Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 313 of 343
Found at i:101449849 original size:28 final size:28
Alignment explanation
Indices: 101449796--101449879 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
101449786 CACTTTGTGC
101449796 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
101449825 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
101449853 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
101449880 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:101449891 original size:23 final size:24
Alignment explanation
Indices: 101449800--101449893 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
101449790 TTGTGCTATT
101449800 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
101449827 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
101449857 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
101449880 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
101449894 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:101450119 original size:22 final size:23
Alignment explanation
Indices: 101450094--101450168 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 23
101450084 CAGCACTTTA
101450094 TGTGTCGTATTGTCAGGCACCTTG
1 TGTGTCGTATTGTCAGGCACC-TG
*
101450118 TGTGTCGCA--G-CAGGCACCTG
1 TGTGTCGTATTGTCAGGCACCTG
* *
101450138 TGTGTCG--TT-TCAGGCACTTA
1 TGTGTCGTATTGTCAGGCACCTG
101450158 TGTGTCGTATT
1 TGTGTCGTATT
101450169 CTGATCAGGT
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
20 24 0.56
21 8 0.19
22 3 0.07
24 8 0.19
ACGTcount: A:0.13, C:0.21, G:0.29, T:0.36
Consensus pattern (23 bp):
TGTGTCGTATTGTCAGGCACCTG
Found at i:101456275 original size:15 final size:17
Alignment explanation
Indices: 101456245--101456276 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
101456235 TTGATACTTG
101456245 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
101456262 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
101456277 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:101457509 original size:19 final size:19
Alignment explanation
Indices: 101457444--101457511 Score: 77
Period size: 18 Copynumber: 3.7 Consensus size: 19
101457434 AATTGATCGG
* *
101457444 TTATCCAGTAACAGTC-AA
1 TTATTCAGTAACAATCAAA
*
101457462 TTATTCAGTAAAAATCAAA
1 TTATTCAGTAACAATCAAA
* *
101457481 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
101457499 TTATTCAGTAACA
1 TTATTCAGTAACA
101457512 GTCGATCTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
18 28 0.68
19 13 0.32
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.31
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:101457703 original size:47 final size:47
Alignment explanation
Indices: 101457652--101457741 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 47
101457642 GAAACAGCAC
*
101457652 GGTACACAGAGTACCTCATCAGAACAAATCCGGAACAGTAACAATAT
1 GGTACACAGAGTACCTCATCAGAACAAATCCGAAACAGTAACAATAT
* ** *
101457699 GGTACACAGAGTACCTCGTTGGAACAAATCTGAAACAGTAACA
1 GGTACACAGAGTACCTCATCAGAACAAATCCGAAACAGTAACA
101457742 GTAACGGTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.18
Consensus pattern (47 bp):
GGTACACAGAGTACCTCATCAGAACAAATCCGAAACAGTAACAATAT
Found at i:101460217 original size:26 final size:26
Alignment explanation
Indices: 101460188--101460291 Score: 165
Period size: 26 Copynumber: 4.0 Consensus size: 26
101460178 TGGTACAAAT
101460188 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
101460214 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
101460240 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
101460266 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
101460292 AGATGGGAAT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
26 71 0.97
27 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:101464681 original size:21 final size:21
Alignment explanation
Indices: 101464657--101464716 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
101464647 TATCTAATTG
101464657 TAAACCCTAAACTATAAACCT
1 TAAACCCTAAACTATAAACCT
*
101464678 TAAACCC-AAAATATTAAACCT
1 TAAACCCTAAACTA-TAAACCT
* * *
101464699 TGAATCCTAAACCATAAA
1 TAAACCCTAAACTATAAA
101464717 ATCCTAATAG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 5 0.16
21 23 0.72
22 4 0.12
ACGTcount: A:0.50, C:0.25, G:0.02, T:0.23
Consensus pattern (21 bp):
TAAACCCTAAACTATAAACCT
Found at i:101464842 original size:21 final size:21
Alignment explanation
Indices: 101464804--101464864 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
101464794 CCCTAAATTA
* *
101464804 TAAAACTTAAAACTATAAACCC
1 TAAATCTT-AAACCATAAACCC
101464826 TAAATCTTAAACCATAAACCC
1 TAAATCTTAAACCATAAACCC
**
101464847 TAAATCCAAAACCATAAA
1 TAAATCTTAAACCATAAA
101464865 ACCTTAAACT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
21 28 0.80
22 7 0.20
ACGTcount: A:0.54, C:0.25, G:0.00, T:0.21
Consensus pattern (21 bp):
TAAATCTTAAACCATAAACCC
Found at i:101465217 original size:3 final size:3
Alignment explanation
Indices: 101465209--101465268 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
101465199 AATCATGTAT
101465209 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
101465257 TAA TAA TAA TAA
1 TAA TAA TAA TAA
101465269 GAGAAAAAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:101466430 original size:21 final size:21
Alignment explanation
Indices: 101466404--101466445 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
101466394 TGAGATCTTA
*
101466404 AGAAAAGGGTTTTCGAGTTTG
1 AGAAAAGGGTTTTCCAGTTTG
101466425 AGAAAAGGGTTTTCCAGTTTG
1 AGAAAAGGGTTTTCCAGTTTG
101466446 TTCATGTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.07, G:0.31, T:0.33
Consensus pattern (21 bp):
AGAAAAGGGTTTTCCAGTTTG
Found at i:101468209 original size:29 final size:29
Alignment explanation
Indices: 101468177--101468242 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
101468167 TAATTTGGAT
*
101468177 TAATTTATT-TAAATATTATTAAATTAATA
1 TAATTT-TTATAAATATTATTAAATTAAAA
*
101468206 TAATTTTTATAAATATTATTTAATTAAAA
1 TAATTTTTATAAATATTATTAAATTAAAA
101468235 TAATTTTT
1 TAATTTTT
101468243 TTCCATGTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 2 0.06
29 32 0.94
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
TAATTTTTATAAATATTATTAAATTAAAA
Found at i:101468233 original size:15 final size:15
Alignment explanation
Indices: 101468179--101468233 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
101468169 ATTTGGATTA
*
101468179 ATTTATTTAAATATT
1 ATTTAATTAAATATT
*
101468194 ATTAAATTAATATAATT
1 ATTTAATTAA-AT-ATT
101468211 -TTT-A-TAAATATT
1 ATTTAATTAAATATT
101468223 ATTTAATTAAA
1 ATTTAATTAAA
101468234 ATAATTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
12 3 0.09
13 5 0.16
14 4 0.12
15 13 0.41
16 4 0.12
17 3 0.09
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:101468347 original size:18 final size:18
Alignment explanation
Indices: 101468320--101468354 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
101468310 TGCTGAAGTA
101468320 ATAAAATTATTGTTAAGC
1 ATAAAATTATTGTTAAGC
*
101468338 ATAAATTTATTGTTAAG
1 ATAAAATTATTGTTAAG
101468355 TTTAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (18 bp):
ATAAAATTATTGTTAAGC
Found at i:101468548 original size:9 final size:9
Alignment explanation
Indices: 101468531--101468669 Score: 113
Period size: 9 Copynumber: 15.7 Consensus size: 9
101468521 TATATACTTG
101468531 AACTTACAT
1 AACTTACAT
*
101468540 AACTCACAT
1 AACTTACAT
101468549 AACTTACAT
1 AACTTACAT
* *
101468558 AATTTATAT
1 AACTTACAT
*
101468567 GACTTACAT
1 AACTTACAT
*
101468576 AACTCACAT
1 AACTTACAT
*
101468585 AACTCACAT
1 AACTTACAT
* *
101468594 AATTTACAG
1 AACTTACAT
101468603 AACTTACAT
1 AACTTACAT
* **
101468612 AATTTTTAT
1 AACTTACAT
101468621 AACTTACAT
1 AACTTACAT
101468630 AA--TACAT
1 AACTTACAT
* *
101468637 AA-ATAGAT
1 AACTTACAT
* *
101468645 ATCATATCAT
1 AACTTA-CAT
101468655 AACTTACAT
1 AACTTACAT
101468664 AACTTA
1 AACTTA
101468670 ATTATACTTA
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
7 7 0.07
8 5 0.05
9 84 0.82
10 6 0.06
ACGTcount: A:0.45, C:0.19, G:0.02, T:0.35
Consensus pattern (9 bp):
AACTTACAT
Found at i:101468572 original size:36 final size:36
Alignment explanation
Indices: 101468530--101468632 Score: 136
Period size: 36 Copynumber: 2.9 Consensus size: 36
101468520 ATATATACTT
*
101468530 GAACTTACATAACTCACATAACTTACATAATTTATA
1 GAACTTACATAACTCACATAACTTACATAATTTACA
*
101468566 TG-ACTTACATAACTCACATAACTCACATAATTTACA
1 -GAACTTACATAACTCACATAACTTACATAATTTACA
* ***
101468602 GAACTTACATAATTTTTATAACTTACATAAT
1 GAACTTACATAACTCACATAACTTACATAAT
101468633 ACATAAATAG
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
35 1 0.02
36 56 0.97
37 1 0.02
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.35
Consensus pattern (36 bp):
GAACTTACATAACTCACATAACTTACATAATTTACA
Found at i:101471725 original size:346 final size:346
Alignment explanation
Indices: 101471092--101471771 Score: 1234
Period size: 346 Copynumber: 2.0 Consensus size: 346
101471082 TCGATGGATG
* *
101471092 TATCCTATAGAAAGGTACTAATTTATTTGTCAAGTATTCATGCATTCACCTTTATACATTTAGTT
1 TATCCTATAGAAAGGTACTAATTTATTTGTCAAATATTCATGCATTCACCTCTATACATTTAGTT
*
101471157 ACAGCTTTTGATAAATATTGTATATCGTGTTTAGATTCCTAAGCAAATTGAAGTCTTATTATCGC
66 ACAGATTTTGATAAATATTGTATATCGTGTTTAGATTCCTAAGCAAATTGAAGTCTTATTATCGC
* *
101471222 AATAAGCGTTATCCAGAAGGATCAATTGCTGAAGGCTACTTGGTAGAGGACTACATGACCTTCTG
131 AATAAGCATTATCCAGAAGGATCAATTGCTGAAGGCTACTTGGCAGAGGACTACATGACCTTCTG
101471287 TTCTAGATATTTAGAAGATGTTGAAACACGATTGAATAGACCAAGTAGAAATGCTGGGCTCAATG
196 TTCTAGATATTTAGAAGATGTTGAAACACGATTGAATAGACCAAGTAGAAATGCTGGGCTCAATG
*
101471352 ATCATAACTTGGCTGAAACTTATTTATTCCAAAGTTATGGAGAACCAATCGGCAAAGTTGAAATT
261 ATCATAACTTGGCCGAAACTTATTTATTCCAAAGTTATGGAGAACCAATCGGCAAAGTTGAAATT
