Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 314 of 343
Found at i:101644159 original size:177 final size:177
Alignment explanation
Indices: 101643663--101644146 Score: 878
Period size: 177 Copynumber: 2.7 Consensus size: 177
101643653 AAAATGGCAA
* * *
101643663 GCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGCTGGAGATACGAGCCTTAACCCCCTAAGCAGTA
1 GCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCCCTAAGCAGTA
* * * *
101643728 GGGTAACAGTCTGAAAATTATAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGG
66 GTGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCGAAGATGG
101643793 AAAGTCTTATCTTCATGTATCGGCTATGGAGCATATTTAAACCACCG
131 AAAGTCTTATCTTCATGTATCGGCTATGGAGCATATTTAAACCACCG
101643840 GCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCCCTAAGCAGTA
1 GCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCCCTAAGCAGTA
101643905 GTGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCGAAGATGG
66 GTGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCGAAGATGG
101643970 AAAGTCTTATCTTCATGTATCGGCTATGGAGCATATTTAAACCACCG
131 AAAGTCTTATCTTCATGTATCGGCTATGGAGCATATTTAAACCACCG
101644017 GCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCCCTAAGCAGTA
1 GCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCCCTAAGCAGTA
* * *
101644082 GTGCAACAGGCTGAAAATTGCAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCGAAAATGG
66 GTGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCGAAGATGG
101644147 CGAGCCTTAT
Statistics
Matches: 297, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
177 297 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (177 bp):
GCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCCCTAAGCAGTA
GTGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCGAAGATGG
AAAGTCTTATCTTCATGTATCGGCTATGGAGCATATTTAAACCACCG
Found at i:101644178 original size:133 final size:133
Alignment explanation
Indices: 101644033--101644291 Score: 446
Period size: 133 Copynumber: 1.9 Consensus size: 133
101644023 TCTCTCTAAG
* *
101644033 GTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCCCTAAGCAGTAGTGCAACAGGCTGAAA
1 GTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAA
** * *
101644098 ATTGCAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCGAAAATGGCGAGCCTTATCTTTTT
66 ATTGCAGATCTTATCTCCATGTATCAGCTATAGAGCAAATCGAAAATGGCGAGCCTTATCTTTTT
101644163 GAA
131 GAA
*
101644166 GTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAA
1 GTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAA
*
101644231 ATTGCAGATCTTATCTCCATGTATCAGCTATAGAGCAAATCGAAAATGGCGAGTCTTATCT
66 ATTGCAGATCTTATCTCCATGTATCAGCTATAGAGCAAATCGAAAATGGCGAGCCTTATCT
101644292 CCATGTATCG
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
133 118 1.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24
Consensus pattern (133 bp):
GTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAA
ATTGCAGATCTTATCTCCATGTATCAGCTATAGAGCAAATCGAAAATGGCGAGCCTTATCTTTTT
GAA
Found at i:101644288 original size:487 final size:487
Alignment explanation
Indices: 101643396--101644448 Score: 1590
Period size: 487 Copynumber: 2.2 Consensus size: 487
101643386 TTTAGCCACA
* *
101643396 AGTCTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATATTATCTCCATGTATTGG
1 AGTCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTGG
* * ** * * *
101643461 CTATGGAGCAGATTAAAGATTGCGAGTCTTATGTCCATGTATCGGCTATGGAGCAGATTTTAGCC
66 CTATGGAGCAGATCAAAGATGGAAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAACC
*
101643526 ACCGACCTTATCTCCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTAACCCCCCAAGC
131 ACCGACCTTATCTCCCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTAACCCCCCAAGC
* *
101643591 AGTAGGGTAACAGACTGAAAATTACAGATCTTATCTCTATGTATCGGCTATGGAGCAGATCAAAA
196 AGTAGGGCAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAA
*
101643656 ATGGCAAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGCTGGAGATACGAGCCTTAACCCCCTA
261 ATGGCAAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGCTGAAGATACGAGCCTTAACCCCCTA
* * * * *
101643721 AGCAGTAGGGTAACAGTCTGAAAATTATAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCG
326 AGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCAGCTATAGAGCAAATCG
* * * *
101643786 AAGATGGAAAGTCTTATCTTCATGTATCGGCTATGGAGCATATTTAAACCACCGGCCTTATCTCT
391 AAAATGGAAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTAAACCACCGGCCTTATCTCT
*
101643851 CTAAGGTAGCAAGAGAGCAGGTTGAAGATACG
456 CTAAGGTAGCAAGAGAGCAGGTTGAACATACG
*
101643883 AGTCTTAACCCCCTAAGCAGTAGTGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTGG
1 AGTCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTGG
* * *
101643948 CTATGGAGCAGATCGAAGATGGAAAGTCTTATCTTCATGTATCGGCTATGGAGCATATTTAAACC
66 CTATGGAGCAGATCAAAGATGGAAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAACC
* * * *
101644013 ACCGGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCCCTAAGC
131 ACCGACCTTATCTCCCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTAACCCCCCAAGC
* * * * *
101644078 AGTAGTGCAACAGGCTGAAAATTGCAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCGAAA
196 AGTAGGGCAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAA
* * * *
101644143 ATGGCGAGCCTTATCTTTTTGAA-GTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCT
261 ATGGCAAGCCTTATCTCTCT-AAGGTAGCAAGAGAGCAGGCTGAAGATACGAGCCTTAACCCCCT
*
101644207 AAGCAGTAGGGTAACAGGCTGAAAATTGCAGATCTTATCTCCATGTATCAGCTATAGAGCAAATC
325 AAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCAGCTATAGAGCAAATC
** *
101644272 GAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTAAGCCACCGGCCTTATCTC
390 GAAAATGGAAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTAAACCACCGGCCTTATCTC
* * *
101644337 TCTGAGGTAGCAAGATAGTAGGTTGAACATACG
455 TCTAAGGTAGCAAGAGAGCAGGTTGAACATACG
* * * **
101644370 -GGCTTTAACCCCCTAGGCAGTAGGGTAACAGGATGAAAATTACAGATCTTATCTCCATGTACCG
1 AGTC-TTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTG
*
101644434 GCTAT-GAGCAAATCA
65 GCTATGGAGCAGATCA
101644449 GAAAGGGCAA
Statistics
Matches: 509, Mismatches: 55, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
486 10 0.02
487 497 0.98
488 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (487 bp):
AGTCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATTGG
CTATGGAGCAGATCAAAGATGGAAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAACC
ACCGACCTTATCTCCCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTAACCCCCCAAGC
AGTAGGGCAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAA
ATGGCAAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGCTGAAGATACGAGCCTTAACCCCCTA
AGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCAGCTATAGAGCAAATCG
AAAATGGAAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTAAACCACCGGCCTTATCTCT
CTAAGGTAGCAAGAGAGCAGGTTGAACATACG
Found at i:101648984 original size:17 final size:17
Alignment explanation
Indices: 101648962--101648995 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
101648952 AACGCTAAGG
*
101648962 GCTAAATTTGTTAATAT
1 GCTAAATTTGTCAATAT
101648979 GCTAAATTTGTCAATAT
1 GCTAAATTTGTCAATAT
101648996 ACTTTTAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (17 bp):
GCTAAATTTGTCAATAT
Found at i:101650198 original size:62 final size:62
Alignment explanation
Indices: 101650126--101650245 Score: 188
Period size: 62 Copynumber: 1.9 Consensus size: 62
101650116 TCATTGCGTT
* *
101650126 ATGGTTCTTAAGATGCTATTGCATTTGAATTGAGTTATGAAA-ATTTGAGATTAATGGTAGTG
1 ATGGTACTTAAGATGCTATTGCATTTGAACTGAGTT-TGAAAGATTTGAGATTAATGGTAGTG
* *
101650188 ATGGTACTTAAGATGCTATTGCATTTGAACTGAGTTTTAAAGATTTGTGATTAATGGT
1 ATGGTACTTAAGATGCTATTGCATTTGAACTGAGTTTGAAAGATTTGAGATTAATGGT
101650246 TCATTGTATG
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
61 4 0.08
62 49 0.92
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.41
Consensus pattern (62 bp):
ATGGTACTTAAGATGCTATTGCATTTGAACTGAGTTTGAAAGATTTGAGATTAATGGTAGTG
Found at i:101651735 original size:23 final size:23
Alignment explanation
Indices: 101651707--101651753 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
101651697 TTGACTATTA
*
101651707 AAATAAAATGTTATTAAAGGATT
1 AAATAAAATATTATTAAAGGATT
