Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 311 of 343
Found at i:100965031 original size:13 final size:13
Alignment explanation
Indices: 100965015--100965041 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
100965005 TGTATATTGA
100965015 TTGGAAATTGAAT
1 TTGGAAATTGAAT
100965028 TTGGAAATTGAAT
1 TTGGAAATTGAAT
100965041 T
1 T
100965042 ATGTATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (13 bp):
TTGGAAATTGAAT
Found at i:100966301 original size:6 final size:6
Alignment explanation
Indices: 100966290--100966359 Score: 68
Period size: 6 Copynumber: 10.7 Consensus size: 6
100966280 GCAGACGTTA
* *
100966290 TGGAGG TGGAGG TGGAGG TGGAGG TGGAGG TTGTGCGGG TGCAGGTTG
1 TGGAGG TGGAGG TGGAGG TGGAGG TGGAGG -TG-G-AGG TGGA-G--G
100966338 TGGAGG TGGAGG TGGAGG TGGA
1 TGGAGG TGGAGG TGGAGG TGGA
100966360 TAAGGGTATC
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
6 41 0.76
7 3 0.06
8 4 0.07
9 6 0.11
ACGTcount: A:0.14, C:0.03, G:0.61, T:0.21
Consensus pattern (6 bp):
TGGAGG
Found at i:100966345 original size:15 final size:15
Alignment explanation
Indices: 100966295--100966350 Score: 66
Period size: 15 Copynumber: 3.9 Consensus size: 15
100966285 CGTTATGGAG
100966295 GTGGAGGTGGA-G--
1 GTGGAGGTGGAGGTT
100966307 GTGGAGGTGGAGGTT
1 GTGGAGGTGGAGGTT
*
100966322 GTGCG-GGTGCAGGTT
1 GTG-GAGGTGGAGGTT
100966337 GTGGAGGTGGAGGT
1 GTGGAGGTGGAGGT
100966351 GGAGGTGGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
12 11 0.30
13 1 0.03
14 1 0.03
15 23 0.62
16 1 0.03
ACGTcount: A:0.12, C:0.04, G:0.61, T:0.23
Consensus pattern (15 bp):
GTGGAGGTGGAGGTT
Found at i:100967439 original size:17 final size:17
Alignment explanation
Indices: 100967407--100967438 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
100967397 TTTGATCTTT
100967407 TTGTTTCTTTTATTTTC
1 TTGTTTCTTTTATTTTC
100967424 TTGTTTCTTTT-TTTT
1 TTGTTTCTTTTATTTT
100967439 TATTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.03, C:0.09, G:0.06, T:0.81
Consensus pattern (17 bp):
TTGTTTCTTTTATTTTC
Found at i:100968287 original size:24 final size:24
Alignment explanation
Indices: 100968245--100968399 Score: 116
Period size: 24 Copynumber: 6.2 Consensus size: 24
100968235 GTTATATATT
*
100968245 TTTTAACTATTTTACATATTATTTA
1 TTTTAACT-TTTTATATATTATTTA
*
100968270 TTTTAAGTTTTTATATATATTATTTA
1 TTTTAA-CTTTT-TATATATTATTTA
* *
100968296 TTTTAAAC-TTTTACATATTATATA
1 TTTT-AACTTTTTATATATTATTTA
* * * * *
100968320 TTTTAAATTTATATACATGATGTA
1 TTTTAACTTTTTATATATTATTTA
* *
100968344 GTTTAAACTATTTTATATGTTATTTA
1 -TTTTAACT-TTTTATATATTATTTA
* *
100968370 TTTTAAACTTTTT-TATGTTAATTA
1 TTTT-AACTTTTTATATATTATTTA
100968394 TTTTAA
1 TTTTAA
100968400 ACTGTTTTGC
Statistics
Matches: 103, Mismatches: 20, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
23 4 0.04
24 40 0.39
25 25 0.24
26 32 0.31
27 2 0.02
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.59
Consensus pattern (24 bp):
TTTTAACTTTTTATATATTATTTA
Found at i:100968322 original size:50 final size:48
Alignment explanation
Indices: 100968254--100968402 Score: 140
Period size: 50 Copynumber: 3.0 Consensus size: 48
100968244 TTTTTAACTA
100968254 TTTTACATATTATTTATTTTAAGTTTTTATATATATTATTTATTTTAAAC
1 TTTTACATATTATTTATTTTAA--TTTTATATATATTATTTATTTTAAAC
* * * * * *
100968304 TTTTACATATTATATATTTTAAATTTATATACATGATGTAGTTTAAAC
1 TTTTACATATTATTTATTTTAATTTTATATATATTATTTATTTTAAAC
* * * *
100968352 TATTTTATATGTTATTTATTTTAAACTTTT-T-TATGTTAATTATTTTAAAC
1 --TTTTACATATTATTTATTTT-AA-TTTTATATATATTATTTATTTTAAAC
100968402 T
1 T
100968403 GTTTTGCATT
Statistics
Matches: 79, Mismatches: 16, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
48 22 0.28
50 51 0.65
51 3 0.04
52 3 0.04
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (48 bp):
TTTTACATATTATTTATTTTAATTTTATATATATTATTTATTTTAAAC
Found at i:100968396 original size:74 final size:74
Alignment explanation
Indices: 100968278--100968459 Score: 189
Period size: 74 Copynumber: 2.5 Consensus size: 74
100968268 TATTTTAAGT
* **
100968278 TTTTATATATATTATTTATTTTAAACTTTTACATATTATATATTTTAAA-T-TTATATACATGAT
1 TTTT-TATATGTTATTTATTTTAAACTTTTTTATATTATATATTTTAAACTGTT-T-TACATGAT
100968341 GTAGTTTAAACTA
63 GTAGTTTAAA-TA
* * * *
100968354 -TTTTATATGTTATTTATTTTAAACTTTTTTATGTTA-ATTATTTTAAACTGTTTTGCATTATTT
1 TTTTTATATGTTATTTATTTTAAACTTTTTTATATTATA-TATTTTAAACTGTTTTACATGATGT
100968417 AGTTTAAATA
65 AGTTTAAATA
*
100968427 TTTTTTTATGTTA-TT-TTTT-AACTATTTTTATAT
1 TTTTTATATGTTATTTATTTTAAACT-TTTTTATAT
100968460 GTGTTATCTA
Statistics
Matches: 92, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
71 4 0.04
72 12 0.13
73 5 0.05
74 64 0.70
75 5 0.05
76 2 0.02
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (74 bp):
TTTTTATATGTTATTTATTTTAAACTTTTTTATATTATATATTTTAAACTGTTTTACATGATGTA
GTTTAAATA
Found at i:100968407 original size:26 final size:25
Alignment explanation
Indices: 100968244--100968524 Score: 100
Period size: 24 Copynumber: 11.2 Consensus size: 25
100968234 CGTTATATAT
* * * *
100968244 TTTTTAACTATTTTACATATTATTTA
1 TTTTAAACT-TTTTATATGTTAATTA
** * *
100968270 TTTTAAGTTTTTATATATATTATTTA
1 TTTTAAACTTTT-TATATGTTAATTA
* *
100968296 TTTTAAAC-TTTTACATATT-ATATA
1 TTTTAAACTTTTTATATGTTAAT-TA
* ** *
100968320 TTTTAAA-TTTATATA-CATGATGTA
1 TTTTAAACTTTTTATATGTTAAT-TA
* *
100968344 GTTTAAACTATTTTATATGTTATTTA
1 TTTTAAACT-TTTTATATGTTAATTA
100968370 TTTTAAACTTTTT-TATGTTAATTA
1 TTTTAAACTTTTTATATGTTAATTA
** *
100968394 TTTTAAACTGTTTTGCA--TTATTTA
1 TTTTAAACT-TTTTATATGTTAATTA
* * *
100968418 GTTTAAATATTTTTTTATGTT-ATT-
1 TTTTAAA-CTTTTTATATGTTAATTA
*
100968442 TTTT-AACTATTTTTATATGTGTTATCTA
1 TTTTAAAC--TTTTTATATGT-TAAT-TA
* * *
100968470 TTTTAAA-TTTCTACATGTTATTTA
1 TTTTAAACTTTTTATATGTTAATTA
* * * *
100968494 -GTTATACGGTTTTATATGTTAACTA
1 TTTTAAAC-TTTTTATATGTTAATTA
100968519 TTTTAA
1 TTTTAA
100968525 CTTCTCTTTT
Statistics
Matches: 189, Mismatches: 44, Indels: 44
0.68 0.16 0.16
Matches are distributed among these distances:
23 8 0.04
24 82 0.43
25 33 0.17
26 57 0.30
27 3 0.02
28 4 0.02
29 2 0.01
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (25 bp):
TTTTAAACTTTTTATATGTTAATTA
Found at i:100968422 original size:24 final size:24
Alignment explanation
Indices: 100968217--100968424 Score: 95
Period size: 24 Copynumber: 8.5 Consensus size: 24
100968207 TCATTGACCT
*
100968217 TTTATTTTAAACTG-TTT-CGTTA
1 TTTATTTTAAACTGTTTTACATTA
* * *
100968239 TATATTTTTTAACTATTTTACATATTA
1 TTTA-TTTTAAACTGTTTTAC--ATTA
** * *
100968266 TTTATTTTAAGTTTTTATATATATTA
1 TTTATTTTAAACTGTT-T-TACATTA
100968292 TTTATTTTAAAC--TTTTACATATTA
1 TTTATTTTAAACTGTTTTAC--ATTA
* *
100968316 TATATTTTAAA-T-TTATATACATGA
1 TTTATTTTAAACTGTT-T-TACATTA
* * * *
100968340 TGTAGTTTAAACTATTTTATATGTTA
1 TTTATTTTAAACTGTTTTACA--TTA
* **
100968366 TTTATTTTAAACTTTTTTATGTTA
1 TTTATTTTAAACTGTTTTACATTA
* *
100968390 ATTATTTTAAACTGTTTTGCATTA
1 TTTATTTTAAACTGTTTTACATTA
*
100968414 TTTAGTTTAAA
1 TTTATTTTAAA
100968425 TATTTTTTTA
Statistics
Matches: 140, Mismatches: 30, Indels: 30
0.70 0.15 0.15
Matches are distributed among these distances:
22 5 0.04
23 9 0.06
24 67 0.48
25 4 0.03
26 46 0.33
27 7 0.05
28 2 0.01
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.58
Consensus pattern (24 bp):
TTTATTTTAAACTGTTTTACATTA
Found at i:100968705 original size:26 final size:26
Alignment explanation
Indices: 100968676--100968781 Score: 99
Period size: 26 Copynumber: 4.1 Consensus size: 26
100968666 CTTTTATATG
*
100968676 TTATTTTAAAGTGTCTTATACATTAT
1 TTATTTTAAATTGTCTTATACATTAT
* *
100968702 TTATTTTAAATT-ACTTAGTATATTAT
1 TTATTTTAAATTGTCTTA-TACATTAT
* * *
100968728 TTATTTTAATATTGTTTTACATATTAT
1 TTATTTTAA-ATTGTCTTATACATTAT
* * *
100968755 TT-TTCTGAATTGTTTTATACATTAT
1 TTATTTTAAATTGTCTTATACATTAT
100968780 TT
1 TT
100968782 TGTTTCGTTT
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
25 21 0.31
26 31 0.46
27 12 0.18
28 3 0.04
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (26 bp):
TTATTTTAAATTGTCTTATACATTAT
Found at i:100969904 original size:32 final size:32
Alignment explanation
Indices: 100969838--100969904 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
100969828 TTATAAATTA
**
100969838 GGATTTTTATGCAAAATCAAGTTTTTATTGAT
1 GGATTTTTATGCAAAATCAAGTTTTTATCAAT
* *
100969870 GGATTTTTATGCAAGATTAAGTTTTTATCAAT
1 GGATTTTTATGCAAAATCAAGTTTTTATCAAT
100969902 GGA
1 GGA
100969905 ATGATTTTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.06, G:0.18, T:0.45
Consensus pattern (32 bp):
GGATTTTTATGCAAAATCAAGTTTTTATCAAT
Found at i:100970565 original size:21 final size:21
Alignment explanation
Indices: 100970539--100970583 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
100970529 TCATAATTTA
*
100970539 TTTTTCTATTTCACTTTT-TTC
1 TTTTTCCATTTC-CTTTTATTC
*
100970560 TTTTTCCCTTTCCTTTTATTC
1 TTTTTCCATTTCCTTTTATTC
100970581 TTT
1 TTT
100970584 CCCTTTCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.07, C:0.22, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTTCCATTTCCTTTTATTC
Found at i:100971241 original size:30 final size:32
Alignment explanation
Indices: 100971190--100971253 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 32
100971180 TTATAGATTG
*
100971190 ATGGATTTTTGTTTGTTATGTTAATTTT-TTA
1 ATGGATTTTTGTTTGTGATGTTAATTTTCTTA
*
100971221 ATGGATTTTT-TTTGTGATGTTAGTTTTCTTA
1 ATGGATTTTTGTTTGTGATGTTAATTTTCTTA
100971252 AT
1 AT
100971254 TTTTTAATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 15 0.50
31 15 0.50
ACGTcount: A:0.19, C:0.02, G:0.17, T:0.62
Consensus pattern (32 bp):
ATGGATTTTTGTTTGTGATGTTAATTTTCTTA
Found at i:100971857 original size:30 final size:31
Alignment explanation
Indices: 100971793--100971860 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
100971783 AGTTCGGTTG
* * *
100971793 CCAATCTGGGACAAAAAAAACATATTGAGTA
1 CCAATCTGGGACAAAAAAAACACATTAAGCA
*
100971824 CCAATCTGGGACAAAAAAAA-ACCTTAAGCA
1 CCAATCTGGGACAAAAAAAACACATTAAGCA
100971854 CCAATCT
1 CCAATCT
100971861 AGGAGAAGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
30 13 0.39
31 20 0.61
ACGTcount: A:0.47, C:0.22, G:0.13, T:0.18
Consensus pattern (31 bp):
CCAATCTGGGACAAAAAAAACACATTAAGCA
Found at i:100972119 original size:38 final size:38
Alignment explanation
Indices: 100972058--100972132 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
100972048 ATTTTTTGGA
* *
100972058 AGATTAAAACCTTTTGGGTAATCTCCAACAATGGATTT
1 AGATTAAAACCTTCTGGGCAATCTCCAACAATGGATTT
100972096 AGATTAAAACCTTCTGGGCAATCTCCAACAATGGATT
1 AGATTAAAACCTTCTGGGCAATCTCCAACAATGGATT
100972133 CTAGTATGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31
Consensus pattern (38 bp):
AGATTAAAACCTTCTGGGCAATCTCCAACAATGGATTT
Found at i:100975255 original size:27 final size:27
