGTG
1 TATATTTTTAATA-C-TA-A-ATATTGTA
*
100939522 TATATTCTTAATACTAAATATTGTA
1 TATATTTTTAATACTAAATATTGTA
* *
100939547 TGTATTTTTAATAACTATATTATATGTA
1 TATATTTTTAAT-ACTA-AATAT-TGTA
100939575 TATAT
1 TATAT
100939580 ATTATGTACG
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
25 17 0.35
26 5 0.10
27 6 0.12
28 9 0.18
29 12 0.24
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.52
Consensus pattern (25 bp):
TATATTTTTAATACTAAATATTGTA
Found at i:100951100 original size:72 final size:74
Alignment explanation
Indices: 100950949--100951101 Score: 195
Period size: 75 Copynumber: 2.1 Consensus size: 74
100950939 AATTTCTGTC
* * * *
100950949 TTTCAAAAATCAACTCATATTGTGTAAAGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTC
1 TTTCAAAAATCAACTCATATGGCGTAAAGTGAGTTGAACCTCAGG-CACACGCCGAGGTATTTTC
*
100951014 AATTTATGTT
65 AAATTATGTT
* * *
100951024 TTTCAAAAATCAACTCGTATGGCG-AGAGGTGAGTTGAACCTC-GG-ACATGCCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATGGCGTA-AAGTGAGTTGAACCTCAGGCACACGCCGAGGTATTTTC
100951086 AAATTATGTT
65 AAATTATGTT
100951096 TTTCAA
1 TTTCAA
100951102 TTTATGTTTT
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
72 31 0.45
74 3 0.04
75 35 0.51
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (74 bp):
TTTCAAAAATCAACTCATATGGCGTAAAGTGAGTTGAACCTCAGGCACACGCCGAGGTATTTTCA
AATTATGTT
Found at i:100951112 original size:13 final size:14
Alignment explanation
Indices: 100951081--100951111 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
100951071 TGCCGAGGTA
100951081 TTTTCAAATTATGT
1 TTTTCAAATTATGT
*
100951095 TTTTCAATTTATGT
1 TTTTCAAATTATGT
100951109 TTT
1 TTT
100951112 CCCAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (14 bp):
TTTTCAAATTATGT
Found at i:100951315 original size:161 final size:161
Alignment explanation
Indices: 100951114--100951434 Score: 493
Period size: 161 Copynumber: 2.0 Consensus size: 161
100951104 TATGTTTTCC
* *
100951114 CAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAA
1 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAAGCTGAGGTATTTTCAA
* * *
100951179 TTTCTGTTTTT-TATTTTTGTT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTA
66 TTTCTGTTTTTCAATTTCTGTTCTT--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
100951242 AGACACGTTGAAGTAATTTTAATTTATGTTCAT
129 AGACACGCTGAAGTAATTTTAATTTATGTTCAT
100951275 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAAGCTGAGGTATTTTCAA
1 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAAGCTGAGGTATTTTCAA
* *
100951340 TTTCTGTTTTTCAATTTCTGTTCGTTAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAG
66 TTTCTGTTTTTCAATTTCTGTTC-TTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
** * *
100951405 GATGCGCTGAGGTAATTTTAATTTCTGTTC
130 GACACGCTGAAGTAATTTTAATTTATGTTC
100951435 TTTAATTTAT
Statistics
Matches: 145, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
161 74 0.51
162 69 0.48
164 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (161 bp):
CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAAGCTGAGGTATTTTCAA
TTTCTGTTTTTCAATTTCTGTTCTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
ACACGCTGAAGTAATTTTAATTTATGTTCAT
Found at i:100951352 original size:14 final size:14
Alignment explanation
Indices: 100951333--100951361 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
100951323 AGCTGAGGTA
