Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 312 of 343
Found at i:101169192 original size:73 final size:71
Alignment explanation
Indices: 101169067--101169422 Score: 281
Period size: 84 Copynumber: 5.0 Consensus size: 71
101169057 GAAATTGAAG
* ** *
101169067 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
101169132 ATTTTTGACA
64 A-TTTT-ACA
* *
101169142 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
101169207 TTTTGAAAAACAAAA
65 TTTT-----AC---A
* * ** *
101169222 ATTGAGCAGAAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGT
1 A---A-CAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
101169287 TGATTTT---
62 TGATTTTACA
* * * * *
101169294 --C-----TTAAAAATACCTCAGCGCGTCCTGAGGCTCAGCTCACCTCTCGCAACATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
101169351 ---ACA
66 TTTACA
* * *
101169354 TACAGAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
1 AACAG-AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
101169419 TTTT
65 TTTT
101169423 GAAAAAGTAG
Statistics
Matches: 227, Mismatches: 28, Indels: 55
0.73 0.09 0.18
Matches are distributed among these distances:
61 49 0.22
62 1 0.00
66 1 0.00
68 49 0.22
73 41 0.18
75 22 0.10
77 2 0.01
80 2 0.01
83 5 0.02
84 55 0.24
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (71 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTACA
Found at i:101169200 original size:165 final size:166
Alignment explanation
Indices: 101168901--101169290 Score: 494
Period size: 165 Copynumber: 2.4 Consensus size: 166
101168891 ATTTTTGACA
** *
101168901 AACAGAAATTGAAATTACCTCAGCGTATCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCGTATCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
101168966 TTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
66 ATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
101169031 TATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
131 TATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
*
101169067 AACAGAAATTGAAAAGACCTCAGCATGTGA-GCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAAGACCTCAGC--GT-ATCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
101169131 -A-ATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG
63 GATATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG
* * ** *
101169193 TAATATGAGTTGA---TTTTTGAAAAACAAAAATTG-AG
128 CAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
* * ** ** *
101169228 --CAGAAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCGTATCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
101169291 TTTCTTAAAA
Statistics
Matches: 196, Mismatches: 22, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
157 31 0.16
158 1 0.01
159 20 0.10
161 2 0.01
162 16 0.08
165 52 0.27
166 38 0.19
167 1 0.01
168 34 0.17
169 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (166 bp):
AACAGAAATTGAAAAGACCTCAGCGTATCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
ATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
Found at i:101169332 original size:61 final size:62
Alignment explanation
Indices: 101169237--101169422 Score: 185
Period size: 68 Copynumber: 2.9 Consensus size: 62
101169227 GCAGAAATTG
* * * *
101169237 AAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTC-TTA
1 AAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCATTA
* * ** *
101169298 AAAATACCTCAGCGCGTCCTGAGGCTCAGCTCACCTCTCGCAACATGAGTTGAACATACAGAAAA
1 AAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTC-----A
*
101169363 TTG
60 TTA
* * * *
101169366 ACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
101169423 GAAAAAGTAG
Statistics
Matches: 99, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
61 46 0.46
62 3 0.03
67 2 0.02
68 48 0.48
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.26
Consensus pattern (62 bp):
AAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCATTA
Found at i:101169491 original size:54 final size:54
Alignment explanation
Indices: 101169391--101169496 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
101169381 GTCCCGAGGC
* *
101169391 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGAAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
101169445 TCAACCCACCTCTCGAAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGAAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
101169497 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGAAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:101169612 original size:140 final size:140
Alignment explanation
Indices: 101169355--101169832 Score: 843
Period size: 140 Copynumber: 3.4 Consensus size: 140
101169345 AGTTGAACAT
* * *
101169355 ACAGAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 ACAG-AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
101169420 TTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGAAATATGAGTTGATTCTTGAACAAC
65 TTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAAC
101169485 GTAAATTGAAA
130 GTAAATTGAAA
101169496 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
* *
101169561 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATACGAGTTGATTCTTGAATAACG
66 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
101169626 TAAATTGAAA
131 TAAATTGAAA
* * * *
101169636 AAAAAAATTGAAAATAACTCAGCGTGACCTGAGGCTAAACTCACCTCTCGCAATATGAGCTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
101169701 TTGAAAAAGTAGAAATTAAAAGGTTCAA-CCACCTCTCGCAATATGAGTTGATT-TTGAACAACG
66 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
101169764 TAAATTGAAA
131 TAAATTGAAA
101169774 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
101169833 TTGAAATTAA
Statistics
Matches: 321, Mismatches: 16, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
138 74 0.23
139 24 0.07
140 219 0.68
141 4 0.01
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (140 bp):
ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
TAAATTGAAA
Found at i:101169631 original size:54 final size:54
Alignment explanation
Indices: 101169531--101169636 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
101169521 GACCTGAGGC
* *
101169531 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATACGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
101169585 TCAACCCACCTCTCGCAATACGAGTTGATTCTTGAATAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATACGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
101169637 AAAAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATACGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:101169914 original size:278 final size:274
Alignment explanation
Indices: 101169178--101169927 Score: 764
Period size: 278 Copynumber: 2.7 Consensus size: 274
101169168 GTCCCGAGGC
* * ** *
101169178 TCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAAAAATTG--AGCAGAAATTGAAAA
1 TCAAC-CACCTCTCGAAATATGAGTTGA-TTTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
* * * * * **
101169241 TACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTG-ATT---TTC----TTA
64 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAAAACAAAATT-
* * * ** * * *
101169298 AAAATACCTCAGCGCGT-CCTGAGGCTCAGCTCACCTCTCGCAACATGAGTTGA-ACATACAGAA
128 AAAATACCTCA--GCGTACCCGAGGCTCAGCTCACCTCTAGCAATATGAGTTGATTGAAAAAAAA
* * * *
101169361 AATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAA
191 AATTGAAAATAACTCAGCGTGACCCGAGGCTAAACTCACCTCTCGCAATATGAGCTGATTTTGAA
101169426 AAAGTAGAAATTAAAAGGT
256 AAAGTAGAAATTAAAAGGT
101169445 TCAACCCACCTCTCGAAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
1 TCAA-CCACCTCTCGAAATATGAGTTGATT-TTGAACAACGTAAATTGAAAACAGAAATTGAAAA
* * *
101169510 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAA
64 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATT-AAAAA-CA-AA
*** * ** ** * * * * **
101169575 ATTAAAA-GGTTCAACCCACCTC-TCGCAATACGAGTTGA-TTCTTG-AATA--ACGTAAATTGA
125 ATTAAAATACCTCAGCGTACC-CGAGGC--T-C-AGCTCACCTCTAGCAATATGA-GTTGATTGA
*
101169634 AAAAAAAAATTGAAAATAACTCAGCGTGACCTGAGGCTAAACTCACCTCTCGCAATATGAGCTGA
184 AAAAAAAAATTGAAAATAACTCAGCGTGACCCGAGGCTAAACTCACCTCTCGCAATATGAGCTGA
101169699 TTTTGAAAAAGTAGAAATTAAAAGGT
249 TTTTGAAAAAGTAGAAATTAAAAGGT
*
101169725 TCAACCACCTCTCGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATA
1 TCAACCACCTCTCGAAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATA
*
101169790 CCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAACACAAAATTGA
66 CCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-AATTAAAAACAAAATT-A
*
101169855 AAATACCTCAGCGTACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAA
129 AAATACCTCAGCGTACCCGAGGCTCAGCTCACCTCTAGCAATATGAGTTGA--TTGAAAAA-AAA
101169920 AATT-AAAA
191 AATTGAAAA
101169928 GGCTTAACTC
Statistics
Matches: 387, Mismatches: 61, Indels: 59
0.76 0.12 0.12
Matches are distributed among these distances:
266 2 0.01
267 39 0.10
268 1 0.00
269 56 0.14
271 2 0.01
273 3 0.01
274 5 0.01
275 10 0.03
276 9 0.02
277 15 0.04
278 100 0.26
279 38 0.10
280 96 0.25
281 7 0.02
282 4 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (274 bp):
TCAACCACCTCTCGAAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATA
CCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAAAACAAAATTAAA
ATACCTCAGCGTACCCGAGGCTCAGCTCACCTCTAGCAATATGAGTTGATTGAAAAAAAAAATTG
AAAATAACTCAGCGTGACCCGAGGCTAAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGT
AGAAATTAAAAGGT
Found at i:101169919 original size:70 final size:70
Alignment explanation
Indices: 101169765--101169920 Score: 224
Period size: 69 Copynumber: 2.2 Consensus size: 70
101169755 TGAACAACGT
* * * *
101169765 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAA-ATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
101169830 GAGTTG
65 GAGTTG
*
101169836 AAATTAAACACAAAATTGAAAATACCTCAGCGT-ACCCGAGGCTCAACTCACCTCTAGCAATATG
1 AAATTAAAAACAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATG
101169900 AGTTG
66 AGTTG
**
101169905 ATTTTGAAAAACAAAA
1 AAATT-AAAAACAAAA
101169921 ATTAAAAGGC
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
69 37 0.49
70 28 0.37
71 11 0.14
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.22
Consensus pattern (70 bp):
AAATTAAAAACAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATG
AGTTG
Found at i:101169974 original size:53 final size:53
Alignment explanation
Indices: 101169874--101169975 Score: 127
Period size: 53 Copynumber: 1.9 Consensus size: 53
101169864 AGCGTACCCG
* * *
101169874 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
1 AGGCTCAACTCACCTCTAGCAATATGAGTTCAATTTGAAAAAAAAAAATTAAA
* *
101169927 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAAAAAT
1 AGGCTCAACTCACCTCTAGCAATATGAGTTCAATTTGAAAA-A-AAAAAAT
101169976 ACCTCAGCGT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