Alignment explanation
Indices: 100975225--100975338 Score: 144
Period size: 27 Copynumber: 4.2 Consensus size: 27
100975215 GTGACGAAGT
*
100975225 CACCAGATACAGAT-ATTGTGGCAGACC
1 CACCAGAT-CAGATAATTGTGGCAGAGC
*
100975252 CACCAGATCAGATAATTGTGGCATAGC
1 CACCAGATCAGATAATTGTGGCAGAGC
100975279 CACCAGGA-CAGAT-ATATGTGGCAGAGC
1 CACCA-GATCAGATAAT-TGTGGCAGAGC
* *
100975306 CACCAAATCAGATAATTGTGGCATAGC
1 CACCAGATCAGATAATTGTGGCAGAGC
100975333 CACCAG
1 CACCAG
100975339 GATGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
26 8 0.11
27 64 0.84
28 4 0.05
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (27 bp):
CACCAGATCAGATAATTGTGGCAGAGC
Found at i:100975299 original size:54 final size:53
Alignment explanation
Indices: 100975233--100975340 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 53
100975223 GTCACCAGAT
*
100975233 ACAGATATTGTGGCAGACCCACCAGATCAGATAATTGTGGCATAGCCACCAGG
1 ACAGATATTGTGGCAGACCCACCAAATCAGATAATTGTGGCATAGCCACCAGG
*
100975286 ACAGATATATGTGGCAGAGCCACCAAATCAGATAATTGTGGCATAGCCACCAGG
1 ACAGATAT-TGTGGCAGACCCACCAAATCAGATAATTGTGGCATAGCCACCAGG
100975340 A
1 A
100975341 TGCTTCCTCC
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
53 8 0.15
54 44 0.85
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (53 bp):
ACAGATATTGTGGCAGACCCACCAAATCAGATAATTGTGGCATAGCCACCAGG
Found at i:100976962 original size:26 final size:26
Alignment explanation
Indices: 100976932--100977013 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
100976922 TGAAATGCCC
*
100976932 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
*
100976958 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAATATTTACCTAACCCATT
100976984 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
100977010 ATCA
1 ATCA
100977014 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAATATTTACCTAACCCATT
Found at i:100986265 original size:20 final size:20
Alignment explanation
Indices: 100986240--100986291 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
100986230 TCAGTATTTC
100986240 TAATTTCTTAAAG-TTCTTAA
1 TAATTT-TTAAAGATTCTTAA
*
100986260 TAATTTTTAAAGATTCTTCTA
1 TAATTTTTAAAGATTCTT-AA
100986281 TAATTATTTAA
1 TAATT-TTTAA
100986292 TAATTATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 6 0.21
20 11 0.39
21 6 0.21
22 5 0.18
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.52
Consensus pattern (20 bp):
TAATTTTTAAAGATTCTTAA
Found at i:100988727 original size:23 final size:22
Alignment explanation
Indices: 100988700--100988818 Score: 84
Period size: 23 Copynumber: 5.2 Consensus size: 22
100988690 TTTTAAATAT
100988700 TATATTTCACATATATTATTATA
1 TATATTTCA-ATATATTATTATA
*
100988723 TATATTTTAATATTATTAGTTATA
1 TATATTTCAATA-TATTA-TTATA
** *
100988747 T-T-TTTCTTTTATACTATTATA
1 TATATTTC-AATATATTATTATA
* *
100988768 TATATTTCTA-ATATTA-TATTG
1 TATATTTCAATATATTATTA-TA
100988789 TATATTTCTAATACTATTATTTATA
1 TATATTTC-AATA-TATTA-TTATA
100988814 TATAT
1 TATAT
100988819 GTGTGTGTAT
Statistics
Matches: 75, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
20 2 0.03
21 20 0.27
22 13 0.17
23 21 0.28
24 11 0.15
25 6 0.08
26 2 0.03
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (22 bp):
TATATTTCAATATATTATTATA
Found at i:100988794 original size:21 final size:21
Alignment explanation
Indices: 100988699--100988814 Score: 85
Period size: 21 Copynumber: 5.3 Consensus size: 21
100988689 GTTTTAAATA
100988699 TTATATTTC-ACATA-TATTAT
1 TTATATTTCTA-ATACTATTAT
* *
100988719 TATATATATTTTAATATTATTAGT
1 T-TATAT-TTCTAATACTATTA-T
* *
100988743 TATATTTTTCTTTTATACTATTAT
1 T-TATATTTC--TAATACTATTAT
* *
100988767 ATATATTTCTAATATTA-TAT
1 TTATATTTCTAATACTATTAT
100988787 TGTATATTTCTAATACTATTAT
1 T-TATATTTCTAATACTATTAT
100988809 TTATAT
1 TTATAT
100988815 ATATGTGTGT
Statistics
Matches: 76, Mismatches: 11, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
20 4 0.05
21 31 0.41
22 9 0.12
23 15 0.20
24 8 0.11
25 9 0.12
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.59
Consensus pattern (21 bp):
TTATATTTCTAATACTATTAT
Found at i:101001526 original size:71 final size:71
Alignment explanation
Indices: 101001392--101001530 Score: 215
Period size: 71 Copynumber: 2.0 Consensus size: 71
101001382 AATTTTTACT
* * *
101001392 TTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAA
101001457 TTTATG
66 TTTATG
** * *
101001463 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGATATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAA
101001528 TTT
66 TTT
101001531 CTACTTTCCA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (71 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAA
TTTATG
Found at i:101001694 original size:54 final size:55
Alignment explanation
Indices: 101001546--101001756 Score: 320
Period size: 54 Copynumber: 3.8 Consensus size: 55
101001536 TTCCAATTCC
* *
101001546 TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTA
1 TGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
*
101001602 TATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
1 TGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
*
101001658 TGTTTTTC-AAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CCTTTTAATTTT
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTTTTAATTTT
* *
101001712 TGTTTTTC-AAAAATCAACCCATATTGCGAGAAGTGAGTTGAGCCT
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
101001757 CGGGTCATAT
Statistics
Matches: 145, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
53 1 0.01
54 83 0.57
55 1 0.01
56 60 0.41
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (55 bp):
TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
Found at i:101002612 original size:14 final size:15
Alignment explanation
Indices: 101002593--101002621 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
101002583 AAACCCCTTA
101002593 CAAACCC-AAAACCC
1 CAAACCCTAAAACCC
101002607 CAAACCCTAAAACCC
1 CAAACCCTAAAACCC
101002622 TAATTAGCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.48, C:0.48, G:0.00, T:0.03
Consensus pattern (15 bp):
CAAACCCTAAAACCC
Found at i:101004082 original size:23 final size:22
Alignment explanation
Indices: 101004055--101004173 Score: 84
Period size: 23 Copynumber: 5.2 Consensus size: 22
101004045 TTTTTAATAT
101004055 TATATTTCACATATATTATTATA
1 TATATTTCA-ATATATTATTATA
*
101004078 TATATTTTAATATTATTAGTTATA
1 TATATTTCAATA-TATTA-TTATA
** *
101004102 T-T-TTTCTTTTATACTATTATA
1 TATATTTC-AATATATTATTATA
* *
101004123 TATATTTCTA-ATATTA-TATTG
1 TATATTTCAATATATTATTA-TA
101004144 TATATTTCTAATACTATTATTTATA
1 TATATTTC-AATA-TATTA-TTATA
101004169 TATAT
1 TATAT
101004174 ATATGTGTGT
Statistics
Matches: 75, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
20 2 0.03
21 20 0.27
22 13 0.17
23 21 0.28
24 11 0.15
25 6 0.08
26 2 0.03
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (22 bp):
TATATTTCAATATATTATTATA
Found at i:101004149 original size:21 final size:21
Alignment explanation
Indices: 101004054--101004169 Score: 85
Period size: 21 Copynumber: 5.3 Consensus size: 21
101004044 GTTTTTAATA
101004054 TTATATTTC-ACATA-TATTAT
1 TTATATTTCTA-ATACTATTAT
* *
101004074 TATATATATTTTAATATTATTAGT
1 T-TATAT-TTCTAATACTATTA-T
* *
101004098 TATATTTTTCTTTTATACTATTAT
1 T-TATATTTC--TAATACTATTAT
* *
101004122 ATATATTTCTAATATTA-TAT
1 TTATATTTCTAATACTATTAT
101004142 TGTATATTTCTAATACTATTAT
1 T-TATATTTCTAATACTATTAT
101004164 TTATAT
1 TTATAT
101004170 ATATATATGT
Statistics
Matches: 76, Mismatches: 11, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
20 4 0.05
21 31 0.41
22 9 0.12
23 15 0.20
24 8 0.11
25 9 0.12
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.59
Consensus pattern (21 bp):
TTATATTTCTAATACTATTAT
Found at i:101005769 original size:3 final size:3
Alignment explanation
Indices: 101005752--101005811 Score: 52
Period size: 3 Copynumber: 20.7 Consensus size: 3
101005742 ATTTAGGGTT
* * * * * *
101005752 AAG AAG -AG AAA AAG AAG AAA AAA AAG GAG GAG AAG -AG GAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
101005798 AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AA
101005812 CGAGGAGAAG
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
2 4 0.08
3 44 0.92
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:101005799 original size:32 final size:35
Alignment explanation
Indices: 101005752--101005823 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 35
101005742 ATTTAGGGTT
* *
101005752 AAGAAGAGAAAAAGAAGAA-AA-AA-AAGGAGGAG
1 AAGAGGAGAAAAAGAAGAAGAAGAAGAACGAGGAG
*
101005784 AAGAGGAGAAGAAGAAGAAGAAGAAGAACGAGGAG
1 AAGAGGAGAAAAAGAAGAAGAAGAAGAACGAGGAG
101005819 AAGAG
1 AAGAG
101005824 AAAATGGAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
32 17 0.50
33 2 0.06
34 2 0.06
35 13 0.38
ACGTcount: A:0.62, C:0.01, G:0.36, T:0.00
Consensus pattern (35 bp):
AAGAGGAGAAAAAGAAGAAGAAGAAGAACGAGGAG
Found at i:101015552 original size:50 final size:48
Alignment explanation
Indices: 101015498--101015743 Score: 128
Period size: 50 Copynumber: 5.2 Consensus size: 48
101015488 TACTCCACTA
*
101015498 CAACTTCAAGGAGATAAGATTCGCTATAGTAGAATCAATTTGACCCATTG
1 CAACTTCAAGGAGATAAGATT-GCTAT-GTAGAATCAATCTGACCCATTG
* ** *
101015548 CAACTTC-AGGGGTATAAGA-T--T-TGTAGTTTCAATCTG-CTCCACTG
1 CAACTTCAAGGAG-ATAAGATTGCTATGTAGAATCAATCTGAC-CCATTG
* * * *
101015592 CAACTT-TAGTGAGATAAGATTCGCTATGGTA-AATTTAATCCGACCCATTA
1 CAACTTCAAG-GAGATAAGATT-GCTAT-GTAGAA-TCAATCTGACCCATTG
* ** * *
101015642 CAACTTCAGAGG-TATAAGA-T--T-TGTAGCTTCAATTTG-CTCCACTG
1 CAACTTCA-AGGAGATAAGATTGCTATGTAGAATCAATCTGAC-CCATTG
101015686 CAACTTC-AGAGAGATAAGATTTGCTATGGTA-AATTCAATCTGACCCATTG
1 CAACTTCAAG-GAGATAAGA-TTGCTAT-GTAGAA-TCAATCTGACCCATTG
101015736 CAACTTCA
1 CAACTTCA
101015744 GGGGTATAGG
Statistics
Matches: 143, Mismatches: 26, Indels: 53
0.64 0.12 0.24
Matches are distributed among these distances:
42 2 0.01
43 3 0.02
44 55 0.38
45 5 0.03
46 3 0.02
48 2 0.01
49 8 0.06
50 60 0.42
51 3 0.02
52 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (48 bp):
CAACTTCAAGGAGATAAGATTGCTATGTAGAATCAATCTGACCCATTG
Found at i:101015929 original size:94 final size:93
Alignment explanation
Indices: 101015455--101015918 Score: 608
Period size: 94 Copynumber: 4.9 Consensus size: 93
101015445 AATCTACTGT
* *
101015455 AACTTCAG-GAGTATAAGATTTGCAGCTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATT
1 AACTTCAGAG-GTATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTC-AGGAGATAAGATT
* * *
101015519 CGCTATAGTAGAATCAATTTGACCCATTGC
64 CGCTATGGTAGATTCAATTCGACCCATTGC
* * * *
101015549 AACTTCAGGGGTATAAGATTTGTAGTTTCAATCTGCTCCACTGCAACTTTAGTGAGATAAGATTC
1 AACTTCAGAGGTATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTCAG-GAGATAAGATTC
* * * *
101015614 GCTATGGTAAATTTAATCCGACCCATTAC