100951333 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
100951347 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
100951361 T
1 T
100951362 CGTTAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:100951483 original size:89 final size:86
Alignment explanation
Indices: 100951258--100951525 Score: 326
Period size: 89 Copynumber: 3.0 Consensus size: 86
100951248 GTTGAAGTAA
* *
100951258 TTTTAATTTATGTTCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCAC
1 TTTTAATTTATGTTCA-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAT-AC
100951322 AAGCTGAGGT-ATTTTCAATTTCTGT
64 --GCTGAGGTAATTTT-AATTTCTGT
* *** * *
100951347 TTTTCAATTTCTGTTC-GTTAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGATGCG
1 TTTT-AATTTATGTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACG
100951411 CTGAGGTAATTTTAATTTCTGT
65 CTGAGGTAATTTTAATTTCTGT
* * *
100951433 TCTTTAATTTATGTTTCAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACA
1 T-TTTAATTTATG-TTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATA
*
100951498 CGCTGAGGTATTTTTAATTTCTGT
63 CGCTGAGGTAATTTTAATTTCTGT
100951522 TTTT
1 TTTT
100951526 CGTCAAAATT
Statistics
Matches: 155, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
86 25 0.16
87 11 0.07
88 40 0.26
89 69 0.45
90 10 0.06
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (86 bp):
TTTTAATTTATGTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGC
TGAGGTAATTTTAATTTCTGT
Found at i:100951558 original size:252 final size:248
Alignment explanation
Indices: 100950935--100951655 Score: 803
Period size: 252 Copynumber: 2.9 Consensus size: 248
100950925 TACTCGGATG
* * *
100950935 TTTTAATTTCTGTCTTTCAAAAATCAACTCATATTGTGTA-AAGTGAGTTGAGCCTCAGGTCACA
1 TTTTAATTTATGT-TTTCAAAAATCAACTCATATTGCG-AGAGGTGAGTTGAGCCTCAGG--ACA
* * * *
100950999 CGCTGAGGTATTTTCAATTTATGTTTTTCAAAAATCAACTCGTATGGCGAGAGGTGAGTTGAACC
62 CGCTGAGGTATTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
100951064 TCGG--ACATGCCGAGGTATTTTCAAATTATGTTTTTCAATTTATGTTTTCCCAAAAAATCAATT
127 TCGGTCACATGCCGAGGTATTTTCAAATTCTGTTTTTCAATTTATG-TTTCCCAAAAAATCAACT
*
100951127 CATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATTTCTGT
191 CATATTGCGAGAGGTGAGTTGAGCCTCGGATCACA-GCTGAGGTATTTTCAATTTCTGT
* * * * *
100951186 TTTTTATTTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGACACGTT
1 TTTTAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* * **
100951251 GAAGTAATTTTAATTTATGTTCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66 GAGGTATTTTTAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* * * * *** *
100951316 GCTCACAAGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTG-TT-CGTTAAAATCAACTCGT
130 G-TCACATGCCGAGGTATTTTCAAATTCTGTTTTTCAATTTATGTTTCCCAAAAAATCAACTCAT
*
100951379 ATTGCGAGAGGTGAGTTGAGCCTCAGGAT-GC-GCTGAGGTAATTTT-AATTTCTGT
194 ATTGCGAGAGGTGAGTTGAGCCTC-GGATCACAGCTGAGGT-ATTTTCAATTTCTGT
* *
100951433 TCTTTAATTTATG-TTTCAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGGAC
1 T-TTTAATTTATGTTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* * *
100951497 ACGCTGAGGTATTTTTAATTTCTGTTTTTCGTCAAAATTAACTCATATTGCGAGAGGTGAGTTGA
61 ACGCTGAGGTATTTTTAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * * * **
100951562 GCCTCGGGTCACATGCCCAGTTATTTTCAAATTCTGGTTTTTTTTTAATGTCTGTTTTTCAAAAA