51 4 0.10
52 6 0.14
53 32 0.76
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.26
Consensus pattern (53 bp):
AGGCTCAACTCACCTCTAGCAATATGAGTTCAATTTGAAAAAAAAAAATTAAA
Found at i:101170025 original size:118 final size:119
Alignment explanation
Indices: 101169805--101170044 Score: 360
Period size: 118 Copynumber: 2.0 Consensus size: 119
101169795 GCGTGACCTG
*
101169805 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAACACAAAATTGAAAATACCTCAGCGTA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAAATTAAACACAAAA-T-AAAATACCTCAGCGTA
101169870 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
64 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * *
101169927 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAA-ACATAA-AAAATACCTCAGCGTGCC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAAATTAAACACAAAATAAAATACCTCAGCGT-AC
* *
101169989 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
65 CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
101170044 A
1 A
101170045 ATACCTCAAC
Statistics
Matches: 110, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
117 31 0.28
118 39 0.35
120 5 0.05
121 8 0.07
122 27 0.25
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.25
Consensus pattern (119 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTCAAATTAAACACAAAATAAAATACCTCAGCGTACC
CGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:101170038 original size:65 final size:66
Alignment explanation
Indices: 101169927--101170097 Score: 186
Period size: 71 Copynumber: 2.5 Consensus size: 66
101169917 AAAAATTAAA
* * * * *
101169927 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAAC-ATAAAAAATACCTCAGCGTGCCC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAT-AAAAATACCTCAACGTGCCC
101169990 CG
65 CG
101169992 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAAC---AA-TAAAAATACCTCAACGT
* **
101170057 GTCTTG
61 GCCCCG
101170063 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
101170098 CCTTGAAAAG
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
65 26 0.29
66 5 0.06
67 5 0.06
70 1 0.01
71 52 0.58
72 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (66 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAATAAAAATACCTCAACGTGCCCC
G
Found at i:101179927 original size:16 final size:15
Alignment explanation
Indices: 101179906--101179953 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
101179896 GATGTGAATA
101179906 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
101179922 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
101179937 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
101179953 A
1 A
101179954 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:101179936 original size:8 final size:8
Alignment explanation
Indices: 101179902--101179953 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
101179892 CAATGATGTG
*
101179902 AATAATAA
1 AATATTAA
101179910 AATATATAA
1 AATAT-TAA
101179919 AATA-TAA
1 AATATTAA
101179926 AATATTAA
1 AATATTAA
*
101179934 AATATCAA
1 AATATTAA
*
101179942 AATATTAG
1 AATATTAA
101179950 AATA
1 AATA
101179954 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:101179953 original size:24 final size:24
Alignment explanation
Indices: 101179901--101179957 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
101179891 ACAATGATGT
*
101179901 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
101179925 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
101179949 GAATAATAA
1 GAATAATAA
101179958 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:101180131 original size:25 final size:23
Alignment explanation
Indices: 101180103--101180165 Score: 76
Period size: 22 Copynumber: 2.7 Consensus size: 23
101180093 CGTGATAATA
101180103 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATA--TACATAATATAGTG
101180128 TTAAAAATATACATAATATA--G
1 TTAAAAATATACATAATATAGTG
*
101180149 TTAAGATATATACATAA
1 TTAA-AAATATACATAA
101180166 GATAACATGT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 5 0.14
22 11 0.31
23 11 0.31
25 9 0.25
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (23 bp):
TTAAAAATATACATAATATAGTG
Found at i:101180240 original size:24 final size:24
Alignment explanation
Indices: 101180186--101180243 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
101180176 AGAAAAAAAT
* *
101180186 ATATATATAAATAATATAATATTAA
1 ATATATAT-AATAAAATAATATAAA
* *
101180211 AGATATATAATAAAATAGTATAAA
1 ATATATATAATAAAATAATATAAA
101180235 ATATATATA
1 ATATATATA
101180244 TACGTAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (24 bp):
ATATATATAATAAAATAATATAAA
Found at i:101180296 original size:20 final size:20
Alignment explanation
Indices: 101180271--101180315 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
101180261 AAAATATACC
*
101180271 TAATATATTA-AAAGAATATA
1 TAATATAATATAAAGAA-ATA
*
101180291 TAATATAATATTAAGAAATA
1 TAATATAATATAAAGAAATA
101180311 TAATA
1 TAATA
101180316 ATAACAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
TAATATAATATAAAGAAATA
Found at i:101180304 original size:23 final size:23
Alignment explanation
Indices: 101180190--101180318 Score: 65
Period size: 23 Copynumber: 5.5 Consensus size: 23
101180180 AAAAATATAT
*
101180190 ATATAAATAATATAATATTAAAGAT
1 ATAT-AATAATATAATATTAAA-AA
* *
101180215 ATATAATAAAATAGTA-TAAAATA
1 ATATAATAATATAATATTAAAA-A
*
101180238 TATATATACGTAATATAGA-ATT-TAAA
1 -ATATA-A--TAATATA-ATATTAAAAA
*
101180264 ATATACCT-A-AT-ATATTAAAAGA
1 ATATA-ATAATATAATATTAAAA-A
*
101180286 ATAT-ATAATATAATATTAAGAA
1 ATATAATAATATAATATTAAAAA
101180308 ATATAATAATA
1 ATATAATAATA
101180319 ACAAAAAAGA
Statistics
Matches: 79, Mismatches: 11, Indels: 30
0.66 0.09 0.25
Matches are distributed among these distances:
19 1 0.01
20 4 0.05
21 5 0.06
22 14 0.18
23 19 0.24
24 15 0.19
25 10 0.13
26 1 0.01
27 9 0.11
28 1 0.01
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (23 bp):
ATATAATAATATAATATTAAAAA
Found at i:101180871 original size:30 final size:30
Alignment explanation
Indices: 101180839--101180937 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
101180829 TGGAGCAAGT
* * *
101180839 GTGGCTAGTGGATTTGGTTGTGGAAAAGGT
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
*
101180869 GTGGCTAGTGGAGTTGGTGGTGGAAAAAGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
101180899 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
101180929 GTGGCTAGT
1 GTGGCTAGT
101180938 TGAGAAAAGT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.22, C:0.04, G:0.46, T:0.27
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
Found at i:101180903 original size:60 final size:60
Alignment explanation
Indices: 101180793--101180937 Score: 175
Period size: 60 Copynumber: 2.4 Consensus size: 60
101180783 TAGGTACAAG
* * ** * *
101180793 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGTAGGTAATGGAAAAAGAGTGGCTAGTGGAGT
* * **
101180853 TGGTTGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTAGGTAATGGAAAAAGAGTGGCTAGTGGAGT
*
101180913 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
101180938 TGAGAAAAGT
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
59 2 0.03
60 70 0.97
ACGTcount: A:0.23, C:0.04, G:0.46, T:0.27
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTAGGTAATGGAAAAAGAGTGGCTAGTGGAGT
Found at i:101182506 original size:51 final size:51
Alignment explanation
Indices: 101182444--101182543 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
101182434 GCATGAGCTG
* *
101182444 TTATTTCGCATGAAG-TGTTATTCAGTATGAACTGATATTTCATATGAACTA
1 TTATTTCGCATG-AGCTGTCATTCAGTAAGAACTGATATTTCATATGAACTA
* ** *
101182495 TTATTTTGCATGAGCTGTCATTTGGTAAGAACTGTTATTTCATATGAAC
1 TTATTTCGCATGAGCTGTCATTCAGTAAGAACTGATATTTCATATGAAC
101182544 AGACGTTTGG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (51 bp):
TTATTTCGCATGAGCTGTCATTCAGTAAGAACTGATATTTCATATGAACTA
Found at i:101182543 original size:17 final size:17
Alignment explanation
Indices: 101182436--101182543 Score: 74
Period size: 17 Copynumber: 6.4 Consensus size: 17
101182426 ATGATGAAGC
* **
101182436 ATGAGCTGTTATTTCGC
1 ATGAACTGTTATTTCAT
*
101182453 ATGAAGTGTTA-TTCAGT
1 ATGAACTGTTATTTCA-T
*
101182470 ATGAACTGATATTTCAT
1 ATGAACTGTTATTTCAT
* ***
101182487 ATGAACTATTATTTTGC
1 ATGAACTGTTATTTCAT
* * **
101182504 ATGAGCTGTCATTTGGT
1 ATGAACTGTTATTTCAT
*
101182521 AAGAACTGTTATTTCAT
1 ATGAACTGTTATTTCAT
101182538 ATGAAC
1 ATGAAC
101182544 AGACGTTTGG
Statistics
Matches: 67, Mismatches: 22, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
16 3 0.04
17 60 0.90
18 4 0.06
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.41
Consensus pattern (17 bp):
ATGAACTGTTATTTCAT
Found at i:101187371 original size:24 final size:25
Alignment explanation
Indices: 101187338--101187384 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
101187328 TTTTTTTATC
101187338 AAAATAATATAAAAATTA-ATTACG
1 AAAATAATATAAAAATTAGATTACG
* *
101187362 AAAATTATATAAAATTTAGATTA
1 AAAATAATATAAAAATTAGATTA
101187385 TTTATGGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (25 bp):
AAAATAATATAAAAATTAGATTACG
Found at i:101191823 original size:23 final size:24
Alignment explanation
Indices: 101191796--101191841 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
101191786 ATAAAAGCTA
101191796 AACCC-CAAAACCTAAAAACAAAG
1 AACCCTCAAAACCTAAAAACAAAG
* *
101191819 AACCCTCAAAACGTAAACACAAA
1 AACCCTCAAAACCTAAAAACAAA
101191842 ATTCTATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.59, C:0.30, G:0.04, T:0.07
Consensus pattern (24 bp):
AACCCTCAAAACCTAAAAACAAAG
Found at i:101195022 original size:38 final size:38
Alignment explanation
Indices: 101194980--101195055 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
101194970 TTTCCCGAAC
*
101194980 TTAGTAAAAGATAATAACTGGAACGGTTCAAGGTCAGG
1 TTAGTAAAAGATAATAACAGGAACGGTTCAAGGTCAGG
101195018 TTAGTAAAAGATAATAACAGGAACGGTTCAAGGTCAGG
1 TTAGTAAAAGATAATAACAGGAACGGTTCAAGGTCAGG
101195056 GCATTTTCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.26, T:0.22
Consensus pattern (38 bp):
TTAGTAAAAGATAATAACAGGAACGGTTCAAGGTCAGG
Found at i:101201672 original size:25 final size:25
Alignment explanation
Indices: 101201638--101201686 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
101201628 ATAATCATAC
101201638 CATATGAACTTACCTAGTAAAATAT
1 CATATGAACTTACCTAGTAAAATAT
*
101201663 CATATGAACTTACCTAGTTAAATA
1 CATATGAACTTACCTAGTAAAATA
101201687 AGCAAACAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (25 bp):
CATATGAACTTACCTAGTAAAATAT
Found at i:101218195 original size:78 final size:78
Alignment explanation
Indices: 101218082--101218375 Score: 455
Period size: 78 Copynumber: 3.8 Consensus size: 78
101218072 GAAGAAACAT
* * *