65 GCTATGGTAGATTCAATTCGACCCATTGC
* * *
101015643 AACTTCAGAGGTATAAGATTTGTAGCTTCAATTTGCTCCACTGCAACTTCAGAGAGATAAGATTT
1 AACTTCAGAGGTATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTCAG-GAGATAAGATTC
*
101015708 GCTATGGTAAATTCAA-TCTGACCCATTGC
65 GCTATGGTAGATTCAATTC-GACCCATTGC
* * * *
101015737 AACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGTTCCACTACAATTTCAGGAAGATAAGATTC
1 AACTTCAGAGGTATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGG-AGATAAGATTC
* * * *
101015802 GCTATGGTAGATTCAATCCAACCTACTGC
65 GCTATGGTAGATTCAATTCGACCCATTGC
* *
101015831 AACTTCAGAGGTATAAGATTTGTAGGTTCAATCTGCTCCACTATAACTTCAGTGAGATAAGATTC
1 AACTTCAGAGGTATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTCAG-GAGATAAGATTC
101015896 GCTATGGTAGATTCAATTCGACC
65 GCTATGGTAGATTCAATTCGACC
101015919 AACTAAAACT
Statistics
Matches: 323, Mismatches: 41, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
93 4 0.01
94 316 0.98
95 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (93 bp):
AACTTCAGAGGTATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGAGATAAGATTCG
CTATGGTAGATTCAATTCGACCCATTGC
Found at i:101019513 original size:7 final size:7
Alignment explanation
Indices: 101019499--101019572 Score: 112
Period size: 7 Copynumber: 10.6 Consensus size: 7
101019489 ATATTTGAGG
101019499 ATTGAAA
1 ATTGAAA
*
101019506 ATTTAAA
1 ATTGAAA
101019513 ATTGAAA
1 ATTGAAA
*
101019520 TTTGAAA
1 ATTGAAA
* *
101019527 TTTGAAG
1 ATTGAAA
101019534 ATTGAAA
1 ATTGAAA
101019541 ATTGAAA
1 ATTGAAA
101019548 ATTGAAA
1 ATTGAAA
101019555 ATTGAAA
1 ATTGAAA
101019562 ATTGAAA
1 ATTGAAA
101019569 ATTG
1 ATTG
101019573 GGGATTGAAG
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 61 1.00
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.34
Consensus pattern (7 bp):
ATTGAAA
Found at i:101019579 original size:21 final size:21
Alignment explanation
Indices: 101019499--101019607 Score: 105
Period size: 21 Copynumber: 5.1 Consensus size: 21
101019489 ATATTTGAGG
* *
101019499 ATTGAAAATTTAAAATTGAAA
1 ATTGAAAATTGAAGATTGAAA
* *
101019520 TTTGAAATTTGAAGATTGAAA
1 ATTGAAAATTGAAGATTGAAA
*
101019541 ATTGAAAATTGAAAATTGAAA
1 ATTGAAAATTGAAGATTGAAA
**
101019562 ATTGAAAATTGGGGATTGAAGA
1 ATTGAAAATTGAAGATTGAA-A
*
101019584 A-TGAAGAA-TGAAAGATTGAGA
1 ATTGAA-AATTG-AAGATTGAAA
101019605 ATT
1 ATT
101019608 TAAGAAGAAA
Statistics
Matches: 71, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
21 60 0.85
22 11 0.15
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (21 bp):
ATTGAAAATTGAAGATTGAAA
Found at i:101021094 original size:14 final size:15
Alignment explanation
Indices: 101021077--101021105 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
101021067 TAATTAGTAA
101021077 TTAATAATA-TAAAT
1 TTAATAATATTAAAT
101021091 TTAATAATATTAAAT
1 TTAATAATATTAAAT
101021106 ATAAGTCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAATAATATTAAAT
Found at i:101026504 original size:27 final size:27
Alignment explanation
Indices: 101026442--101026508 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 27
101026432 CCTCCTGAGT
* *
101026442 AGGCACAACATGTCGCGCCTACCTGAC
1 AGGCGCAACATGTCGCGCCTACCAGAC
* * **
101026469 AGGCTCAACATGTCGCGCCTATCAGGT
1 AGGCGCAACATGTCGCGCCTACCAGAC
*
101026496 AGGGGCAACATGT
1 AGGCGCAACATGT
101026509 GGTGCCTCCT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (27 bp):
AGGCGCAACATGTCGCGCCTACCAGAC
Found at i:101026624 original size:21 final size:20
Alignment explanation
Indices: 101026598--101026650 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
101026588 AAAAATTAGC
101026598 AGAAGGAA-AAAGAGAGAAAGA
1 AGAAGGAAGAAAG-GA-AAAGA
101026619 AGAAGGGAAGAAAGGAAAAGA
1 AGAA-GGAAGAAAGGAAAAGA
101026640 AGAA-GAAGAAA
1 AGAAGGAAGAAA
101026651 AATAATGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 7 0.23
21 13 0.43
22 6 0.20
23 4 0.13
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (20 bp):
AGAAGGAAGAAAGGAAAAGA
Found at i:101031850 original size:76 final size:78
Alignment explanation
Indices: 101031758--101031918 Score: 236
Period size: 76 Copynumber: 2.1 Consensus size: 78
101031748 ACAGGCTATA
* * *
101031758 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCAGGC-TAAA-T
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATATCCAAGCTTAAAGT
101031821 CCCGCAAGCTTCG
66 CCCGCAAGCTTCG
* *
101031834 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTATATCTAAGCTTAAAGT
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATATCCAAGCTTAAAGT
* * *
101031899 CCCGCAGGTTTTG
66 CCCGCAAGCTTCG
101031912 TGCTGGT
1 TGCTGGT
101031919 GATTGGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
76 53 0.71
77 4 0.05
78 18 0.24
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.32
Consensus pattern (78 bp):
TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATATCCAAGCTTAAAGT
CCCGCAAGCTTCG
Found at i:101031915 original size:40 final size:38
Alignment explanation
Indices: 101031758--101031918 Score: 189
Period size: 38 Copynumber: 4.2 Consensus size: 38
101031748 ACAGGCTATA
* * *
101031758 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTATTATATCAGGCTTAAATCCCGCAGGCTTCG
* *
101031796 TGCTGGTAATATATCCAGGC-TAAATCCCGCAAGCTTCG
1 TGCTGGTATTATAT-CAGGCTTAAATCCCGCAGGCTTCG
* * *
101031834 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAG
1 TGCTGGTATTATATCAGGCTTAAATCCCGCAGGCTTCG
* * *
101031872 TGCTGGTATTATATCTAAGCTTAAAGTCCCGCAGGTTTTG
1 TGCTGGTATTATATC-AGGCTTAAA-TCCCGCAGGCTTCG
101031912 TGCTGGT
1 TGCTGGT
101031919 GATTGGATTC
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
37 3 0.03
38 73 0.70
39 9 0.09
40 19 0.18
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.32
Consensus pattern (38 bp):
TGCTGGTATTATATCAGGCTTAAATCCCGCAGGCTTCG
Found at i:101033417 original size:33 final size:33
Alignment explanation
Indices: 101033229--101033460 Score: 202
Period size: 33 Copynumber: 7.0 Consensus size: 33
101033219 AACGACGGTA
* * *
101033229 GATACGACTCTGG-AGGAGTAGAGTATGGTGATG
1 GATACGA-GCTGGAAGGAGCAGAGTATGGTGGTG
* * * * * *
101033262 GATACAAGCCGGGAGGAGTAGAGAAT-GTCGATG
1 GATACGAGCTGGAAGGAGCAGAGTATGGT-GGTG
** *
101033295 GATACGAGCCAGAAGGAGC-GAAGTACGGTGGTG
1 GATACGAGCTGGAAGGAGCAG-AGTATGGTGGTG
* * * *
101033328 GATATGAGCTAGAAGGAGCGGAGTACGGTGGTG
1 GATACGAGCTGGAAGGAGCAGAGTATGGTGGTG
*
101033361 GATACGAGCTAGAAGGAGCAGAGTATGGTGGTG
1 GATACGAGCTGGAAGGAGCAGAGTATGGTGGTG
*
101033394 GATACGAGCTGGAAGGAGCAGAGTACT-GTAGTG
1 GATACGAGCTGGAAGGAGCAGAGTA-TGGTGGTG
* * * *
101033427 GATACGAGCCGGAAGGAGCGGAGTACGATGGTG
1 GATACGAGCTGGAAGGAGCAGAGTATGGTGGTG
101033460 G
1 G
101033461 GCTGAAGATA
Statistics
Matches: 169, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
32 6 0.04
33 159 0.94
34 4 0.02
ACGTcount: A:0.29, C:0.12, G:0.42, T:0.17
Consensus pattern (33 bp):
GATACGAGCTGGAAGGAGCAGAGTATGGTGGTG
Found at i:101036900 original size:22 final size:21
Alignment explanation
Indices: 101036872--101036934 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
101036862 TCTGTTGGGA
*
101036872 TTAGGTTTTTTAGGGTTAGGG
1 TTAGGGTTTTTAGGGTTAGGG
*
101036893 TTAGGGTTTTTA----T-GGT
1 TTAGGGTTTTTAGGGTTAGGG
101036909 TTAGGGTTTTTAGGGTTAGGG
1 TTAGGGTTTTTAGGGTTAGGG
101036930 TTAGG
1 TTAGG
101036935 ATGGGTTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
16 14 0.41
17 1 0.03
20 1 0.03
21 18 0.53
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48
Consensus pattern (21 bp):
TTAGGGTTTTTAGGGTTAGGG
Found at i:101036912 original size:16 final size:16
Alignment explanation
Indices: 101036890--101036963 Score: 87
Period size: 16 Copynumber: 4.7 Consensus size: 16
101036880 TTTAGGGTTA
101036890 GGGTTAGGGTTTTTAT
1 GGGTTAGGGTTTTTAT
*
101036906 GGTTTAGGGTTTTTA-
1 GGGTTAGGGTTTTTAT
***
101036921 GGGTTAGGGTTAGGAT
1 GGGTTAGGGTTTTTAT
*
101036937 GGGTTAAGGTTTTTAT
1 GGGTTAGGGTTTTTAT
*
101036953 GGTTTAGGGTT
1 GGGTTAGGGTT
101036964 AGGGTTTTTA
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
15 11 0.24
16 35 0.76
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.46
Consensus pattern (16 bp):
GGGTTAGGGTTTTTAT
Found at i:101036963 original size:32 final size:31
Alignment explanation
Indices: 101036887--101036966 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 31
101036877 TTTTTTAGGG
*** * *
101036887 TTAGGGTTAGGGTTTTTATGGTTTAGGGTTT
1 TTAGGGTTAGGGTTAGGATGGGTTAAGGTTT
101036918 TTAGGGTTAGGGTTAGGATGGGTTAAGGTTT
1 TTAGGGTTAGGGTTAGGATGGGTTAAGGTTT
*
101036949 TTATGGTTTAGGGTTAGG
1 TTA-GGGTTAGGGTTAGG
101036967 GTTTTTAGGG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 29 0.69
32 13 0.31
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (31 bp):
TTAGGGTTAGGGTTAGGATGGGTTAAGGTTT
Found at i:101036971 original size:22 final size:22
Alignment explanation
Indices: 101036878--101036985 Score: 87
Period size: 22 Copynumber: 4.8 Consensus size: 22
101036868 GGGATTAGGT
*
101036878 TTTTTAGGG-TTAGGGTTAGGG
1 TTTTTAGGGTTTAGGGTTAAGG
* *
101036899 TTTTTATGGTTTAGGGTTTTTAGG
1 TTTTTAGGGTTTAGGG--TTAAGG
* *
101036923 --GTTAGGGTTAGGATGGGTTAAGG
1 TTTTTAGGGTT--TA-GGGTTAAGG
* *
101036946 TTTTTATGGTTTAGGGTTAGGG
1 TTTTTAGGGTTTAGGGTTAAGG
101036968 TTTTTAGGGTTTAGGGTT
1 TTTTTAGGGTTTAGGGTT
101036986 TTTGTAAGGG
Statistics
Matches: 67, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
21 8 0.12
22 38 0.57
23 6 0.09
24 5 0.07
25 10 0.15
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.47
Consensus pattern (22 bp):
TTTTTAGGGTTTAGGGTTAAGG
Found at i:101036981 original size:16 final size:15
Alignment explanation
Indices: 101036887--101036988 Score: 76
Period size: 16 Copynumber: 7.1 Consensus size: 15
101036877 TTTTTTAGGG
101036887 TTAGGGTTAGGGTTT
1 TTAGGGTTAGGGTTT
*
101036902 TTATGGTTTAGGGTTT
1 TTA-GGGTTAGGGTTT
*
101036918 TTAGGGTTAGGGTTA
1 TTAGGGTTAGGGTTT
** *
101036933 GGATGGGTTAAGGTTT
1 TTA-GGGTTAGGGTTT
101036949 TTA----T--GG--T
1 TTAGGGTTAGGGTTT
101036956 TTAGGGTTAGGGTTT
1 TTAGGGTTAGGGTTT
101036971 TTAGGGTTTAGGGTTT
1 TTAGGG-TTAGGGTTT
101036987 TT
1 TT
101036989 GTAAGGGTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 21
0.69 0.09 0.22
Matches are distributed among these distances:
7 4 0.06
9 2 0.03
11 2 0.03
13 2 0.03
15 21 0.31
16 36 0.54
ACGTcount: A:0.15, C:0.00, G:0.37, T:0.48
Consensus pattern (15 bp):
TTAGGGTTAGGGTTT
Found at i:101037031 original size:26 final size:26
Alignment explanation
Indices: 101037001--101037064 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
101036991 AAGGGTTTAG
101037001 TTAATTAAATTAGGGCGTAAGATTAA
1 TTAATTAAATTAGGGCGTAAGATTAA
*
101037027 TTAATTAAATTAGGGTGTAAGATTAA
1 TTAATTAAATTAGGGCGTAAGATTAA
101037053 TTAATTAAATTA
1 TTAATTAAATTA
101037065 AATATTAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.39
Consensus pattern (26 bp):