*
101651730 AAATAAAATATTATTAGAGGATT
1 AAATAAAATATTATTAAAGGATT
101651753 A
1 A
101651754 TCATACCGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (23 bp):
AAATAAAATATTATTAAAGGATT
Found at i:101651911 original size:24 final size:22
Alignment explanation
Indices: 101651858--101651934 Score: 61
Period size: 24 Copynumber: 3.4 Consensus size: 22
101651848 ATTGAAATAT
*
101651858 TTTTAATAATAATTTTATATTAAA
1 TTTTATTAATAA--TTATATTAAA
*
101651882 TATTATTAATAATTATATTAAGAA
1 TTTTATTAATAATTATATT-A-AA
*
101651906 TTTTATT-A-AATTATA-TATTA
1 TTTTATTAATAATTATATTA-AA
101651926 TTTTATTAA
1 TTTTATTAA
101651935 ATTGTATTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
20 9 0.20
21 2 0.04
22 14 0.31
23 2 0.04
24 18 0.40
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (22 bp):
TTTTATTAATAATTATATTAAA
Found at i:101661487 original size:30 final size:30
Alignment explanation
Indices: 101661429--101661487 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
101661419 AACACAATCC
* **
101661429 TTAATAGTTAGGTGACCCAATTATAACTTT
1 TTAATAGTTAGGTGACCAAACAATAACTTT
101661459 TTAA-AGTTAGGTGACCAAAACAATAACTT
1 TTAATAGTTAGGTGACC-AAACAATAACTT
101661488 ACAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (30 bp):
TTAATAGTTAGGTGACCAAACAATAACTTT
Found at i:101665239 original size:172 final size:172
Alignment explanation
Indices: 101664994--101665420 Score: 551
Period size: 172 Copynumber: 2.5 Consensus size: 172
101664984 AAACTATACT
* * * *
101664994 CAAGGTCAC-CAACTATTAGTAAGTTTATATTTTGGTCACT-AATTT-TAAAAAGTTACAAATTA
1 CAAGGTCACTCAACTATTAGTAAGTTTATACTTTGGTCACTCAATTTCAAAAAAGTTACAAGTTG
* * *
101665056 ATCACTAAACTATTTGAAAGTTATCATCTAACTTATTGGGT-ATTAAGTTGCTAATGGATGTATG
66 GTCACTAAACTATTTAAAAGTTATCATCTAACTTATT-GGTCATTAAATTGCTAATGGATGTATG
** * *
101665120 ATGTGGTCATTAATTCAAAATTCATCATAGAGTAAACTACAGC
130 ATGTGACCATTAATTCAAAATTCATCATAGAGCAAACTACAAC
* * * * *
101665163 TAGGGTCACTTAACTATTAGTAAGTTTATACTTTGATTACTCAATTTCAAAAAAGTTACAAGTTG
1 CAAGGTCACTCAACTATTAGTAAGTTTATACTTTGGTCACTCAATTTCAAAAAAGTTACAAGTTG
* * * * *
101665228 GTCATTAAACTATTTAAAAGTTGTCATTTAAGTTATTGGTCATTAAATTGCTAATGGATGTTTGA
66 GTCACTAAACTATTTAAAAGTTATCATCTAACTTATTGGTCATTAAATTGCTAATGGATGTATGA
* * ** *
101665293 TGTGACCGTTAATTTACTATTCATCATAGGGCAAACTACAAC
131 TGTGACCATTAATTCAAAATTCATCATAGAGCAAACTACAAC
*
101665335 CAAGGTCACTCAACTATTAGTAAGTTTATGC-TTGGTCACTCAATTTCAAAAACA-TTACAAGTT
1 CAAGGTCACTCAACTATTAGTAAGTTTATACTTTGGTCACTCAATTTCAAAAA-AGTTACAAGTT
101665398 GGTCACTAAACTATTTAAAAGTT
65 GGTCACTAAACTATTTAAAAGTT
101665421 TTAGGGCTTT
Statistics
Matches: 220, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
169 7 0.03
170 27 0.12
171 58 0.26
172 128 0.58
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (172 bp):
CAAGGTCACTCAACTATTAGTAAGTTTATACTTTGGTCACTCAATTTCAAAAAAGTTACAAGTTG
GTCACTAAACTATTTAAAAGTTATCATCTAACTTATTGGTCATTAAATTGCTAATGGATGTATGA
TGTGACCATTAATTCAAAATTCATCATAGAGCAAACTACAAC
Found at i:101673192 original size:19 final size:19
Alignment explanation
Indices: 101673157--101673194 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
101673147 AATTTAACAC
*
101673157 TTAATATTTACATATTCTA
1 TTAATATTTACAAATTCTA
101673176 TTAAT-TTTATCAAATTCTA
1 TTAATATTTA-CAAATTCTA
101673195 AAAATAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAATATTTACAAATTCTA
Found at i:101675364 original size:42 final size:40
Alignment explanation
Indices: 101675318--101675445 Score: 104
Period size: 41 Copynumber: 3.1 Consensus size: 40
101675308 AATTTCACAA
101675318 AAAAAATATAAGATATATAACTAAGCTTTAAAAAAGATTTAC
1 AAAAAATATAAGAT-TATAACTAAGC-TTAAAAAAGATTTAC
* * *
101675360 -AAAAATGATAAAATTTATAACTAA-C-GATAAAAAGAATT-C
1 AAAAAAT-ATAAGA-TTATAACTAAGCTTA-AAAAAGATTTAC
* *
101675399 ACAAATATATAAGACTTATAA-TGAAGCTTAAAAAAGATTCAC
1 A-AAAAATATAAGA-TTATAACT-AAGCTTAAAAAAGATTTAC
101675441 AAAAA
1 AAAAA
101675446 TGCCAAAAAG
Statistics
Matches: 67, Mismatches: 10, Indels: 19
0.70 0.10 0.20
Matches are distributed among these distances:
39 3 0.04
40 22 0.33
41 24 0.36
42 17 0.25
43 1 0.01
ACGTcount: A:0.58, C:0.09, G:0.08, T:0.26
Consensus pattern (40 bp):
AAAAAATATAAGATTATAACTAAGCTTAAAAAAGATTTAC
Found at i:101678611 original size:31 final size:28
Alignment explanation
Indices: 101678548--101678603 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
101678538 ATAAAACAAG
*
101678548 ACATACTTCTCTTGAACAAAGCTAAGTT
1 ACATACCTCTCTTGAACAAAGCTAAGTT
*
101678576 ACATACCTCTCTTGAGCAAAGCTAAGTT
1 ACATACCTCTCTTGAACAAAGCTAAGTT
101678604 GTTACATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.30
Consensus pattern (28 bp):
ACATACCTCTCTTGAACAAAGCTAAGTT
Found at i:101680427 original size:17 final size:17
Alignment explanation
Indices: 101680405--101680439 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
101680395 ACAAAGGAAC
101680405 TTTATGAGACAAATTAA
1 TTTATGAGACAAATTAA
101680422 TTTATGAGACAAATTAA
1 TTTATGAGACAAATTAA
101680439 T
1 T
101680440 CACATGTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (17 bp):
TTTATGAGACAAATTAA
Found at i:101683020 original size:12 final size:12
Alignment explanation
Indices: 101683003--101683038 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
101682993 ACTCAATAAG
101683003 ATTTAATTAAAT
1 ATTTAATTAAAT
101683015 ATTTAATTAAAT
1 ATTTAATTAAAT
* *
101683027 ATCTAAATAAAT
1 ATTTAATTAAAT
101683039 TTCTACAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (12 bp):
ATTTAATTAAAT
Found at i:101684164 original size:3 final size:3
Alignment explanation
Indices: 101684156--101684196 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
101684146 CTACTTCTTA
101684156 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
101684197 TATTATTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:101685675 original size:35 final size:35
Alignment explanation
Indices: 101685636--101685704 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
101685626 ACTTGCCTCT
101685636 TCCCACTCTCCCATGCTGCCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGCCTGCCACCAGCACCAC
*
101685671 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGCCTGCCACCAGCACCA
101685705 TCACACACCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.17, C:0.52, G:0.12, T:0.19
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGCCTGCCACCAGCACCAC
Found at i:101686549 original size:3 final size:3
Alignment explanation
Indices: 101686534--101686598 Score: 94
Period size: 3 Copynumber: 21.3 Consensus size: 3
101686524 GTTATTTTCA
* * *
101686534 TAT TAT TAA TAT TAT TAA TAT TATT TAT TAT TAA TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
101686580 TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
101686599 GTACATTAGT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
3 52 0.95
4 3 0.05
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:101686916 original size:22 final size:23
Alignment explanation
Indices: 101686888--101686942 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
101686878 CAATTTTTTA
101686888 ATATATATTATATGAATA-ATTT
1 ATATATATTATATGAATATATTT
* *
101686910 ATATATAATATTATGTATATATTT
1 ATATATATTA-TATGAATATATTT
101686934 -TA-ATATTAT
1 ATATATATTAT
101686943 CAGTTATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.04
22 14 0.50
23 9 0.32
24 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATATATTATATGAATATATTT
Found at i:101699444 original size:74 final size:72
Alignment explanation
Indices: 101699341--101699887 Score: 671
Period size: 73 Copynumber: 7.7 Consensus size: 72
101699331 TTCCGTTTTC
** *
101699341 AAAATCAACT--TATTGCGAGAAATGGGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTTAATTTCT
101699404 ATTTTCAAA
65 ATTTTC-AA
101699413 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTTAATTTCTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTTAATTTCTA
101699478 TTTTCAA
66 TTTTCAA
*
101699485 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTTAATTTCT
101699550 ATTTTCAAA
65 ATTTTC-AA
* * *
101699559 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTTCTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTTAATTTCTA
101699624 TTTTCAA
66 TTTTCAA
* *