101218082 ATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
101218147 CAGATCCAAGATG
66 CAGATCCAAGATG
* * *
101218160 ATTTGGCATCTCTGTATTAGACGGGGCGCAAATCGAAGACATAGCAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
* *
101218225 CAGATTCAAGATT
66 CAGATCCAAGATG
* * *
101218238 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTCATTGAA
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAA
101218302 GCAGATCCAAGATG
65 GCAGATCCAAGATG
* *
101218316 ATTTGCCATCTCTATATTAGACGGGGGGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
101218376 GTGTTTACAT
Statistics
Matches: 195, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
77 1 0.01
78 193 0.99
79 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (78 bp):
ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
CAGATCCAAGATG
Found at i:101218516 original size:44 final size:45
Alignment explanation
Indices: 101218389--101218534 Score: 186
Period size: 45 Copynumber: 3.3 Consensus size: 45
101218379 TTTACATCGA
** *
101218389 AGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * * * *
101218434 AGCAAATCGGAGATAACAAATTTGGCATCTCTGTATTAGACGGAG
1 AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
101218479 AGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGATGGGG
1 AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
101218523 AGCAGATTGAAG
1 AGCAGATTGAAG
101218535 CCGTCAAGAG
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
44 38 0.44
45 49 0.56
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (45 bp):
AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:101218946 original size:17 final size:19
Alignment explanation
Indices: 101218852--101218939 Score: 128
Period size: 19 Copynumber: 4.8 Consensus size: 19
101218842 ATCTTCAATA
101218852 ATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
*
101218871 ATATGCAACCTTAGATATG
1 ATATGCAATCTTAGATATG
101218890 ATA--CAATCTTAGATATG
1 ATATGCAATCTTAGATATG
* *
101218907 AT-TGCAAACTTAGATGTG
1 ATATGCAATCTTAGATATG
101218925 ATATGCAATCTTAGA
1 ATATGCAATCTTAGA
101218940 AGATATGATT
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
17 15 0.25
18 14 0.23
19 32 0.52
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (19 bp):
ATATGCAATCTTAGATATG
Found at i:101222169 original size:17 final size:18
Alignment explanation
Indices: 101222137--101222174 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
101222127 CTAAATACAG
101222137 AAATATTTTTAAAATA-A
1 AAATATTTTTAAAATATA
**
101222154 AAATATTTTTTTAATATA
1 AAATATTTTTAAAATATA
101222172 AAA
1 AAA
101222175 CACTCATGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATATTTTTAAAATATA
Found at i:101224281 original size:44 final size:45
Alignment explanation
Indices: 101224179--101224292 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 45
101224169 TACAAGGTTT
* * * * *
101224179 ACATATCATCCTAGTTGGGTTCGCACACAATATATAGGACGGATC
1 ACATAACATCCTAATAGGGTCCGCACACAACATATAGGACGGATC
* * *
101224224 ACATAACATCCTAATAGGGTCCGCTCACAACATATAGG-GGGCTC
1 ACATAACATCCTAATAGGGTCCGCACACAACATATAGGACGGATC
* * *
101224268 TCATAACATCCTAACAGGGTTCGCA
1 ACATAACATCCTAATAGGGTCCGCA
101224293 TGTACCAGGT
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
44 25 0.44
45 32 0.56
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (45 bp):
ACATAACATCCTAATAGGGTCCGCACACAACATATAGGACGGATC
Found at i:101224327 original size:24 final size:24
Alignment explanation
Indices: 101224300--101224480 Score: 192
Period size: 24 Copynumber: 7.7 Consensus size: 24
101224290 GCATGTACCA
**
101224300 GGTGATAAGGGTTCATACATGTCT
1 GGTGATAAGGGTTCGCACATGTCT
*
101224324 GGTGATAGGGGTTCGCACATGTCT
1 GGTGATAAGGGTTCGCACATGTCT
* *
101224348 AGTGA-CAGGGTTCGCACATGTCT
1 GGTGATAAGGGTTCGCACATGTCT
* *
101224371 GGTGATAGGGGTTTGCACATGTCT
1 GGTGATAAGGGTTCGCACATGTCT
* * **
101224395 -ATGATAGGGGTT-ATACATGTCT
1 GGTGATAAGGGTTCGCACATGTCT
*
101224417 AGTGAT-AGGTGTTCGCACATGTCT
1 GGTGATAAGG-GTTCGCACATGTCT
* *
101224441 GGTGATAAGGGTTCACGCATGTCT
1 GGTGATAAGGGTTCGCACATGTCT
101224465 GGTGAT-AGGGTTCGCA
1 GGTGATAAGGGTTCGCA
101224481 GTTATCACAC
Statistics
Matches: 130, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
22 10 0.08
23 46 0.35
24 71 0.55
25 3 0.02
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (24 bp):
GGTGATAAGGGTTCGCACATGTCT
Found at i:101224367 original size:47 final size:47
Alignment explanation
Indices: 101224301--101224480 Score: 222
Period size: 47 Copynumber: 3.8 Consensus size: 47
101224291 CATGTACCAG
*
101224301 GTGATAAGGGTTCATACATGTCTGGTGATAGGGGTTCGCACATGTCTA
1 GTGA-AAGGGTTCACACATGTCTGGTGATAGGGGTTCGCACATGTCTA
* * *
101224349 GTGACAGGGTTCGCACATGTCTGGTGATAGGGGTTTGCACATGTCTA
1 GTGAAAGGGTTCACACATGTCTGGTGATAGGGGTTCGCACATGTCTA
* * * * *
101224396 -TGATAGGGGTT-ATACATGTCTAGTGATAGGTGTTCGCACATGTCTG
1 GTGA-AAGGGTTCACACATGTCTGGTGATAGGGGTTCGCACATGTCTA
*
101224442 GTGATAAGGGTTCACGCATGTCTGGTGATA-GGGTTCGCA
1 GTGA-AAGGGTTCACACATGTCTGGTGATAGGGGTTCGCA
101224481 GTTATCACAC
Statistics
Matches: 112, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
46 32 0.29
47 62 0.55
48 18 0.16
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (47 bp):
GTGAAAGGGTTCACACATGTCTGGTGATAGGGGTTCGCACATGTCTA
Found at i:101224476 original size:70 final size:71
Alignment explanation
Indices: 101224300--101224474 Score: 246
Period size: 70 Copynumber: 2.5 Consensus size: 71
101224290 GCATGTACCA
* *
101224300 GGTGATAAGGGTTCATACATGTCTGGTGATAGGGGTTCGCACATGTCTAGTGACAGGGTTCGCAC
1 GGTGATAAGGGTTCACACATGTCTGGTGATAGGGGTTCACACATGTCTAGTGACAGGGTTCGCAC
101224365 ATGTCT
66 ATGTCT
* ** * * *
101224371 GGTGATAGGGGTTTGCACATGTCT-ATGATAGGGGTT-ATACATGTCTAGTGATAGGTGTTCGCA
1 GGTGATAAGGGTTCACACATGTCTGGTGATAGGGGTTCACACATGTCTAGTGACAGG-GTTCGCA
101224434 CATGTCT
65 CATGTCT
*
101224441 GGTGATAAGGGTTCACGCATGTCTGGTGATAGGG
1 GGTGATAAGGGTTCACACATGTCTGGTGATAGGG
101224475 TTCGCAGTTA
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 16 0.18
70 45 0.51
71 28 0.31
ACGTcount: A:0.21, C:0.14, G:0.34, T:0.31
Consensus pattern (71 bp):
GGTGATAAGGGTTCACACATGTCTGGTGATAGGGGTTCACACATGTCTAGTGACAGGGTTCGCAC
ATGTCT
Found at i:101228113 original size:6 final size:6
Alignment explanation
Indices: 101228104--101228183 Score: 142
Period size: 6 Copynumber: 13.3 Consensus size: 6
101228094 CTGATATGCA
* *
101228104 TATCTG TATCTA TATCTG TATCTA TATCTG TATCTG TATCTG TATCTG
1 TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG
101228152 TATCTG TATCTG TATCTG TATCTG TATCTG TA
1 TATCTG TATCTG TATCTG TATCTG TATCTG TA
101228184 AAGAGCTTCA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
TATCTG
Found at i:101235456 original size:39 final size:39
Alignment explanation
Indices: 101235366--101235514 Score: 203
Period size: 39 Copynumber: 3.8 Consensus size: 39
101235356 TTCCACTCCA
* * *
101235366 CCCATGCTACTTTGTTTTATTATTAATCAAAA-TCAC-TC
1 CCCATACTATTTTGTTTTATTATTAATTAAAACT-ACTTC
* *
101235404 CCCATGCTATTTTGTTTTATTGTTAATTAAAACTACTTC
1 CCCATACTATTTTGTTTTATTATTAATTAAAACTACTTC
*
101235443 CCCATACTATTTTGTTTTATTGTTAATTAAAACTACTTC
1 CCCATACTATTTTGTTTTATTATTAATTAAAACTACTTC
* *
101235482 CTCATACCATTTTGTTTTATTATTAATTAAAAC
1 CCCATACTATTTTGTTTTATTATTAATTAAAAC
101235515 CATACTTTAT
Statistics
Matches: 102, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
38 31 0.30
39 71 0.70
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.47
Consensus pattern (39 bp):
CCCATACTATTTTGTTTTATTATTAATTAAAACTACTTC
Found at i:101236811 original size:45 final size:45
Alignment explanation
Indices: 101236745--101236830 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
101236735 CGATATCTGC
* * *
101236745 TATCTTTGATCTGCCCTCCGTCTACTACAGAGATGCCAAATCTAT
1 TATCTTTGATATGCCCTCCGTCTAATACAGAGACGCCAAATCTAT
101236790 TATCTTTGATATGCTCC-CCGTCTAATACAGAGACGCCAAAT
1 TATCTTTGATATGC-CCTCCGTCTAATACAGAGACGCCAAAT
101236831 TTGCTTCTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 35 0.95
46 2 0.05
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (45 bp):
TATCTTTGATATGCCCTCCGTCTAATACAGAGACGCCAAATCTAT
Found at i:101237353 original size:210 final size:209
Alignment explanation
Indices: 101236928--101237686 Score: 1007
Period size: 210 Copynumber: 3.6 Consensus size: 209
101236918 CTGCTTCTTC
* * * * * * * *
101236928 GATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCACGTGA
1 GATTTGTTCTCTAACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACGTGA
* * * ** * **
101236993 AAGCCAAATCAACTATGA--TTCGATTTGCTCCTTGTAAGCATA-AG-GATGCCAA-A-C---CA
66 AAGCCAAATCAGCTAT-ATCTTCGATCTGCTCCCTG-CCGAATACAGAGA-GATAAGATCTGTCA
* * ** * * * *
101237049 TCTTGGATCCGCTTCAGTATAAACATCCGAAGGCAAGATCTGCTATGTGTCCG-CTCTCCACCAA
128 TCTTAGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCT-TCCATCAA
*
101237113 AGTGAAGATGCCAAACTTT
192 AGTGAA-ATGCCAGACTTT
*
101237132 GATTCGTTCTCTAACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACGTGA
1 GATTTGTTCTCTAACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACGTGA
*
101237197 AAGCCAAATCAGCTATATCTTCGATCTGTTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCT
66 AAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCT
* *
101237262 TAGATCTGCTTCAGCGTAAACATCTGAGGGTAAGATCTGCAATGTGTCTGCCTTCCATCAAAGTG
131 TAGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAAAGT-
101237327 GAAATGCCAGACTTT
195 GAAATGCCAGACTTT
*
101237342 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACGTGA
1 GATTTGTTCTCTAACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACGTGA
*
101237407 AAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATGCAGAGAGATAAGATCTGTCATCT
66 AAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCT
* * *
101237472 TGGATCTGTTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTATGCCTTCCATCAAAGTA
131 TAGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAAAGT-
*
101237537 GAAATGCCAGACTTC
195 GAAATGCCAGACTTT
* * *
101237552 GATTTGTTCTCTAACAATACAGAGACGACAAATCATCTCAGATTTGCTTCATCGTAAATACGTGA
1 GATTTGTTCTCTAACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACGTGA
* * **
101237617 AAGCCAAATCAACTATATCTTCGATATGCTCCCCACCGAATACAGAGAGATAAGATCTGTCATCT
66 AAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCT
101237682 TAGAT
131 TAGAT
101237687 TTGCCCCGAT
Statistics
Matches: 494, Mismatches: 50, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
203 1 0.00
204 75 0.15
205 18 0.04
206 3 0.01
207 1 0.00
210 391 0.79
211 5 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (209 bp):
GATTTGTTCTCTAACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACGTGA
AAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCT
TAGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAAAGTG
AAATGCCAGACTTT
Found at i:101245707 original size:13 final size:15