TTAATTAAATTAGGGCGTAAGATTAA
Found at i:101037343 original size:126 final size:124
Alignment explanation
Indices: 101037193--101037581 Score: 431
Period size: 126 Copynumber: 3.1 Consensus size: 124
101037183 TTTTTGGTTT
* * * * * *
101037193 TTTTTCTTCAGTAGTATCTGGAAAAAAAATTTTAAGAAAAGTTTCTGAAGAAATAGTATCCAAAA
1 TTTTTCTACAGTGGTATCT-GAAAAAAAATTTTGAGAAAAGTTTCTGAAAAAATAGTGTCAAAAA
* * * * *
101037258 CGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAATGCTCCTATGTGGACGTTT
65 CGCTTCAAGCAGTATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
* * *
101037318 TTTTTCTACAGTGGTATCT-AAGAAAATAATTTTGAGAAAACGTTTTTGAAAAAATAATGTAAAA
1 TTTTTCTACAGTGGTATCTGAA-AAAA-AATTTTGAGAAAA-GTTTCTGAAAAAATAGTGTCAAA
* * *
101037382 AACGCTTTAAGCAATATGCACTGTCAGCAAAAGTACTGAAAAAAGCT-CTCACGTGGACGCTC
63 AACGCTTCAAGCAGTATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCT-ACGTGGACGCTC
** * * ** *
101037444 TTTTGATACAGTGGTATCTGAAAAAATAATTGTGAGATGACCTTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTGGTATCTGAAAAAA-AATTTTGAGA-AAAGTTTCTGAAAAAATAGTGTCAAAA
* * * * * *
101037509 ACACTTCATGCAGTTTGCACTTTAAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
64 ACGCTTCAAGCAGTATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
101037570 TTTTTCTACAGT
1 TTTTTCTACAGT
101037582 AGTTCCTATT
Statistics
Matches: 219, Mismatches: 38, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
123 2 0.01
124 4 0.02
125 31 0.14
126 178 0.81
127 4 0.02
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (124 bp):
TTTTTCTACAGTGGTATCTGAAAAAAAATTTTGAGAAAAGTTTCTGAAAAAATAGTGTCAAAAAC
GCTTCAAGCAGTATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
Found at i:101040716 original size:27 final size:27
Alignment explanation
Indices: 101040676--101040774 Score: 87
Period size: 27 Copynumber: 3.6 Consensus size: 27
101040666 CTTTTATTCT
101040676 ATTACAAATATAAAAGAGTAAATTATA
1 ATTACAAATATAAAAGAGTAAATTATA
** * *
101040703 ATTA-AAATACTAAAA-AACAACTTTTATTTT
1 ATTACAAATA-TAAAAGAGTAA--ATTA--TA
101040733 ATTACAAATATAAAAGAGTAAATTATA
1 ATTACAAATATAAAAGAGTAAATTATA
101040760 ATTA-AAATATTAAAA
1 ATTACAAATA-TAAAA
101040775 ACAAATTTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
26 13 0.23
27 19 0.34
28 3 0.05
29 3 0.05
30 10 0.18
31 8 0.14
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (27 bp):
ATTACAAATATAAAAGAGTAAATTATA
Found at i:101040728 original size:57 final size:56
Alignment explanation
Indices: 101040659--101040792 Score: 232
Period size: 57 Copynumber: 2.4 Consensus size: 56
101040649 TTCCTTATTC
*
101040659 AAAACAACTTTTATTCTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTAA
1 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATA-TAA
*
101040716 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATATTA
1 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATATAA
*
101040772 AAAACAAATTTTATTTTATTA
1 AAAACAACTTTTATTTTATTA
101040793 AATGAAAGAA
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
56 22 0.30
57 52 0.70
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (56 bp):
AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATATAA
Found at i:101041233 original size:18 final size:18
Alignment explanation
Indices: 101041212--101041246 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
101041202 AAAAGGAAAC
*
101041212 ATATAAGGGTTAGGATAT
1 ATATAAGGGCTAGGATAT
101041230 ATATAAGGGCTAGGATA
1 ATATAAGGGCTAGGATA
101041247 CGCACCTGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.29, T:0.29
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAT
Found at i:101041874 original size:7 final size:7
Alignment explanation
Indices: 101041864--101041917 Score: 81
Period size: 7 Copynumber: 7.7 Consensus size: 7
101041854 TTGTATACAT
101041864 AATACTA
1 AATACTA
101041871 AATACTA
1 AATACTA
*
101041878 AGTACTA
1 AATACTA
101041885 AATACTA
1 AATACTA
101041892 AATACTA
1 AATACTA
* *
101041899 TATATTA
1 AATACTA
101041906 AATACTA
1 AATACTA
101041913 AATAC
1 AATAC
101041918 GAAACGATTA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.54, C:0.13, G:0.02, T:0.31
Consensus pattern (7 bp):
AATACTA
Found at i:101042953 original size:48 final size:49
Alignment explanation
Indices: 101042864--101042959 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 49
101042854 AAAATTAAAA
**
101042864 TTAAAATTGCATAAATGAAAAAAAATATTAAATTGTATTGAAAAATTAG
1 TTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATTAG
* *
101042913 TTAAAATTGCATAAAT-TAAAAAAATATTAAATACTATTGAAATATTA
1 TTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATTA
101042960 AAATTATCAC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 27 0.63
49 16 0.37
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.34
Consensus pattern (49 bp):
TTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATTAG
Found at i:101043138 original size:22 final size:21
Alignment explanation
Indices: 101043117--101043172 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 21
101043107 AGCTTTGAGA
101043117 AAATTTGAGAGAATATGGGAG
1 AAATTTGAGAGAATATGGGAG
* * *
101043138 -AATTTGACAGAATTTTTGGA-
1 AAATTTGAGAGAA-TATGGGAG
101043158 AGAATTTGAGAGAAT
1 A-AATTTGAGAGAAT
101043173 TTGGATAGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
20 11 0.39
21 6 0.21
22 11 0.39
ACGTcount: A:0.41, C:0.02, G:0.27, T:0.30
Consensus pattern (21 bp):
AAATTTGAGAGAATATGGGAG
Found at i:101043173 original size:22 final size:22
Alignment explanation
Indices: 101043110--101043174 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
101043100 TAAAGAGAGC
101043110 TTTGAGAA-AATTTGAGAGAA--
1 TTTG-GAAGAATTTGAGAGAATT
* * *
101043130 TATGGGAGAATTTGACAGAATT
1 TTTGGAAGAATTTGAGAGAATT
101043152 TTTGGAAGAATTTGAGAGAATT
1 TTTGGAAGAATTTGAGAGAATT
101043174 T
1 T
101043175 GGATAGGAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 2 0.06
20 14 0.39
22 20 0.56
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.34
Consensus pattern (22 bp):
TTTGGAAGAATTTGAGAGAATT
Found at i:101057118 original size:46 final size:46
Alignment explanation
Indices: 101056984--101057244 Score: 162
Period size: 46 Copynumber: 5.5 Consensus size: 46
101056974 TTATGAGAGT
* * *
101056984 CAGTGTAAGACCATGTCTAGGACATGGCATCGGC-ATTGAGACG-AGAG
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTA-CGAGATGTA-AG
* * * * *
101057031 CTAGTATAAGA-CATATCTGGGACATGCATTGACCT-CTAGATGTAAG
1 C-AGTGTAAGACCATGTCTGGGACATGCATCG-GCTACGAGATGTAAG
* ***
101057077 CAAGTGTAAGA-CATGTATGGGACATGCATCGGCTACGAGATGTGTT
1 C-AGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTAAG
* * * *
101057123 CA-TGTAAGACCATGTTTGGGACATGACATCGGC-AC-ATATATAGG
1 CAGTGTAAGACCATGTCTGGGACATG-CATCGGCTACGAGATGTAAG
*
101057167 TTTCAGTGTAAGACCATGTCTGGGACATGACATCGG-TACGGATATGTGAGAG
1 ---CAGTGTAAGACCATGTCTGGGACATG-CATCGGCTAC-GAGATGT-A-AG
*
101057219 CTAGTGTAAAACCATGTCTGGGACAT
1 C-AGTGTAAGACCATGTCTGGGACAT
101057245 AGCGTCAGCC
Statistics
Matches: 169, Mismatches: 28, Indels: 31
0.74 0.12 0.14
Matches are distributed among these distances:
44 11 0.07
45 19 0.11
46 52 0.31
47 17 0.10
48 39 0.23
49 1 0.01
50 28 0.17
51 1 0.01
52 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTAAG
Found at i:101057182 original size:48 final size:47
Alignment explanation
Indices: 101057079--101057206 Score: 151
Period size: 48 Copynumber: 2.8 Consensus size: 47
101057069 GATGTAAGCA
101057079 AGTGTAAGA-CATGTATGGGACATG-CATCGGCTACGAGATGTGTTC
1 AGTGTAAGACCATGTATGGGACATGACATCGGCTACGAGATGTGTTC
* * *
101057124 A-TGTAAGACCATGTTTGGGACATGACATCGGC-AC-ATATATAGGTTTC
1 AGTGTAAGACCATGTATGGGACATGACATCGGCTACGAGATGT--G-TTC
*
101057171 AGTGTAAGACCATGTCTGGGACATGACATCGG-TACG
1 AGTGTAAGACCATGTATGGGACATGACATCGGCTACG
101057207 GATATGTGAG
Statistics
Matches: 71, Mismatches: 4, Indels: 12
0.82 0.05 0.14
Matches are distributed among these distances:
44 11 0.15
45 17 0.24
46 8 0.11
47 4 0.06
48 31 0.44
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (47 bp):
AGTGTAAGACCATGTATGGGACATGACATCGGCTACGAGATGTGTTC
Found at i:101057237 original size:50 final size:48
Alignment explanation
Indices: 101057079--101057244 Score: 150
Period size: 48 Copynumber: 3.5 Consensus size: 48
101057069 GATGTAAGCA
* * *
101057079 AGTGTAAGA-CATGTATGGGACATG-CATCGGCTAC-GAGAT-GTGT-TC
1 AGTGTAAGACCATGTCTGGGACATGACATCGGC-ACATATATAG-GTCTC
* *
101057124 A-TGTAAGACCATGTTTGGGACATGACATCGGCACATATATAGGTTTC
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCACATATATAGGTCTC
* *
101057171 AGTGTAAGACCATGTCTGGGACATGACATCGGTACGGATATGTGAGAG-CT-
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCAC--ATATAT-AG-GTCTC
*
101057221 AGTGTAAAACCATGTCTGGGACAT
1 AGTGTAAGACCATGTCTGGGACAT
101057245 AGCGTCAGCC
Statistics
Matches: 103, Mismatches: 8, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
44 7 0.07
45 17 0.17
46 12 0.12
47 4 0.04
48 31 0.30
50 28 0.27
51 3 0.03
52 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGACATCGGCACATATATAGGTCTC
Found at i:101066927 original size:37 final size:37
Alignment explanation
Indices: 101066824--101066949 Score: 112
Period size: 37 Copynumber: 3.4 Consensus size: 37
101066814 TATTCAATGG
* *
101066824 ATAATACTCGGTTGAGC-TTACTCGACATATCAGTAA
1 ATAACACTCGGTTGAGCTTTACTCGATATATCAGTAA
* * * * *
101066860 ATAACTCTCAGTTGAGCTTTATTC-AGTATATTAGTAG
1 ATAACACTCGGTTGAGCTTTACTCGA-TATATCAGTAA
* * **
101066897 ATATCACTCGGTTGAGCTTTAGTCGATATATCAACAA
1 ATAACACTCGGTTGAGCTTTACTCGATATATCAGTAA
* *
101066934 GTAACACTCAGTTGAG
1 ATAACACTCGGTTGAG
101066950 TAACATTCAG
Statistics
Matches: 69, Mismatches: 18, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
36 15 0.22
37 53 0.77
38 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (37 bp):
ATAACACTCGGTTGAGCTTTACTCGATATATCAGTAA
Found at i:101070837 original size:34 final size:34
Alignment explanation
Indices: 101070785--101070852 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
101070775 GCATTTTTGA
* *
101070785 CACTATACTGAGATGGGCTAAGGCCCAA-ACTGT
1 CACTATACTGAAAAGGGCTAAGGCCCAAGACTGT
*
101070818 CACTGATACTGAAAAGGGCTTAGGCCCAAGACTGT
1 CACT-ATACTGAAAAGGGCTAAGGCCCAAGACTGT
101070853 TCAACTGTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 4 0.13
34 21 0.70
35 5 0.17
ACGTcount: A:0.31, C:0.24, G:0.25, T:0.21
Consensus pattern (34 bp):
CACTATACTGAAAAGGGCTAAGGCCCAAGACTGT
Found at i:101073593 original size:12 final size:12
Alignment explanation
Indices: 101073565--101073601 Score: 56
Period size: 12 Copynumber: 2.9 Consensus size: 12
101073555 TTTTTTTAAT
101073565 TTTTATTATCATTA
1 TTTTATTAT--TTA
101073579 TTTTATTATTTA
1 TTTTATTATTTA
101073591 TTTTATTATTT
1 TTTTATTATTT
101073602 CCTGCACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 14 0.61
14 9 0.39