101699631 AAAATCAACTCATATTGCGAGA--TGAGTTGAGCCTCAGACA--CTGAGGT-ATTTCAATTTCTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTTAATTTCTA
101699691 -TTTC-A
66 TTTTCAA
* * *
101699696 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGTTCACATGCTGA-GTAATTTCAA-TT-
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG--GACACGCTGAGGTAATTTTAATTTC
*
101699758 T-TGTTCAA
64 TATTTTCAA
* * ** *
101699766 AAAATCAACTCAT-TTGCGAGAGGCGAGTTGAGCCTCAAGACATACTTAGTATGTCAA-TTT--T
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGC-T-G-AGGT-AATTTTAAT
*
101699827 TTGTATGTTTC-A
61 TTCTAT-TTTCAA
*
101699839 AAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGACACGCTGA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGA
101699888 ATGAGTTGAG
Statistics
Matches: 427, Mismatches: 24, Indels: 49
0.85 0.05 0.10
Matches are distributed among these distances:
65 23 0.05
66 4 0.01
67 25 0.06
68 12 0.03
69 30 0.07
70 36 0.08
71 15 0.04
72 79 0.19
73 113 0.26
74 90 0.21
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (72 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTTAATTTCTA
TTTTCAA
Found at i:101700529 original size:35 final size:35
Alignment explanation
Indices: 101700483--101700551 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
101700473 ACTTGTCTCT
101700483 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
101700518 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
101700552 TCACACACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.17, C:0.51, G:0.12, T:0.20
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:101701397 original size:3 final size:3
Alignment explanation
Indices: 101701381--101701440 Score: 63
Period size: 3 Copynumber: 20.3 Consensus size: 3
101701371 GTTATTTTCA
* *
101701381 TAT TAT TAA T-T TAT TAT TAT TTT TAAT TAT TAT TAT TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
101701425 TAT TA- TAGT TAT TAT T
1 TAT TAT TA-T TAT TAT T
101701441 GTCCATTAGT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
2 5 0.10
3 39 0.81
4 4 0.08
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:101701436 original size:17 final size:17
Alignment explanation
Indices: 101701381--101701439 Score: 70
Period size: 17 Copynumber: 3.5 Consensus size: 17
101701371 GTTATTTTCA
101701381 TATTATTA-ATTTATTAT
1 TATTATTATA-TTATTAT
*
101701398 TATTTTTA-ATTATTAT
1 TATTATTATATTATTAT
101701414 TATTATTATATTATTA-
1 TATTATTATATTATTAT
101701430 TAGTTATTAT
1 TA-TTATTAT
101701440 TGTCCATTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
16 16 0.42
17 22 0.58
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TATTATTATATTATTAT
Found at i:101701766 original size:23 final size:24
Alignment explanation
Indices: 101701726--101701775 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
101701716 ATAGTCAATT
*
101701726 TTTATATATTATTATATGAATA-A
1 TTTATATATAATTATATGAATATA
*
101701749 TTTATATATAA-TATTATGTATATA
1 TTTATATATAATTA-TATGAATATA
101701773 TTT
1 TTT
101701776 TAATATTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 2 0.09
23 17 0.74
24 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (24 bp):
TTTATATATAATTATATGAATATA
Found at i:101701777 original size:25 final size:25
Alignment explanation
Indices: 101701723--101701781 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
101701713 TTAATAGTCA
*
101701723 ATTTT-TATATATTATTATATGAAT
1 ATTTTATATATAATATTATATGAAT
* *
101701747 AATTTATATATAATATTATGT-ATAT
1 ATTTTATATATAATATTATATGA-AT
101701772 ATTTTA-ATAT
1 ATTTTATATAT
101701782 TATCAGTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 9 0.31
25 20 0.69
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (25 bp):
ATTTTATATATAATATTATATGAAT
Found at i:101709055 original size:36 final size:36
Alignment explanation
Indices: 101709008--101709083 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
101708998 TAGAAAAGTA
101709008 TGATTTTTTTGGAGAAGATTCAGTCTCTCAAATGGC
1 TGATTTTTTTGGAGAAGATTCAGTCTCTCAAATGGC
101709044 TGATTTTTTTGGAGAAGATTCAGTCTCTCAAATGGC
1 TGATTTTTTTGGAGAAGATTCAGTCTCTCAAATGGC
101709080 TGAT
1 TGAT
101709084 ACATGATAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.39
Consensus pattern (36 bp):
TGATTTTTTTGGAGAAGATTCAGTCTCTCAAATGGC
Found at i:101709691 original size:39 final size:41
Alignment explanation
Indices: 101709617--101709693 Score: 97
Period size: 39 Copynumber: 1.9 Consensus size: 41
101709607 TTTTTTTACT
**
101709617 TTGTTTTTTTATTATTATTTACTTTTTTTTCTTTTGTCATA
1 TTGTTTTTTTATTATTATTTACTTTTTTAACTTTTGTCATA
*
101709658 TTGTTTCTTTT-TT-TTA-TTACTTTTTTAAGTTTTGTC
1 TTGTTT-TTTTATTATTATTTACTTTTTTAACTTTTGTC
101709694 TTTATCTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 17 0.53
40 3 0.09
41 8 0.25
42 4 0.12
ACGTcount: A:0.13, C:0.08, G:0.06, T:0.73
Consensus pattern (41 bp):
TTGTTTTTTTATTATTATTTACTTTTTTAACTTTTGTCATA
Found at i:101709721 original size:10 final size:9
Alignment explanation
Indices: 101709694--101709740 Score: 51
Period size: 10 Copynumber: 5.0 Consensus size: 9
101709684 AAGTTTTGTC
101709694 TTTATCTTTA
1 TTTAT-TTTA
101709704 TTTA-TTTA
1 TTTATTTTA
101709712 TTTTATTTTA
1 -TTTATTTTA
101709722 TTTATTATTA
1 TTTATT-TTA
*
101709732 TTAATTTTA
1 TTTATTTTA
101709741 AAAAACTTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
8 4 0.12
9 13 0.39
10 16 0.48
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTATTTTA
Found at i:101709721 original size:14 final size:14
Alignment explanation
Indices: 101709694--101709733 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
101709684 AAGTTTTGTC
101709694 TTTATCTTTA-TTTA
1 TTTAT-TTTATTTTA
101709708 TTTATTTTATTTTA
1 TTTATTTTATTTTA
101709722 TTTATTATTATT
1 TTTATT-TTATT
101709734 AATTTTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 4 0.17
14 15 0.62
15 5 0.21
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:101709721 original size:24 final size:24
Alignment explanation
Indices: 101709694--101709740 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
101709684 AAGTTTTGTC
*
101709694 TTTATCT-TTATTTATTTATTTTAT
1 TTTATCTATTA-TTATTAATTTTAT
*
101709718 TTTATTTATTATTATTAATTTTA
1 TTTATCTATTATTATTAATTTTA
101709741 AAAAACTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTATCTATTATTATTAATTTTAT
Found at i:101709723 original size:18 final size:17
Alignment explanation
Indices: 101709694--101709740 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 17
101709684 AAGTTTTGTC
101709694 TTTATCTTTATTTATTTAT
1 TTTAT-TTTATTTA-TTAT
101709713 TTTATTTTATTTATTAT
1 TTTATTTTATTTATTAT
101709730 TATTAATTTTA
1 T-TT-ATTTTA
101709741 AAAAACTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.19
18 10 0.38
19 11 0.42
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTATTTTATTTATTAT
Found at i:101709738 original size:14 final size:13
Alignment explanation
Indices: 101709694--101709738 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 13
101709684 AAGTTTTGTC
101709694 TTTATCTTTATTTA
1 TTTAT-TTTATTTA
101709708 TTTATTTTATTTTA
1 TTTATTTTA-TTTA
*
101709722 TTTATTATTATTAA
1 TTTATT-TTATTTA
101709736 TTT
1 TTT
101709739 TAAAAAACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 4 0.14
14 21 0.75
15 3 0.11
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:101709781 original size:23 final size:21
Alignment explanation
Indices: 101709750--101709806 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
101709740 AAAAAACTTG
* *
101709750 AAATGTATATTTGAAATGTTTT
1 AAATATATATTTGAAA-ATTTT
*
101709772 ATAATATATATTTTTAAAATTTT
1 A-AATATATA-TTTGAAAATTTT
101709795 AAATATATATTT
1 AAATATATATTT
101709807 TTGAAATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 9 0.30
23 12 0.40
24 6 0.20
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (21 bp):
AAATATATATTTGAAAATTTT
Found at i:101709802 original size:20 final size:20
Alignment explanation
Indices: 101709777--101709895 Score: 69
Period size: 23 Copynumber: 5.5 Consensus size: 20
101709767 GTTTTATAAT
101709777 ATATATTTTTAAAATTTTAAA
1 ATATATTTTTAAAATTTT-AA
**
101709798 TATATATTTTTGAAATTATTTTTT
1 -ATATATTTTT-AAA--ATTTTAA
* * *
101709822 CTAAATTTTAAATATTATTTTTAA
1 ATATATTTTTAA-A--AT-TTTAA
*