Alignment explanation
Indices: 101245677--101245707 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
101245667 TTCCAGATTT
101245677 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
101245692 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
101245707 T
1 T
101245708 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:101245793 original size:15 final size:14
Alignment explanation
Indices: 101245751--101245800 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
101245741 ATAACCTTGA
*
101245751 ATGCAAATGATGTG
1 ATGCAAATGATGAG
101245765 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
101245780 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
101245794 ATGCAAA
1 ATGCAAA
101245801 AAGAATATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:101255119 original size:412 final size:402
Alignment explanation
Indices: 101254284--101255439 Score: 1178
Period size: 412 Copynumber: 2.8 Consensus size: 402
101254274 CTTCATCAGG
* * * *
101254284 GCAGATCTAAGAT-ACAGATCTTATCTCTCTGT-TATCGGCGGGGAGCATATCGAAGATATAGTT
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTAT-TCGGCAGGGAGCAGATCGAAGATATAGCT
*
101254347 GATTTGGCTTTCACGTGTTTACGATG-AGCAAATCTAAGATGATTTGTCGTCTCTG-A-TGTCAG
65 GATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGT-GTCTCTGTATTGTCAG
* * * *
101254409 AGAACAAATCGAAGTTTGGCATCTTCACTTTGATGAGACAGACACATACAGATCTGACCTTCAGA
129 AGAACAAATCAAAGTCTGGCATCTCCACTTTGATGAGACAGACACATACAGATCTGACCATCAGA
* * * * *
101254474 TGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTGTGTTTATAAGGAACAAATCGAAGC
194 TGTTTACGCTGAAGCAGATCCAAGATGGTTT-G-ATCCTTGTATTGATAAGGAACAAATCAAAGC
* * * *
101254539 ATAGCTGATTGGCTTTCACGTGTTACGTTGAAACACATCTAAGATGTTTGTCTCTGTGTATTGTC
257 ATAGCTGATTGACTTTCACGTGTTACGATGAAACAAATCTAAGATGTTTGTCTCTCTGTATTGTC
* *
101254604 AGAGAACAAATCGAAGTCTGGCATTCCACTTTGATGGAAGGCAGACACATACCAGATCTACCTTC
322 AGAGAACAAATCGAAGCCTGGCATTCCACTTTGATGGAAGGCAGACACATACCAGATCTACCCTC
*
101254669 AGATGTTTACGCTGAA
387 AGATGTTTACACTGAA
* *
101254685 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAAGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
* *
101254750 ATTTGG-TTTCACGTGTTTACGTTGAAACACATCTAAGATGATTTGT-TCTCTGTATTGTCAGAG
66 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGTGTCTCTGTATTGTCAGAG
*
101254813 AACAAATCAAAGTCTGG-AT-TCCACTTTGATGGAAGGCAGACACATAGCAGAT-T-A-CATCAG
131 AACAAATCAAAGTCTGGCATCTCCACTTTGAT-G-AGACAGACACATA-CAGATCTGACCATCAG
*
101254873 ATGTGTTACGCTGAAGCAGAT-CAAGATGACAGATCTT-ATCTCTCTGTATTCGGT-AGGAAGCA
193 ATGT-TTACGCTGAAGCAGATCCAAGATG---G-T-TTGATC-CT-TGTATT-GATAAGGAA-CA
* * ** *
101254935 GATCAAAGATATAGCTGATTTGACTTTCACGTGTGTTTTGATGAAGCAAATCTAAGATGATTTGT
248 AATCAAAG-CATAGCTGA-TTGACTTTCAC--GTGTTACGATGAAACAAATCTAAGATG-TTTGT
101255000 CATCTCTGTATTGT-ACGAGAACAAAATCGAAGCCTGGCATTTCCAC-TTGATGGAAGGCAGACA
308 C-TCTCTGTATTGTCA-GAGAAC-AAATCGAAGCCTGGCA-TTCCACTTTGATGGAAGGCAGACA
*
101255063 CATAGCAGATCTTACCCTCAGATGTTT-CACTGAA
369 CATACCAGATC-TACCCTCAGATGTTTACACTGAA
* * *
101255097 GCAGATCCAAGATGGCAGATCTTATCTCTCTGTATTCGGCAGGGAACAGATC-AAGA-ATAACTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
* * *
101255160 ATTTGGCTTTCACGTGTTTTCATTGAAGCAAATCTAAGATGATTTGTGTCCCTGTATTGTCAGAG
66 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGTGTCTCTGTATTGTCAGAG
** * * * * *
101255225 AATGAATCAAATTTTGGCATCTTCACTTTGGTAGAGAGCA-ACACATAGCAGATGTCTTG-CCTT
131 AACAAATCAAAGTCTGGCATCTCCACTTTGAT-GAGA-CAGACACATA-CAGA--TC-TGACCAT
* * * * * * * * *
101255288 CGGATTTTTATGCTGAAGCGGATCCGAGATGGTTTGGCATCCTTATGCTT-ACAA-GAGCAAATC
190 CAGATGTTTACGCTGAAGCAGATCCAAGATGGTTT-G-ATCCTTGT-ATTGATAAGGAACAAATC
* * * ** * *
101255351 GAATCAT-GTTGATTTG-GGTTCACGTGCTTACG-TTAAAGCAAATCTAAGATGATTTGGCATCT
252 AAAGCATAGCTGA-TTGACTTTCACGTG-TTACGATGAAA-CAAATCTAAGATG-TTTGTC-TCT
*
101255413 CTGTATTGTCAGGGAACAAAATCGAAG
312 CTGTATTGTCAGAGAAC-AAATCGAAG
101255440 AAGCAGATTT
Statistics
Matches: 632, Mismatches: 75, Indels: 89
0.79 0.09 0.11
Matches are distributed among these distances:
400 32 0.05
401 48 0.08
402 108 0.17
403 9 0.01
404 11 0.02
405 11 0.02
406 8 0.01
407 16 0.03
408 50 0.08
409 28 0.04
410 27 0.04
411 59 0.09
412 132 0.21
413 40 0.06
414 16 0.03
415 6 0.01
416 3 0.00
417 15 0.02
418 13 0.02
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (402 bp):
GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGTGTCTCTGTATTGTCAGAG
AACAAATCAAAGTCTGGCATCTCCACTTTGATGAGACAGACACATACAGATCTGACCATCAGATG
TTTACGCTGAAGCAGATCCAAGATGGTTTGATCCTTGTATTGATAAGGAACAAATCAAAGCATAG
CTGATTGACTTTCACGTGTTACGATGAAACAAATCTAAGATGTTTGTCTCTCTGTATTGTCAGAG
AACAAATCGAAGCCTGGCATTCCACTTTGATGGAAGGCAGACACATACCAGATCTACCCTCAGAT
GTTTACACTGAA
Found at i:101256784 original size:22 final size:22
Alignment explanation
Indices: 101256741--101256785 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
101256731 TTTTTTTTTT
* *
101256741 GTTTTTTTTTTTAAAAAAAAAA
1 GTTTTTTTTATGAAAAAAAAAA
* *
101256763 GTTTTTTTTATGATAAAGAAAA
1 GTTTTTTTTATGAAAAAAAAAA
101256785 G
1 G
101256786 AAAAAAAAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (22 bp):
GTTTTTTTTATGAAAAAAAAAA
Found at i:101256877 original size:39 final size:39
Alignment explanation
Indices: 101256799--101256932 Score: 147
Period size: 39 Copynumber: 3.6 Consensus size: 39
101256789 AAAAAGTATG
* *
101256799 GTTTTAATTAATAAT-AAA-AAAAT-GTATGAGGAAGTTA
1 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAAG-TA
101256836 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAAGTA
1 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAAGTA
* * *
101256875 GTTTTATTTAACAACAAAACAAAATAGCAT-GGG-AGT-
1 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAAGTA
* *
101256911 GTTTTGATTAA-TATAAAACAAA
1 GTTTTAATTAACAATAAAACAAA
101256933 GTAGCATAGG
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
35 9 0.11
36 9 0.11
37 17 0.20
38 6 0.07
39 34 0.40
40 10 0.12
ACGTcount: A:0.48, C:0.05, G:0.16, T:0.31
Consensus pattern (39 bp):
GTTTTAATTAACAATAAAACAAAATAGTATGGGGAAGTA
Found at i:101259149 original size:26 final size:24
Alignment explanation
Indices: 101259103--101259156 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
101259093 GAAATATACG
* *
101259103 ATATATAATATTGAAGGTAATACATA
1 ATATATAATATAGAAGATAAT-CA-A
101259129 ATATATACATATAGAA-ATAATCAA
1 ATATATA-ATATAGAAGATAATCAA
101259153 ATAT
1 ATAT
101259157 TGAAAAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
24 5 0.20
25 2 0.08
26 11 0.44
27 7 0.28
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.33
Consensus pattern (24 bp):
ATATATAATATAGAAGATAATCAA
Found at i:101259343 original size:24 final size:24
Alignment explanation
Indices: 101259315--101259381 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
101259305 TATTAAAGAT
101259315 ATATATATATAAAATGTATACATA
1 ATATATATATAAAATGTATACATA
* * *
101259339 ATATA-ATATTAAAATATTTACATG
1 ATATATATA-TAAAATGTATACATA
* *
101259363 GTATATACATAATAATGTA
1 ATATATATATAA-AATGTA
101259382 AAAAATAAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
23 3 0.09
24 24 0.73
25 6 0.18
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (24 bp):
ATATATATATAAAATGTATACATA
Found at i:101259925 original size:38 final size:39
Alignment explanation
Indices: 101259865--101259979 Score: 173
Period size: 38 Copynumber: 3.0 Consensus size: 39
101259855 ATTCCACTCC
*
101259865 CCCCATGCTATTTTGTTTTATTGTTAATTAAAACTACTT
1 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
101259904 CCCCATACTA-TTTGTTTTATTGTTAATTAAAACTACTT
1 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
* *
101259942 CCTCATACCATTTTGTTTTA-T-TTAATTAAAAACTACTT
1 CCCCATACTATTTTGTTTTATTGTTAATT-AAAACTACTT
101259980 TATTTTCTTT
Statistics
Matches: 71, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
37 6 0.08
38 47 0.66
39 18 0.25
ACGTcount: A:0.29, C:0.18, G:0.05, T:0.48
Consensus pattern (39 bp):
CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
Found at i:101260010 original size:19 final size:18
Alignment explanation
Indices: 101259986--101260023 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
101259976 ACTTTATTTT
*
101259986 CTTTTTTATATAAAAAAAA
1 CTTTTTTA-AAAAAAAAAA
101260005 CTTTTTTAAAAAAAAAAA
1 CTTTTTTAAAAAAAAAAA
101260023 C
1 C
101260024 AAAAAAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
CTTTTTTAAAAAAAAAAA
Found at i:101262541 original size:18 final size:18
Alignment explanation
Indices: 101262507--101262551 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 18
101262497 TTATGTTACA
*
101262507 AAATACAAAAATATTTTT
1 AAATATAAAAATATTTTT
101262525 AAA-ATAAAAATATTTTT
1 AAATATAAAAATATTTTT
101262542 AAATATAAAA
1 AAATATAAAA
101262552 CACTCATGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.64
18 9 0.36
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATATAAAAATATTTTT
Found at i:101264749 original size:30 final size:30
Alignment explanation
Indices: 101264713--101264811 Score: 180
Period size: 30 Copynumber: 3.3 Consensus size: 30
101264703 CTAGTCTTTG
101264713 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
101264743 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
101264773 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
101264803 CCACCACCA
1 CCACCACCA
101264812 CTTGTACCTA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:101265317 original size:25 final size:25
Alignment explanation
Indices: 101265280--101265449 Score: 120
Period size: 25 Copynumber: 7.0 Consensus size: 25
101265270 ATTCTTTTAA
* * *
101265280 TATATTAGGTATAT-T-TTAAATTC
1 TATATTATGTATATATATTTAATAC
* *
101265303 TATATTACGTATATATATTTTTATAC
1 TATATTATGTATATATA-TTTAATAC
* *
101265329 TATTTTATGTATATATCTTTAATAC
1 TATATTATGTATATATATTTAATAC
* **
101265354 TATATTATTTATATATATTCTACATGT
1 TATATTATGTATATATATT-TA-ATAC
*
101265381 TATCTTATG--TATAT-TTT-A-AC
1 TATATTATGTATATATATTTAATAC
* * *
101265401 TATATTATGTATGTATTTTTAACAC
1 TATATTATGTATATATATTTAATAC
* *
101265426 TATATTATGTACATATTTTTAATA
1 TATATTATGTATATATATTTAATA
101265450 TTATCACGTA
Statistics
Matches: 115, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
20 8 0.07
21 1 0.01
22 4 0.03
23 17 0.15
24 4 0.03
25 51 0.44
26 21 0.18
27 9 0.08
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (25 bp):
TATATTATGTATATATATTTAATAC
Found at i:101265470 original size:72 final size:74
Alignment explanation
Indices: 101265308--101265472 Score: 176
Period size: 72 Copynumber: 2.3 Consensus size: 74
101265298 AATTCTATAT
* * * *
101265308 TACGTATATATATTTTTATACTATTTTATGTATATATCTTTAATACTATATTATTTATATATATT
1 TACGTATATAT-TTTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATATT
*
101265373 CTACATGTTA
65 CTACATATTA
* * * * * *
101265383 T-CTTATGTATATTTTA-ACTATATTATGTATGTATTTTTAACACTATATTATGTACATAT-TTT