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTATTATTTA
Found at i:101077975 original size:22 final size:21
Alignment explanation
Indices: 101077945--101078010 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
101077935 TACAAATTAA
101077945 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
101077967 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
101077988 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
101078007 ATCT
1 ATCT
101078011 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:101077997 original size:19 final size:19
Alignment explanation
Indices: 101077962--101078058 Score: 153
Period size: 19 Copynumber: 5.1 Consensus size: 19
101077952 AGATTACAAG
101077962 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
101077983 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101078002 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
101078019 ATCATATTTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101078038 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101078057 AT
1 AT
101078059 TCTTAAAGAT
Statistics
Matches: 72, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
17 16 0.22
19 47 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:101078031 original size:36 final size:37
Alignment explanation
Indices: 101077962--101078058 Score: 142
Period size: 36 Copynumber: 2.5 Consensus size: 37
101077952 AGATTACAAG
101077962 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
*
101078002 ATCATATCTAAGATTG-TATCATATTTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
101078038 ATCATATCTAAGATTGCATAT
1 ATCATATCTAAGATTG-ATAT
101078059 TCTTAAAGAT
Statistics
Matches: 54, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.65
38 10 0.19
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:101078216 original size:22 final size:23
Alignment explanation
Indices: 101078188--101078237 Score: 93
Period size: 22 Copynumber: 2.2 Consensus size: 23
101078178 TTTGTTTTAT
101078188 TTTTATTTTTTGGG-GTTTATTA
1 TTTTATTTTTTGGGAGTTTATTA
101078210 TTTTATTTTTTGGGAGTTTATTA
1 TTTTATTTTTTGGGAGTTTATTA
101078233 TTTTA
1 TTTTA
101078238 AATACTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 14 0.52
23 13 0.48
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (23 bp):
TTTTATTTTTTGGGAGTTTATTA
Found at i:101087539 original size:43 final size:43
Alignment explanation
Indices: 101087491--101087649 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
101087481 AGGTCATACA
*
101087491 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAATATCG
*** ***
101087534 ATGCCATTATCCCAGATAG-GGTCTTACACAAAATCAAATA-CG
1 ATGCCAACGTCCCAGAT-GTGGTCTTACATGTAATCAAATATCG
** * *
101087576 ATGCCAACGTCTTAGATGTGGTTTTACATGTAAATCATAA-GTCG
1 ATGCCAACGTCCCAGATGTGGTCTTACATGT-AATCA-AATATCG
* *
101087620 ATGCCAATGTCCCAGATGTGGGCTTACATG
1 ATGCCAACGTCCCAGATGTGGTCTTACATG
101087650 ATCACACGTA
Statistics
Matches: 89, Mismatches: 22, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
41 1 0.01
42 22 0.25
43 36 0.40
44 30 0.34
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (43 bp):
ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAATATCG
Found at i:101087646 original size:86 final size:85
Alignment explanation
Indices: 101087486--101087647 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 85
101087476 CGAAAAGGTC
*
101087486 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCATTATCCCAGAT
1 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGAT
*
101087551 AGGGTCTTACACAAAATCAA
66 AGGGGCTTACACAAAATCAA
* ** * * * *
101087571 ATACGATGCCAACGTCTTAGATGTGGTTTTACATGTAAATCATAA-GTCGATGCCAATGTCCCAG
1 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AATATCGATGCCAATATCCCAG
101087635 AT-GTGGGCTTACA
64 ATAG-GGGCTTACA
101087648 TGATCACACG
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
85 32 0.49
86 31 0.48
87 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGAT
AGGGGCTTACACAAAATCAA
Found at i:101092651 original size:19 final size:18
Alignment explanation
Indices: 101092623--101092672 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 18
101092613 GGATTTTTTT
101092623 AATATTAATATAATTA-A
1 AATATTAATATAATTATA
*
101092640 AATTATTTAATATTATTATA
1 AA-TA-TTAATATAATTATA
101092660 AATATTAATATAA
1 AATATTAATATAA
101092673 AATTTCAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 2 0.07
18 10 0.36
19 13 0.46
20 3 0.11
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AATATTAATATAATTATA
Found at i:101093072 original size:26 final size:26
Alignment explanation
Indices: 101093043--101093092 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
101093033 ATATATTTAT
*
101093043 TAAAATAATTGTAATATTTTAATTAC
1 TAAAATAATTATAATATTTTAATTAC
* *
101093069 TAAAATAGTTATCATATTTTAATT
1 TAAAATAATTATAATATTTTAATT
101093093 GTATTCAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (26 bp):
TAAAATAATTATAATATTTTAATTAC
Found at i:101096755 original size:18 final size:19
Alignment explanation
Indices: 101096720--101096757 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
101096710 ATTTGAATTC
101096720 AAAATAGTGAATTTTTTTT
1 AAAATAGTGAATTTTTTTT
101096739 AAAATAGTGAATTTTTTTT
1 AAAATAGTGAATTTTTTTT
101096758 CCTCCGCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.53
Consensus pattern (19 bp):
AAAATAGTGAATTTTTTTT
Found at i:101101628 original size:5 final size:6
Alignment explanation
Indices: 101101613--101101660 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
101101603 TGCGTACTTC
* * *
101101613 AAAAAT AAAAAT AAAAAT AAAAAGT ATTAAAT TAAATT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAA-T A-AAAAT AAAAAT AAAAAT AAAA
101101661 CAACTAATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
6 28 0.82
7 3 0.09
8 3 0.09
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (6 bp):
AAAAAT
Found at i:101113332 original size:19 final size:19
Alignment explanation
Indices: 101113308--101113348 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
101113298 GATGCCTCCT
*
101113308 TTACATT-CATGCATTTGCA
1 TTACATTACAT-CATATGCA
101113327 TTACATTACATCATATGCA
1 TTACATTACATCATATGCA
101113346 TTA
1 TTA
101113349 AAGGTCATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (19 bp):
TTACATTACATCATATGCA
Found at i:101118646 original size:93 final size:93
Alignment explanation
Indices: 101118539--101118709 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
101118529 GCCCCTAAGT
* *
101118539 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101118604 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
101118632 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101118697 CGAGTTCGGATGC
66 CGAGTTCGGATGC
101118710 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:101118706 original size:46 final size:46
Alignment explanation
Indices: 101118534--101118706 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
101118524 AACCCGCCCC
* * *
101118534 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
101118580 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
101118628 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
101118673 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
101118707 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:101121133 original size:14 final size:15
Alignment explanation
Indices: 101121090--101121144 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
101121080 CAAGGAAACC
101121090 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
101121105 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
101121120 GAATAAAG-AATCCA
1 GAATAAAGAAATCCA
101121134 GAATAAAGAAA
1 GAATAAAGAAA
101121145 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 15 0.43
15 19 0.54
16 1 0.03
ACGTcount: A:0.60, C:0.11, G:0.16, T:0.13
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:101124220 original size:93 final size:93
Alignment explanation
Indices: 101124113--101124283 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
101124103 GCCCCTAAGT
* *
101124113 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101124178 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
101124206 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101124271 CGAGTTCGGATGC
66 CGAGTTCGGATGC
101124284 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:101124280 original size:46 final size:46
Alignment explanation
Indices: 101124108--101124280 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
101124098 AACCCGCCCC
* * *
101124108 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
101124154 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
101124202 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
101124247 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
101124281 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:101132912 original size:94 final size:93
Alignment explanation
Indices: 101132771--101132985 Score: 315
Period size: 94 Copynumber: 2.3 Consensus size: 93
101132761 GCCTATTCCT
* *
101132771 ATAATAAGAATTGTTGTTGGGT-TGTTGTCATGGTCCTACTCTTATAGACCTTTCTTCTTGTTAT
1 ATAATAATAATTGTTGTTGTGTCT-TTGTCATGGTCCTACTCTTATAGACCTTTCTTCTTGTTAT
* *
101132835 AACTCTTAAGGTTTGTACTTGTATCTTCA
65 AACACTTAAGGTTTATACTTGTATCTTCA
* *
101132864 ATAATAATAATTGTTGTTGTCGTCTTTGTCATGGTTCTACTCTTATAGACCTTTCTTGTTGTTAT
1 ATAATAATAATTGTTGTTGT-GTCTTTGTCATGGTCCTACTCTTATAGACCTTTCTTCTTGTTAT
*
101132929 AAGACTTAAGGTTTATACTTGTATCTTCA
65 AACACTTAAGGTTTATACTTGTATCTTCA
* * *
101132958 CTAATAATAACTGTTGTTGTGTCATTGT
1 ATAATAATAATTGTTGTTGTGTCTTTGT
101132986 TGCCCTACTA
Statistics
Matches: 110, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
93 25 0.23
94 84 0.76
95 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.47
Consensus pattern (93 bp):
ATAATAATAATTGTTGTTGTGTCTTTGTCATGGTCCTACTCTTATAGACCTTTCTTCTTGTTATA
ACACTTAAGGTTTATACTTGTATCTTCA
Found at i:101137856 original size:21 final size:22
Alignment explanation
Indices: 101137818--101137861 Score: 65
Period size: 20 Copynumber: 2.0 Consensus size: 22
101137808 GAACGAACCC
101137818 AAAATCAGAGAATCAGAAAACAA
1 AAAATCAGAGAATCAG-AAACAA
101137841 AAAATCA-A-AATCAGAAACAA
1 AAAATCAGAGAATCAGAAACAA
101137861 A
1 A
101137862 GGTGTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 6 0.29
22 1 0.05
23 7 0.33
ACGTcount: A:0.68, C:0.14, G:0.09, T:0.09
Consensus pattern (22 bp):
AAAATCAGAGAATCAGAAACAA
Found at i:101138530 original size:25 final size:25
Alignment explanation
Indices: 101138492--101138560 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
101138482 TTATTTTATT
*
101138492 TTAT-TTTTAATATTATTCA-TACTA
1 TTATATTTTATTATTATT-ATTACTA
* *
101138516 TTATATTTTATTATTGTTATTATTA
1 TTATATTTTATTATTATTATTACTA
*
101138541 TTATATTTTTTTATTTATTA