124 GCCTC-GGTCACATGCCGAGGTATTTTCAAATTCT-G---TTTTTCAATTTATGTTTCCCAAAAA
* *
100951627 ATCAACTCATATCGCAAGAGGTGAGTTGA
184 ATCAACTCATATTGCGAGAGGTGAGTTGA
100951656 ACCCAGGGTC
Statistics
Matches: 394, Mismatches: 56, Indels: 33
0.82 0.12 0.07
Matches are distributed among these distances:
247 22 0.06
248 40 0.10
249 75 0.19
250 44 0.11
251 74 0.19
252 93 0.24
253 3 0.01
256 12 0.03
257 2 0.01
258 29 0.07
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (248 bp):
TTTTAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTATTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
TCACATGCCGAGGTATTTTCAAATTCTGTTTTTCAATTTATGTTTCCCAAAAAATCAACTCATAT
TGCGAGAGGTGAGTTGAGCCTCGGATCACAGCTGAGGTATTTTCAATTTCTGT
Found at i:100951793 original size:45 final size:45
Alignment explanation
Indices: 100951701--100951794 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
100951691 GGAGCTGATT
*
100951701 GAAGACACCAGATTTTGCCTCCCTAAAGTTGCAGCGGAACTGATC
1 GAAGACACCAGATTTTGCCTCCCTAAAGTTGCAGCGGAACAGATC
* * * * * *
100951746 GAAGACACTAGATTTTGCCTCCTTGAAGTTGCAGTGGAGCAGGTC
1 GAAGACACCAGATTTTGCCTCCCTAAAGTTGCAGCGGAACAGATC
100951791 GAAG
1 GAAG
100951795 TTGCAAGTCT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (45 bp):
GAAGACACCAGATTTTGCCTCCCTAAAGTTGCAGCGGAACAGATC
Found at i:100952828 original size:28 final size:27
Alignment explanation
Indices: 100952728--100952828 Score: 71
Period size: 28 Copynumber: 3.4 Consensus size: 27
100952718 CAGAGTTAAC
* *
100952728 TGGGCCTTAGCCCATATCAATATTAATCA
1 TGGGCC-TAGCCCATATCAGTATCAAT-A
*
100952757 -GGGCCATAGCCCCT-TACAGTATCAGAGTATA
1 TGGGCC-TAGCCCATAT-CAGTATC--A--ATA
100952788 CTGGGCCTAGCCCATATCAGTATCAATA
1 -TGGGCCTAGCCCATATCAGTATCAATA
100952816 TGGGCCGTAGCCC
1 TGGGCC-TAGCCC
100952829 TATTACAAGT
Statistics
Matches: 58, Mismatches: 5, Indels: 19
0.71 0.06 0.23
Matches are distributed among these distances:
27 7 0.12
28 26 0.45
30 2 0.03
31 1 0.02
32 16 0.28
33 6 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (27 bp):
TGGGCCTAGCCCATATCAGTATCAATA
Found at i:100952835 original size:61 final size:63
Alignment explanation
Indices: 100952694--100952835 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 63
100952684 CAAGCTCTAC
*
100952694 TGGGCCTGAGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCA
1 TGGGCCT-AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCA
* * *
100952757 -GGGCCATAGCCC-CTTACAG-TATCAGAG-TATACTGGGCC-TAGCCCATATCAGTATCAAT-A
1 TGGGCC-TAGCCCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATCA
100952816 TGGGCCGTAGCCCTATTACA
1 TGGGCC-TAGCCCTATTACA
100952836 AGTCGAGATA
Statistics
Matches: 68, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
59 1 0.01
60 31 0.46
61 22 0.32
62 13 0.19
63 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (63 bp):
TGGGCCTAGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCA
Found at i:100952853 original size:60 final size:60
Alignment explanation
Indices: 100952716--100952864 Score: 157
Period size: 60 Copynumber: 2.5 Consensus size: 60
100952706 CTATTCAGAA
* *
100952716 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCAGGGCCATAGCCCCTTACAG
1 ATCAGAGTAT-ACTGGGCCTTAGCCCATATCAATATCAATCAGGGCCATAGCCCATTACAG
* *
100952776 TATCAGAGTATACTGGGCC-TAGCCCATATCAGTATCAAT-ATGGGCCGTAGCCCTATTACA-
1 -ATCAGAGTATACTGGGCCTTAGCCCATATCAATATCAATCA-GGGCCATAGCCC-ATTACAG
*