101471417 GCAGAATTATAGAGGTGAATA
326 GCAGAATTATAGAGGTGAATA
* * *
101471438 TATCCTATAGAAATGTGCTAATTTATTTGTCAAATATTCATTCATTCACCTCTATACATTTAGTT
1 TATCCTATAGAAAGGTACTAATTTATTTGTCAAATATTCATGCATTCACCTCTATACATTTAGTT
*
101471503 ACAGATTTTGATAAATATTGTATATCGTGTTTAGGTTCCTAAGCAAATTGAAGTCTTATTATCGC
66 ACAGATTTTGATAAATATTGTATATCGTGTTTAGATTCCTAAGCAAATTGAAGTCTTATTATCGC
* * *
101471568 AATAAGCATTATCCAGAAGGATCAATTGCTGAAGGCTACTTGGCAGAGGAGTGCATGACCTTTTG
131 AATAAGCATTATCCAGAAGGATCAATTGCTGAAGGCTACTTGGCAGAGGACTACATGACCTTCTG
*
101471633 TTCTAGATATTTAGAAGATGTTGAAACACGATTGAATAGACCAAGTAGAAATGTTGGGCTCAATG
196 TTCTAGATATTTAGAAGATGTTGAAACACGATTGAATAGACCAAGTAGAAATGCTGGGCTCAATG
101471698 ATCATAACTTGGCCGAAACTTATTTATTCCAAAGTTATGGAGAACCAATCGGCAAAGTTGAAATT
261 ATCATAACTTGGCCGAAACTTATTTATTCCAAAGTTATGGAGAACCAATCGGCAAAGTTGAAATT
101471763 GCAGAATTA
326 GCAGAATTA
101471772 GATGATATAT
Statistics
Matches: 320, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
346 320 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.33
Consensus pattern (346 bp):
TATCCTATAGAAAGGTACTAATTTATTTGTCAAATATTCATGCATTCACCTCTATACATTTAGTT
ACAGATTTTGATAAATATTGTATATCGTGTTTAGATTCCTAAGCAAATTGAAGTCTTATTATCGC
AATAAGCATTATCCAGAAGGATCAATTGCTGAAGGCTACTTGGCAGAGGACTACATGACCTTCTG
TTCTAGATATTTAGAAGATGTTGAAACACGATTGAATAGACCAAGTAGAAATGCTGGGCTCAATG
ATCATAACTTGGCCGAAACTTATTTATTCCAAAGTTATGGAGAACCAATCGGCAAAGTTGAAATT
GCAGAATTATAGAGGTGAATA
Found at i:101474804 original size:31 final size:31
Alignment explanation
Indices: 101474768--101474833 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
101474758 TGTATTTTTT
*
101474768 ATGCTACATTTGCTATTTTTGGTTGGATTTC
1 ATGCTACATTTGCTATTTTTGGTTGGATTTA
* *
101474799 ATGCTATATTTGCTGTTTTTGGTTGGATTTA
1 ATGCTACATTTGCTATTTTTGGTTGGATTTA
101474830 ATGC
1 ATGC
101474834 AGGAAGGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.17, C:0.11, G:0.21, T:0.52
Consensus pattern (31 bp):
ATGCTACATTTGCTATTTTTGGTTGGATTTA
Found at i:101476238 original size:25 final size:25
Alignment explanation
Indices: 101476201--101476251 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
101476191 TTTTTCAATG
*
101476201 AGGAACAAGGCTAAACAATGGTTGA
1 AGGAACAACGCTAAACAATGGTTGA
*
101476226 AGGAACAACGCTAAACAGTGGTTGA
1 AGGAACAACGCTAAACAATGGTTGA
101476251 A
1 A
101476252 CTCGTTACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.43, C:0.14, G:0.27, T:0.16
Consensus pattern (25 bp):
AGGAACAACGCTAAACAATGGTTGA
Found at i:101480254 original size:19 final size:20
Alignment explanation
Indices: 101480221--101480260 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
101480211 GGGATTTTCG
* *
101480221 TAATTTTTGAGAATTTGGTA
1 TAATTTTTGAAAATTAGGTA
101480241 TAATTTTT-AAAATTAGGTA
1 TAATTTTTGAAAATTAGGTA
101480260 T
1 T
101480261 TTGGTTGTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (20 bp):
TAATTTTTGAAAATTAGGTA
Found at i:101481894 original size:25 final size:25
Alignment explanation
Indices: 101481866--101481914 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
101481856 TTAAAATATG
* *
101481866 AAAAATAACTATTTTGCCCCTAGGT
1 AAAAATAACTATTATACCCCTAGGT
*
101481891 AAAAATGACTATTATACCCCTAGG
1 AAAAATAACTATTATACCCCTAGG
101481915 GTTAAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (25 bp):
AAAAATAACTATTATACCCCTAGGT
Found at i:101481977 original size:11 final size:11
Alignment explanation
Indices: 101481951--101482015 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
101481941 ATTTTGATAT
101481951 ACATGATATG-
1 ACATGATATGC
101481961 ACATGATATGC
1 ACATGATATGC
101481972 ACATGATATG-
1 ACATGATATGC
** *
101481982 TTATGAGATGC
1 ACATGATATGC
*
101481993 ACATGATATAC
1 ACATGATATGC
* *
101482004 TCATTATATGC
1 ACATGATATGC
101482015 A
1 A
101482016 TAGGTTGGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 17 0.40
11 25 0.60
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:101481977 original size:21 final size:21
Alignment explanation
Indices: 101481951--101482001 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
101481941 ATTTTGATAT
*
101481951 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
**
101481972 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
101481993 ACATGATAT
1 ACATGATAT
101482002 ACTCATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:101482013 original size:32 final size:31
Alignment explanation
Indices: 101481953--101482013 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
101481943 TTTGATATAC
* *
101481953 ATGATATGACATGATATGCACATGATATGTT
1 ATGAGATGACATGATATACACATGATATGTT
* *
101481984 ATGAGATGCACATGATATACTCATTATATG
1 ATGAGATG-ACATGATATACACATGATATG
101482014 CATAGGTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (31 bp):
ATGAGATGACATGATATACACATGATATGTT
Found at i:101482105 original size:24 final size:25
Alignment explanation
Indices: 101482049--101482106 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
101482039 AGGAAGTGCG
*
101482049 AAAAG-GGCTTTGCCCCATTTTACC
1 AAAAGAGGCTTTGCCCCATGTTACC
* **
101482073 AAAAAAGGCTTTGCCCCA-GTTATT
1 AAAAGAGGCTTTGCCCCATGTTACC
101482097 AAAAGAGGCT
1 AAAAGAGGCT
101482107 AGGCCTCCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 16 0.57
25 12 0.43
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCATGTTACC
Found at i:101488743 original size:22 final size:22
Alignment explanation
Indices: 101488717--101488758 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
101488707 AAACCAAACC
*
101488717 ACTACTCTCTTTCTTTTCATCT
1 ACTACTCCCTTTCTTTTCATCT
101488739 ACTACTCCCTTTCTTTTCAT
1 ACTACTCCCTTTCTTTTCAT
101488759 TACCCTTGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.33, G:0.00, T:0.52
Consensus pattern (22 bp):
ACTACTCCCTTTCTTTTCATCT
Found at i:101489760 original size:25 final size:25
Alignment explanation
Indices: 101489726--101489774 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
101489716 TTAAAATATG
* * *
101489726 AAAAATGACTGTTTTGCCCCTAGGT
1 AAAAATGACTATTATACCCCTAGGT
101489751 AAAAATGACTATTATACCCCTAGG
1 AAAAATGACTATTATACCCCTAGG
101489775 GTTAAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (25 bp):
AAAAATGACTATTATACCCCTAGGT
Found at i:101489837 original size:11 final size:11
Alignment explanation
Indices: 101489811--101489875 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
101489801 ATTTTGATAT
101489811 ACATGATATG-
1 ACATGATATGC
101489821 ACATGATATGC
1 ACATGATATGC
101489832 ACATGATATG-
1 ACATGATATGC
** *
101489842 TTATGAGATGC
1 ACATGATATGC
*
101489853 ACATGATATAC
1 ACATGATATGC
* *
101489864 TCATTATATGC
1 ACATGATATGC
101489875 A
1 A
101489876 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 17 0.40
11 25 0.60
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:101489837 original size:21 final size:21
Alignment explanation
Indices: 101489811--101489861 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
101489801 ATTTTGATAT
*
101489811 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
**
101489832 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
101489853 ACATGATAT
1 ACATGATAT
101489862 ACTCATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:101489873 original size:32 final size:31
Alignment explanation
Indices: 101489813--101489873 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
101489803 TTTGATATAC
* *
101489813 ATGATATGACATGATATGCACATGATATGTT
1 ATGAGATGACATGATATACACATGATATGTT
* *
101489844 ATGAGATGCACATGATATACTCATTATATG
1 ATGAGATG-ACATGATATACACATGATATG
101489874 CATGGGTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (31 bp):
ATGAGATGACATGATATACACATGATATGTT
Found at i:101489966 original size:25 final size:25
Alignment explanation
Indices: 101489909--101489960 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
101489899 GGAAGTGCGG
* *
101489909 AAAGGGTTTTGTCCCAATTTACCAA
1 AAAGGGCTTTGCCCCAATTTACCAA
*
101489934 AAAGGGCTTTGCCCCAGTTTACCAA
1 AAAGGGCTTTGCCCCAATTTACCAA
101489959 AA
1 AA
101489961 GAGGCTAGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAATTTACCAA
Found at i:101499126 original size:15 final size:15
Alignment explanation
Indices: 101499106--101499138 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
101499096 AGACTATTTT
101499106 ATTTATATTAGGATA
1 ATTTATATTAGGATA
101499121 ATTTATATTAGGATA
1 ATTTATATTAGGATA
101499136 ATT
1 ATT
101499139 ATTAGGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (15 bp):
ATTTATATTAGGATA
Found at i:101500097 original size:12 final size:12
Alignment explanation
Indices: 101500080--101500112 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
101500070 CTACTTCCTC
101500080 TTTACTATTATT
1 TTTACTATTATT
*
101500092 TTTACTGTTATT
1 TTTACTATTATT
101500104 TTTACTATT
1 TTTACTATT
101500113 TTACAGGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.21, C:0.09, G:0.03, T:0.67
Consensus pattern (12 bp):
TTTACTATTATT
Found at i:101502899 original size:14 final size:14
Alignment explanation
Indices: 101502880--101502913 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
101502870 CAACCCAATT
*
101502880 TTTATTTTATTTTA
1 TTTATTTTATCTTA
101502894 TTTATTTTATCTTA
1 TTTATTTTATCTTA
101502908 -TTATTT
1 TTTATTT
101502914 ATTATTTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTTATCTTA
Found at i:101503822 original size:100 final size:100
Alignment explanation
Indices: 101503644--101503823 Score: 281
Period size: 100 Copynumber: 1.8 Consensus size: 100
101503634 TAATTTCTAA
* *
101503644 GAATGTGTTGGGCTGAGTAACCGAGGTAAGGTGCTTGGGTTGTCATCTCTCTTCGCGTCAAAAGG
1 GAATGTGCTGGGCTGAGTAACCGAGGTAAGGTGCTTGGGTTGTCATCTCTCTTCACGTCAAAAGG
* *
101503709 TTCAATATGTTCCTAGGAATAATAAAAAAAATTAG
66 TACAATATATTCCTAGGAATAATAAAAAAAATTAG
**
101503744 GAATGTGCTGGGCTGAGTAACCG-GGATGGGGTGCTTGGGTTGTCATCTCTCTTCACGTCAAAAG
1 GAATGTGCTGGGCTGAGTAACCGAGG-TAAGGTGCTTGGGTTGTCATCTCTCTTCACGTCAAAAG