1 TACGTATATATTTTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATATTC
101265445 TA-ATATTA
66 TACATATTA
*
101265453 TCACGTATTTATTTTTTATA
1 T-ACGTATATATTTTTTATA
101265473 TATGTACATG
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
70 6 0.08
71 4 0.05
72 49 0.67
73 6 0.08
74 7 0.10
75 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.55
Consensus pattern (74 bp):
TACGTATATATTTTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATATTC
TACATATTA
Found at i:101265622 original size:16 final size:15
Alignment explanation
Indices: 101265598--101265645 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
101265588 TAATTATTAT
*
101265598 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
101265614 TATTTTAATATTTTA
1 TATTTTAATATTTTA
101265629 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
101265645 T
1 T
101265646 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:101265633 original size:7 final size:8
Alignment explanation
Indices: 101265598--101265649 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
101265588 TAATTATTAT
*
101265598 TATTCTAA
1 TATTTTAA
*
101265606 TATTTTGA
1 TATTTTAA
101265614 TATTTTAA
1 TATTTTAA
101265622 TATTTT-A
1 TATTTTAA
101265629 TATTTTATA
1 TATTTTA-A
*
101265638 TATTTTAT
1 TATTTTAA
101265646 TATT
1 TATT
101265650 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:101272492 original size:73 final size:73
Alignment explanation
Indices: 101272298--101272635 Score: 450
Period size: 73 Copynumber: 4.6 Consensus size: 73
101272288 TGATATTTTT
* * * ** *
101272298 ATTTCTATTT-TCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
*
101272362 TAACTTT-T
66 TAA-TTTCA
* * ** *
101272370 ATTTCTATTT-TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
101272434 TAATTTCA
66 TAATTTCA
* * *
101272442 ATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
101272507 TAATTTCA
66 TAATTTCA
* * *
101272515 ATTTCTGTTTGTCAAAACTCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
101272580 TAATTTCA
66 TAATTTCA
*
101272588 ATTTCTG-TTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAG
1 ATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
101272636 TCCCGGGCCA
Statistics
Matches: 245, Mismatches: 17, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
71 3 0.01
72 79 0.32
73 132 0.54
74 31 0.13
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (73 bp):
ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTCA
Found at i:101272688 original size:14 final size:14
Alignment explanation
Indices: 101272666--101272705 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
101272656 TCTTTTCAAA
*
101272666 TTCTG-TTTTTAGT
1 TTCTGTTTTTTAAT
101272679 TTCTGTTTTTTAAT
1 TTCTGTTTTTTAAT
*
101272693 TTCTGTGTTTTAA
1 TTCTGTTTTTTAA
101272706 AAAAAATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 5 0.21
14 19 0.79
ACGTcount: A:0.12, C:0.07, G:0.12, T:0.68
Consensus pattern (14 bp):
TTCTGTTTTTTAAT
Found at i:101273497 original size:30 final size:29
Alignment explanation
Indices: 101273461--101273559 Score: 135
Period size: 30 Copynumber: 3.3 Consensus size: 29
101273451 CTAGCCTTTG
*
101273461 CCACCACCAACTCTACTAGTCACACTTGCT
1 CCACCACCAACTCCACTAG-CACACTTGCT
101273491 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAG-CACACTTGCT
* * *
101273521 CCACTACCTACACCACTAGCTACACTTGCT
1 CCACCACCAACTCCACTAGC-ACACTTGCT
101273551 CCACCACCA
1 CCACCACCA
101273560 CTTGTACCTA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
29 1 0.02
30 60 0.98
ACGTcount: A:0.27, C:0.47, G:0.06, T:0.19
Consensus pattern (29 bp):
CCACCACCAACTCCACTAGCACACTTGCT
Found at i:101274212 original size:25 final size:25
Alignment explanation
Indices: 101274062--101274212 Score: 119
Period size: 25 Copynumber: 5.9 Consensus size: 25
101274052 ATTTTAAATT
* * *
101274062 CTATATTACGTATATATATTTTCTATA
1 CTATATTATGTATATAT-TTTT-AACA
* *
101274089 CTATTTTATGTATATATCTTTAACA
1 CTATATTATGTATATATTTTTAACA
* * *
101274114 CTATATTATTTATATTTTTTTTCTACA
1 CTATATTATGTATA-TATTTTT-AACA
* *
101274141 TGTTATCTTATGTATATA-TTTT-A-A
1 --CTATATTATGTATATATTTTTAACA
*
101274165 CTATATTATGTATGTATTTTTAACA
1 CTATATTATGTATATATTTTTAACA
*
101274190 CTATATTATGTACATATTTTTAA
1 CTATATTATGTATATATTTTTAA
101274213 TATTATCACG
Statistics
Matches: 98, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
22 13 0.13
23 4 0.04
24 2 0.02
25 37 0.38
26 8 0.08
27 22 0.22
28 1 0.01
29 11 0.11
ACGTcount: A:0.31, C:0.09, G:0.05, T:0.55
Consensus pattern (25 bp):
CTATATTATGTATATATTTTTAACA
Found at i:101274388 original size:16 final size:15
Alignment explanation
Indices: 101274364--101274411 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
101274354 TAATTATTAT
*
101274364 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
101274380 TATTTTAATATTTTA
1 TATTTTAATATTTTA
101274395 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
101274411 T
1 T
101274412 TATTCACATT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:101274399 original size:7 final size:8
Alignment explanation
Indices: 101274364--101274415 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
101274354 TAATTATTAT
*
101274364 TATTCTAA
1 TATTTTAA
*
101274372 TATTTTGA
1 TATTTTAA
101274380 TATTTTAA
1 TATTTTAA
101274388 TATTTT-A
1 TATTTTAA
101274395 TATTTTATA
1 TATTTTA-A
*
101274404 TATTTTAT
1 TATTTTAA
101274412 TATT
1 TATT
101274416 CACATTATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:101275013 original size:19 final size:19
Alignment explanation
Indices: 101274989--101275075 Score: 133
Period size: 19 Copynumber: 4.6 Consensus size: 19
101274979 CGTCGCTACA
101274989 TTAGATATGATATGCAATC
1 TTAGATATGATATGCAATC
101275008 TTAGATATGATA--CAATC
1 TTAGATATGATATGCAATC
*
101275025 TTAGATAAGATATGCAATC
1 TTAGATATGATATGCAATC
101275044 TTAGATATGATATGCAATC
1 TTAGATATGATATGCAATC
101275063 TTGAAGATATGAT
1 TT--AGATATGAT
101275076 CTTGTAATCT
Statistics
Matches: 62, Mismatches: 2, Indels: 6
0.89 0.03 0.09
Matches are distributed among these distances:
17 16 0.26
19 37 0.60
21 9 0.15
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
TTAGATATGATATGCAATC
Found at i:101275037 original size:36 final size:37
Alignment explanation
Indices: 101274989--101275064 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 37
101274979 CGTCGCTACA
*
101274989 TTAGATATGATATGCAATCTTAGATATGATA-CAATC
1 TTAGATAAGATATGCAATCTTAGATATGATAGCAATC
101275025 TTAGATAAGATATGCAATCTTAGATATGATATGCAATC
1 TTAGATAAGATATGCAATCTTAGATATGATA-GCAATC
101275063 TT
1 TT
101275065 GAAGATATGA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
36 30 0.81
38 7 0.19
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (37 bp):
TTAGATAAGATATGCAATCTTAGATATGATAGCAATC
Found at i:101280744 original size:16 final size:15
Alignment explanation
Indices: 101280723--101280775 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 15
101280713 TCTATTTCAA
101280723 AAAAAAGGAAAAAAAG
1 AAAAAA-GAAAAAAAG
101280739 AAAAAAGAAAAAAAAG
1 AAAAAAG-AAAAAAAG
101280755 AGAAAAA-AATAAAAAG
1 A-AAAAAGAA-AAAAAG
101280771 AAAAA
1 AAAAA
101280776 TGGAGAGGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.21
16 22 0.65
17 5 0.15
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (15 bp):
AAAAAAGAAAAAAAG
Found at i:101280769 original size:9 final size:9
Alignment explanation
Indices: 101280721--101280769 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
101280711 CTTCTATTTC
101280721 AAAAAAAAG
1 AAAAAAAAG
*
101280730 GAAAAAAAG
1 AAAAAAAAG
101280739 --AAAAAAG
1 AAAAAAAAG
101280746 AAAAAAAAG
1 AAAAAAAAG
*
101280755 AGAAAAAAAT
1 A-AAAAAAAG
101280765 AAAAA
1 AAAAA
101280770 GAAAAATGGA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
7 7 0.20
9 20 0.57
10 8 0.23
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:101280782 original size:26 final size:26
Alignment explanation
Indices: 101280721--101280775 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
101280711 CTTCTATTTC
101280721 AAAAAAAAG-GAAAAAAAGAAAAAAG
1 AAAAAAAAGAGAAAAAAAGAAAAAAG
*
101280746 AAAAAAAAGAGAAAAAAA-TAAAAAG
1 AAAAAAAAGAGAAAAAAAGAAAAAAG
101280771 AAAAA
1 AAAAA
101280776 TGGAGAGGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (26 bp):
AAAAAAAAGAGAAAAAAAGAAAAAAG
Found at i:101281827 original size:44 final size:44
Alignment explanation
Indices: 101281629--101282121 Score: 367
Period size: 44 Copynumber: 11.2 Consensus size: 44
101281619 CAAAGAAACA
* * *
101281629 AGATTTGGCATCCTTGTGTTTATAGAGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * * * * * * **
101281673 AGATCTGACA-CTCTTGTGCTTACAGCGAAGC-AGATCAAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGC
* * *
101281718 AGCA--TGGCATCCTTGTGTTTATAGGGAACAAGTTGAAGAT-TC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* *
101281760 AG-TATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
*
101281803 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * * * * * * ** **
101281847 AGATCTGACATTCTTGTGCTTACAGCGAAGTAGATCGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGC
** *
101281892 A-ACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
*
101281935 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
** * * * * ** * **
101281979 AGACCTGACATTCCTGTGCTTACAACGAAGC-AGATCAAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGC
*
101282024 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * * * *
101282067 AGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAG--ATAGC
*
101282113 TGATTTGGC
1 AGATTTGGC
101282122 TTTCACGGTT
Statistics
Matches: 351, Mismatches: 78, Indels: 38
0.75 0.17 0.08
Matches are distributed among these distances:
42 40 0.11
43 30 0.09
44 233 0.66
45 33 0.09
46 15 0.04
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
Found at i:101281840 original size:174 final size:176
Alignment explanation
Indices: 101281629--101281981 Score: 593
Period size: 174 Copynumber: 2.0 Consensus size: 176
101281619 CAAAGAAACA
*
101281629 AGATTTGGCATCCTTGTGTTTATAGAGAACAAATCGAAGATAGCAGATCTGACACTCTTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGAGAACAAATCGAAGATAGCAGATCTGACACTCTTGTGCTT
* *
101281694 ACAGCGAAGCAGATCAAAGATTTCAGCATGGCATCCTTGTGTTTATAGGGAACAAGTTGAAGAT-
66 ACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
* * *
101281758 TCAG-TATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
131 GCAGATATGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
* *
101281803 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCTTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGAGAACAAATCGAAGATAGCAGATCTGACACTCTTGTGCTT
* *
101281868 ACAGCGAAGTAGATCGAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
101281933 GCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