101709846 AT-TATTTTTAAAACTTTAA
1 ATATATTTTTAAAATTTTAA
* *
101709865 ATATTATTTTTTAAATATTAA
1 ATA-TATTTTTAAAATTTTAA
101709886 ATATATTTTT
1 ATATATTTTT
101709896 TAATAATATT
Statistics
Matches: 76, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
19 7 0.09
20 8 0.11
21 17 0.22
22 13 0.17
23 22 0.29
24 4 0.05
25 5 0.07
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (20 bp):
ATATATTTTTAAAATTTTAA
Found at i:101709802 original size:22 final size:22
Alignment explanation
Indices: 101709768--101709898 Score: 90
Period size: 21 Copynumber: 5.9 Consensus size: 22
101709758 ATTTGAAATG
101709768 TTTTATAATATATATTTTTAAAA
1 TTTTA-AATATATATTTTTAAAA
*
101709791 TTTTAAATATATATTTTTGAAA
1 TTTTAAATATATATTTTTAAAA
*** * * *
101709813 TTATTTTTTCTAAATTTTAAATATTA
1 TT-TTAAATATATATTTTTAA-A--A
*
101709839 TTTTTAA-AT-TATTTTTAAAA
1 TTTTAAATATATATTTTTAAAA
* *
101709859 CTTTAAATAT-TATTTTTTAAA
1 TTTTAAATATATATTTTTAAAA
*
101709880 TATTAAATATAT-TTTTTAA
1 TTTTAAATATATATTTTTAA
101709899 TAATATTTCT
Statistics
Matches: 83, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
20 6 0.07
21 26 0.31
22 20 0.24
23 23 0.28
24 2 0.02
25 3 0.04
26 3 0.04
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.58
Consensus pattern (22 bp):
TTTTAAATATATATTTTTAAAA
Found at i:101709872 original size:21 final size:21
Alignment explanation
Indices: 101709846--101709905 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
101709836 TTATTTTTAA
101709846 ATTATTTTTAAAACT-TTAAAT
1 ATTATTTTTAAAA-TATTAAAT
*
101709867 ATTATTTTTTAAATATTAAAT
1 ATTATTTTTAAAATATTAAAT
101709888 A-TATTTTTTAATAATATT
1 ATTA-TTTTTAA-AATATT
101709906 TCTGAGCCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 3 0.09
21 25 0.74
22 6 0.18
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTATTTTTAAAATATTAAAT
Found at i:101712655 original size:40 final size:40
Alignment explanation
Indices: 101712578--101712794 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
101712568 AAACCAAGTA
* * * *
101712578 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
101712617 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
101712657 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
101712697 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
101712737 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
101712776 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
101712795 TTATCATCCG
Statistics
Matches: 164, Mismatches: 10, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 48 0.29
40 115 0.70
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:101716327 original size:30 final size:30
Alignment explanation
Indices: 101716288--101716344 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
101716278 TTTTATAAAT
101716288 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
101716318 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
101716345 AACAACAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:101730252 original size:19 final size:19
Alignment explanation
Indices: 101730208--101730259 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 19
101730198 ATTACAAAAA
* *
101730208 AAAAATCAATATAATTTTT
1 AAAATTCAAAATAATTTTT
101730227 AAGAATTCAAAATAATTTTT
1 AA-AATTCAAAATAATTTTT
101730247 AAAATTCAAAATA
1 AAAATTCAAAATA
101730260 TTTCTAAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:101730267 original size:18 final size:19
Alignment explanation
Indices: 101730208--101730267 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 19
101730198 ATTACAAAAA
* * *
101730208 AAAAATCAATATAATTTTT
1 AAAATTCAAAATAATTTCT
*
101730227 AAGAATTCAAAATAATTTTT
1 AA-AATTCAAAATAATTTCT
101730247 AAAATTCAAAAT-ATTTCT
1 AAAATTCAAAATAATTTCT
101730265 AAA
1 AAA
101730268 GAATATATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
18 8 0.22
19 12 0.32
20 17 0.46
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAATTCAAAATAATTTCT
Found at i:101730558 original size:19 final size:16
Alignment explanation
Indices: 101730534--101730580 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 16
101730524 CATATAAACT
101730534 TTAAAAATATAGAAAGAAA
1 TTAAAAATA-A-AAA-AAA
101730553 TTAAAAATAAAAAAAA
1 TTAAAAATAAAAAAAA
101730569 TTAAGAAATAAA
1 TTAA-AAATAAA
101730581 TTTATTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.26
17 10 0.37
18 1 0.04
19 9 0.33
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.21
Consensus pattern (16 bp):
TTAAAAATAAAAAAAA
Found at i:101731102 original size:19 final size:17
Alignment explanation
Indices: 101731068--101731102 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 17
101731058 GTTCTCTATG
101731068 TATATTTTCTTAATTTC
1 TATATTTTCTTAATTTC
101731085 TATATTTTTCTATAATTT
1 TATA-TTTTCT-TAATTT
101731103 AGAAAACTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 6 0.38
19 6 0.38
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (17 bp):
TATATTTTCTTAATTTC
Found at i:101731628 original size:38 final size:38
Alignment explanation
Indices: 101731547--101731627 Score: 108
Period size: 38 Copynumber: 2.1 Consensus size: 38
101731537 TATTTAGTAA
* **
101731547 AATAAAATATTTATTATATTTATTTTTATTTTTAATAT
1 AATAAAACATTTATTATATTTATTAGTATTTTTAATAT
101731585 AATAAAACATTTATTATATTTATGGTAGTATTTTTTAATAT
1 AATAAAACATTTATTATATTTAT--TAGTA-TTTTTAATAT
101731626 AA
1 AA
101731628 ATATTTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
38 22 0.59
40 3 0.08
41 12 0.32
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (38 bp):
AATAAAACATTTATTATATTTATTAGTATTTTTAATAT
Found at i:101735785 original size:6 final size:6
Alignment explanation
Indices: 101735774--101735803 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
101735764 AAACAGAGGG
101735774 AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC
1 AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC
101735804 GAATAGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.33, T:0.00
Consensus pattern (6 bp):
AGAAGC
Found at i:101736604 original size:31 final size:31
Alignment explanation
Indices: 101736512--101736605 Score: 170
Period size: 31 Copynumber: 3.0 Consensus size: 31
101736502 TTCATCCAGG
* *
101736512 TAAGCCTTCTTTTTCTTCCGTTCTTCAACTC
1 TAAGCCTTCTTTTTCTTCCATTCTTCAACTT
101736543 TAAGCCTTCTTTTTCTTCCATTCTTCAACTT
1 TAAGCCTTCTTTTTCTTCCATTCTTCAACTT
101736574 TAAGCCTTCTTTTTCTTCCATTCTTCAACTT
1 TAAGCCTTCTTTTTCTTCCATTCTTCAACTT
101736605 T
1 T
101736606 TTTCCATCTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.15, C:0.30, G:0.04, T:0.51
Consensus pattern (31 bp):
TAAGCCTTCTTTTTCTTCCATTCTTCAACTT
Found at i:101736621 original size:31 final size:31
Alignment explanation
Indices: 101736524--101736622 Score: 99
Period size: 31 Copynumber: 3.2 Consensus size: 31
101736514 AGCCTTCTTT
* * * **
101736524 TTCTTCCGTTCTTCAACTCTAAGCCTTCTTT
1 TTCTTCCATTCTTCAACTTTAAGCCATCTCC
* **
101736555 TTCTTCCATTCTTCAACTTTAAGCCTTCTTT
1 TTCTTCCATTCTTCAACTTTAAGCCATCTCC
***
101736586 TTCTTCCATTCTTCAACTTTTTTCCATCTCC
1 TTCTTCCATTCTTCAACTTTAAGCCATCTCC
101736617 TTCTTC
1 TTCTTC
101736623 ATCTAGGTAA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.13, C:0.32, G:0.03, T:0.52
Consensus pattern (31 bp):
TTCTTCCATTCTTCAACTTTAAGCCATCTCC
Found at i:101740306 original size:15 final size:15
Alignment explanation
Indices: 101740266--101740307 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
101740256 ACTCCATTCC
* *
101740266 CTTTAATCATGGTAA
1 CTTTAGTCATTGTAA
101740281 CTTTAGTCATTGTAA
1 CTTTAGTCATTGTAA
101740296 CTTTAGTCATTG
1 CTTTAGTCATTG
101740308 CTTGAGAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.45
Consensus pattern (15 bp):
CTTTAGTCATTGTAA
Found at i:101741860 original size:27 final size:27
Alignment explanation
Indices: 101741830--101741902 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
101741820 TGTCTTGAAT
101741830 TTGTTAGATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
101741857 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTCAAGC
*
101741889 TTGTTGGATATTGA
1 TTGTTAGATATTGA
101741903 AATGATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 14 0.36
32 25 0.64