*
101503808 GTACAGTATATTCCTA
65 GTACAATATATTCCTA
101503824 AGTAAAAATA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
99 2 0.03
100 70 0.97
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (100 bp):
GAATGTGCTGGGCTGAGTAACCGAGGTAAGGTGCTTGGGTTGTCATCTCTCTTCACGTCAAAAGG
TACAATATATTCCTAGGAATAATAAAAAAAATTAG
Found at i:101503882 original size:9 final size:9
Alignment explanation
Indices: 101503859--101503896 Score: 58
Period size: 10 Copynumber: 4.0 Consensus size: 9
101503849 AATTCTATAA
101503859 AAAAAGAAAG
1 AAAAA-AAAG
101503869 AAAAAGAAAG
1 AAAAA-AAAG
101503879 AAAAAAAAG
1 AAAAAAAAG
101503888 AAAAAAAAG
1 AAAAAAAAG
101503897 TCATATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
9 13 0.46
10 15 0.54
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:101505451 original size:12 final size:12
Alignment explanation
Indices: 101505434--101505463 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
101505424 TTACTTCGCC
101505434 TTTACTGTTATT
1 TTTACTGTTATT
101505446 TTTACTGTTATT
1 TTTACTGTTATT
101505458 TTTACT
1 TTTACT
101505464 ATTTTACAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.10, G:0.07, T:0.67
Consensus pattern (12 bp):
TTTACTGTTATT
Found at i:101506118 original size:47 final size:47
Alignment explanation
Indices: 101505964--101506122 Score: 135
Period size: 47 Copynumber: 3.4 Consensus size: 47
101505954 TCATTTACTT
* ** * * * *
101505964 ACCAATGGTTTAT-CACAACATATTTTAGTCAATAGCCATCTGC-TC
1 ACCAGTGGTTTATCCACAATGTATTTTAGTCGACAGTCATCTGCTTA
* * * * * * * *
101506009 ACTAGTGTTTTATCTATC-ATGTACTCTAGTTGACAGATCATTTGCTCA
1 ACCAGTGGTTTATCCA-CAATGTATTTTAGTCGACAG-TCATCTGCTTA
*
101506057 ACCAGTGGTTTATCCACAATGTATTTTAGTCGACAGTCATCTGCTTG
1 ACCAGTGGTTTATCCACAATGTATTTTAGTCGACAGTCATCTGCTTA
101506104 ACCAGTGGTTTATCCACAA
1 ACCAGTGGTTTATCCACAA
101506123 CGTGTTAGAA
Statistics
Matches: 85, Mismatches: 24, Indels: 8
0.73 0.21 0.07
Matches are distributed among these distances:
45 10 0.12
46 12 0.14
47 35 0.41
48 28 0.33
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (47 bp):
ACCAGTGGTTTATCCACAATGTATTTTAGTCGACAGTCATCTGCTTA
Found at i:101512471 original size:15 final size:17
Alignment explanation
Indices: 101512441--101512472 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
101512431 TTGATACTTG
101512441 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
101512458 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
101512473 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:101513725 original size:17 final size:19
Alignment explanation
Indices: 101513691--101513738 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 19
101513681 TATAATATCA
101513691 TATAATACTATATCTTATAT
1 TATAATACTATA-CTTATAT
101513711 TATAAT-CTATA-TTATA-
1 TATAATACTATACTTATAT
101513727 -ATAATAGCTATA
1 TATAATA-CTATA
101513739 TATATAGTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 5 0.19
17 10 0.38
19 5 0.19
20 6 0.23
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (19 bp):
TATAATACTATACTTATAT
Found at i:101513823 original size:235 final size:229
Alignment explanation
Indices: 101513526--101513965 Score: 591
Period size: 233 Copynumber: 1.9 Consensus size: 229
101513516 ACTTATTATC
* * *
101513526 ATATATTATTGTTTATTATGCTAGTTAAAATATGCTCTAAGTCCTTATACGTTTCCTACATTTGA
1 ATATATTATTGTTTATTATACTAGTTAAAATATGCTATAAGTCCTCATAC-TTTCCTACATTTGA
* *
101513591 AAGTTAG-C-CCTTCTACTAGATTAGATAATGCTATATTATA-CAGTATATAATATATTAATAGT
65 AAGTTAGTCACC--CTACTAGATTAGATAATGCTATATCATATC---ATACAATATATTAATAGT
* * *
101513653 TTATATATATGCATCAATGATTAAATATTATAATATCATATAATACTATATCTTATATTATAATC
125 TTATATATATGCATCAATGATCAAACACTATAATATCATATAATACTATATCTTATATTATAATC
101513718 TATATTATAATAATAGCTATATATATAGTAGTAGTACATT
190 TATATTATAATAATAGCTATATATATAGTAGTAGTACATT
* **
101513758 ATATATTATTGTTTATTATTATACTAGTTGAAATATGCTATAAGTTCCTACATA-TTTGGTACAT
1 ATATATTATTG--T-TTATTATACTAGTTAAAATATGCTATAAG-TCCT-CATACTTTCCTACAT
* * *
101513822 TTGAAAGTTAGTCACCCTACTATATTATATAATGTTATATCATATCATACAATATATTAATAGTT
61 TTGAAAGTTAGTCACCCTACTAGATTAGATAATGCTATATCATATCATACAATATATTAATAGTT
* * * *
101513887 TATATATATGCATCGATGATCAAACACTATAATATCGTATACTACTATATCTTTTATTATAATCT
126 TATATATATGCATCAATGATCAAACACTATAATATCATATAATACTATATCTTATATTATAATCT
101513952 ATATTATAATAATA
191 ATATTATAATAATA
101513966 ATTATGCTTG
Statistics
Matches: 182, Mismatches: 18, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
232 11 0.06
233 90 0.49
234 1 0.01
235 69 0.38
236 6 0.03
237 5 0.03
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (229 bp):
ATATATTATTGTTTATTATACTAGTTAAAATATGCTATAAGTCCTCATACTTTCCTACATTTGAA
AGTTAGTCACCCTACTAGATTAGATAATGCTATATCATATCATACAATATATTAATAGTTTATAT
ATATGCATCAATGATCAAACACTATAATATCATATAATACTATATCTTATATTATAATCTATATT
ATAATAATAGCTATATATATAGTAGTAGTACATT
Found at i:101518513 original size:57 final size:57
Alignment explanation
Indices: 101518449--101518562 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
101518439 ACGATGTGAA
*
101518449 ATGAAAGATAAAACTTTTGTGTTGAACTAAAAGGAGATGCAAATACAAGCTAAACCG
1 ATGAAAGATAAAACTTTTGTGTTGAACTAAAAAGAGATGCAAATACAAGCTAAACCG
*
101518506 ATGAAAGATAAAACTTTTGTGTTGAATTAAAAAGAGATGCAAATACAAGCTAAACCG
1 ATGAAAGATAAAACTTTTGTGTTGAACTAAAAAGAGATGCAAATACAAGCTAAACCG
101518563 CACAAGAAGT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.46, C:0.11, G:0.18, T:0.24
Consensus pattern (57 bp):
ATGAAAGATAAAACTTTTGTGTTGAACTAAAAAGAGATGCAAATACAAGCTAAACCG
Found at i:101519162 original size:18 final size:19
Alignment explanation
Indices: 101519139--101519174 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
101519129 ACTTTACCCA
101519139 CAATAATATCAC-CACAAG
1 CAATAATATCACACACAAG
101519157 CAATAATATCACACACAA
1 CAATAATATCACACACAA
101519175 AATGATACCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.53, C:0.28, G:0.03, T:0.17
Consensus pattern (19 bp):
CAATAATATCACACACAAG
Found at i:101527403 original size:6 final size:6
Alignment explanation
Indices: 101527394--101527418 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
101527384 ATATATGTGT
101527394 GTGCGC GTGCGC GTGCGC GTGCGC G
1 GTGCGC GTGCGC GTGCGC GTGCGC G
101527419 CGAGCGCGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.52, T:0.16
Consensus pattern (6 bp):
GTGCGC
Found at i:101527883 original size:48 final size:48
Alignment explanation
Indices: 101527809--101527907 Score: 180
Period size: 48 Copynumber: 2.1 Consensus size: 48
101527799 TACAATGAGT
101527809 AAACCTAAATCTATCATACTCATGACAATTTCCTCATTTTTGTATCCC
1 AAACCTAAATCTATCATACTCATGACAATTTCCTCATTTTTGTATCCC
* *
101527857 AAACCTAAATCTATCATACTCGTGACAATTTCCTCATTTTTGTATCTC
1 AAACCTAAATCTATCATACTCATGACAATTTCCTCATTTTTGTATCCC
101527905 AAA
1 AAA
101527908 AGATTGATAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.37
Consensus pattern (48 bp):
AAACCTAAATCTATCATACTCATGACAATTTCCTCATTTTTGTATCCC
Found at i:101529625 original size:8 final size:8
Alignment explanation
Indices: 101529612--101529646 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
101529602 TCACTAGTTT
101529612 AAAACATC
1 AAAACATC
101529620 AAAACATC
1 AAAACATC
*
101529628 AAAATATC
1 AAAACATC
101529636 AAAACATC
1 AAAACATC
101529644 AAA
1 AAA
101529647 TACTTTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.66, C:0.20, G:0.00, T:0.14
Consensus pattern (8 bp):
AAAACATC
Found at i:101530392 original size:17 final size:17
Alignment explanation
Indices: 101530370--101530408 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
101530360 CTTTTTTTTT
* *
101530370 TCAATTTCATTTCCATA
1 TCAATTCCAATTCCATA
*
101530387 TCAATTCCAATTCCATT
1 TCAATTCCAATTCCATA
101530404 TCAAT
1 TCAAT
101530409 ATACAATCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.44
Consensus pattern (17 bp):
TCAATTCCAATTCCATA
Found at i:101530397 original size:23 final size:24
Alignment explanation
Indices: 101530371--101530415 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
101530361 TTTTTTTTTT
* *
101530371 CAATTTCATTTCCATAT-CAATTC
1 CAATTCCATTTCAATATACAATTC
101530394 CAATTCCATTTCAATATACAAT
1 CAATTCCATTTCAATATACAAT
101530416 CAATTCAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (24 bp):
CAATTCCATTTCAATATACAATTC
Found at i:101531632 original size:28 final size:28
Alignment explanation
Indices: 101531600--101531654 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
101531590 CAAGGCTGAC
101531600 TTTT-ATCT-CTTGATTTCAATTTCAATCT
1 TTTTAATCTACTTG-TTT-AATTTCAATCT
*
101531628 TTTTAATTTACTTGTTTAATTTCAATC
1 TTTTAATCTACTTGTTTAATTTCAATC
101531655 ATTTACTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 14 0.58
29 6 0.25
30 4 0.17
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTAATCTACTTGTTTAATTTCAATCT
Found at i:101543948 original size:19 final size:18
Alignment explanation
Indices: 101543915--101543968 Score: 58
Period size: 19 Copynumber: 3.0 Consensus size: 18
101543905 TAATATAATT
101543915 TACAA-ATAAAA-ATATA
1 TACAATATAAAATATATA
*
101543931 TAGCAATATAAATTATATAA
1 TA-CAATATAAAATATAT-A
*
101543951 TATAATATAAAATATATA
1 TACAATATAAAATATATA
101543969 ATATAATGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 2 0.06
17 3 0.10
18 6 0.19
19 17 0.55
20 3 0.10
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (18 bp):
TACAATATAAAATATATA
Found at i:101543955 original size:5 final size:5
Alignment explanation
Indices: 101543935--101543992 Score: 68
Period size: 5 Copynumber: 12.2 Consensus size: 5
101543925 AATATATAGC
* * *
101543935 AATAT AA-AT TATAT AATAT AATAT AAAAT -ATAT AATAT AATGT -ATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
101543982 AATAT AATAT A
1 AATAT AATAT A
101543993 TAAAAAAAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
4 9 0.20
5 35 0.80
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:101543987 original size:38 final size:38