100952836 AGTC-GAGATATATTGGGCCTTA-CCCATAT
1 A-TCAGAG-TATACTGGGCCTTAGCCCATAT
100952865 TAACACAGTT
Statistics
Matches: 77, Mismatches: 5, Indels: 13
0.81 0.05 0.14
Matches are distributed among these distances:
59 5 0.06
60 48 0.62
61 23 0.30
62 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (60 bp):
ATCAGAGTATACTGGGCCTTAGCCCATATCAATATCAATCAGGGCCATAGCCCATTACAG
Found at i:100955881 original size:22 final size:21
Alignment explanation
Indices: 100955851--100955916 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
100955841 TACAAATTAA
100955851 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
100955873 ATCTTCAAGATTTCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
100955894 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
100955913 ATCT
1 ATCT
100955917 AAGATTGTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
19 18 0.45
21 10 0.25
22 12 0.30
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:100955903 original size:19 final size:19
Alignment explanation
Indices: 100955868--100955965 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
100955858 AGATTACAAG
*
100955868 ATCATATCTTCAAGATTTCAT
1 ATCATATC-T-AAGATTGCAT
100955889 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
100955908 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
100955925 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
100955944 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
100955963 ATC
1 ATC
100955966 CTTAAAGATT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:100955932 original size:36 final size:36
Alignment explanation
Indices: 100955888--100955959 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
100955878 CAAGATTTCA
100955888 TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
100955924 TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
100955960 CATATCCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:100956727 original size:3 final size:3
Alignment explanation
Indices: 100956719--100956759 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
100956709 AAACATATGA
*
100956719 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
100956760 CATCCAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:100958238 original size:16 final size:17
Alignment explanation
Indices: 100958217--100958250 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
100958207 ATATTATGTA
100958217 TACTATTA-TATTTTAT
1 TACTATTATTATTTTAT
100958233 TACTATTATTATTTTAT
1 TACTATTATTATTTTAT
100958250 T
1 T
100958251 TATTATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (17 bp):
TACTATTATTATTTTAT
Found at i:100958245 original size:22 final size:19
Alignment explanation
Indices: 100958220--100958262 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 19
100958210 TTATGTATAC
100958220 TATTATATTTTATTACTATTAT
1 TATTATA-TTTATTA-T-TTAT
*
100958242 TATTTTATTTATTATTTAT
1 TATTATATTTATTATTTAT
100958261 TA
1 TA
100958263 GCATTAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 6 0.30
20 1 0.05
21 7 0.35
22 6 0.30
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
TATTATATTTATTATTTAT
Found at i:100958869 original size:27 final size:25
Alignment explanation
Indices: 100958815--100958897 Score: 73
Period size: 25 Copynumber: 3.2 Consensus size: 25
100958805 TTTTTAATAC