ACGTcount: A:0.26, C:0.04, G:0.19, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:101741882 original size:32 final size:32
Alignment explanation
Indices: 101741843--101741903 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
101741833 TTAGATATTG
101741843 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
* *
101741875 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATGTTTCAAGCTTGTTAGATATTGAA
101741904 ATGATTGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.49
Consensus pattern (32 bp):
ATTATGTTTCAAGCTTGTTAGATATTGAATTT
Found at i:101743545 original size:52 final size:52
Alignment explanation
Indices: 101743459--101743563 Score: 140
Period size: 52 Copynumber: 2.0 Consensus size: 52
101743449 AGGTGTAAAA
* * * *
101743459 ACATAATGCATGAAATACAACAAATGTTGGGCCTGTTTTTGCCCCTATGTGT
1 ACATAACGCATGAAATACAACAAAAGTTGAGCCTGTTTCTGCCCCTATGTGT
**
101743511 ACATAACGCATGAAATACAACAAAAGCTT-AGCCTGTTTCTGTTCCTATGTGT
1 ACATAACGCATGAAATACAACAAAAG-TTGAGCCTGTTTCTGCCCCTATGTGT
101743563 A
1 A
101743564 GGCCTATAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
52 44 0.96
53 2 0.04
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (52 bp):
ACATAACGCATGAAATACAACAAAAGTTGAGCCTGTTTCTGCCCCTATGTGT
Found at i:101745836 original size:64 final size:66
Alignment explanation
Indices: 101745765--101745897 Score: 216
Period size: 64 Copynumber: 2.0 Consensus size: 66
101745755 AGTGGCAGCA
101745765 AATTATAATAATAAAAGAATTGTATGTATATATAATA-T-TGATGATATAGTTTGGAATTGTTAT
1 AATTATAATAATAAAAGAATTGTATGTATATATAATATTATGATGATATAGTTTGGAATTGTTAT
101745828 G
66 G
***
101745829 AATTATAATAATAGTGGAATTGTATGTATATATAATATTGATGATGATATAGTTTGGAATTGTTA
1 AATTATAATAATAAAAGAATTGTATGTATATATAATATT-ATGATGATATAGTTTGGAATTGTTA
101745894 TG
65 TG
101745896 AA
1 AA
101745898 CTATCTTCAT
Statistics
Matches: 63, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
64 34 0.54
65 1 0.02
67 28 0.44
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.42
Consensus pattern (66 bp):
AATTATAATAATAAAAGAATTGTATGTATATATAATATTATGATGATATAGTTTGGAATTGTTAT
G
Found at i:101747809 original size:2 final size:2
Alignment explanation
Indices: 101747802--101747827 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
101747792 GTACTAAAAC
101747802 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
101747828 GTTACCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101748145 original size:15 final size:15
Alignment explanation
Indices: 101748115--101748170 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
101748105 TATTATTTGT
101748115 ATAACCTTTTTAATCA
1 ATAACC-TTTTAATCA
*
101748131 ATAACCTTTTCATCA
1 ATAACCTTTTAATCA
*
101748146 ATAACCTTTTAATCG
1 ATAACCTTTTAATCA
*
101748161 ATAACATTTT
1 ATAACCTTTT
101748171 CATCCTTTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
15 30 0.83
16 6 0.17
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.43
Consensus pattern (15 bp):
ATAACCTTTTAATCA
Found at i:101748158 original size:30 final size:31
Alignment explanation
Indices: 101748115--101748174 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
101748105 TATTATTTGT
*
101748115 ATAACCTTTTTAATCAATAACCTTTTCATCA
1 ATAACCTTTTTAATCAATAACATTTTCATCA
*
101748146 ATAACC-TTTTAATCGATAACATTTTCATC
1 ATAACCTTTTTAATCAATAACATTTTCATC
101748175 CTTTCCATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.35, C:0.22, G:0.02, T:0.42
Consensus pattern (31 bp):
ATAACCTTTTTAATCAATAACATTTTCATCA
Found at i:101754382 original size:23 final size:23
Alignment explanation
Indices: 101754348--101754401 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
101754338 AACTTCAAGG
101754348 ATTGACACCTATCATTCTCTTAT
1 ATTGACACCTATCATTCTCTTAT
* *
101754371 ATTGACATCTATCATTCTCTTAA
1 ATTGACACCTATCATTCTCTTAT
*
101754394 ATCGACAC
1 ATTGACAC
101754402 TTGTTGAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.39
Consensus pattern (23 bp):
ATTGACACCTATCATTCTCTTAT
Found at i:101757508 original size:26 final size:25
Alignment explanation
Indices: 101757479--101757536 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
101757469 CTTAAACTAG
*
101757479 ATAATATATAAGATGGTTTA-ACATAA
1 ATAATATATAAGAT-ATTTAGA-ATAA
*
101757505 ATAATGTATAAGATATTTAGAATAA
1 ATAATATATAAGATATTTAGAATAA
101757530 ATAATAT
1 ATAATAT
101757537 GAAAAGAGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (25 bp):
ATAATATATAAGATATTTAGAATAA
Found at i:101757864 original size:3 final size:3
Alignment explanation
Indices: 101757858--101757975 Score: 59
Period size: 3 Copynumber: 40.0 Consensus size: 3
101757848 ATAGTACTAG
* * * *
101757858 TAA TAA T-A CAA TAA TAA TAA -AG TAGA AAA CAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
* * *
101757902 TAA TAA -AA T-A TAA GTAA TAG TAA GAA -AA TAG TAA TAA TAA TAAA
1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
** * *
101757946 TGG TAA TAA TAGA -AT TAA TAA TAA AAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
101757976 AGTCGATTGA
Statistics
Matches: 85, Mismatches: 20, Indels: 20
0.68 0.16 0.16
Matches are distributed among these distances:
2 8 0.09
3 69 0.81
4 8 0.09
ACGTcount: A:0.64, C:0.02, G:0.08, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:101757919 original size:20 final size:19
Alignment explanation
Indices: 101757892--101757944 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
101757882 GAAAACAATA
*
101757892 ATAATAATAATAATAAAAT
1 ATAATAATAATAAGAAAAT
*
101757911 ATAAGTAATAGTAAGAAAAT
1 ATAA-TAATAATAAGAAAAT
101757931 AGTAATAATAATAA
1 A-TAATAATAATAA
101757945 ATGGTAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.14
20 22 0.76
21 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (19 bp):
ATAATAATAATAAGAAAAT
Found at i:101762653 original size:23 final size:23
Alignment explanation
Indices: 101762624--101762672 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
101762614 TTACTCTAAA
101762624 ATATATTATTTAAAATAAATTTT
1 ATATATTATTTAAAATAAATTTT
* * *
101762647 ATATATTTTTTAAATTAAGTTTT
1 ATATATTATTTAAAATAAATTTT
101762670 ATA
1 ATA
101762673 ATCTTAACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
ATATATTATTTAAAATAAATTTT
Found at i:101767985 original size:20 final size:19
Alignment explanation
Indices: 101767960--101768004 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
101767950 AATAATTTTT
*
101767960 TTTTTCATAATTTTTGGAAA
1 TTTTTCATAATGTTT-GAAA
*
101767980 TTTTTCATAATGTTTGTAA
1 TTTTTCATAATGTTTGAAA
101767999 TTTTTC
1 TTTTTC
101768005 TTTTTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.24, C:0.07, G:0.09, T:0.60
Consensus pattern (19 bp):
TTTTTCATAATGTTTGAAA
Found at i:101770810 original size:21 final size:21
Alignment explanation
Indices: 101770764--101770813 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
101770754 CGCTGTTTCT
*
101770764 AATCTCACAGCTACAGTATCC
1 AATCTCACAGCTACAGTAACC
101770785 AATCTCATC-GCTACAGTAACTC
1 AATCTCA-CAGCTACAGTAAC-C
101770807 -ATCTCAC
1 AATCTCAC
101770814 TGCCACCGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 1 0.04
21 23 0.88
22 2 0.08
ACGTcount: A:0.32, C:0.34, G:0.08, T:0.26
Consensus pattern (21 bp):
AATCTCACAGCTACAGTAACC
Found at i:101777791 original size:20 final size:20
Alignment explanation
Indices: 101777766--101777807 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
101777756 AAGCTTGACC
101777766 TAATTTGAGAAAAATATTAT
1 TAATTTGAGAAAAATATTAT
101777786 TAATTTGAGAAAAATATTAT
1 TAATTTGAGAAAAATATTAT
101777806 TA
1 TA
101777808 TAATAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (20 bp):
TAATTTGAGAAAAATATTAT
Found at i:101779647 original size:12 final size:13
Alignment explanation
Indices: 101779625--101779665 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
101779615 AACAATAATT
101779625 ATAATAGTAAATA
1 ATAATAGTAAATA
*
101779638 TTAATA-TAAATA
1 ATAATAGTAAATA
*
101779650 ATAATACT-AATA
1 ATAATAGTAAATA
101779662 ATAA
1 ATAA
101779666 GAAGAAGACA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 19 0.76
13 6 0.24
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (13 bp):
ATAATAGTAAATA
Found at i:101779783 original size:44 final size:48
Alignment explanation
Indices: 101779735--101779823 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 48