Alignment explanation
Indices: 101543887--101544076 Score: 100
Period size: 38 Copynumber: 5.0 Consensus size: 38
101543877 AGAAGTATAG
* * *
101543887 TATAATATATATAGTGTATAATATAATTTACAAATAAAA-A
1 TATAATATA-AT-GTATATAATATAATATA-ATATAAAATA
* * * *
101543927 TAT-ATAGCAATATAAATTATATAATATAATATAAAATA
1 TATAATA-TAATGTATATAATATAATATAATATAAAATA
*
101543965 TATAATATAATGTATATAATATAATAT-ATA-AAAAAA
1 TATAATATAATGTATATAATATAATATAATATAAAATA
*
101544001 GTATTATGATAGATAGTA-A-AATATAATATGTAATA-AAAAT-
1 -TATAAT-ATA-AT-GTATATAATATAATA--TAATATAAAATA
101544041 TCATAA-ATAA---ATATAATGA-AATATAATATAAAATA
1 T-ATAATATAATGTATATAAT-ATAATATAATATAAAATA
101544076 T
1 T
101544077 GTATACTAAT
Statistics
Matches: 119, Mismatches: 15, Indels: 37
0.70 0.09 0.22
Matches are distributed among these distances:
33 6 0.05
34 6 0.05
35 8 0.07
36 6 0.05
37 16 0.13
38 47 0.39
39 12 0.10
40 11 0.09
41 7 0.06
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (38 bp):
TATAATATAATGTATATAATATAATATAATATAAAATA
Found at i:101543989 original size:14 final size:14
Alignment explanation
Indices: 101543936--101543994 Score: 75
Period size: 14 Copynumber: 4.2 Consensus size: 14
101543926 ATATATAGCA
*
101543936 ATATAA-ATTATAT
1 ATATAATATAATAT
*
101543949 AATATAATATAAAAT
1 -ATATAATATAATAT
*
101543964 ATATAATATAATGT
1 ATATAATATAATAT
101543978 ATATAATATAATAT
1 ATATAATATAATAT
101543992 ATA
1 ATA
101543995 AAAAAAGTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 34 0.87
15 5 0.13
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (14 bp):
ATATAATATAATAT
Found at i:101544145 original size:20 final size:20
Alignment explanation
Indices: 101544122--101544166 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
101544112 ATATAAAAAT
*
101544122 ATAATGAAATAAATAATATA
1 ATAAAGAAATAAATAATATA
* * *
101544142 ATAAAGAGATATATCATATA
1 ATAAAGAAATAAATAATATA
101544162 ATAAA
1 ATAAA
101544167 ATTTATATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (20 bp):
ATAAAGAAATAAATAATATA
Found at i:101546120 original size:21 final size:20
Alignment explanation
Indices: 101546080--101546126 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
101546070 ATAGAGGGTG
*
101546080 AAATAATGACATAAATAAAT
1 AAATAATGACATAAAAAAAT
101546100 AAATAGATGA-ATAAAGAAAAT
1 AAATA-ATGACATAAA-AAAAT
101546121 AAATAA
1 AAATAA
101546127 AAGGTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.21
Consensus pattern (20 bp):
AAATAATGACATAAAAAAAT
Found at i:101550476 original size:20 final size:20
Alignment explanation
Indices: 101550433--101550478 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
101550423 ACTGTTTTGT
*
101550433 TATGGG-CCAACTGTATTGA
1 TATGGGCCCAACTGTATTAA
* *
101550452 GATGGGCCCAACTGTGTTAA
1 TATGGGCCCAACTGTATTAA
101550472 TATGGGC
1 TATGGGC
101550479 AAGGCCCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (20 bp):
TATGGGCCCAACTGTATTAA
Found at i:101550572 original size:60 final size:62
Alignment explanation
Indices: 101550499--101550619 Score: 149
Period size: 60 Copynumber: 2.0 Consensus size: 62
101550489 ATATCTCGAC
*
101550499 TTGTAATAAGGCTACGACCCAGATTGACACTGATATGGGCT-AGGCCCAG-TATACTCTGATA
1 TTGTAATAAGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTA-ACTCTGATA
* * * * * *
101550560 TTGTAA-AGGGCTATGGCCTAGATTAATATTGATATGGGCTAAGGCCCAGTTAACTCTGAT
1 TTGTAATAAGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGAT
101550620 TTCTGAATAG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
60 27 0.53
61 22 0.43
62 2 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (62 bp):
TTGTAATAAGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGATA
Found at i:101554237 original size:50 final size:49
Alignment explanation
Indices: 101554102--101554240 Score: 201
Period size: 47 Copynumber: 2.9 Consensus size: 49
101554092 AGGTGGAAGT
*
101554102 AGTGGCAGTTTATCTACAAATCAGTGGTGGCTTGTCCACAAAGTATTTC
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTATTTC
* * * * *
101554151 AATGGCAGTATATCTGCATAT--GTGGTGGCTAGTCCACAAAGTGTTATC
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTATT-TC
101554199 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAA
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAA
101554241 TGGTGTTTCG
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
47 22 0.29
48 20 0.26
49 17 0.22
50 18 0.23
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (49 bp):
AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTATTTC
Found at i:101555542 original size:26 final size:24
Alignment explanation
Indices: 101555512--101555561 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
101555502 AAATAAAAAA
*
101555512 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
101555538 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
101555562 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:101561085 original size:29 final size:30
Alignment explanation
Indices: 101561034--101561095 Score: 101
Period size: 29 Copynumber: 2.1 Consensus size: 30
101561024 ATTTATTTTA
101561034 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
101561064 TTGTTAATTTT-TTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
101561093 TTG
1 TTG
101561096 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 18 0.58
30 13 0.42
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:101562917 original size:19 final size:19
Alignment explanation
Indices: 101562874--101562908 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
101562864 ATATTACATT
101562874 TTTA-TTATTTTATTTCTC
1 TTTATTTATTTTATTTCTC
101562892 TTTATTTATTTT-TTTCT
1 TTTATTTATTTTATTTCT
101562909 TTTCTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTATTTATTTTATTTCTC
Found at i:101563599 original size:21 final size:20
Alignment explanation
Indices: 101563567--101563607 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
101563557 ATTATTAGTA
* *
101563567 GTATATGTTTTATTATATAT
1 GTATATATTTTAATATATAT
101563587 GTATATATCTTTAATATATAT
1 GTATATAT-TTTAATATATAT
101563608 ATATGTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.56
Consensus pattern (20 bp):
GTATATATTTTAATATATAT
Found at i:101563722 original size:23 final size:25
Alignment explanation
Indices: 101563668--101563735 Score: 72
Period size: 23 Copynumber: 2.9 Consensus size: 25
101563658 ATGCATATAT
*
101563668 TATGTATATATTTTAATATTATTAG
1 TATGTATATATTTTAATACTATTAG
* *
101563693 T-TATATATCTTTT-ATACTATT-G
1 TATGTATATATTTTAATACTATTAG
*
101563715 TATGTATAT-TTCTAATACTAT
1 TATGTATATATTTTAATACTAT
101563736 ATTGTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
22 5 0.14
23 20 0.56
24 10 0.28
25 1 0.03
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (25 bp):
TATGTATATATTTTAATACTATTAG
Found at i:101563811 original size:9 final size:9
Alignment explanation
Indices: 101563799--101563858 Score: 57
Period size: 9 Copynumber: 6.2 Consensus size: 9
101563789 CGTATGTTTT
101563799 TTATATATA
1 TTATATATA
*
101563808 TTATTATCATT
1 TTA-TAT-ATA
*
101563819 TCTAAATATA
1 T-TATATATA
*
101563829 TGTATATATT
1 T-TATATATA
101563839 TTATATATA
1 TTATATATA
101563848 TTATATATA
1 TTATATATA
101563857 TT
1 TT
101563859 TTTAATGTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
9 21 0.51
10 13 0.32
11 5 0.12
12 2 0.05
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (9 bp):
TTATATATA
Found at i:101563847 original size:11 final size:11
Alignment explanation
Indices: 101563831--101563882 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
101563821 TAAATATATG
101563831 TATATATTTTA
1 TATATATTTTA
*
101563842 TATATATTATA
1 TATATATTTTA
101563853 TATAT-TTTTA
1 TATATATTTTA
* *
101563863 -ATGTTATTTTT
1 TAT-ATATTTTA
101563874 TATATATTT
1 TATATATTT
101563883 CTTTTACTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
9 2 0.06
10 5 0.15
11 24 0.73
12 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (11 bp):
TATATATTTTA
Found at i:101563861 original size:21 final size:21
Alignment explanation
Indices: 101563796--101563862 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
101563786 TAGCGTATGT
101563796 TTTTTATATATATTAT-TATCA
1 TTTTTATATATATTATATAT-A
* * *
101563817 TTTCTAAATATA-TGTATATA
1 TTTTTATATATATTATATATA
101563837 -TTTTATATATATTATATATA
1 TTTTTATATATATTATATATA
101563857 TTTTTA
1 TTTTTA
101563863 ATGTTATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
19 9 0.24
20 10 0.27
21 18 0.49
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TTTTTATATATATTATATATA
Found at i:101564227 original size:3 final size:3
Alignment explanation
Indices: 101564177--101564216 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
101564167 TACATACATC
101564177 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
101564217 ATGTTTATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:101564352 original size:25 final size:26
Alignment explanation
Indices: 101564311--101564406 Score: 87
Period size: 25 Copynumber: 3.9 Consensus size: 26
101564301 ATTATTGCTA
*
101564311 ATATGTATATATATA-TTTTAATAACT
1 ATAT-TATGTATATACTTTTAATAACT
* * *
101564337 ATATTATGTATGTATTTTTAA-CACT
1 ATATTATGTATATACTTTTAATAACT
*
101564362 ATTTTATGTATATACTTTTAAT-A-T
1 ATATTATGTATATACTTTTAATAACT
*
101564386 -TATTATGTATTTA-TTTTAATA
1 ATATTATGTATATACTTTTAATA
101564407 TATATGTACA
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
22 7 0.12
23 11 0.19
24 1 0.02
25 30 0.51
26 10 0.17
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.55
Consensus pattern (26 bp):
ATATTATGTATATACTTTTAATAACT
Found at i:101564420 original size:20 final size:22
Alignment explanation
Indices: 101564320--101564421 Score: 84
Period size: 25 Copynumber: 4.4 Consensus size: 22
101564310 AATATGTATA
101564320 TATATATTTTAATAACTATATTATG
1 TATATATTTTAAT-A-T-TATTATG
*