131 GCAGATATGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
101281979 AGA
1 AGA
101281982 CCTGACATTC
Statistics
Matches: 166, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
174 122 0.73
175 3 0.02
176 41 0.25
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (176 bp):
AGATTTGGCATCCCTGTGTTTATAGAGAACAAATCGAAGATAGCAGATCTGACACTCTTGTGCTT
ACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GCAGATATGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
Found at i:101281919 original size:132 final size:132
Alignment explanation
Indices: 101281763--101282106 Score: 598
Period size: 132 Copynumber: 2.6 Consensus size: 132
101281753 AAGATTCAGT
101281763 ATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
1 ATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
* * * * *
101281828 GGAACAAATCGAAGATAGCAGATCTGACATTCTTGTGCTTACAGCGAAGTAGATCGAAGATTTCA
66 GGAACAAATCGAAGATAGCAGACCTGACATTCCTGTGCTTACAACGAAGCAGATCAAAGATTTCA
101281893 AC
131 AC
101281895 ATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
1 ATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
101281960 GGAACAAATCGAAGATAGCAGACCTGACATTCCTGTGCTTACAACGAAGCAGATCAAAGATTTCA
66 GGAACAAATCGAAGATAGCAGACCTGACATTCCTGTGCTTACAACGAAGCAGATCAAAGATTTCA
*
101282025 GC
131 AC
* * * *
101282027 ATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCTTGTGCTTACAA
1 ATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
101282092 GGAACAAATCGAAGA
66 GGAACAAATCGAAGA
101282107 CATAGCTGAT
Statistics
Matches: 202, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 202 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (132 bp):
ATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
GGAACAAATCGAAGATAGCAGACCTGACATTCCTGTGCTTACAACGAAGCAGATCAAAGATTTCA
AC
Found at i:101282337 original size:165 final size:165
Alignment explanation
Indices: 101282153--101282491 Score: 579
Period size: 165 Copynumber: 2.1 Consensus size: 165
101282143 AAATCTAAAA
101282153 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACAGAGA
1 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACAGAGA
** * * *
101282218 GCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTAAAGTAGATCCAAGGTGATTTGGCAT
66 GCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCAT
101282283 CCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
131 CCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
* *
101282318 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCTATATTCGACGGAGA
1 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACAGAGA
* *
101282383 GCAGACACATAGTAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCAT
66 GCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCAT
*
101282448 TCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
131 CCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
*
101282483 CGATTTGGC
1 TGATTTGGC
101282492 TTTCACGTGC
Statistics
Matches: 163, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
165 163 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (165 bp):
TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACAGAGA
GCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCAT
CCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
Found at i:101282678 original size:206 final size:206
Alignment explanation
Indices: 101282315--101282760 Score: 723
Period size: 206 Copynumber: 2.2 Consensus size: 206
101282305 TCGAAGACAT
101282315 AGCTGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCTATATTCGACGG
1 AGCTGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCTATATTCGACGG
* * *
101282380 AGAGCAGACACATAGTAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGG
66 AGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTGG
* *
101282445 CATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCCGATTTGGCTTTCACGTGCTTAGGATG
131 CATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCCGATTTGGCTTTCACGTGCTTACGATG
101282510 AAGCAAATCTA
196 AAGCAAATCTA
*
101282521 AGCTGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTAC-ATATTTGACG
1 AGCTGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCT-CTATATTCGACG
* *
101282585 GAGGGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTG
65 GAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTG
* * * ** * *
101282650 GTATCCTTGTGCTTACAATGAGCAAATCGAAGACATAGTTGATTTGGTTTTCGCGTGCTTACGAT
130 GCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCCGATTTGGCTTTCACGTGCTTACGAT
101282715 GAAGCAAATCTA
195 GAAGCAAATCTA
* *
101282727 AGATGATTTGGCATCTCTGTATTGTCAGAAAACA
1 AGCTGATTTGGCATCTCTGTATTGTCAGAGAACA
101282761 GATCAAAGAT
Statistics
Matches: 222, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
206 221 1.00
207 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
AGCTGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCTATATTCGACGG
AGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTGG
CATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCCGATTTGGCTTTCACGTGCTTACGATG
AAGCAAATCTA
Found at i:101283181 original size:19 final size:19
Alignment explanation
Indices: 101283157--101283235 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
101283147 AATCTTTAAG
101283157 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
101283176 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
101283195 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
101283212 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
101283233 GAT
1 GAT
101283236 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:101283187 original size:36 final size:36
Alignment explanation
Indices: 101283147--101283234 Score: 119
Period size: 36 Copynumber: 2.4 Consensus size: 36
101283137 ATGGAAATAT
101283147 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGACAATCTTAGATATGATATGC
101283183 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG--ACAATCTTAGATATGATATGC
*
101283219 AATCTTGAAGATATGA
1 AATCTTTAAGATATGA
101283235 TCTTGTAATC
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 29 0.63
37 1 0.02
38 7 0.15
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (36 bp):
AATCTTTAAGATATGACAATCTTAGATATGATATGC
Found at i:101287488 original size:22 final size:23
Alignment explanation
Indices: 101287462--101287507 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
101287452 CAACCAAACC
101287462 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
101287484 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
101287507 A
1 A
101287508 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:101287513 original size:23 final size:23
Alignment explanation
Indices: 101287469--101287513 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
101287459 ACCAATTCAA
*
101287469 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
101287492 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
101287514 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:101295749 original size:9 final size:9
Alignment explanation
Indices: 101295735--101295764 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
101295725 ATGATTCTAA
101295735 ACTTTTTGG
1 ACTTTTTGG
101295744 ACTTTTTGG
1 ACTTTTTGG
101295753 ACTTTTTGG
1 ACTTTTTGG
101295762 ACT
1 ACT
101295765 ATATAACTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.13, C:0.13, G:0.20, T:0.53
Consensus pattern (9 bp):
ACTTTTTGG
Found at i:101301136 original size:25 final size:25
Alignment explanation
Indices: 101301102--101301153 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
101301092 AGTGCAATGT
101301102 GATTGATGAGTGGATTTATAGTGGG
1 GATTGATGAGTGGATTTATAGTGGG
101301127 GATTGATGAGTGGATTTATAGTGGG
1 GATTGATGAGTGGATTTATAGTGGG
101301152 GA
1 GA
101301154 AATTTTTCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.25, C:0.00, G:0.40, T:0.35
Consensus pattern (25 bp):
GATTGATGAGTGGATTTATAGTGGG
Found at i:101307013 original size:8 final size:8
Alignment explanation
Indices: 101307000--101307024 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
101306990 ATTTTTGTGT
101307000 TCAATTTC
1 TCAATTTC
101307008 TCAATTTC
1 TCAATTTC
101307016 TCAATTTC
1 TCAATTTC
101307024 T
1 T
101307025 TTCGTTACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCAATTTC
Found at i:101310656 original size:23 final size:22
Alignment explanation
Indices: 101310629--101310710 Score: 64
Period size: 23 Copynumber: 3.7 Consensus size: 22
101310619 ATTTTTTTAT
101310629 ATATAATTTATTTATTTTAAAA
1 ATATAATTTATTTATTTTAAAA
*
101310651 ACTATACATATA-TTATTATTAAAA
1 A-TATA-ATTTATTTATT-TTAAAA
* *
101310675 ATACT-ATTTATATATTTATATAA
1 ATA-TAATTTATTTATTT-TAAAA
101310698 A-A-AATTTATTTAT
1 ATATAATTTATTTAT
101310711 CATATATTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 15
0.71 0.07 0.22
Matches are distributed among these distances:
21 9 0.19
22 7 0.15
23 20 0.42
24 12 0.25
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (22 bp):
ATATAATTTATTTATTTTAAAA
Found at i:101310686 original size:24 final size:24
Alignment explanation
Indices: 101310634--101310721 Score: 67
Period size: 24 Copynumber: 3.6 Consensus size: 24
101310624 TTTATATATA
101310634 ATTTAT-TTATT-TTAAAAACTAT
1 ATTTATATTATTATTAAAAACTAT
**
101310656 ACATATATTATTATTAAAAA-TACT
1 ATTTATATTATTATTAAAAACTA-T
* *
101310680 ATTTATA-TATTTATATAAAAAATTT
1 ATTTATATTA-TTAT-TAAAAACTAT
101310705 ATTTATCATATATTATT
1 ATTTAT-AT-TATTATT
101310722 TTCCTATATA
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
22 4 0.08
23 9 0.17
24 17 0.33
25 13 0.25
26 3 0.06
27 4 0.08
28 2 0.04
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (24 bp):
ATTTATATTATTATTAAAAACTAT
Found at i:101310687 original size:26 final size:25
Alignment explanation
Indices: 101310640--101310721 Score: 73
Period size: 26 Copynumber: 3.3 Consensus size: 25
101310630 TATAATTTAT
**
101310640 TTATT-TTAAAAA-CTATACATATA
1 TTATTATTAAAAATCTATTTATATA
101310663 TTATTATTAAAAATACTATTTATATA
1 TTATTATTAAAAAT-CTATTTATATA
* *
101310689 TT-TATATAAAAAATTTATTTATCATA
1 TTAT-TATTAAAAATCTATTTAT-ATA
101310715 -TATTATT
1 TTATTATT
101310722 TTCCTATATA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
23 5 0.10
24 7 0.15
25 12 0.25
26 24 0.50
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (25 bp):
TTATTATTAAAAATCTATTTATATA
Found at i:101310802 original size:36 final size:37
Alignment explanation
Indices: 101310726--101310804 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 37
101310716 ATTATTTTCC
* *
101310726 TATATATTTATATTATATTTTATTATATAACATTTTT
1 TATATATTTATATTATATTTTATTATATAACACTTAT
* * **
101310763 TATAT-TTTATATTTTCTTTTATTATATATTACTTAT
1 TATATATTTATATTATATTTTATTATATAACACTTAT
101310799 TATATA
1 TATATA
101310805 GTTTTTTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