100958815 TATATTTTAATACCATATATATTG--TG
1 TATATTTTAATA-C-TA-ATATTGTATG
100958841 TATATTCTTAATACTAAATATTGTATG
1 TATATT-TTAATACT-AATATTGTATG
* *
100958868 TATTTTTTAATAACT-ATATTATATG
1 TATATTTTAAT-ACTAATATTGTATG
100958893 TATAT
1 TATAT
100958898 ATATTATGTA
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
25 20 0.41
26 13 0.27
27 16 0.33
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (25 bp):
TATATTTTAATACTAATATTGTATG
Found at i:100958948 original size:20 final size:21
Alignment explanation
Indices: 100958894--100958949 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 21
100958884 TATTATATGT
*
100958894 ATATATATTATGTACATATTTTTC
1 ATATATATTATGT--AT-TTTTTA
100958918 ATAT-TATTATGTATTTTTTA
1 ATATATATTATGTATTTTTTA
100958938 ATATATA-TATGT
1 ATATATATTATGT
100958950 GTATATTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 14 0.47
21 4 0.13
23 8 0.27
24 4 0.13
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (21 bp):
ATATATATTATGTATTTTTTA
Found at i:100960618 original size:16 final size:17
Alignment explanation
Indices: 100960597--100960630 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
100960587 TTATATTATA
100960597 TATTATAA-AATTATTT
1 TATTATAAGAATTATTT
*
100960613 TATTATAAGTATTATTT
1 TATTATAAGAATTATTT
100960630 T
1 T
100960631 TAATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TATTATAAGAATTATTT
Found at i:100960628 original size:17 final size:16
Alignment explanation
Indices: 100960597--100960685 Score: 65
Period size: 17 Copynumber: 5.1 Consensus size: 16
100960587 TTATATTATA
*
100960597 TATTATAAAATTATTT
1 TATTATAATATTATTT
100960613 TATTATAAGTATTATTTT
1 TATTATAA-TATTA-TTT
100960631 TAATTAT-ATATTATTAT
1 T-ATTATAATATTATT-T
100960648 TACTTATTATATATTATTTT
1 TA-TTA-TA-ATATTA-TTT
*
100960668 TCTTA-AATTATTATTT
1 TATTATAA-TATTATTT
100960684 TA
1 TA
100960686 CATCTCTTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 20
0.72 0.04 0.24
Matches are distributed among these distances:
16 16 0.27
17 20 0.33
18 6 0.10
19 8 0.13
20 8 0.13
21 2 0.03
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (16 bp):
TATTATAATATTATTT
Found at i:100960647 original size:20 final size:20
Alignment explanation
Indices: 100960585--100960682 Score: 69
Period size: 20 Copynumber: 4.8 Consensus size: 20
100960575 CTAATTTTAA
*
100960585 TTTTATATTATATATTATAAAAT
1 TTTTA-ATTATATATTAT--TAT
* *
100960608 TATTTTATTATA-AGTATTAT
1 T-TTTAATTATATATTATTAT
100960628 TTTTAATTATATATTATTAT
1 TTTTAATTATATATTATTAT
*
100960648 TACTT-ATTATATATTATT-T
1 T-TTTAATTATATATTATTAT
100960667 TTCTTAAATTAT-TATT
1 TT-TT-AATTATATATT
100960683 TTACATCTCT
Statistics
Matches: 62, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
19 13 0.21
20 28 0.45
21 7 0.11
22 4 0.06
23 7 0.11
24 3 0.05
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (20 bp):
TTTTAATTATATATTATTAT
Found at i:100960681 original size:44 final size:42
Alignment explanation
Indices: 100960612--100960751 Score: 111
Period size: 40 Copynumber: 3.4 Consensus size: 42
100960602 TAAAATTATT
*
100960612 TTATTATA-AGTATTATTTTTAAT-TA-TATA-TTATTATTAC
1 TTATTATATATTATT-TTTTTAATATATTATATTTATTATTAC
*
100960651 TTATTATATATTATTTTTCTTAA-ATTATTAT-TTTA-CATCT-C
1 TTATTATATATTATTTTT-TTAATA-TATTATATTTATTAT-TAC
*
100960692 TT-TTATATATTATTATATTTTCATATATTATATTTATTAATTAC
1 TTATTATATATTATT-T-TTTTAATATATTATATTTATT-ATTAC