101564345 TATGTATTTTTAACACTATT-TTATG
1 TATATA-TTTT-A-A-TATTATTATG
101564370 TATATACTTTTAATATTATTATG
1 TATATA-TTTTAATATTATTATG
*
101564393 TATTTATTTTAATA-TA-TATG
1 TATATATTTTAATATTATTATG
*
101564413 TACATATTT
1 TATATATTT
101564422 ATGTAGTATT
Statistics
Matches: 66, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
20 11 0.17
21 2 0.03
22 12 0.18
23 11 0.17
24 1 0.02
25 19 0.29
26 5 0.08
27 2 0.03
28 2 0.03
29 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (22 bp):
TATATATTTTAATATTATTATG
Found at i:101564420 original size:24 final size:22
Alignment explanation
Indices: 101564377--101564441 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
101564367 ATGTATATAC
**
101564377 TTTTAATATTATTATGTATTTA
1 TTTTAATATTATTACATATTTA
101564399 TTTTAATATATATGTACATATTTA
1 TTTTAATAT-TAT-TACATATTTA
* *
101564423 -TGTAGTATTATTA-ATATTT
1 TTTTAATATTATTACATATTT
101564442 TTTATGTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
20 6 0.16
21 2 0.05
22 12 0.32
23 9 0.24
24 8 0.22
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (22 bp):
TTTTAATATTATTACATATTTA
Found at i:101564491 original size:13 final size:13
Alignment explanation
Indices: 101564475--101564543 Score: 72
Period size: 13 Copynumber: 5.3 Consensus size: 13
101564465 ATGTTCATTT
101564475 TATATATATTATG
1 TATATATATTATG
101564488 TATATATATTATG
1 TATATATATTATG
*
101564501 TATATATA-TATT
1 TATATATATTATG
*
101564513 TAGTAT-TATATATT
1 TA-TATATAT-TATG
101564527 TAGTAT-TATTATG
1 TA-TATATATTATG
101564540 TATA
1 TATA
101564544 CACTTTTCAT
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
12 9 0.18
13 29 0.57
14 13 0.25
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (13 bp):
TATATATATTATG
Found at i:101564768 original size:23 final size:23
Alignment explanation
Indices: 101564738--101564831 Score: 170
Period size: 23 Copynumber: 4.1 Consensus size: 23
101564728 TATTATTGTC
101564738 ATATTTATTATTTGCTTCGATGT
1 ATATTTATTATTTGCTTCGATGT
101564761 ATATTTATTATTTGCTTCGATGT
1 ATATTTATTATTTGCTTCGATGT
* *
101564784 ATATTTATTATTTGCTTCTATTT
1 ATATTTATTATTTGCTTCGATGT
101564807 ATATTTATTATTTGCTTCGATGT
1 ATATTTATTATTTGCTTCGATGT
101564830 AT
1 AT
101564832 TTCTAACTCT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.22, C:0.09, G:0.11, T:0.59
Consensus pattern (23 bp):
ATATTTATTATTTGCTTCGATGT
Found at i:101568455 original size:22 final size:22
Alignment explanation
Indices: 101568430--101568474 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
101568420 ATTCATGACT
101568430 AACATTCATTCGTCATTTATTC
1 AACATTCATTCGTCATTTATTC
*
101568452 AACATTCATTTGTCATTTATTC
1 AACATTCATTCGTCATTTATTC
101568474 A
1 A
101568475 TTCATCCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.47
Consensus pattern (22 bp):
AACATTCATTCGTCATTTATTC
Found at i:101576947 original size:27 final size:27
Alignment explanation
Indices: 101576906--101576983 Score: 147
Period size: 27 Copynumber: 2.9 Consensus size: 27
101576896 AATGTGAAAG
*
101576906 GGGGTTGCTATGTGCTGATTCCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCCGA
101576933 GGGGTTGCTAAGTGCTGATTCCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCCGA
101576960 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
101576984 GGTTCATTGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.13, C:0.26, G:0.33, T:0.28
Consensus pattern (27 bp):
GGGGTTGCTAAGTGCTGATTCCCCCGA
Found at i:101577062 original size:131 final size:131
Alignment explanation
Indices: 101576828--101577078 Score: 407
Period size: 131 Copynumber: 1.9 Consensus size: 131
101576818 TGTATATAAA
** * *
101576828 AGGGGTTGCTGTGTGCTAATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTAATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
101576893 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCC
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCC
101576958 G
131 G
* * *
101576959 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTAATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
101577023 TTGAAATGTGAAAGGGGGTTTGCTATGTGCTGATT-CCCCGAGGGGTTGCTAAGTGC
65 TTGAAATGTGAAAGGGGG-TTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGC
101577079 GATATCCATT
Statistics
Matches: 111, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
131 94 0.85
132 17 0.15
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (131 bp):
AGGGGTTGCTAAGTGCTAATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCC
G
Found at i:101577145 original size:71 final size:72
Alignment explanation
Indices: 101576997--101577148 Score: 236
Period size: 72 Copynumber: 2.1 Consensus size: 72
101576987 TCATTGGTGG
* *
101576997 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTTGCTATGTGCTGATTCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTTGCTATGTGCTGATTCCCC
101577062 GAGGGGT
66 GAGGGGT
***
101577069 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGG-TTGCTATGTGCTGATTCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTTGCTATGTGCTGATT-CCC
101577132 CGAGGGGT
65 CGAGGGGT
101577140 TGCTAAGTG
1 TGCTAAGTG
101577149 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
70 16 0.22
71 28 0.38
72 30 0.41
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTTGCTATGTGCTGATTCCCC
GAGGGGT
Found at i:101584404 original size:104 final size:104
Alignment explanation
Indices: 101584224--101584447 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
101584214 TGTATATAAA
** * *
101584224 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
101584289 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
101584328 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
101584392 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
101584432 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
101584448 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:101584499 original size:71 final size:72
Alignment explanation
Indices: 101584366--101584517 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
101584356 TCATTGGTGG
* *
101584366 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
101584431 GAGGGGT
66 GAGGGGT
***
101584438 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
101584502 GAGGGGT
66 GAGGGGT
101584509 TGCTAAGTG
1 TGCTAAGTG
101584518 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:101586946 original size:75 final size:74
Alignment explanation
Indices: 101586768--101587046 Score: 343
Period size: 75 Copynumber: 3.7 Consensus size: 74
101586758 TTCTGTTTTC
* * *
101586768 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACGCGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAATTT
* *
101586832 CT-ATCTTTCA
66 CTGTTC-AT-A
*
101586842 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTT-AATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGT-ATTTTCAATT
101586905 TCTGTTCATAAA
65 TCTGTTCAT--A
* *
101586917 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--CACACGCTGAGGTATTTTCAAT
* *
101586981 TTCTGTTCGTC
64 TTCTGTTCATA
* *
101586992 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGCCACATGCTGAGGT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCTGAGGT
101587047 CTCTCCAAAT
Statistics
Matches: 180, Mismatches: 17, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
74 59 0.33
75 90 0.50
76 7 0.04
77 24 0.13
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAATTT
CTGTTCATA
Found at i:101587031 original size:150 final size:149
Alignment explanation
Indices: 101586768--101587046 Score: 395
Period size: 150 Copynumber: 1.9 Consensus size: 149
101586758 TTCTGTTTTC
* *
101586768 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAACACGCG-TGAGGTATTTTCAATTTC
*
101586833 TATCTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG-ACACGCTGAGGTAA
65 TATCTGTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGCACACGCTGAGGTAA
101586897 TTTTAATTTCTGTTCATAAA
130 TTTTAATTTCTGTTCATAAA
*
101586917 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGC-TGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC-T--C-AACACGCGTGAGGTATTTTCAAT
* * * *
101586981 TTCTGT-TCGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGCCACATGCTGA
62 TTCTATCT-GTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG-CACACGCTGA
101587044 GGT
125 GGT
101587047 CTCTCCAAAT
Statistics
Matches: 115, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
149 35 0.30
150 41 0.36
151 22 0.19
152 12 0.10
153 5 0.04
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (149 bp):
AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAACACGCGTGAGGTATTTTCAATTTCT
ATCTGTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGCACACGCTGAGGTAAT
TTTAATTTCTGTTCATAAA
Found at i:101588126 original size:18 final size:17
Alignment explanation
Indices: 101588103--101588140 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
101588093 ATATTACATT
101588103 TTTA-TTATTTTCTTTCTC
1 TTTATTTATTTT-TTTC-C
101588121 TTTATTTATTTTTTTCC
1 TTTATTTATTTTTTTCC
101588138 TTT
1 TTT
101588141 TCTGTTTTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 8 0.42
19 7 0.37
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTTATTTTTTTCC
Found at i:101588788 original size:17 final size:17
Alignment explanation
Indices: 101588766--101588817 Score: 88
Period size: 17 Copynumber: 3.1 Consensus size: 17
101588756 ATTACTTTTA
101588766 ATATTATTATTATTATT
1 ATATTATTATTATTATT
101588783 ATATTATTATTATTA-T
1 ATATTATTATTATTATT
101588799 ATTATTATTATTATTATT
1 A-TATTATTATTATTATT
101588817 A
1 A
101588818 GTATATGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
16 2 0.06
17 29 0.88
18 2 0.06
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
ATATTATTATTATTATT
Found at i:101588789 original size:14 final size:14
Alignment explanation
Indices: 101588770--101588817 Score: 87