36 30 0.86
37 5 0.14
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (37 bp):
TATATATTTATATTATATTTTATTATATAACACTTAT
Found at i:101310828 original size:29 final size:29
Alignment explanation
Indices: 101310763--101310830 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 29
101310753 TAACATTTTT
* * *
101310763 TATATTTTATATTTTCTTTTATTATATAT
1 TATATTATATAGTTTCTTTTATTATATAG
101310792 TACTTATTATATAGTTT-TTTTATATATATAG
1 TA--TATTATATAGTTTCTTTTAT-TATATAG
101310823 TATATTAT
1 TATATTAT
101310831 CTATTATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
29 8 0.24
30 6 0.18
31 19 0.58
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (29 bp):
TATATTATATAGTTTCTTTTATTATATAG
Found at i:101310846 original size:16 final size:16
Alignment explanation
Indices: 101310827--101310874 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
101310817 ATATAGTATA
101310827 TTATCTATTATATTAT
1 TTATCTATTATATTAT
* *
101310843 TTATGTTTTATATTA-
1 TTATCTATTATATTAT
101310858 -T-TC-ATTATATTAT
1 TTATCTATTATATTAT
101310871 TTAT
1 TTAT
101310875 AATTTTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 7
0.69 0.11 0.19
Matches are distributed among these distances:
12 8 0.32
13 1 0.04
14 2 0.08
15 1 0.04
16 13 0.52
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (16 bp):
TTATCTATTATATTAT
Found at i:101310947 original size:19 final size:18
Alignment explanation
Indices: 101310923--101310979 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
101310913 TTTTAACTCA
101310923 TATTATATATATATTTCAT
1 TATTATATAT-TATTTCAT
*
101310942 TATTATTTATTTATTT-ATT
1 TATTATATA-TTATTTCA-T
**
101310961 TATTATGCATTATTTCAT
1 TATTATATATTATTTCAT
101310979 T
1 T
101310980 TTAAACTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 9 0.28
19 22 0.69
20 1 0.03
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (18 bp):
TATTATATATTATTTCAT
Found at i:101310980 original size:19 final size:20
Alignment explanation
Indices: 101310934--101310980 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
101310924 ATTATATATA
**
101310934 TATTTCA-TTATTATTTATT
1 TATTTCATTTATTATGCATT
101310953 TATTT-ATTTATTATGCA-T
1 TATTTCATTTATTATGCATT
101310971 TATTTCATTT
1 TATTTCATTT
101310981 TAAACTGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (20 bp):
TATTTCATTTATTATGCATT
Found at i:101327527 original size:18 final size:17
Alignment explanation
Indices: 101327499--101327542 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
101327489 ATAAAGGTTC
*
101327499 TGGATTTTTCTATTGTA
1 TGGACTTTTCTATTGTA
*
101327516 TGGACCTTTTCTTTTGTA
1 TGGA-CTTTTCTATTGTA
101327534 TGGACTTTT
1 TGGACTTTT
101327543 ATGTTCTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.14, C:0.11, G:0.18, T:0.57
Consensus pattern (17 bp):
TGGACTTTTCTATTGTA
Found at i:101328240 original size:35 final size:35
Alignment explanation
Indices: 101328201--101328289 Score: 135
Period size: 35 Copynumber: 2.5 Consensus size: 35
101328191 AATTATTATC
101328201 ATTATGATTTATAAATTTATTTCAACACTATATTT
1 ATTATGATTTATAAATTTATTTCAACACTATATTT
*
101328236 ATTATGATTTATAAATTTATTTCAACACTTTATTT
1 ATTATGATTTATAAATTTATTTCAACACTATATTT
101328271 ACTTA-GCATTATATAAATT
1 A-TTATG-ATT-TATAAATT
101328290 GTAATAAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
35 36 0.72
36 6 0.12
37 8 0.16
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (35 bp):
ATTATGATTTATAAATTTATTTCAACACTATATTT
Found at i:101328255 original size:18 final size:18
Alignment explanation
Indices: 101328201--101328256 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
101328191 AATTATTATC
101328201 ATTATGATTTATAAATTT
1 ATTATGATTTATAAATTT
* ** *
101328219 ATT-TCA-ACACTATATTT
1 ATTATGATTTA-TAAATTT
101328236 ATTATGATTTATAAATTT
1 ATTATGATTTATAAATTT
101328254 ATT
1 ATT
101328257 TCAACACTTT
Statistics
Matches: 27, Mismatches: 8, Indels: 6
0.66 0.20 0.15
Matches are distributed among these distances:
16 1 0.04
17 11 0.41
18 14 0.52
19 1 0.04
ACGTcount: A:0.38, C:0.05, G:0.04, T:0.54
Consensus pattern (18 bp):
ATTATGATTTATAAATTT
Found at i:101329613 original size:70 final size:70
Alignment explanation
Indices: 101329528--101329658 Score: 244
Period size: 70 Copynumber: 1.9 Consensus size: 70
101329518 GCGCACACGG
*
101329528 CCGTGTAGAATTGGGAATTAGGATTTTTGGGCTGATTTGGGTGCCACACGGCCTGGCCACAGGCA
1 CCGTGTAGAATTGGGAACTAGGATTTTTGGGCTGATTTGGGTGCCACACGGCCTGGCCACAGGCA
101329593 CATGC
66 CATGC
*
101329598 CCGTGTGGAATTGGGAACTAGGATTTTTGGGCTGATTTGGGTGCCACACGGCCTGGCCACA
1 CCGTGTAGAATTGGGAACTAGGATTTTTGGGCTGATTTGGGTGCCACACGGCCTGGCCACA
101329659 CGGTCGTGTG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 59 1.00
ACGTcount: A:0.19, C:0.21, G:0.34, T:0.26
Consensus pattern (70 bp):
CCGTGTAGAATTGGGAACTAGGATTTTTGGGCTGATTTGGGTGCCACACGGCCTGGCCACAGGCA
CATGC
Found at i:101330532 original size:92 final size:92
Alignment explanation
Indices: 101330352--101330579 Score: 208
Period size: 92 Copynumber: 2.5 Consensus size: 92
101330342 GAGAAGGAAG
* * * **
101330352 ACTGTACTGTACGTACGTCAGCTTTACTACGTACCATTATCTGAACTGGCAGTTTAACTTTAAAT
1 ACTGTACCGTACGTACGTCAGCTTTACTACGTACCATTATCTGAACTAGCAGTGTAACTGCAAAT
* * * *
101330417 AATTGGTATAGCGGTTTACCGCATCGC
66 AACTGGTACAGCAGATTACCGCATCGC
* * ** *
101330444 ACTGTACCGTACGTACGTTAG-TTATGCTACGTATTATTATCTGATCTAGCAGTGTAACTGCAAC
1 ACTGTACCGTACGTACGTCAGCTT-TACTACGTACCATTATCTGAACTAGCAGTGTAACTGCAA-
* *
101330508 ATAACT-GTACAGCAGATTATCGCATTGC
64 ATAACTGGTACAGCAGATTACCGCATCGC
*** * * * **
101330536 ACTGTATTATACGTACGTCAACTATGCTGTGTACCATTATCTGA
1 ACTGTACCGTACGTACGTCAGCTTTACTACGTACCATTATCTGA
101330580 TTTGACTTGT
Statistics
Matches: 107, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
91 2 0.02
92 99 0.93
93 6 0.06
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (92 bp):
ACTGTACCGTACGTACGTCAGCTTTACTACGTACCATTATCTGAACTAGCAGTGTAACTGCAAAT
AACTGGTACAGCAGATTACCGCATCGC
Found at i:101331584 original size:21 final size:21
Alignment explanation
Indices: 101331558--101331614 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
101331548 TATTACTTGA
101331558 AAAATATATTAAAAATGA-ATT
1 AAAATATATTAAAAATGAGA-T
*
101331579 AAAATA-ATTACAAATTGAGAT
1 AAAATATATTA-AAAATGAGAT
*
101331600 AAAAT-TATCAAAAAT
1 AAAATATATTAAAAAT
101331615 CTCAAATATG
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
20 8 0.27
21 21 0.70
22 1 0.03
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.30
Consensus pattern (21 bp):
AAAATATATTAAAAATGAGAT
Found at i:101337509 original size:7 final size:7
Alignment explanation
Indices: 101337497--101337558 Score: 115
Period size: 7 Copynumber: 8.9 Consensus size: 7
101337487 ACAAAGTTGG
101337497 TTTAGAT
1 TTTAGAT
101337504 TTTAGAT
1 TTTAGAT
*
101337511 TTTGGAT
1 TTTAGAT
101337518 TTTAGAT
1 TTTAGAT
101337525 TTTAGAT
1 TTTAGAT
101337532 TTTAGAT
1 TTTAGAT
101337539 TTTAGAT
1 TTTAGAT
101337546 TTTAGAT
1 TTTAGAT
101337553 TTTAGA
1 TTTAGA
101337559 GTGCTAATCT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 53 1.00
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
TTTAGAT
Found at i:101343342 original size:53 final size:53
Alignment explanation
Indices: 101343261--101343416 Score: 210
Period size: 53 Copynumber: 3.0 Consensus size: 53
101343251 GACGAAAAAT
* * *
101343261 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGTATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
*
101343313 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* * *
101343366 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTA
101343417 TGATATGTGA
Statistics
Matches: 94, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
51 4 0.04
52 11 0.12
53 79 0.84
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
Found at i:101345057 original size:117 final size:117
Alignment explanation
Indices: 101344933--101345166 Score: 423
Period size: 117 Copynumber: 2.0 Consensus size: 117
101344923 ATTAATACAA
* ** * *
101344933 AACAAACATATACATTTACAAGCCAACTCTCATGGCTATATTCGTAACCAATGTATCACAAGTAG
1 AACAAACATATACATTTACAAGCCAACTCTCATGGCTATACTCACAACCAAAGTATCACAACTAG
101344998 CCTATACATGCCATATACCATATATACACAACTCAAAAGTACCAACTTAGGT
66 CCTATACATGCCATATACCATATATACACAACTCAAAAGTACCAACTTAGGT
101345050 AACAAACATATACATTTACAAGCCAACTCTCATGGCTATACTCACAACCAAAGTATCACAACTAG
1 AACAAACATATACATTTACAAGCCAACTCTCATGGCTATACTCACAACCAAAGTATCACAACTAG
101345115 CCTATACATGCCATATACCATATATACACAACTCAAAAGTACCAACTTAGGT
66 CCTATACATGCCATATACCATATATACACAACTCAAAAGTACCAACTTAGGT
101345167 GTTTGATAGT
Statistics
Matches: 112, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 112 1.00
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (117 bp):
AACAAACATATACATTTACAAGCCAACTCTCATGGCTATACTCACAACCAAAGTATCACAACTAG
CCTATACATGCCATATACCATATATACACAACTCAAAAGTACCAACTTAGGT
Found at i:101345607 original size:47 final size:48
Alignment explanation
Indices: 101345537--101345668 Score: 185
Period size: 47 Copynumber: 2.8 Consensus size: 48
101345527 CACAATCGAT
* * *
101345537 AAGTACCTATACCATGGCCCGTAGCCAAATTAAGGTAAGTTATC-CCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCG
* * * *
101345584 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGATAACTCCTCTCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCG
*
101345632 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
101345669 TCATTCGCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 38 0.51
48 36 0.49
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCG
Found at i:101356911 original size:30 final size:30
Alignment explanation
Indices: 101356875--101356935 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
101356865 AGGATCGGGC
101356875 TAATTTCTTGCTGCTGCACAGAGGAAACAG
1 TAATTTCTTGCTGCTGCACAGAGGAAACAG
*
101356905 TAATTTCTTGCTGCTGCACAGGGGAAACAG
1 TAATTTCTTGCTGCTGCACAGAGGAAACAG
101356935 T
1 T
101356936 CTCTAAATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (30 bp):
TAATTTCTTGCTGCTGCACAGAGGAAACAG
Found at i:101361934 original size:6 final size:6
Alignment explanation
Indices: 101361925--101361953 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
101361915 TATACATAGT
101361925 TAGGGA TAGGGA TAGGGA TAGGGA TAGGG
1 TAGGGA TAGGGA TAGGGA TAGGGA TAGGG
101361954 GGGTAATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.52, T:0.17
Consensus pattern (6 bp):
TAGGGA
Found at i:101364915 original size:27 final size:27
Alignment explanation
Indices: 101364885--101364968 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
101364875 TTTTTATATT
101364885 TTTTAGAAATTTATATATTTAGATGGG
1 TTTTAGAAATTTATATATTTAGATGGG
* ** * * * *
101364912 TTTTAGACATAAAACAGTTTTTATAT--T
1 TTTTAGAAAT-TTATA-TATTTAGATGGG
101364939 TTTTAGAAATTTATATATTTAGATGGG
1 TTTTAGAAATTTATATATTTAGATGGG
101364966 TTT
1 TTT
101364969 AGGGTAGGAT