1 TTATATTTTATTA-TTATTA
101138561 GCATTTCATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 5 0.14
25 27 0.73
26 5 0.14
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (25 bp):
TTATATTTTATTATTATTATTACTA
Found at i:101138538 original size:3 final size:3
Alignment explanation
Indices: 101138481--101138637 Score: 62
Period size: 3 Copynumber: 53.0 Consensus size: 3
101138471 ATTTTTTCTC
* * *
101138481 ATT ATT -TT ATT -TT ATT TTT AAT ATT ATT CA-T ACT ATT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT
* * **
101138523 -TT ATT ATT GTT ATT ATT ATT A-T ATT -TT TTT ATTT ATT AGC ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * *
101138566 -TC ATT ATT ATT ATT TTT ACTT AAT ACTT A-T ATAT ATT ATAT AGT ATT
1 ATT ATT ATT ATT ATT ATT A-TT ATT A-TT ATT AT-T ATT AT-T ATT ATT
* * *
101138613 ATT AAT AGTT TTT AAT ATT ATT ATT
1 ATT ATT A-TT ATT ATT ATT ATT ATT
101138638 TTTGTTAATA
Statistics
Matches: 112, Mismatches: 26, Indels: 32
0.66 0.15 0.19
Matches are distributed among these distances:
2 16 0.14
3 81 0.72
4 15 0.13
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:101138547 original size:20 final size:19
Alignment explanation
Indices: 101138514--101138560 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
101138504 TTATTCATAC
*
101138514 TATTA-TATTTTATTATTGT
1 TATTATTATTATATT-TTGT
*
101138533 TATTATTATTATATTTTTT
1 TATTATTATTATATTTTGT
101138552 TATTTATTA
1 TA-TTATTA
101138561 GCATTTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (19 bp):
TATTATTATTATATTTTGT
Found at i:101138602 original size:29 final size:28
Alignment explanation
Indices: 101138570--101138647 Score: 77
Period size: 29 Copynumber: 2.7 Consensus size: 28
101138560 AGCATTTCAT
101138570 TATTATTATTTTTACTTAATAC-TTATATA
1 TATTATTATTTTTA-TTAATACTTTATA-A
* * * *
101138599 TATTATATAGTATTATTAATAGTTTTTAA
1 TATTAT-TATTTTTATTAATACTTTATAA
*
101138628 TATTATTATTTTTGTTAATA
1 TATTATTATTTTTATTAATA
101138648 TATTCGTATG
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
28 11 0.28
29 19 0.47
30 10 0.25
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.59
Consensus pattern (28 bp):
TATTATTATTTTTATTAATACTTTATAA
Found at i:101138755 original size:13 final size:13
Alignment explanation
Indices: 101138730--101138763 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
101138720 TAAATTATGT
101138730 ATATTACTTTTTAA
1 ATATTA-TTTTTAA
*
101138744 ATATTATTTTTAT
1 ATATTATTTTTAA
101138757 ATATTAT
1 ATATTAT
101138764 GTATATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (13 bp):
ATATTATTTTTAA
Found at i:101138768 original size:11 final size:11
Alignment explanation
Indices: 101138754--101138806 Score: 65
Period size: 11 Copynumber: 4.9 Consensus size: 11
101138744 ATATTATTTT
101138754 TATATATTATG
1 TATATATTATG
*
101138765 TATATATT-TT
1 TATATATTATG
101138775 TATATATTATG
1 TATATATTATG
*
101138786 TATATATTTATC
1 TATATA-TTATG
101138798 TA-ATATTAT
1 TATATATTAT
101138807 TAATAATTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
10 13 0.35
11 18 0.49
12 6 0.16
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (11 bp):
TATATATTATG
Found at i:101138773 original size:21 final size:21
Alignment explanation
Indices: 101138748--101138794 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
101138738 TTTTAAATAT
101138748 TATTTTTATATATTATGTATA
1 TATTTTTATATATTATGTATA
101138769 TATTTTTATATATTATGTATA
1 TATTTTTATATATTATGTATA
101138790 TATTT
1 TATTT
101138795 ATCTAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (21 bp):
TATTTTTATATATTATGTATA
Found at i:101138775 original size:34 final size:34
Alignment explanation
Indices: 101138723--101138809 Score: 97
Period size: 34 Copynumber: 2.6 Consensus size: 34
101138713 TTAATATTAA
* *
101138723 ATTATGTATATTACTTTTTAAATATTATTTTTATAT
1 ATTATGTATA-TA-TTTTTAAATATTATGTATATAT
*
101138759 ATTATGTATATATTTTTATATATTATGTATATAT
1 ATTATGTATATATTTTTAAATATTATGTATATAT
* *
101138793 -TTATCTA-ATATTATTAA
1 ATTATGTATATATTTTTAA
101138810 TAATTGTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
32 8 0.18
33 6 0.13
34 19 0.42
35 2 0.04
36 10 0.22
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (34 bp):
ATTATGTATATATTTTTAAATATTATGTATATAT
Found at i:101139089 original size:8 final size:8
Alignment explanation
Indices: 101139076--101139172 Score: 56
Period size: 8 Copynumber: 11.2 Consensus size: 8
101139066 ATGTAAACTT
101139076 TTTTATTA
1 TTTTATTA
101139084 TTTTATTA
1 TTTTATTA
*
101139092 TTTTTTTA
1 TTTTATTA
101139100 TTTT-TTA
1 TTTTATTA
*
101139107 TTTGTCAATA
1 TTT-T-ATTA
101139117 TTATTTATTA
1 -T-TTTATTA
*
101139127 TTTTTCTAATA
1 --TTT-TATTA
101139138 TTTTGA-TA
1 TTTT-ATTA
101139146 TTTTA-TA
1 TTTTATTA
101139153 TTTTATATA
1 TTTTAT-TA
101139162 TTTTTATTA
1 -TTTTATTA
101139171 TT
1 TT
101139173 CGCATCATTT
Statistics
Matches: 74, Mismatches: 4, Indels: 22
0.74 0.04 0.22
Matches are distributed among these distances:
7 14 0.19
8 29 0.39
9 8 0.11
10 13 0.18
11 8 0.11
12 2 0.03
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (8 bp):
TTTTATTA
Found at i:101139122 original size:20 final size:21
Alignment explanation
Indices: 101139097--101139139 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
101139087 TATTATTTTT
*
101139097 TTATTTTTTATTTGTC-AATA
1 TTATTTATTATTTGTCTAATA
*
101139117 TTATTTATTATTTTTCTAATA
1 TTATTTATTATTTGTCTAATA
101139138 TT
1 TT
101139140 TTGATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (21 bp):
TTATTTATTATTTGTCTAATA
Found at i:101151115 original size:73 final size:75
Alignment explanation
Indices: 101151025--101151211 Score: 263
Period size: 73 Copynumber: 2.5 Consensus size: 75
101151015 TTCTGTTTTC
* * * *
101151025 AAAATTCAATTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTT-AATTT
*
101151089 GTCTT-TC-AA
65 CTCTTATCAAA
* *
101151098 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTTAATTTC
*
101151163 TGTTCATCAAA
66 TCTT-ATCAAA
101151174 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
101151212 GGTTCACATG
Statistics
Matches: 101, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
73 55 0.54
74 5 0.05
75 2 0.02
76 39 0.39
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTTAATTTC
TCTTATCAAA
Found at i:101151540 original size:91 final size:91
Alignment explanation
Indices: 101151327--101151563 Score: 349
Period size: 91 Copynumber: 2.6 Consensus size: 91
101151317 ATTCTCAATT
* * * *
101151327 TATG-TTT-CAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC-G-GATATGCCGAG
1 TATGTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTCACATGCCGAA
* * **
101151388 GTATTTTCAAATTCTATTTTTCAATT
66 GTATTTCCAAATTCTAGTTTTCAAAC
101151414 TATGTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTCACATGCCGA
1 TATGTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-TCACATGCCGA
101151479 AGTATTTCCAAATTCT-GTTTTCAAAC
65 AGTATTTCCAAATTCTAGTTTTCAAAC
101151505 TATGTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
1 TATGTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GTCACA
101151564 CTGAGGTATT
Statistics
Matches: 136, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
87 4 0.03
88 3 0.02
89 41 0.30
90 1 0.01
91 64 0.47
92 23 0.17
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (91 bp):
TATGTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTCACATGCCGAA
GTATTTCCAAATTCTAGTTTTCAAAC
Found at i:101151618 original size:253 final size:253
Alignment explanation
Indices: 101151170--101151833 Score: 1138
Period size: 253 Copynumber: 2.6 Consensus size: 253
101151160 TTCTGTTCAT
*
101151170 CAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGGCGAAGTATTTCC
1 CAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCCGAAGTATTTCC
* *
101151235 AAATTCTGTTTTCAAACTATGTTTTCCAAAAATATCAACTCATATTGCGATAGGTGAGTTGAGCC
66 AAATTCTGTTTTCAAACTATGTTTTCCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCC
101151300 TCAGGTCACACTGAGGTATTCTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTG
131 TCAGGTCACACTGAGGTATTCTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTG
*
101151365 AGTTGAACCTCGGATATGCCGAGGTATTTTCAAATTCTATTTTTCAATTTATGTTTTC
196 AGTTGAACCTCGGACATGCCGAGGTATTTTCAAATTCTATTTTTCAATTTATGTTTTC
*
101151423 CAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTCACATGCCGAAGTATTTCC
1 CAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCCGAAGTATTTCC
*
101151488 AAATTCTGTTTTCAAACTATGTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 AAATTCTGTTTTCAAACTATGTTTTCC-AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGC
101151553 CTCAGGTCACACTGAGGTATTCTCAATTTATGTTT-AAAAAAAATCAACTCATATTGCGAGAGGT
130 CTCAGGTCACACTGAGGTATTCTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAGGT
* *
101151617 GAGTTGAACCTCGGACATGCTGAGGTATTTTCAAATTCTGTTTTTCAATTTATGTTTTC
195 GAGTTGAACCTCGGACATGCCGAGGTATTTTCAAATTCTATTTTTCAATTTATGTTTTC
** *
101151676 C--AAAAAATCAACTCATATTGTAAGAGGTGAGTTGAGCCTCGGTTCACATGCCGAGGTATTTCC
1 CAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCCGAAGTATTTCC
*
101151739 AAATTCTGTTTTCAAACTATGTTTTCCAAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCC
66 AAATTCTGTTTTCAAACTATGTTTTCCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCC
* *
101151804 T-TGGCTCACACGCTGAGGTATTTTCAATTT
131 TCAGG-TCACA--CTGAGGTATTCTCAATTT
101151834 CTGCTTTTCA
Statistics
Matches: 392, Mismatches: 15, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
249 2 0.01
250 42 0.11
251 85 0.22
252 17 0.04
253 176 0.45
254 70 0.18
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (253 bp):
CAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCCGAAGTATTTCC
AAATTCTGTTTTCAAACTATGTTTTCCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCC
TCAGGTCACACTGAGGTATTCTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTG
AGTTGAACCTCGGACATGCCGAGGTATTTTCAAATTCTATTTTTCAATTTATGTTTTC
Found at i:101151889 original size:179 final size:177
Alignment explanation
Indices: 101151589--101151933 Score: 525
Period size: 179 Copynumber: 1.9 Consensus size: 177
101151579 TTTATGTTTA
* *
101151589 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCTGAGGTATTTTCAAATT
1 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAACCTCGGACACGCTGAGGTATTTTCAAATT
* * *
101151654 CTGTTTTTCAATTTATGTTTTCCAAAAAATCAACTCATATTGTAAGAGGTGAGTTGAGCCTCGGT
66 CTGCTTTTCAATTTATGTTTTCCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGG
101151719 TCACA-TGCCGAGGTATTTCCAAATTCTGTTTTCAAACTATGTTTTCC
131 TCACACT-CCGAGGTATTTCCAAATTCTGTTTTCAAACTATGTTTTCC
* * *
101151766 AAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAACCTCGG---ACACGCTGAGGTATTTTCAA
* *
101151831 TTTCTGCTTTTCAATTTATGTGTTT-C-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