Period size: 14 Copynumber: 3.4 Consensus size: 14
101588760 CTTTTAATAT
101588770 TATTATTATTATTA
1 TATTATTATTATTA
101588784 TATTATTATTATTA
1 TATTATTATTATTA
101588798 TATTATTATTATTA
1 TATTATTATTATTA
101588812 TTATTA
1 -TATTA
101588818 GTATATGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
14 28 0.85
15 5 0.15
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TATTATTATTATTA
Found at i:101588833 original size:3 final size:3
Alignment explanation
Indices: 101588767--101588817 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
101588757 TTACTTTTAA
101588767 TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
101588813 TAT TA
1 TAT TA
101588818 GTATATGTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 4 0.09
3 42 0.91
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:101589102 original size:9 final size:9
Alignment explanation
Indices: 101589083--101589124 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
101589073 TCATTTCTAA
101589083 ATATA-TGT
1 ATATATTGT
101589091 ATATATTGT
1 ATATATTGT
*
101589100 ATATATTTT
1 ATATATTGT
*
101589109 ATATATTAT
1 ATATATTGT
101589118 ATATATT
1 ATATATT
101589125 TTTAATGTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 5 0.16
9 26 0.84
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (9 bp):
ATATATTGT
Found at i:101589107 original size:29 final size:27
Alignment explanation
Indices: 101589058--101589124 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 27
101589048 AATAGTTTTT
101589058 TTATATATATTATTATCATTTCTAAATA
1 TTATATATATTATTATCATTT-TAAATA
* * *
101589086 TATGTATATATTGTATAT-ATTTTATATA
1 T-TATATATATTAT-TATCATTTTAAATA
101589114 TTATATATATT
1 TTATATATATT
101589125 TTTAATGTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
27 9 0.27
28 7 0.21
29 14 0.42
30 3 0.09
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (27 bp):
TTATATATATTATTATCATTTTAAATA
Found at i:101589135 original size:18 final size:18
Alignment explanation
Indices: 101589058--101589126 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 18
101589048 AATAGTTTTT
101589058 TTATATATATTATTATCAT-
1 TTATATATATT-TTAT-ATA
* * *
101589077 TTCTAAATATATGTATATA
1 TTATATATAT-TTTATATA
*
101589096 TTGTATATATTTTATATA
1 TTATATATATTTTATATA
101589114 TTATATATATTTT
1 TTATATATATTTT
101589127 TAATGTTATT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
18 21 0.51
19 19 0.46
20 1 0.02
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (18 bp):
TTATATATATTTTATATA
Found at i:101589226 original size:22 final size:22
Alignment explanation
Indices: 101589201--101589245 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
101589191 CATATTCTTG
* *
101589201 AATACTATGTTATATATATATT
1 AATACCATATTATATATATATT
*
101589223 AATACCATATTATGTATATATT
1 AATACCATATTATATATATATT
101589245 A
1 A
101589246 TTATATCTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (22 bp):
AATACCATATTATATATATATT
Found at i:101589449 original size:3 final size:3
Alignment explanation
Indices: 101589441--101589486 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
101589431 TACATACATC
101589441 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
101589487 ATAGTAGTAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:101589494 original size:3 final size:3
Alignment explanation
Indices: 101589488--101589513 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
101589478 TATTATTATA
101589488 TAG TAG TAG TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TA
101589514 TATGTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
TAG
Found at i:101589563 original size:21 final size:21
Alignment explanation
Indices: 101589511--101589563 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
101589501 AGTAGTAGTA
** *
101589511 GTATATGTTTATTATATATGT
1 GTATATGTTTAACATATATAT
* *
101589532 ATATATCTTTAACATATATAT
1 GTATATGTTTAACATATATAT
101589553 GTATATGTTTA
1 GTATATGTTTA
101589564 TGCAGTATTA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.34, C:0.04, G:0.09, T:0.53
Consensus pattern (21 bp):
GTATATGTTTAACATATATAT
Found at i:101589654 original size:23 final size:21
Alignment explanation
Indices: 101589593--101589717 Score: 78
Period size: 23 Copynumber: 5.7 Consensus size: 21
101589583 GTTTTGTAAC
101589593 ATTAT-TAT-TATTTCTAATAT
1 ATTATGTATATATTT-TAATAT
* * *
101589613 -GTATATATATATTAATAACTAT
1 ATTATGTATATATT-TTAA-TAT
*
101589635 ATTATGTATGTATTTTTAACACTAT
1 ATTATGTATATA-TTTT-A-A-TAT
*
101589660 TTTATGTATATACTTTTAATATT
1 ATTATGTATATA-TTTTAATA-T
*
101589683 ATTATGTATTTATTTTAATAT
1 ATTATGTATATATTTTAATAT
*
101589704 A-TATGTACATATTT
1 ATTATGTATATATTT
101589718 ATGTAGTATT
Statistics
Matches: 83, Mismatches: 13, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
19 3 0.04
20 14 0.17
21 9 0.11
22 13 0.16
23 21 0.25
24 4 0.05
25 19 0.23
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (21 bp):
ATTATGTATATATTTTAATAT
Found at i:101589716 original size:20 final size:22
Alignment explanation
Indices: 101589610--101589717 Score: 78
Period size: 25 Copynumber: 4.6 Consensus size: 22
101589600 TTATTTCTAA
101589610 TATGTATATATATATTAATAACTATAT
1 TATGTATATAT-T-TTAAT-A-T-TAT
*
101589637 TATGTATGTATTTTTAACACTATT-T
1 TATGTATATA-TTTT-A-A-TATTAT
101589662 TATGTATATACTTTTAATATTAT
1 TATGTATATA-TTTTAATATTAT
*
101589685 TATGTATTTATTTTAATA-TA-
1 TATGTATATATTTTAATATTAT
*
101589705 TATGTACATATTT
1 TATGTATATATTT
101589718 ATGTAGTATT
Statistics
Matches: 70, Mismatches: 6, Indels: 17
0.75 0.06 0.18
Matches are distributed among these distances:
20 11 0.16
21 2 0.03
22 12 0.17
23 11 0.16
24 1 0.01
25 14 0.20
26 3 0.04
27 12 0.17
28 3 0.04
29 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.06, T:0.55
Consensus pattern (22 bp):
TATGTATATATTTTAATATTAT
Found at i:101589716 original size:24 final size:22
Alignment explanation
Indices: 101589673--101589735 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
101589663 ATGTATATAC
**
101589673 TTTTAATATTATTATGTATTTA
1 TTTTAATATTATTACATATTTA
101589695 TTTTAATATATATGTACATATTTA
1 TTTTAATAT-TAT-TACATATTTA
* *
101589719 -TGTAGTATTATTA-ATAT
1 TTTTAATATTATTACATAT
101589736 ATATATATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
20 4 0.11
21 2 0.06
22 12 0.34
23 9 0.26
24 8 0.23
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (22 bp):
TTTTAATATTATTACATATTTA
Found at i:101601877 original size:6 final size:7
Alignment explanation
Indices: 101601843--101601953 Score: 50
Period size: 7 Copynumber: 16.0 Consensus size: 7
101601833 AGGTTCGAAA
101601843 TTTAAGG
1 TTTAAGG
101601850 TTTAAGG
1 TTTAAGG
*
101601857 TTT-GGG
1 TTTAAGG
101601863 TTTCAAGG
1 TTT-AAGG
101601871 TTT-AGG
1 TTTAAGG
** *
101601877 TCGAGGG
1 TTTAAGG
101601884 TTTAAGG
1 TTTAAGG
* *
101601891 ATTTGAGA
1 -TTTAAGG
*
101601899 TTTAGGG
1 TTTAAGG
*
101601906 TTTGA-G
1 TTTAAGG
*
101601912 TTTAAAG
1 TTTAAGG
101601919 TTTAAGGG
1 TTTAA-GG
* *
101601927 CTTGAGG
1 TTTAAGG
*
101601934 TTT-GGG
1 TTTAAGG
*
101601940 TTTAGGG
1 TTTAAGG
101601947 TTTAAGG
1 TTTAAGG
101601954 ATTTGGAGTT
Statistics
Matches: 75, Mismatches: 22, Indels: 14
0.68 0.20 0.13
Matches are distributed among these distances:
6 19 0.25
7 42 0.56
8 14 0.19
ACGTcount: A:0.22, C:0.03, G:0.35, T:0.41
Consensus pattern (7 bp):
TTTAAGG
Found at i:101601888 original size:41 final size:43
Alignment explanation
Indices: 101601825--101601908 Score: 102
Period size: 41 Copynumber: 2.0 Consensus size: 43
101601815 CCTTGAACCC
*
101601825 CAAGGTTTAGGTTCGAAATTTAAGG-TTTAAGGTTT-GGGTTT
1 CAAGGTTTAGGTTCGAAATTTAAGGATTTAAGATTTAGGGTTT
** *
101601866 CAAGGTTTAGG-TCGAGGGTTTAAGGATTTGAGATTTAGGGTTT
1 CAAGGTTTAGGTTCGA-AATTTAAGGATTTAAGATTTAGGGTTT
101601909 GAGTTTAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
40 4 0.11
41 18 0.50
42 8 0.22
43 6 0.17
ACGTcount: A:0.24, C:0.05, G:0.32, T:0.39
Consensus pattern (43 bp):
CAAGGTTTAGGTTCGAAATTTAAGGATTTAAGATTTAGGGTTT
Found at i:101601922 original size:35 final size:35
Alignment explanation
Indices: 101601883--101601951 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
101601873 TAGGTCGAGG
*
101601883 GTTTAAGGATTTGAGATTTAGGGTTT-GAGTTTAAA
1 GTTTAAGGACTTGAGATTT-GGGTTTAGAGTTTAAA
* * *
101601918 GTTTAAGGGCTTGAGGTTTGGGTTTAGGGTTTAA
1 GTTTAAGGACTTGAGATTTGGGTTTAGAGTTTAA
101601952 GGATTTGGAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 6 0.21
35 23 0.79
ACGTcount: A:0.23, C:0.01, G:0.33, T:0.42
Consensus pattern (35 bp):
GTTTAAGGACTTGAGATTTGGGTTTAGAGTTTAAA
Found at i:101605553 original size:42 final size:42
Alignment explanation
Indices: 101605464--101605605 Score: 158
Period size: 42 Copynumber: 3.4 Consensus size: 42
101605454 TTTTTTTTTA
**
101605464 AAAAACGCCGCTAAAGATTGTGACCTTCAGCGGCGCTTTCCCC
1 AAAAACGCCGCTAAA-AACGTGACCTTCAGCGGCGCTTTCCCC
* * *
101605507 AAAAACGCCGCTAAAAACGTGATCTTTAGCGGCGCTTTCCCT
1 AAAAACGCCGCTAAAAACGTGACCTTCAGCGGCGCTTTCCCC
** * * ***
101605549 AAAAACGCCGCTAAAAATATAACCTTTAGTAACGCTTTCCCC
1 AAAAACGCCGCTAAAAACGTGACCTTCAGCGGCGCTTTCCCC
*
101605591 AAGAACGCCGCTAAA
1 AAAAACGCCGCTAAA
101605606 GACCATATAT
Statistics
Matches: 85, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 70 0.82
43 15 0.18
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (42 bp):
AAAAACGCCGCTAAAAACGTGACCTTCAGCGGCGCTTTCCCC
Found at i:101606107 original size:23 final size:23
Alignment explanation
Indices: 101606081--101606182 Score: 150
Period size: 23 Copynumber: 4.4 Consensus size: 23
101606071 ACACAAAGAA
*
101606081 CATTTAAACACTTTAATTTACAG
1 CATTTAAACACTTCAATTTACAG
* * * *
101606104 CATTTAAATACTTTAGTTTACAA
1 CATTTAAACACTTCAATTTACAG
*
101606127 CATTTAAACACTTCAATTTATAG
1 CATTTAAACACTTCAATTTACAG
101606150 CATTTAAACACTTCAATTTACAG
1 CATTTAAACACTTCAATTTACAG
101606173 CATTTAAACA
1 CATTTAAACA