*
100960736 TTA-TATATATTGTTTT
1 TTATTATATATTATTTT
100960752 ATATGTTACT
Statistics
Matches: 81, Mismatches: 5, Indels: 27
0.72 0.04 0.24
Matches are distributed among these distances:
39 11 0.14
40 21 0.26
41 17 0.21
42 15 0.19
43 2 0.02
44 15 0.19
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.61
Consensus pattern (42 bp):
TTATTATATATTATTTTTTTAATATATTATATTTATTATTAC
Found at i:100960682 original size:3 final size:3
Alignment explanation
Indices: 100960606--100960665 Score: 50
Period size: 3 Copynumber: 19.0 Consensus size: 3
100960596 ATATTATAAA
* * *
100960606 ATT ATT -TT ATT ATA AGT ATT ATT TTT AATT ATAT ATT ATT ATT ACTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT AT-T ATT ATT ATT A-TT
100960653 ATT ATAT ATT ATT
1 ATT AT-T ATT ATT
100960666 TTTCTTAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
2 2 0.04
3 33 0.72
4 11 0.24
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:100962117 original size:20 final size:21
Alignment explanation
Indices: 100962092--100962132 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
100962082 TTTCGACAAC
100962092 GTATATA-TTTTTAATACTAT
1 GTATATACTTTTTAATACTAT
100962112 GTATATACTTTTTAATACTAT
1 GTATATACTTTTTAATACTAT
100962133 TATTATGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (21 bp):
GTATATACTTTTTAATACTAT
Found at i:100963366 original size:15 final size:14
Alignment explanation
Indices: 100963334--100963392 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 14
100963324 GGATGTGGAG
*
100963334 GTGGAGGTGGATGTT
1 GTGG-GGTGGAGGTT
*
100963349 GTGCGGGTTGAGGTT
1 GTG-GGGTGGAGGTT
100963364 GTGGAGGTGGAGGTT
1 GTGG-GGTGGAGGTT
100963379 GTGGGGGTGGAGGT
1 GT-GGGGTGGAGGT
100963393 GGATGAGGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
14 1 0.03
15 34 0.89
16 3 0.08
ACGTcount: A:0.10, C:0.02, G:0.59, T:0.29
Consensus pattern (14 bp):
GTGGGGTGGAGGTT
Found at i:100963368 original size:30 final size:30
Alignment explanation
Indices: 100963334--100963392 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
100963324 GGATGTGGAG
* *
100963334 GTGGAGGTGGATGTTGTGCGGGTTGAGGTT
1 GTGGAGGTGGAGGTTGTGCGGGTGGAGGTT
*
100963364 GTGGAGGTGGAGGTTGTGGGGGTGGAGGT
1 GTGGAGGTGGAGGTTGTGCGGGTGGAGGT
100963393 GGATGAGGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.10, C:0.02, G:0.59, T:0.29
Consensus pattern (30 bp):
GTGGAGGTGGAGGTTGTGCGGGTGGAGGTT
Found at i:100963378 original size:21 final size:21
Alignment explanation
Indices: 100963354--100963395 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
100963344 ATGTTGTGCG
**
100963354 GGTTGAGGTTGTGGAGGTGGA
1 GGTTGAGGGGGTGGAGGTGGA
*
100963375 GGTTGTGGGGGTGGAGGTGGA
1 GGTTGAGGGGGTGGAGGTGGA
100963396 TGAGGGTGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.62, T:0.26
Consensus pattern (21 bp):
GGTTGAGGGGGTGGAGGTGGA
Found at i:100964185 original size:24 final size:22
Alignment explanation
Indices: 100964150--100964194 Score: 72
Period size: 24 Copynumber: 2.0 Consensus size: 22
100964140 TATAAGTAAA
100964150 TATTATTTTATTATTAAAATAT
1 TATTATTTTATTATTAAAATAT
100964172 TATTATATTATATTATTAAAATA
1 TATTAT-TT-TATTATTAAAATA
100964195 AAATAAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.29
23 2 0.10
24 13 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TATTATTTTATTATTAAAATAT
Done.