101779725 ATATAAAAGG
*
101779735 TAATAAATAGGT-A-AATAAATAAATG-AT-AATAAAAT-AATAATACA
1 TAATAAATAGGTAACAAT-AATAAAGGTATAAATAAAATAAATAATACA
*
101779779 TAATAAATTGGTAACAATAATAAAGGTATAAATAAAATAAATAAT
1 TAATAAATAGGTAACAATAATAAAGGTATAAATAAAATAAATAAT
101779824 CAAAGAAAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 11 0.29
45 8 0.21
46 5 0.13
47 8 0.21
48 6 0.16
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (48 bp):
TAATAAATAGGTAACAATAATAAAGGTATAAATAAAATAAATAATACA
Found at i:101780917 original size:20 final size:21
Alignment explanation
Indices: 101780887--101780927 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
101780877 TTTATAATTT
101780887 CATTATTTTTA-AGGGACTAAA
1 CATTATTTTTAGAGGGA-TAAA
101780908 CATT-TTTTTAGAGGGATAAA
1 CATTATTTTTAGAGGGATAAA
101780928 ATGTAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (21 bp):
CATTATTTTTAGAGGGATAAA
Found at i:101781440 original size:13 final size:13
Alignment explanation
Indices: 101781424--101781448 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101781414 AATATTAAAC
101781424 AATTAATTTTTTA
1 AATTAATTTTTTA
101781437 AATTAATTTTTT
1 AATTAATTTTTT
101781449 CTCATAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
AATTAATTTTTTA
Found at i:101781937 original size:23 final size:24
Alignment explanation
Indices: 101781908--101781957 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
101781898 TTACCCTAAA
101781908 ATATATTATTTAAAA-TAAATTTT
1 ATATATTATTTAAAACTAAATTTT
* *
101781931 ATATATTTTTTAAAACTAAGTTTT
1 ATATATTATTTAAAACTAAATTTT
101781955 ATA
1 ATA
101781958 ATCCAAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
ATATATTATTTAAAACTAAATTTT
Found at i:101783026 original size:21 final size:22
Alignment explanation
Indices: 101782976--101783027 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
101782966 ACATACATTT
* *
101782976 ATAA-TATATGTATTTAATTAT
1 ATAATTATATTTATTTAATTAA
*
101782997 A-AATGATATTTA-TTAATTAA
1 ATAATTATATTTATTTAATTAA
101783017 ATAATTATATT
1 ATAATTATATT
101783028 ATAAGATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (22 bp):
ATAATTATATTTATTTAATTAA
Found at i:101783285 original size:19 final size:19
Alignment explanation
Indices: 101783258--101783299 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
101783248 ACGAAACATG
*
101783258 GGAAGGAAAGAAGGAAAAA
1 GGAAGGAAAGAAAGAAAAA
*
101783277 GGAATGAAAGAAAGAAAAA
1 GGAAGGAAAGAAAGAAAAA
101783296 GGAA
1 GGAA
101783300 AAATTGGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.33, T:0.02
Consensus pattern (19 bp):
GGAAGGAAAGAAAGAAAAA
Found at i:101784021 original size:18 final size:18
Alignment explanation
Indices: 101783998--101784064 Score: 80
Period size: 18 Copynumber: 3.7 Consensus size: 18
101783988 TATTAAAGAC
* *
101783998 TGACTGCTACTGAATAAT
1 TGACTGTTACTGAATAAA
*
101784016 TGACTGTTATTGAATAAA
1 TGACTGTTACTGAATAAA
* *
101784034 CGACTGATACTGAATAAA
1 TGACTGTTACTGAATAAA
*
101784052 TGATTGTTACTGA
1 TGACTGTTACTGA
101784065 TTAACCGACT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (18 bp):
TGACTGTTACTGAATAAA
Found at i:101784081 original size:36 final size:36
Alignment explanation
Indices: 101783999--101784074 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
101783989 ATTAAAGACT
* * *
101783999 GACTGCTACTGAATAATTGACTGTTATTGAATAAAC
1 GACTGATACTGAATAAATGACTGTTACTGAATAAAC
* * *
101784035 GACTGATACTGAATAAATGATTGTTACTGATTAACC
1 GACTGATACTGAATAAATGACTGTTACTGAATAAAC
101784071 GACT
1 GACT
101784075 ATTACTGTTG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (36 bp):
GACTGATACTGAATAAATGACTGTTACTGAATAAAC
Found at i:101791530 original size:54 final size:54
Alignment explanation
Indices: 101791391--101791539 Score: 154
Period size: 54 Copynumber: 2.8 Consensus size: 54
101791381 GAAGCAGACG
* * * * * *
101791391 TAGTGTTACGGCCCGAGACTTTAGCTCCCTTAACGTGCAATTTTAGTCGAGAGA
1 TAGTGTTACGGGCCGAGACTTTAGCTCCATCAACATGCAATTTTAGTCAAAAGA
* * * * * * * *
101791445 TAATGTTACGGGCTGACACTTTAGTTTCATCAATATGTAATTTTATTCAAAAGA
1 TAGTGTTACGGGCCGAGACTTTAGCTCCATCAACATGCAATTTTAGTCAAAAGA
* *
101791499 TTGTGTTACGGGCCGAGACTTTAACTCCATCAACATGCAAT
1 TAGTGTTACGGGCCGAGACTTTAGCTCCATCAACATGCAAT
101791540 CGGAGGTAGA
Statistics
Matches: 72, Mismatches: 23, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (54 bp):
TAGTGTTACGGGCCGAGACTTTAGCTCCATCAACATGCAATTTTAGTCAAAAGA
Found at i:101794770 original size:21 final size:22
Alignment explanation
Indices: 101794741--101794787 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
101794731 CAGAAGGAGT
*
101794741 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
101794763 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
101794784 GAGT
1 GAGT
101794788 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:101795891 original size:24 final size:24
Alignment explanation
Indices: 101795859--101795908 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
101795849 TAATAAATAA
101795859 TTGTGTTATTAATTCAAATTAAAT
1 TTGTGTTATTAATTCAAATTAAAT
101795883 TTGTGTTATTAATTCAAATTAAAT
1 TTGTGTTATTAATTCAAATTAAAT
101795907 TT
1 TT
101795909 CTATGTACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.52
Consensus pattern (24 bp):
TTGTGTTATTAATTCAAATTAAAT
Found at i:101799212 original size:3 final size:3
Alignment explanation
Indices: 101799204--101799233 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
101799194 TTGAAACTAT
101799204 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
101799234 GGCAATAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:101799513 original size:15 final size:15
Alignment explanation
Indices: 101799492--101799535 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 15
101799482 GAAACAAACT
101799492 ATAAATAAATAAA-A
1 ATAAATAAATAAATA
101799506 ATACAATAGATATAAATA
1 ATA-AATA-A-ATAAATA
101799524 ATAAATAAATAA
1 ATAAATAAATAA
101799536 GTATTAGGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 3 0.12
15 8 0.31
16 2 0.08
17 9 0.35
18 4 0.15
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.25
Consensus pattern (15 bp):
ATAAATAAATAAATA
Found at i:101802359 original size:16 final size:15
Alignment explanation
Indices: 101802338--101802396 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
101802328 ATAATTAATA
*
101802338 AAATTTGAAAGTAACT
1 AAATTT-AAAATAACT
*
101802354 AAATTTAAAATAATT
1 AAATTTAAAATAACT
*
101802369 AAATTCAAAATGAACT
1 AAATTTAAAAT-AACT
*
101802385 CAAATTTCAAAT
1 -AAATTTAAAAT
101802397 GAAAAAGGTT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
15 17 0.49
16 9 0.26
17 9 0.26
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.32
Consensus pattern (15 bp):
AAATTTAAAATAACT
Found at i:101802631 original size:20 final size:19
Alignment explanation
Indices: 101802606--101802645 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
101802596 TTTTTTTTGA
*
101802606 CATAATTTTTGGAAATTTTT
1 CATAATGTTT-GAAATTTTT
*
101802626 CATAATGTTTGTAATTTTT
1 CATAATGTTTGAAATTTTT
101802645 C
1 C
101802646 TTTTTAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (19 bp):
CATAATGTTTGAAATTTTT
Found at i:101802891 original size:22 final size:21
Alignment explanation
Indices: 101802855--101802912 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
101802845 TTAACTTTTA
* *
101802855 ATTTTCTTTGATATTTACCTG
1 ATTTTTTTTGCTATTTACCTG
*
101802876 ATTTCTTTTTGCTATTT-TCTG
1 ATTT-TTTTTGCTATTTACCTG
101802897 ATTTTTTTTGC-ATTTA
1 ATTTTTTTTGCTATTTA
101802913 TTTTGAGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 4 0.12
20 7 0.22
21 11 0.34
22 10 0.31
ACGTcount: A:0.16, C:0.12, G:0.09, T:0.64
Consensus pattern (21 bp):
ATTTTTTTTGCTATTTACCTG
Found at i:101802906 original size:20 final size:20
Alignment explanation
Indices: 101802873--101802911 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
101802863 TGATATTTAC
101802873 CTGATTTCTTTTTGCTATTTT
1 CTGATTTCTTTTTGC-ATTTT
101802894 CTGATTT-TTTTTGCATTT
1 CTGATTTCTTTTTGCATTT
101802912 ATTTTGAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 7 0.39
21 7 0.39
ACGTcount: A:0.10, C:0.13, G:0.10, T:0.67
Consensus pattern (20 bp):
CTGATTTCTTTTTGCATTTT