101606183 GCAGCAACCA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 70 1.00
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (23 bp):
CATTTAAACACTTCAATTTACAG
Found at i:101609380 original size:64 final size:64
Alignment explanation
Indices: 101609306--101609482 Score: 204
Period size: 64 Copynumber: 2.8 Consensus size: 64
101609296 CAGGAAACTA
101609306 GAAAACTAATATAATAG-AAATAAGAAACCCAAACAAAAAAAAATCAAAAATTTCTAAGACGATT
1 GAAAACTAATATAATAGAAAATAAGAAACCCAAACAAAAAAAAATCAAAAATTT-TAAGACGATT
** * *
101609370 GAAAACTAATATAATAGAAAATAAGAAACCC-AA-ATTAAAAATTCTAAAATTTTAAGACGATT
1 GAAAACTAATATAATAGAAAATAAGAAACCCAAACAAAAAAAAATCAAAAATTTTAAGACGATT
* * * *
101609432 GAAAAATAA-AGAA-AGTAAATTTCAACAAACCCAAAC-AAAAAAAATCAAAAA
1 GAAAACTAATATAATAG-AAA-AT-AAGAAACCCAAACAAAAAAAAATCAAAAA
101609483 CCTCACATAC
Statistics
Matches: 95, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
60 2 0.02
61 6 0.06
62 19 0.20
63 23 0.24
64 32 0.34
65 13 0.14
ACGTcount: A:0.62, C:0.12, G:0.07, T:0.19
Consensus pattern (64 bp):
GAAAACTAATATAATAGAAAATAAGAAACCCAAACAAAAAAAAATCAAAAATTTTAAGACGATT
Found at i:101609472 original size:62 final size:61
Alignment explanation
Indices: 101609339--101609482 Score: 141
Period size: 63 Copynumber: 2.3 Consensus size: 61
101609329 GAAACCCAAA
* * *
101609339 CAAAAAAAAATCAAAAATTTCTAAGACGATTGAAAACTAATATAATAGAAAATAAGAAACC
1 CAAAAAAAAATCAAAAATTTCTAAGACGATTGAAAAATAATAGAATAGAAAATAACAAACC
* * *
101609400 CAAATTAAAAATTCTAAAATTT-TAAGACGATTGAAAAATAA-AGAA-AGTAAATTTCAACAAAC
1 CAAA--AAAAAATCAAAAATTTCTAAGACGATTGAAAAATAATAGAATAG-AAA-AT-AACAAAC
101609462 C
61 C
101609463 CAAACAAAAAAAATCAAAAA
1 C--A-AAAAAAAATCAAAAA
101609483 CCTCACATAC
Statistics
Matches: 67, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
60 2 0.03
61 10 0.15
62 19 0.28
63 22 0.33
64 11 0.16
65 1 0.01
66 2 0.03
ACGTcount: A:0.61, C:0.12, G:0.07, T:0.20
Consensus pattern (61 bp):
CAAAAAAAAATCAAAAATTTCTAAGACGATTGAAAAATAATAGAATAGAAAATAACAAACC
Found at i:101610503 original size:15 final size:15
Alignment explanation
Indices: 101610465--101610516 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
101610455 CTTAAACCCC
* *
101610465 AACCCTTAAACCATA
1 AACCCATAATCCATA
* *
101610480 AA-TCATAATCCCTA
1 AACCCATAATCCATA
101610494 AACCCATAATCCATA
1 AACCCATAATCCATA
101610509 AACCCATA
1 AACCCATA
101610517 TTTCATTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
14 10 0.33
15 20 0.67
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:101610588 original size:23 final size:19
Alignment explanation
Indices: 101610541--101610603 Score: 99
Period size: 19 Copynumber: 3.3 Consensus size: 19
101610531 TTGTATTTCA
*
101610541 TTTTTATTTGTTATCAATG
1 TTTTTATTTATTATCAATG
101610560 TTTTTATTTATTATCAATG
1 TTTTTATTTATTATCAATG
*
101610579 TTTTTATTTATTTATCAATA
1 TTTTTATTTA-TTATCAATG
101610599 TTTTT
1 TTTTT
101610604 TAAATCTAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
19 28 0.68
20 13 0.32
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.67
Consensus pattern (19 bp):
TTTTTATTTATTATCAATG
Found at i:101611014 original size:21 final size:21
Alignment explanation
Indices: 101610980--101611019 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
101610970 CCTTTAACCC
*
101610980 ATAAACCCTAAATCTTAAAAT
1 ATAAACCCTAAATCCTAAAAT
* *
101611001 ATAAACTCTTAATCCTAAA
1 ATAAACCCTAAATCCTAAA
101611020 CCCCTAACCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (21 bp):
ATAAACCCTAAATCCTAAAAT
Found at i:101611054 original size:14 final size:15
Alignment explanation
Indices: 101611025--101611057 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
101611015 CTAAACCCCT
101611025 AACCCCTAAACTTTA
1 AACCCCTAAACTTTA
*
101611040 AACCCC-AACCTTTA
1 AACCCCTAAACTTTA
101611054 AACC
1 AACC
101611058 ATAATCCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCCCTAAACTTTA
Found at i:101611429 original size:41 final size:41
Alignment explanation
Indices: 101611367--101611545 Score: 250
Period size: 41 Copynumber: 4.4 Consensus size: 41
101611357 GTTATATGAC
* *
101611367 TTTTAACGGCGTTTTATCGAAAACGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAACGCCGCTAATGCTCTGGT
* * * *
101611408 TTTTAGCAGCGTTTTACCGAAAGCGACACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAACGCCGCTAATGCTCTGGT
* * * *
101611449 TTTTAGCGGCGTTTTACCGAAAGCACAGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTACCGAAAACGCCGCTAATGCTCTGGT
* *
101611490 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAACGCCGCTAATGCTCTGGT
101611531 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
101611546 TGGTAAAAAG
Statistics
Matches: 120, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 120 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAACGCCGCTAATGCTCTGGT
Found at i:101611576 original size:41 final size:41
Alignment explanation
Indices: 101611367--101611575 Score: 222
Period size: 41 Copynumber: 5.1 Consensus size: 41
101611357 GTTATATGAC
* * * *
101611367 TTTTAACGGCGTTTTATCGAAAACGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
* * * * * *
101611408 TTTTAGCAGCGTTTTACCGAAAGCGACACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
* * * * * *
101611449 TTTTAGCGGCGTTTTACCGAAAGCACAGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
101611490 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
***
101611531 TTTTAGCGGCGTTTTTGGTAAAAA-GCCGCTATTGCTCTGTGT
1 TTTTAGCGGCG-TTTTACCAAAAACGCCGCTATTGCTCTG-GT
101611573 TTT
1 TTT
101611576 ACAATTTTTG
Statistics
Matches: 145, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
41 131 0.90
42 14 0.10
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
Found at i:101611576 original size:82 final size:82
Alignment explanation
Indices: 101611367--101611575 Score: 253
Period size: 82 Copynumber: 2.5 Consensus size: 82
101611357 GTTATATGAC
* * * *
101611367 TTTTAACGGCGTTTTATCGAAAACGCCGCTAATGCTCTGGTTTTTAGCAGCGTTTTACCGAAAGC
1 TTTTAGCGGCGTTTTATCGAAAAAGCCGCTAATGCTCTGGTTTTTAGCAGCGTTTTACCAAAAAC
101611432 GACACTAATGCTCTGGT
66 GACACTAATGCTCTGGT
* * *
101611449 TTTTAGCGGCGTTTTACCG--AAAGCACAGCTAATGCTTTGGTTTTTAGCGGCGTTTTACCAAAA
1 TTTTAGCGGCGTTTTATCGAAAAAGC-C-GCTAATGCTCTGGTTTTTAGCAGCGTTTTACCAAAA
* * *
101611512 ACGCCGCTATTGCTCTGGT
64 ACGACACTAATGCTCTGGT
* *
101611531 TTTTAGCGGCGTTTT-TGGTAAAAAGCCGCTATTGCTCTGTGTTTT
1 TTTTAGCGGCGTTTTATCG-AAAAAGCCGCTAATGCTCTG-GTTTT
101611576 ACAATTTTTG
Statistics
Matches: 107, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
80 4 0.04
81 2 0.02
82 90 0.84
83 6 0.06
84 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.36
Consensus pattern (82 bp):
TTTTAGCGGCGTTTTATCGAAAAAGCCGCTAATGCTCTGGTTTTTAGCAGCGTTTTACCAAAAAC
GACACTAATGCTCTGGT
Found at i:101615112 original size:31 final size:30
Alignment explanation
Indices: 101615077--101615148 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 30
101615067 AAAATATTAT
*
101615077 AAAAACAAATAAT-GAACAAATAA-AAAGTAGA
1 AAAAACAAA-AATAAAACAAATAATAAAG-A-A
*
101615108 AAAAAGAAAAATAAAACAAATAATAAAGAA
1 AAAAACAAAAATAAAACAAATAATAAAGAA
*
101615138 AAAAAGAAAAA
1 AAAAACAAAAA
101615149 GGACAAATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
30 15 0.41
31 18 0.49
32 4 0.11
ACGTcount: A:0.78, C:0.04, G:0.08, T:0.10
Consensus pattern (30 bp):
AAAAACAAAAATAAAACAAATAATAAAGAA
Found at i:101621051 original size:22 final size:22
Alignment explanation
Indices: 101621023--101621089 Score: 125
Period size: 22 Copynumber: 3.0 Consensus size: 22
101621013 CCGAAAAAGG
101621023 TAAATTTTATAATAAAATTATT
1 TAAATTTTATAATAAAATTATT
101621045 TAAATTTTATAATAAAATTATT
1 TAAATTTTATAATAAAATTATT
*
101621067 TAAATTTTACAATAAAATTATT
1 TAAATTTTATAATAAAATTATT
101621089 T
1 T
101621090 GATCAAAGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (22 bp):
TAAATTTTATAATAAAATTATT
Found at i:101627557 original size:22 final size:22
Alignment explanation
Indices: 101627523--101627586 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
101627513 TCAACATTTT
*
101627523 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
101627545 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
101627566 AATTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
101627587 CATTAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:101627580 original size:15 final size:16
Alignment explanation
Indices: 101627560--101627591 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
101627550 ATATATAATA
101627560 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
101627575 ATATAAAAATTACATT
1 ATATAAAAATTACATT
101627591 A
1 A
101627592 AAAATCACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:101627852 original size:113 final size:114
Alignment explanation
Indices: 101627648--101628089 Score: 687
Period size: 114 Copynumber: 3.9 Consensus size: 114
101627638 ATACTAACAC
* * * *
101627648 AAAATAACTATAAAATTATTTTTTT-AAATACATTACTAAAAAAAATCACAATACACTAACACAA
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACT-AAAAAAATCACAATACACTAATAC--
101627712 ACTAAACCACTAAACACTAACAA--TATATAACCTAATCTTAAATTACTAAT
63 ACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
101627762 AAAATAGCTATAAAAATA-TTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
* * *
101627826 AAACCACTAAACACTAACAATTTATATAATCTAACCTTAAATTACAAAT
66 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* *
101627875 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACATTAATACACT
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
*
101627940 AAACCACTAAACACTAAGAATTTATA-AACCTAATCTTAAATTACTAAT
66 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* *
101627988 AAAATAGCTATAAAATTATTTTTTTAAAAATATATTACTAAAAAAATCACAATACATTAATACAC
1 AAAATAGCTATAAAAATATTTTTTT-AAAATATATTACTAAAAAAATCACAATACACTAATACAC
* *
101628053 TAAACTACTAAACATTAACAATTTATATAACCTAATC