63 ATTCTGCTTTTCAATTTATGT-TTTCCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
*
101151894 CGGGTCACACTCCGAGGTATTTCCAATTTCTGTTTTCAAA
127 CGGGTCACACTCCGAGGTATTTCCAAATTCTGTTTTCAAA
101151934 AAAAAAATCA
Statistics
Matches: 152, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
177 38 0.25
179 71 0.47
180 40 0.26
181 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (177 bp):
AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAACCTCGGACACGCTGAGGTATTTTCAAATT
CTGCTTTTCAATTTATGTTTTCCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGG
TCACACTCCGAGGTATTTCCAAATTCTGTTTTCAAACTATGTTTTCC
Found at i:101151902 original size:89 final size:89
Alignment explanation
Indices: 101151575--101151932 Score: 449
Period size: 90 Copynumber: 4.0 Consensus size: 89
101151565 TGAGGTATTC
** * *
101151575 TCAATTTATG-TTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC-GG--ACATG
1 TCAATTTATGTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
* *
101151636 CTGAGGTATTTTCAAATTCTGTTTT
66 CCGAGGTATTTCCAAATTCTG-TTT
** * *
101151661 TCAATTTATGTTTTCCAAAAAATCAACTCATATTGTAAGAGGTGAGTTGAGCCTCGGTTCACATG
1 TCAATTTATGTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
101151726 CCGAGGTATTTCCAAATTCTGTTT
66 CCGAGGTATTTCCAAATTCTGTTT
** * * * *
101151750 TCAAACTATGTTTTCCAAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTTGGCTCACAC
1 TCAATTTATGTTTTCC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
* * *
101151815 GCTGAGGTATTTTCAATTTCTGCTTT
65 GCCGAGGTATTTCCAAATTCTG-TTT
101151841 TCAATTTATGTGTTT-C-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
1 TCAATTTATGT-TTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
* *
101151904 TCCGAGGTATTTCCAATTTCTGTTT
65 GCCGAGGTATTTCCAAATTCTGTTT
101151929 TCAA
1 TCAA
101151933 AAAAAAAATC
Statistics
Matches: 238, Mismatches: 27, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
86 10 0.04
87 39 0.16
88 8 0.03
89 79 0.33
90 86 0.36
91 13 0.05
92 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (89 bp):
TCAATTTATGTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
CCGAGGTATTTCCAAATTCTGTTT
Found at i:101152498 original size:25 final size:25
Alignment explanation
Indices: 101152461--101152508 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
101152451 AAAAGTCTTT
* *
101152461 ACTCTATTATCGTTACATGACAACA
1 ACTCTATTATCGTGACACGACAACA
* *
101152486 ACTCTCTTCTCGTGACACGACAA
1 ACTCTATTATCGTGACACGACAA
101152509 TGAGTAAAGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.29, G:0.10, T:0.29
Consensus pattern (25 bp):
ACTCTATTATCGTGACACGACAACA
Found at i:101153049 original size:21 final size:22
Alignment explanation
Indices: 101153011--101153054 Score: 56
Period size: 20 Copynumber: 2.0 Consensus size: 22
101153001 GAACGAACCC
*
101153011 AAAATCAGAGAATTAGAAAACAA
1 AAAATCAGAGAATCAG-AAACAA
101153034 AAAATCA-A-AATCAGAAACAA
1 AAAATCAGAGAATCAGAAACAA
101153054 A
1 A
101153055 GGTGATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 5 0.25
22 1 0.05
23 7 0.35
ACGTcount: A:0.68, C:0.11, G:0.09, T:0.11
Consensus pattern (22 bp):
AAAATCAGAGAATCAGAAACAA
Found at i:101153753 original size:25 final size:22
Alignment explanation
Indices: 101153717--101153776 Score: 61
Period size: 25 Copynumber: 2.7 Consensus size: 22
101153707 TCTCATTATT
*
101153717 TTATT-TTA-ATTTTAATATTG
1 TTATTATTATATTTTAATAATG
*
101153737 TTCATACTATTATATTTTATTAATG
1 TT-AT--TATTATATTTTAATAATG
101153762 TTATTATTATATTTT
1 TTATTATTATATTTT
101153777 TTATTAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
20 2 0.06
21 2 0.06
22 11 0.33
23 1 0.03
24 5 0.15
25 12 0.36
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (22 bp):
TTATTATTATATTTTAATAATG
Found at i:101153971 original size:15 final size:15
Alignment explanation
Indices: 101153945--101153980 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
101153935 TATATTATGT
101153945 ATATTA-TTTTTTAA
1 ATATTATTTTTTTAA
*
101153959 ATATTATTTTTTTAT
1 ATATTATTTTTTTAA
101153974 ATATTAT
1 ATATTAT
101153981 GTATATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
ATATTATTTTTTTAA
Found at i:101154004 original size:25 final size:25
Alignment explanation
Indices: 101153973--101154069 Score: 101
Period size: 25 Copynumber: 3.9 Consensus size: 25
101153963 TATTTTTTTA
101153973 TATATTATGTATATATTTTAATAAC
1 TATATTATGTATATATTTTAATAAC
* * *
101153998 TATATTATATATGTATTTTTAA-CAC
1 TATATTATGTATATA-TTTTAATAAC
* * *
101154023 TATATTATGTACATACTTTAATATC
1 TATATTATGTATATATTTTAATAAC
101154048 -ATTATTATGTATAT-TTTTAATA
1 TA-TATTATGTATATATTTTAATA
101154070 TATATGTATA
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
24 13 0.22
25 39 0.67
26 6 0.10
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (25 bp):
TATATTATGTATATATTTTAATAAC
Found at i:101154054 original size:50 final size:48
Alignment explanation
Indices: 101153973--101154067 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 48
101153963 TATTTTTTTA
* *
101153973 TATATTATGTATATATTTTAATAACTATATTATATATGTATTTTTAACAC
1 TATATTATGTACATACTTTAATAACTATATTATATA--TATTTTTAACAC
* *
101154023 TATATTATGTACATACTTTAATATC-ATTATTATGTATATTTTTAA
1 TATATTATGTACATACTTTAATAACTA-TATTATATATATTTTTAA
101154068 TATATATGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
48 9 0.22
49 1 0.03
50 30 0.75
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (48 bp):
TATATTATGTACATACTTTAATAACTATATTATATATATTTTTAACAC
Found at i:101154280 original size:13 final size:12
Alignment explanation
Indices: 101154262--101154304 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 12
101154252 TATTATTATG
101154262 TTTTTAATATATA
1 TTTTTAATAT-TA
101154275 TTTTTAATATTA
1 TTTTTAATATTA
101154287 TTTTGT-AT-TTA
1 TTTT-TAATATTA
101154298 TTTTTAA
1 TTTTTAA
101154305 ACTTTTAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 1 0.04
11 8 0.29
12 8 0.29
13 11 0.39
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (12 bp):
TTTTTAATATTA
Found at i:101154704 original size:25 final size:26
Alignment explanation
Indices: 101154650--101154751 Score: 162
Period size: 25 Copynumber: 4.2 Consensus size: 26
101154640 TTATGCAAAT
101154650 TGATAATGGGTT-GGTAAA---TCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101154672 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
101154697 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101154723 TGATAA-GGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101154748 TGAT
1 TGAT
101154752 TGGAATTTCA
Statistics
Matches: 75, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
22 12 0.16
23 6 0.08
25 48 0.64
26 9 0.12
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:101157477 original size:21 final size:22
Alignment explanation
Indices: 101157451--101157491 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
101157441 TATTTTTTTA
101157451 TTTTTTATTTGTC-AATATTAT
1 TTTTTTATTTGTCTAATATTAT
*
101157472 TTTTTTATTTTTCTAATATT
1 TTTTTTATTTGTCTAATATT
101157492 TTGATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTTTATTTGTCTAATATTAT
Found at i:101157517 original size:9 final size:8
Alignment explanation
Indices: 101157485--101157518 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
101157475 TTTATTTTTC
101157485 TAATATTT
1 TAATATTT
*
101157493 TGATATTT
1 TAATATTT
101157501 TAATATTT
1 TAATATTT
101157509 TATATATTT
1 TA-ATATTT
101157518 T
1 T
101157519 TATTATTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (8 bp):
TAATATTT
Found at i:101160307 original size:83 final size:83
Alignment explanation
Indices: 101160164--101160465 Score: 525
Period size: 83 Copynumber: 3.7 Consensus size: 83
101160154 AATCTTAGAT
* *
101160164 ATGATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAGATG
1 ATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATG
101160229 TTCTCAAACAGACTCAAG
66 TTCTCAAACAGACTCAAG
*
101160247 ATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATG
1 ATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATG
101160312 TTCTCAAACAGACTCAAG
66 TTCTCAAACAGACTCAAG
* * *
101160330 ATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATG
1 ATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATG
101160395 TTCTCAAACAGACTCAAG
66 TTCTCAAACAGACTCAAG
* *
101160413 ATGATTTGGCATCCTTGTGCTTACAAGGAACAAATTGA-GACATAGCTGATTTG
1 ATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTG
101160466 GCTTTCACGT
Statistics
Matches: 207, Mismatches: 12, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
82 14 0.07
83 193 0.93
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (83 bp):
ATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATG
TTCTCAAACAGACTCAAG
Found at i:101161260 original size:18 final size:18
Alignment explanation
Indices: 101161221--101161338 Score: 193
Period size: 18 Copynumber: 6.5 Consensus size: 18
101161211 ATGGAAATAT
101161221 AATCTTAGATATGATATGC
1 AATCTTAGATATGAT-TGC
101161240 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTGC
101161258 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTGC
*
101161276 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTGC
101161293 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTGC
*
101161311 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TGC
101161330 AATCTTAGA
1 AATCTTAGA
101161339 AGATATGATT
Statistics
Matches: 94, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
17 16 0.17
18 52 0.55
19 26 0.28
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTGC
Found at i:101161303 original size:35 final size:35
Alignment explanation
Indices: 101161221--101161338 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
101161211 ATGGAAATAT
*
101161221 AATCTTAGATATGATATGCAATCTTAGATATGATTGC
1 AATCTTAGATATGAT-TGCAATCTTAGATATGA-TAC
101161258 AATCTTAGATATGATTGCAATCTTAGATATGATAC
1 AATCTTAGATATGATTGCAATCTTAGATATGATAC
101161293 AATCTTAGATATGATTGCAATCTTAGATATGATATAC
1 AATCTTAGATATGATTGCAATCTTAGATATG--ATAC
101161330 AATCTTAGA
1 AATCTTAGA
101161339 AGATATGATT
Statistics
Matches: 78, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
35 33 0.42
36 17 0.22
37 28 0.36
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
AATCTTAGATATGATTGCAATCTTAGATATGATAC
Found at i:101161307 original size:53 final size:55
Alignment explanation
Indices: 101161221--101161338 Score: 204
Period size: 53 Copynumber: 2.2 Consensus size: 55
101161211 ATGGAAATAT
*
101161221 AATCTTAGATATGATATGCAATCTTAGATATGATTGCAATCTTAGATATGAT-TGC
1 AATCTTAGATATGATA-GCAATCTTAGATATGATTGCAATCTTAGATATGATATAC
101161276 AATCTTAGATATGATA-CAATCTTAGATATGATTGCAATCTTAGATATGATATAC
1 AATCTTAGATATGATAGCAATCTTAGATATGATTGCAATCTTAGATATGATATAC
101161330 AATCTTAGA
1 AATCTTAGA
101161339 AGATATGATT
Statistics
Matches: 61, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