Statistics
Matches: 39, Mismatches: 14, Indels: 8
0.64 0.23 0.13
Matches are distributed among these distances:
25 7 0.18
26 2 0.05
27 21 0.54
28 2 0.05
29 7 0.18
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.50
Consensus pattern (27 bp):
TTTTAGAAATTTATATATTTAGATGGG
Found at i:101364923 original size:54 final size:54
Alignment explanation
Indices: 101364858--101364968 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 54
101364848 ATCAAGTTCA
*
101364858 TTTTGGACATAAAACAGTTTTTATATTTTTTAGAAATTTATATATTTAGATGGG
1 TTTTAGACATAAAACAGTTTTTATATTTTTTAGAAATTTATATATTTAGATGGG
101364912 TTTTAGACATAAAACAGTTTTTATATTTTTTAGAAATTTATATATTTAGATGGG
1 TTTTAGACATAAAACAGTTTTTATATTTTTTAGAAATTTATATATTTAGATGGG
101364966 TTT
1 TTT
101364969 AGGGTAGGAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.50
Consensus pattern (54 bp):
TTTTAGACATAAAACAGTTTTTATATTTTTTAGAAATTTATATATTTAGATGGG
Found at i:101365112 original size:2 final size:2
Alignment explanation
Indices: 101365105--101365132 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
101365095 GCTTGACTTG
101365105 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101365133 TAAGTTTTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101365418 original size:19 final size:19
Alignment explanation
Indices: 101365375--101365422 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
101365365 TCTCAATTAT
* *
101365375 TAAAAATTATGAGAAAATA
1 TAAAAAATACGAGAAAATA
101365394 TCAAAAAATACGAGAAAATA
1 T-AAAAAATACGAGAAAATA
101365414 TAAAAAATA
1 TAAAAAATA
101365423 TAAGAGAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.67, C:0.04, G:0.08, T:0.21
Consensus pattern (19 bp):
TAAAAAATACGAGAAAATA
Found at i:101365432 original size:19 final size:19
Alignment explanation
Indices: 101365375--101365433 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
101365365 TCTCAATTAT
*
101365375 TAAAAATTATGAGAAAATA
1 TAAAAAATATGAGAAAATA
*
101365394 TCAAAAAATACGAGAAAATA
1 T-AAAAAATATGAGAAAATA
* *
101365414 TAAAAAATATAAGAGAATA
1 TAAAAAATATGAGAAAATA
101365433 T
1 T
101365434 CAAATATTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.64, C:0.03, G:0.10, T:0.22
Consensus pattern (19 bp):
TAAAAAATATGAGAAAATA
Found at i:101365561 original size:13 final size:13
Alignment explanation
Indices: 101365543--101365568 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
101365533 TTATATTAGA
101365543 AAATAAAAATTTT
1 AAATAAAAATTTT
101365556 AAATAAAAATTTT
1 AAATAAAAATTTT
101365569 GTTTTGAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAATAAAAATTTT
Found at i:101366976 original size:25 final size:27
Alignment explanation
Indices: 101366939--101366992 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
101366929 TCAAACATGC
101366939 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
101366965 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
101366991 AT
1 AT
101366993 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:101367000 original size:26 final size:27
Alignment explanation
Indices: 101366956--101367031 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 27
101366946 TCAATTTAAC
* * *
101366956 CCTAGGGGTATTTCGGTAATTTTGCA-
1 CCTAGGGGTATTACAGTAATTTTCCAG
*
101366982 CCTAGGGGTATAACAGTAATTTTCCATG
1 CCTAGGGGTATTACAGTAATTTTCCA-G
* *
101367010 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATTACAGTAATTT
101367032 AGCTGCTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.54
28 19 0.46
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (27 bp):
CCTAGGGGTATTACAGTAATTTTCCAG
Found at i:101368513 original size:26 final size:26
Alignment explanation
Indices: 101368478--101368585 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
101368468 TGAAATTCCC
*
101368478 ATCATAGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
101368504 ATCATGGAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
* *
101368530 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
101368556 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
101368582 ATCA
1 ATCA
101368586 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
25 4 0.05
26 68 0.91
27 3 0.04
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:101373455 original size:12 final size:12
Alignment explanation
Indices: 101373438--101373468 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
101373428 AGTACTACCT
101373438 CGGCCTCGACCA
1 CGGCCTCGACCA
101373450 CGGCCTCGACCA
1 CGGCCTCGACCA
101373462 CGGCCTC
1 CGGCCTC
101373469 TTCCCCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:101374952 original size:26 final size:26
Alignment explanation
Indices: 101374921--101375028 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
101374911 TGAAATTCCC
*
101374921 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
101374947 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
101374973 ATCATAGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
101374999 ATCATGGAACATGTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
101375025 ATCA
1 ATCA
101375029 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:101375482 original size:17 final size:18
Alignment explanation
Indices: 101375455--101375490 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
101375445 ATATAATTTT
101375455 TCATGAAAAAATTAGAAA
1 TCATGAAAAAATTAGAAA
*
101375473 TCAT-AAAAAATTATAAA
1 TCATGAAAAAATTAGAAA
101375490 T
1 T
101375491 GTTATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.28
Consensus pattern (18 bp):
TCATGAAAAAATTAGAAA
Found at i:101375609 original size:18 final size:18
Alignment explanation
Indices: 101375586--101375643 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
101375576 AAACTAATAA
101375586 AAAATCATAAAAATTATT
1 AAAATCATAAAAATTATT
101375604 AAAATCATAAAAAATTA-T
1 AAAATCAT-AAAAATTATT
* *
101375622 AACAATTATTAAAATT-TT
1 AA-AATCATAAAAATTATT
101375640 AAAA
1 AAAA
101375644 AGAAAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
17 2 0.06
18 20 0.57
19 13 0.37
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAATCATAAAAATTATT
Found at i:101375644 original size:28 final size:28
Alignment explanation
Indices: 101375582--101375636 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
101375572 ATAAAAACTA
101375582 ATAAAAAATCATAAAAATTATTAAAATC
1 ATAAAAAATCATAAAAATTATTAAAATC
* *
101375610 ATAAAAAATTATAACAATTATTAAAAT
1 ATAAAAAATCATAAAAATTATTAAAAT
101375637 TTTAAAAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (28 bp):
ATAAAAAATCATAAAAATTATTAAAATC
Found at i:101378196 original size:26 final size:26
Alignment explanation
Indices: 101378159--101378216 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
101378149 TGATACAAAT
101378159 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
101378185 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
101378211 TGATAA
1 TGATAA
101378217 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:101433011 original size:12 final size:13
Alignment explanation
Indices: 101432983--101433015 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
101432973 TTATTTCTTT
101432983 TTCTCCATCTACC
1 TTCTCCATCTACC
*
101432996 TTCTCC-TCTTCC
1 TTCTCCATCTACC
101433008 TTCTCCAT
1 TTCTCCAT
101433016 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:101434111 original size:28 final size:28
Alignment explanation
Indices: 101434079--101434140 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
101434069 ATTTACTAGA
*
101434079 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
101434107 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
101434135 ATACCC
1 ATACCC
101434141 TAGGGTTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:101434289 original size:28 final size:27
Alignment explanation
Indices: 101434248--101434337 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
101434238 AGGAAACGTC
*
101434248 CTGGTGGCTA-TGCCACAAATTATTTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
101434276 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
101434303 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
101434332 CTGGTG
1 CTGGTG
101434338 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:101434310 original size:27 final size:28
Alignment explanation
Indices: 101434248--101434337 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
101434238 AGGAAACGTC
* *
101434248 CTGGTGGCTA-TGCCACAAATTATTTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
101434276 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
101434303 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
101434332 CTGGTG
1 CTGGTG
101434338 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:101434348 original size:29 final size:28
Alignment explanation
Indices: 101434258--101434348 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
101434248 CTGGTGGCTA
* * * *
101434258 TGCCACAAATTATTTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
101434286 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
101434313 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
101434342 TGTCACA
1 TGCCACA
101434349 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
27 22 0.43
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:101434356 original size:55 final size:56
Alignment explanation
Indices: 101434248--101434362 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
101434238 AGGAAACGTC
* * * *
101434248 CTGGTGGCTATGCCACAAATTATTTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
101434303 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
101434359 CTGG
1 CTGG
101434363 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:101434837 original size:13 final size:14
Alignment explanation
Indices: 101434814--101434842 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
101434804 TTATGGTTTG
101434814 ATTTTACTTTTATT
1 ATTTTACTTTTATT
101434828 ATTTTA-TTTTATT
1 ATTTTACTTTTATT
101434841 AT
1 AT
101434843 GATGAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.72
Consensus pattern (14 bp):
ATTTTACTTTTATT
Found at i:101436337 original size:6 final size:6
Alignment explanation
Indices: 101436318--101436358 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
101436308 AATAATAACG
* * *
101436318 AAAAAT AAACAT AAAAAT AAAAAT AGAAAT AGAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
101436359 GATAAGAGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:101441703 original size:13 final size:13
Alignment explanation
Indices: 101441685--101441709 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101441675 GGTTTGTTTA
101441685 TTAAACTAATTAT
1 TTAAACTAATTAT
101441698 TTAAACTAATTA
1 TTAAACTAATTA
101441710 ACTAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Done.