65 TAAACCACTAAACACTAACAATTTATATAACCTAATC
101628090 AACTATAAAA
Statistics
Matches: 304, Mismatches: 18, Indels: 11
0.91 0.05 0.03
Matches are distributed among these distances:
111 23 0.08
113 114 0.38
114 158 0.52
115 9 0.03
ACGTcount: A:0.53, C:0.15, G:0.01, T:0.31
Consensus pattern (114 bp):
AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
Found at i:101632337 original size:21 final size:22
Alignment explanation
Indices: 101632299--101632342 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
101632289 ATTCTTATAC
101632299 TACTATTTATATACATTATTAG
1 TACTATTTATATACATTATTAG
101632321 TACTATTT-T-TACTATTATTAG
1 TACTATTTATATAC-ATTATTAG
101632342 T
1 T
101632343 TTACCATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 3 0.14
21 10 0.48
22 8 0.38
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.55
Consensus pattern (22 bp):
TACTATTTATATACATTATTAG
Found at i:101632888 original size:126 final size:128
Alignment explanation
Indices: 101632719--101633023 Score: 332
Period size: 129 Copynumber: 2.4 Consensus size: 128
101632709 AGCATAAGGA
* ** * *
101632719 AATATTTCGTGTTTGGAAGTTTGAGAAATCGCGTTCAATCGTGCTAGGTTAC-AACTTTT-TCAT
1 AATATTTCGTGTTTGGAAGTTTGAGAAATCGTGCCCAATCGTGCTGGGTTACTAACTTTTCTCAA
** * *
101632782 TCAACT-GAACTATGGAATATCCTTGTGAGATCTT-AT-TCATGTTTTCTTAAATTAAAATGAGG
66 TCAACTAGAA-TACAGAATATCCTTGTGAAAT-TTCATCT-ATGTTTCCTTAAATTAAAATGAGG
101632844 C
128 C
* * * * ***
101632845 GATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCTTTTTTTTTCTCA
1 AATATTTCGTGTTTGGAAGTTTGAGAAATCGTGCCCAATCGTGCTGGGTTAC-TAACTTTTCTCA
* *
101632910 ATCGACTAGAATACAGAATATCCTTTTGAAATTTCATCTATGTTTCCTTAAATTAAAATGAGGC
65 ATCAACTAGAATACAGAATATCCTTGTGAAATTTCATCTATGTTTCCTTAAATTAAAATGAGGC
* * * * *
101632974 AATGTTTCGTATTTGGAAATTCGATAAATCGTGCCCAATCGTGCTGGGTT
1 AATATTTCGTGTTTGGAAGTTTGAGAAATCGTGCCCAATCGTGCTGGGTT
101633024 TCGATTTACC
Statistics
Matches: 147, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
126 44 0.30
128 6 0.04
129 93 0.63
130 4 0.03
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (128 bp):
AATATTTCGTGTTTGGAAGTTTGAGAAATCGTGCCCAATCGTGCTGGGTTACTAACTTTTCTCAA
TCAACTAGAATACAGAATATCCTTGTGAAATTTCATCTATGTTTCCTTAAATTAAAATGAGGC
Found at i:101643237 original size:64 final size:65
Alignment explanation
Indices: 101643111--101643239 Score: 154
Period size: 64 Copynumber: 2.0 Consensus size: 65
101643101 CATTCATAAT
* * * * *
101643111 ACATCTAGTTAAGAGCATTTGATTCATTTTTTGATCGTAGCATCCTAATTATTTGACATAAGCAT
1 ACATCTAGCTAAGAGCAGTTGATTCA-TTTTCGATCATAGCATCCTAACTATTTGACATAAGCAT
101643176 C
65 C
* * *
101643177 ACATCTAGCTAGGAGCGGTTGATTCA-TTTCGATCATAGTATCCTAACTATTT-AGCATAAGCAT
1 ACATCTAGCTAAGAGCAGTTGATTCATTTTCGATCATAGCATCCTAACTATTTGA-CATAAGCAT
101643240 AGACACATGA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
63 1 0.02
64 31 0.57
66 22 0.41
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (65 bp):
ACATCTAGCTAAGAGCAGTTGATTCATTTTCGATCATAGCATCCTAACTATTTGACATAAGCATC
Found at i:101643463 original size:88 final size:88
Alignment explanation
Indices: 101643311--101643474 Score: 274
Period size: 88 Copynumber: 1.9 Consensus size: 88
101643301 AGTTGCGAGC
* * *
101643311 CTTAACCCCCTAAGCAGTAGGGTAATAGGCTAAAAATTATAGATCTTATCTCCATGTATCGGCTA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATATTATCTCCATGTATCGGCTA
101643376 TGGAGCAGATTTTAGCCACAAGT
66 TGGAGCAGATTTTAGCCACAAGT
* * *
101643399 CTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATATTATCTCCATGTATTGGCTA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATATTATCTCCATGTATCGGCTA
101643464 TGGAGCAGATT
66 TGGAGCAGATT
101643475 AAAGATTGCG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 70 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (88 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATATTATCTCCATGTATCGGCTA
TGGAGCAGATTTTAGCCACAAGT
Found at i:101643724 original size:133 final size:133
Alignment explanation
Indices: 101643531--101643804 Score: 422
Period size: 133 Copynumber: 2.1 Consensus size: 133
101643521 TAGCCACCGA
* * *
101643531 CCTTATCTCCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTAACCCCCCAAGCAGTAG
1 CCTTATCTCCCTAAGGTAGCAAGAGAGCAGGCTGAAGATACAAGCCTTAACCCCCCAAGCAGTAG
* *
101643596 GGTAACAGACTGAAAATTACAGATCTTATCTCTATGTATCGGCTATGGAGCAGATCAAAAATGGC
66 GGTAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGA
101643661 AAG
131 AAG
* * * *
101643664 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGCTGGAGATACGAGCCTTAACCCCCTAAGCAGTAG
1 CCTTATCTCCCTAAGGTAGCAAGAGAGCAGGCTGAAGATACAAGCCTTAACCCCCCAAGCAGTAG
* * * *
101643729 GGTAACAGTCTGAAAATTATAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGA
66 GGTAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGA
101643794 AAG
131 AAG
*
101643797 TCTTATCT
1 CCTTATCT
101643805 TCATGTATCG
Statistics
Matches: 127, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 127 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (133 bp):
CCTTATCTCCCTAAGGTAGCAAGAGAGCAGGCTGAAGATACAAGCCTTAACCCCCCAAGCAGTAG
GGTAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGA
AAG
Found at i:101643921 original size:310 final size:310
Alignment explanation
Indices: 101643399--101643981 Score: 914
Period size: 310 Copynumber: 1.9 Consensus size: 310
101643389 AGCCACAAGT
* *
101643399 CTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATATTATCTCCATGTATTGGCTA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATATTATCTCCATGTATCGGCTA
* * ** * * *
101643464 TGGAGCAGATTAAAGATTGCGAGTCTTATGTCCATGTATCGGCTATGGAGCAGATTTTAGCCACC
66 TGGAGCAGATCAAAGATGGAAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAACCACC
*
101643529 GACCTTATCTCCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTAACCCCCCAAGCAGT
131 GACCTTATCTCCCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTAACCCCCCAAGCAGT
*
101643594 AGGGTAACAGACTGAAAATTACAGATCTTATCTCTATGTATCGGCTATGGAGCAGATCAAAAATG
196 AGGGTAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATG
*
101643659 GCAAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGCTGGAGATACGAGC
261 GAAAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGCTGGAGATACGAGC
* * *
101643709 CTTAACCCCCTAAGCAGTAGGGTAACAGTCTGAAAATTATAGATCTTATCTCCATGTATCGGCTA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATATTATCTCCATGTATCGGCTA
* * *
101643774 TGGAGCAGATCGAAGATGGAAAGTCTTATCTTCATGTATCGGCTATGGAGCATATTTAAACCACC
66 TGGAGCAGATCAAAGATGGAAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAACCACC
* * * *
101643839 GGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCCCTAAGCAGT
131 GACCTTATCTCCCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTAACCCCCCAAGCAGT
* * * * *
101643904 AGTGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCGAAGATG
196 AGGGTAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATG
*
101643969 GAAAGTCTTATCT
261 GAAAGCCTTATCT
101643982 TCATGTATCG
Statistics
Matches: 245, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
310 245 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (310 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATATTATCTCCATGTATCGGCTA
TGGAGCAGATCAAAGATGGAAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAACCACC
GACCTTATCTCCCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTAACCCCCCAAGCAGT
AGGGTAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATG
GAAAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGCTGGAGATACGAGC
Found at i:101644156 original size:310 final size:310
Alignment explanation
Indices: 101643840--101644452 Score: 917
Period size: 310 Copynumber: 2.0 Consensus size: 310
101643830 TAAACCACCG
*
101643840 GCCTTATCTCTCT-AAGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCCCTAAGCAGT
1 GCCTTATCTCTCTGAA-GTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGT
* ** * * *
101643904 AGTGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCGAAGATG
65 AGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCAGCTATAGAGCAAATCGAAAATG
* * *
101643969 GAAAGTCTTATCTTCATGTATCGGCTATGGAGCATATTTAAACCACCGGCCTTATCTCTCTAAGG
130 GAAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTAAACCACCGGCCTTATCTCTCTAAGG
* * * *
101644034 TAGCAAGAGAGCAGGTTGAAGATACGAG-TCTTAACCCCCTAAGCAGTAGTGCAACAGGCTGAAA
195 TAGCAAGAGAGCAGGTTGAACATACGGGCT-TTAACCCCCTAAGCAGTAGGGCAACAGGATGAAA
* ** *
101644098 ATTGCAGATCTTATCTCCATGTATTGGCTATGGAGCAGATC-GAAAATGGCGA
259 ATTACAGATCTTATCTCCATGTACCGGCTAT-GAGCAAATCAGAAAATGGCGA
* *
101644150 GCCTTATCTTTTTGAAGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGTA
1 GCCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGTA
*
101644215 GGGTAACAGGCTGAAAATTGCAGATCTTATCTCCATGTATCAGCTATAGAGCAAATCGAAAATGG
66 GGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCAGCTATAGAGCAAATCGAAAATGG
** * *
101644280 CGAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTAAGCCACCGGCCTTATCTCTCTGAGGT
131 AAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTAAACCACCGGCCTTATCTCTCTAAGGT
* * * *
101644345 AGCAAGATAGTAGGTTGAACATACGGGCTTTAACCCCCTAGGCAGTAGGGTAACAGGATGAAAAT
196 AGCAAGAGAGCAGGTTGAACATACGGGCTTTAACCCCCTAAGCAGTAGGGCAACAGGATGAAAAT
101644410 TACAGATCTTATCTCCATGTACCGGCTATGAGCAAATCAGAAA
261 TACAGATCTTATCTCCATGTACCGGCTATGAGCAAATCAGAAA
101644453 GGGCAAATCT
Statistics
Matches: 271, Mismatches: 29, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
309 8 0.03
310 260 0.96
311 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (310 bp):
GCCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGTA
GGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCAGCTATAGAGCAAATCGAAAATGG
AAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTAAACCACCGGCCTTATCTCTCTAAGGT
AGCAAGAGAGCAGGTTGAACATACGGGCTTTAACCCCCTAAGCAGTAGGGCAACAGGATGAAAAT
TACAGATCTTATCTCCATGTACCGGCTATGAGCAAATCAGAAAATGGCGA
Done.