Found at i:101809193 original size:25 final size:26
Alignment explanation
Indices: 101809154--101809204 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
101809144 TTTTTTTAAA
*
101809154 AAATTATTATAATTTTTAAAAAATAT
1 AAATTATTAGAATTTTTAAAAAATAT
* *
101809180 AAATT-TTAGAATTTTTTATAAATAT
1 AAATTATTAGAATTTTTAAAAAATAT
101809205 TTTTAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
AAATTATTAGAATTTTTAAAAAATAT
Found at i:101809213 original size:21 final size:21
Alignment explanation
Indices: 101809116--101809214 Score: 60
Period size: 22 Copynumber: 4.5 Consensus size: 21
101809106 ATTTTTAAAA
*
101809116 TTTTAACTTTCTTTAT--ATAT
1 TTTTAAATTT-TTTATAAATAT
*
101809136 TCTTTAAATTTTTT-TAAAAAAT
1 T-TTTAAATTTTTTAT-AAATAT
* * *
101809158 TATTATAATTTTTAAAAAATAT
1 TTTTA-AATTTTTTATAAATAT
101809180 AAATTTTAGAATTTTTTATAAATAT
1 ---TTTTA-AATTTTTTATAAATAT
101809205 TTTTAAATTT
1 TTTTAAATTT
101809215 ACAAATTATT
Statistics
Matches: 60, Mismatches: 10, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
19 1 0.02
20 4 0.07
21 16 0.27
22 21 0.35
25 18 0.30
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (21 bp):
TTTTAAATTTTTTATAAATAT
Found at i:101839882 original size:24 final size:24
Alignment explanation
Indices: 101839820--101839882 Score: 58
Period size: 24 Copynumber: 2.6 Consensus size: 24
101839810 AATATGGTTG
101839820 CAGATACA-AATACAGATACAATTT
1 CAGATACAGAA-ACAGATACAATTT
* * * *
101839844 TAGA-ATTAGATACAGATGCAATTT
1 CAGATA-CAGAAACAGATACAATTT
101839868 CAGATACAGAAACAG
1 CAGATACAGAAACAG
101839883 GTCTTACCCC
Statistics
Matches: 29, Mismatches: 7, Indels: 6
0.69 0.17 0.14
Matches are distributed among these distances:
23 1 0.03
24 26 0.90
25 2 0.07
ACGTcount: A:0.48, C:0.14, G:0.14, T:0.24
Consensus pattern (24 bp):
CAGATACAGAAACAGATACAATTT
Found at i:101843939 original size:50 final size:50
Alignment explanation
Indices: 101843864--101844134 Score: 445
Period size: 50 Copynumber: 5.4 Consensus size: 50
101843854 CCATGGAAAC
*
101843864 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATGAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
101843914 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
101843964 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
**
101844014 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGGGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
101844064 AAGTGATAAGTGATAGCTTCGGCTACATTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * *
101844114 CAACTGAAAAGTGGTAGCTTC
1 -AAGTGATAAGTGATAGCTTC
101844135 AGTTACTTGA
Statistics
Matches: 208, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
50 189 0.91
51 19 0.09
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:101844326 original size:31 final size:31
Alignment explanation
Indices: 101844118--101844319 Score: 280
Period size: 31 Copynumber: 6.5 Consensus size: 31
101844108 AAATGACAAC
* *
101844118 TGAAAAGTGGTAGCTTCAGTTACTTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
101844149 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* * *
101844180 TGAAAAGTGGTAGTTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
101844211 TGAAAAGTGCTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
101844242 TGAAAAGTGGTAG-TTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTT-CAGCTACCTGATCAG
* **
101844273 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
101844304 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
101844320 TGGCTACAAA
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
30 2 0.01
31 149 0.99
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:101844460 original size:47 final size:47
Alignment explanation
Indices: 101844357--101844482 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 47
101844347 CAAGTGATTT
* * *
101844357 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGTTATATGCTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGCTA
* * *
101844404 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATG-CTA
* *
101844452 C-GTGTAAGACCATAGT-TGGGCTATGGCATCA
1 CTGTATAAGACCATA-TCTGGGATATGGCATCA
101844483 TTATGTAAAG
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
47 64 0.94
48 4 0.06
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (47 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGCTA
Found at i:101849780 original size:162 final size:163
Alignment explanation
Indices: 101849502--101849825 Score: 605
Period size: 162 Copynumber: 2.0 Consensus size: 163
101849492 ACACTTATGT
101849502 TTTTTGAGATGGACCAACCTCTTAAAAGTAACTTCCATGTCTGGAAATAGTAGGATCGGAGCCCT
1 TTTTTGAGATGGACCAACCTCTTAAAAGTAACTTCCATGTCTGGAAATAGTAGGATCGGAGCCCT
101849567 GTGCTTTTCTGCACTAATATTCTACTTCGCATAAAGTAAGCATGCTGTGACTGAGATGTCGTTCT
66 GTGCTTTTCTGCACTAATATTCTACTTCGCATAAAGTAAGCATGCTGTGACTGAGATGTCGTTCT
101849632 GATCCAGGAAGTATAACTGCTTCCCCTAATTGG
131 GATCCAGGAAGTATAACTGCTTCCCCTAATTGG
* *
101849665 TTTTTGAGATGGACCAACCTCTTAAAAGTAACTTCCATGTCTGGAAATAGTAGTATTGGAG-CCT
1 TTTTTGAGATGGACCAACCTCTTAAAAGTAACTTCCATGTCTGGAAATAGTAGGATCGGAGCCCT
*
101849729 GTGCTTTTCTGCACTAATATTCTACTTCGCATAAAGTAAGCATGTTGTGACTGAGATGTCGTTCT
66 GTGCTTTTCTGCACTAATATTCTACTTCGCATAAAGTAAGCATGCTGTGACTGAGATGTCGTTCT
*
101849794 GATGCAGGAAGTATAACTGCTTCCCCTAATTG
131 GATCCAGGAAGTATAACTGCTTCCCCTAATTG
101849826 ATTATAGCTA
Statistics
Matches: 157, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
162 98 0.62
163 59 0.38
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33
Consensus pattern (163 bp):
TTTTTGAGATGGACCAACCTCTTAAAAGTAACTTCCATGTCTGGAAATAGTAGGATCGGAGCCCT
GTGCTTTTCTGCACTAATATTCTACTTCGCATAAAGTAAGCATGCTGTGACTGAGATGTCGTTCT
GATCCAGGAAGTATAACTGCTTCCCCTAATTGG
Found at i:101858171 original size:24 final size:23
Alignment explanation
Indices: 101858144--101858188 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
101858134 TTTAGTCCCT
*
101858144 AACTTTTCCTCATTTTCATTTTAA
1 AACTTTTCCT-AATTTCATTTTAA
*
101858168 AACTTTTTCTAATTTCATTTT
1 AACTTTTCCTAATTTCATTTT
101858189 GATACTGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.58
Consensus pattern (23 bp):
AACTTTTCCTAATTTCATTTTAA
Found at i:101860291 original size:40 final size:40
Alignment explanation
Indices: 101860236--101860315 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
101860226 GTTCAAATGA
101860236 GATGAAATTTACAGCAAAAAGGTCCGATACCCAGAAAGGT
1 GATGAAATTTACAGCAAAAAGGTCCGATACCCAGAAAGGT
101860276 GATGAAATTTACAGCAAAAAGGTCCGATACCCAGAAAGGT
1 GATGAAATTTACAGCAAAAAGGTCCGATACCCAGAAAGGT
101860316 ACAACAAGCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.17
Consensus pattern (40 bp):
GATGAAATTTACAGCAAAAAGGTCCGATACCCAGAAAGGT
Found at i:101869272 original size:26 final size:24
Alignment explanation
Indices: 101869243--101869292 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
101869233 AATAAAAAAA
* *
101869243 ATTTTAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
101869269 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
101869293 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:101869304 original size:22 final size:20
Alignment explanation
Indices: 101869232--101869307 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 20
101869222 TTATTTCATT
*
101869232 AAATAAAAAAAATTTTAAAA
1 AAATAAAAAAAATATTAAAA
*
101869252 TATAATAAATCAAATATATTTAAAA
1 -A-AATAAA--AAAAATA-TTAAAA
*
101869277 ACATAAAAACAAATATTAAAA
1 AAATAAAAA-AAATATTAAAA
101869298 CAAATAAAAA
1 -AAATAAAAA
101869308 TAACACTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
21 9 0.20
22 18 0.41
23 5 0.11
24 6 0.14
25 6 0.14
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (20 bp):
AAATAAAAAAAATATTAAAA
Found at i:101869398 original size:15 final size:16
Alignment explanation
Indices: 101869368--101869400 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
101869358 AAATATTTAT
101869368 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
101869385 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
101869400 A
1 A
101869401 AAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:101869966 original size:31 final size:31
Alignment explanation
Indices: 101869916--101869977 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