53 34 0.56
54 11 0.18
55 16 0.26
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (55 bp):
AATCTTAGATATGATAGCAATCTTAGATATGATTGCAATCTTAGATATGATATAC
Found at i:101161851 original size:18 final size:17
Alignment explanation
Indices: 101161827--101161886 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
101161817 CCAATATATT
101161827 TTATATTTTTTATATAA
1 TTATATTTTTTATATAA
*
101161844 TTAT-TATTCTTATA-AA
1 TTATAT-TTTTTATATAA
101161860 -TATATTTTTTATTATATA
1 TTATATTTTTTA-TATA-A
101161878 TTATATTTT
1 TTATATTTT
101161887 AAATGTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
15 8 0.23
16 6 0.17
17 12 0.34
18 1 0.03
19 8 0.23
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATATTTTTTATATAA
Found at i:101161871 original size:15 final size:16
Alignment explanation
Indices: 101161828--101161886 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 16
101161818 CAATATATTT
101161828 TATATTTTTTATATAA
1 TATATTTTTTATATAA
101161844 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
101161860 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
101161878 TTATATTTT
1 -TATATTTT
101161887 AAATGTATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
15 7 0.19
16 10 0.28
17 10 0.28
18 1 0.03
19 8 0.22
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:101167043 original size:16 final size:15
Alignment explanation
Indices: 101167022--101167069 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
101167012 GATGTGAATA
101167022 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
101167038 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
101167053 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
101167069 A
1 A
101167070 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:101167052 original size:8 final size:8
Alignment explanation
Indices: 101167018--101167069 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
101167008 CAATGATGTG
*
101167018 AATAATAA
1 AATATTAA
101167026 AATATATAA
1 AATAT-TAA
101167035 AATA-TAA
1 AATATTAA
101167042 AATATTAA
1 AATATTAA
*
101167050 AATATCAA
1 AATATTAA
*
101167058 AATATTAG
1 AATATTAA
101167066 AATA
1 AATA
101167070 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:101167069 original size:24 final size:24
Alignment explanation
Indices: 101167017--101167073 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
101167007 ACAATGATGT
*
101167017 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
101167041 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
101167065 GAATAATAA
1 GAATAATAA
101167074 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:101167248 original size:25 final size:25
Alignment explanation
Indices: 101167220--101167284 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
101167210 CGTGATAATA
*
101167220 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAGTG
101167245 TTAAAAATATATACATAATATA--G
1 TTAAAAATATATACATAATATAGTG
*
101167268 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
101167285 GATAACATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 14 0.37
23 3 0.08
25 21 0.55
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAAAAATATATACATAATATAGTG
Found at i:101167332 original size:25 final size:25
Alignment explanation
Indices: 101167304--101167437 Score: 86
Period size: 25 Copynumber: 5.6 Consensus size: 25
101167294 TAGAAAAAAA
101167304 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
101167329 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* *
101167354 ATATATATACGTAATATAGA-ATTTAA-
1 ATATATA-A-ATAATATA-ATATTAAAG
** *
101167380 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
101167402 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
101167425 AAATAT-AATAATA
1 ATATATAAATAATA
101167438 ACAAAAAAGA
Statistics
Matches: 84, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
21 4 0.05
22 12 0.14
23 18 0.21
24 5 0.06
25 33 0.39
26 2 0.02
27 10 0.12
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:101167341 original size:14 final size:13
Alignment explanation
Indices: 101167301--101167351 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
101167291 ATGTAGAAAA
101167301 AAAATATATAAAT
1 AAAATATATAAAT
* *
101167314 AATATA-AT-ATT
1 AAAATATATAAAT
101167325 AAAGATATATAAAT
1 AAA-ATATATAAAT
101167339 AAAATAGTATAAA
1 AAAATA-TATAAA
101167352 ATATATATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
11 4 0.13
12 5 0.17
13 10 0.33
14 11 0.37
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (13 bp):
AAAATATATAAAT
Found at i:101167361 original size:27 final size:27
Alignment explanation
Indices: 101167234--101167372 Score: 92
Period size: 27 Copynumber: 5.3 Consensus size: 27
101167224 AAATATGTAC
* * *
101167234 ATAATATAGTGTTAAA-A-ATATATAC
1 ATAATATAGTATAAAATATATATATAA
* *
101167259 ATAATATAGT-TAAGATATATACATAA
1 ATAATATAGTATAAAATATATATATAA
* * * *
101167285 GATAACAT-GTAGAAAAAAAATATATAA
1 -ATAATATAGTATAAAATATATATATAA
* * *
101167312 ATAATATAATAT-TAA-AGATATATAA
1 ATAATATAGTATAAAATATATATATAA
* *
101167337 ATAAAATAGTATAAAATATATATATAC
1 ATAATATAGTATAAAATATATATATAA
*
101167364 GTAATATAG
1 ATAATATAG
101167373 AATTTAAAAT
Statistics
Matches: 85, Mismatches: 22, Indels: 12
0.71 0.18 0.10
Matches are distributed among these distances:
24 3 0.04
25 30 0.35
26 18 0.21
27 34 0.40
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (27 bp):
ATAATATAGTATAAAATATATATATAA
Found at i:101167993 original size:30 final size:30
Alignment explanation
Indices: 101167961--101168059 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
101167951 TGGAGCAAGT
* *
101167961 GTGGCTAGTGGATTTGGTGGTGGAAAAGGT
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
*
101167991 GTGGCTAGTGGAGTTGGTGGTGGAAAAAGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
*
101168021 GTGGCTAGTGGAGTTGGTGGTAGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
101168051 GTGGCTAGT
1 GTGGCTAGT
101168060 TGAGAAAAGT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.23, C:0.04, G:0.46, T:0.26
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
Found at i:101168025 original size:60 final size:60
Alignment explanation
Indices: 101167915--101168059 Score: 175
Period size: 60 Copynumber: 2.4 Consensus size: 60
101167905 TAGGTACAAG
* * ** * *
101167915 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGTAGGTAATGGAAAAAGAGTGGCTAGTGGAGT
* **
101167975 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTAGGTAATGGAAAAAGAGTGGCTAGTGGAGT
* *
101168035 TGGTGGTAGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
101168060 TGAGAAAAGT
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
59 2 0.03
60 71 0.97
ACGTcount: A:0.23, C:0.04, G:0.46, T:0.26
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTAGGTAATGGAAAAAGAGTGGCTAGTGGAGT
Found at i:101169020 original size:76 final size:74
Alignment explanation
Indices: 101168820--101169047 Score: 298
Period size: 76 Copynumber: 3.0 Consensus size: 74
101168810 AAAATAGAAA
* * * *
101168820 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTAAAAATACCTCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATAT
*
101168885 GAGTT-A-ATTT
63 GAGTTGATTTTT
* * * * *
101168895 TTGACAAACAGAAATTGAAATTACCTCAGCGTATCCCGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGA
101168960 GTTGATTTTT
65 GTTGATTTTT
101168970 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATG
101169035 AGTTGATTTTT
64 AGTTGATTTTT
101169046 TT
1 TT
101169048 TTACGAACAG
Statistics
Matches: 133, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
73 33 0.25
74 1 0.01
75 43 0.32
76 56 0.42
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.29
Consensus pattern (74 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:101169071 original size:14 final size:14
Alignment explanation
Indices: 101169052--101169079 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
101169042 TTTTTTTTAC
101169052 GAACAGAAATTGAA
1 GAACAGAAATTGAA
101169066 GAACAGAAATTGAA
1 GAACAGAAATTGAA
101169080 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:101169085 original size:241 final size:242
Alignment explanation
Indices: 101168771--101169293 Score: 763
Period size: 241 Copynumber: 2.1 Consensus size: 242
101168761 TGTGAACCCA
* *
101168771 AGGCTCAACTCACATCTCGCAATATGAGTTGA---TTTTTGAAAAATAGAAATTGAAAAGCAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAAAGCAGAA
101168833 ATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTG
66 ATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTG
*
101168898 ACAAACAGAAATTGAAATTACCTCAGCGTATCCCGAGGCTCAACTCACCTTTCGCAATATGAGTT
131 ACAAACAGAAATTGAAATTACCTCAGCGTATCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
101168963 GATTTTTTTGAAAAAC-AG-A-AATTTAAAAATACCTCAGCGTGTCCTG
196 GA--TTTTTGAAAAACAAGCAGAAATTAAAAATACCTCAACGGGTCCTG
* **
101169009 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGAA-CAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAA-AAGCAGA
* *
101169073 AATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
65 AATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTT
* *
101169138 GACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGT
130 GACAAACAGAAATTGAAATTACCTCAGCGTATCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
101169203 TGATTTTTGAAAAACAAAAATTGAGCAGAAATTGAAAATACCTCAACGGGTCTTG
195 TGATTTTTGAAAAAC----A---AGCAGAAATTAAAAATACCTCAACGGGTCCTG
*
101169258 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
101169294 CTTAAAAATA
Statistics
Matches: 255, Mismatches: 16, Indels: 17
0.89 0.06 0.06
Matches are distributed among these distances:
238 31 0.12
239 12 0.05
241 150 0.59
242 2 0.01
247 2 0.01
248 1 0.00
249 57 0.22
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (242 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAAAGCAGAA
ATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTG
ACAAACAGAAATTGAAATTACCTCAGCGTATCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAAGCAGAAATTAAAAATACCTCAACGGGTCCTG
Found at i:101169126 original size:92 final size:91
Alignment explanation
Indices: 101168970--101169137 Score: 250
Period size: 92 Copynumber: 1.8 Consensus size: 91
101168960 GTTGATTTTT
* *
101168970 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
*
101169035 AGTTGATTTTTTTTTACGAACAGAAA
66 AGTTAATTTTTTTTTACGAACAGAAA
* *
101169061 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
101169124 ATGAGTTAATTTTT
63 ATGAGTTAATTTTT
101169138 GACAAACAGA
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
90 14 0.20
91 13 0.19
92 40 0.58
93 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (91 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTTTTTACGAACAGAAA
Done.