101869906 AAAATTTTCA
*
101869916 AATAAATTAGTAACCAATAAAA-AAGTTTACC
1 AATAAATTAATAACCAATAAAATAA-TTTACC
* *
101869947 AATAATTTAATAACTAATAAAATAATTTACC
1 AATAAATTAATAACCAATAAAATAATTTACC
101869978 CTATTTTAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.55, C:0.11, G:0.03, T:0.31
Consensus pattern (31 bp):
AATAAATTAATAACCAATAAAATAATTTACC
Found at i:101874777 original size:16 final size:17
Alignment explanation
Indices: 101874753--101874792 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
101874743 ACATGAGTAT
*
101874753 AATAATTAAAAA-AATA
1 AATATTTAAAAATAATA
101874769 AATATTTAAAAATAATA
1 AATATTTAAAAATAATA
*
101874786 TATATTT
1 AATATTT
101874793 TTTGTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AATATTTAAAAATAATA
Found at i:101881326 original size:31 final size:31
Alignment explanation
Indices: 101881253--101881370 Score: 100
Period size: 31 Copynumber: 3.9 Consensus size: 31
101881243 ATATTTGCGT
* * * * *
101881253 AAATTTTCATTAAA-CTTTTAAATTTTTTGA
1 AAATTTTAATTAAATCTCTCAAAATTTTTAA
* *
101881283 ATATTTTAATTAAATCTATCAAAATTTTTAA
1 AAATTTTAATTAAATCTCTCAAAATTTTTAA
*
101881314 AAATTATT-ATTAAAAT-TCTCAAAAATTTTAA
1 AAATT-TTAATT-AAATCTCTCAAAATTTTTAA
* *
101881345 ATATTTTAATT-AATCTCTTAAAATTT
1 AAATTTTAATTAAATCTCTCAAAATTT
101881371 AATGTCAAGA
Statistics
Matches: 71, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
29 3 0.04
30 23 0.32
31 39 0.55
32 6 0.08
ACGTcount: A:0.43, C:0.07, G:0.01, T:0.49
Consensus pattern (31 bp):
AAATTTTAATTAAATCTCTCAAAATTTTTAA
Found at i:101881326 original size:61 final size:61
Alignment explanation
Indices: 101881253--101881370 Score: 141
Period size: 61 Copynumber: 1.9 Consensus size: 61
101881243 ATATTTGCGT
* * ** *
101881253 AAATTTTCATTAAACTT-TTAAATTTTTTGAATATTTTAATTAAATCTATCAAAATTTTTAA
1 AAATTTTCATTAAAATTCTCAAAAATTTTAAATATTTTAATT-AATCTATCAAAATTTTTAA
* *
101881314 AAATTATT-ATTAAAATTCTCAAAAATTTTAAATATTTTAATTAATCTCTTAAAATTT
1 AAATT-TTCATTAAAATTCTCAAAAATTTTAAATATTTTAATTAATCTATCAAAATTT
101881371 AATGTCAAGA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
61 26 0.54
62 22 0.46
ACGTcount: A:0.43, C:0.07, G:0.01, T:0.49
Consensus pattern (61 bp):
AAATTTTCATTAAAATTCTCAAAAATTTTAAATATTTTAATTAATCTATCAAAATTTTTAA
Found at i:101881524 original size:14 final size:15
Alignment explanation
Indices: 101881500--101881530 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
101881490 TTTCAAGAAC
101881500 AAAAAATTTATAAAT
1 AAAAAATTTATAAAT
101881515 AAAAAA-TTATAAAT
1 AAAAAATTTATAAAT
101881529 AA
1 AA
101881531 TTATCATAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAAAATTTATAAAT
Found at i:101885209 original size:30 final size:29
Alignment explanation
Indices: 101885173--101885233 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
101885163 TAATTTTAAA
101885173 TAAAAAAACAAAAAAATATATATAATTTTT
1 TAAAAAAA-AAAAAAATATATATAATTTTT
* * *
101885203 T-AAAAAATAAAAATTATATATATTTTTT
1 TAAAAAAAAAAAAAATATATATAATTTTT
101885231 TAA
1 TAA
101885234 TATACAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 19 0.70
29 7 0.26
30 1 0.04
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (29 bp):
TAAAAAAAAAAAAAATATATATAATTTTT
Found at i:101885491 original size:21 final size:23
Alignment explanation
Indices: 101885456--101885499 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
101885446 GTTGAATCAC
101885456 TTTTTATAATTTTTAAT-ATTTTA
1 TTTTTAT-ATTTTTAATAATTTTA
101885479 TTTTTAT-TTTTTAATAATTTT
1 TTTTTATATTTTTAATAATTTT
101885500 TTTATAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTTTATATTTTTAATAATTTTA
Found at i:101888866 original size:14 final size:14
Alignment explanation
Indices: 101888847--101888873 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
101888837 TTTGGTATTT
101888847 TATTATTATTATAA
1 TATTATTATTATAA
101888861 TATTATTATTATA
1 TATTATTATTATA
101888874 TCATTCCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTATTATTATAA
Found at i:101890918 original size:17 final size:17
Alignment explanation
Indices: 101890896--101890929 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
101890886 GACGGGTTAT
101890896 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
101890913 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
101890930 GGCCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.41, T:0.53
Consensus pattern (17 bp):
TGGGTTGTTTGGTTTAG
Found at i:101891655 original size:16 final size:16
Alignment explanation
Indices: 101891608--101891669 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
101891598 TAAGTTTAGG
*
101891608 TTTAGTGTTCAAATCAT
1 TTTAG-GTTCAGATCAT
*
101891625 TTTAGGTT-TGAATCAT
1 TTTAGGTTCAG-ATCAT
101891641 TTTAGGTTCAGATCAT
1 TTTAGGTTCAGATCAT
**
101891657 TTTTTGTTCAGAT
1 TTTAGGTTCAGAT
101891670 AAAATTTATA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
16 32 0.84
17 6 0.16
ACGTcount: A:0.24, C:0.10, G:0.16, T:0.50
Consensus pattern (16 bp):
TTTAGGTTCAGATCAT
Found at i:101891727 original size:16 final size:16
Alignment explanation
Indices: 101891706--101891736 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
101891696 ATTACCTGGT
101891706 AATTATATCATTTTTG
1 AATTATATCATTTTTG
101891722 AATTATATCATTTTT
1 AATTATATCATTTTT
101891737 TTAAATATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.58
Consensus pattern (16 bp):
AATTATATCATTTTTG
Found at i:101893714 original size:6 final size:6
Alignment explanation
Indices: 101893703--101893730 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
101893693 AGAACTAAGC
101893703 TTGGTG TTGGTG TTGGTG TTGGTG TTGG
1 TTGGTG TTGGTG TTGGTG TTGGTG TTGG
101893731 GTGATTAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (6 bp):
TTGGTG
Found at i:101894478 original size:12 final size:12
Alignment explanation
Indices: 101894461--101894518 Score: 80
Period size: 12 Copynumber: 4.8 Consensus size: 12
101894451 AGCTGATTGT
101894461 TGTTGCTGCTGC
1 TGTTGCTGCTGC
* *
101894473 TGTTGCTGTTGT
1 TGTTGCTGCTGC
101894485 TGTTGCTGCTGC
1 TGTTGCTGCTGC
*
101894497 TGCTGCTGCTGC
1 TGTTGCTGCTGC
*
101894509 TGTTGTTGCT
1 TGTTGCTGCT
101894519 TGGAAGCAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.00, C:0.21, G:0.33, T:0.47
Consensus pattern (12 bp):
TGTTGCTGCTGC
Found at i:101894479 original size:6 final size:6
Alignment explanation
Indices: 101894461--101894513 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
101894451 AGCTGATTGT
* * * * *
101894461 TGTTGC TGCTGC TGTTGC TGTTGT TGTTGC TGCTGC TGCTGC TGCTGC
1 TGTTGC TGTTGC TGTTGC TGTTGC TGTTGC TGTTGC TGTTGC TGTTGC
101894509 TGTTG
1 TGTTG
101894514 TTGCTTGGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.00, C:0.21, G:0.34, T:0.45
Consensus pattern (6 bp):
TGTTGC
Found at i:101894485 original size:9 final size:9
Alignment explanation
Indices: 101894467--101894518 Score: 59
Period size: 9 Copynumber: 5.8 Consensus size: 9
101894457 TTGTTGTTGC
101894467 TGCTGCTGT
1 TGCTGCTGT
*
101894476 TGCTGTTGT
1 TGCTGCTGT
* *
101894485 TGTTGCTGC
1 TGCTGCTGT
*
101894494 TGCTGCTGC
1 TGCTGCTGT
101894503 TGCTGCTGT
1 TGCTGCTGT
*
101894512 TGTTGCT
1 TGCTGCT
101894519 TGGAAGCAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.00, C:0.21, G:0.33, T:0.46
Consensus pattern (9 bp):
TGCTGCTGT
Found at i:101894494 original size:3 final size:3
Alignment explanation
Indices: 101894464--101894510 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
101894454 TGATTGTTGT
* * * *
101894464 TGC TGC TGC TGT TGC TGT TGT TGT TGC TGC TGC TGC TGC TGC TGC TG
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TG
101894511 TTGTTGCTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.00, C:0.23, G:0.34, T:0.43
Consensus pattern (3 bp):
TGC
Found at i:101901189 original size:80 final size:80
Alignment explanation
Indices: 101901084--101901241 Score: 230
Period size: 80 Copynumber: 2.0 Consensus size: 80
101901074 CTATTCCTGA
* * * *
101901084 AATCCCCACATCTGATTTGAAAATGAAACCCT-AGCCTCAATTCCTTTGTCTTCCCTTCCCAATT
1 AATCCCCACATCCGATTTGAAAATGAAACCCTAAACC-AAATTCCTTCGTCTTCCCTTCCCAATT
101901148 CCTTCCTCTTCACTTT
65 CCTTCCTCTTCACTTT
*
101901164 AATCCCCA-ATTCCGATTTGAAAATGAAACCCTAAACCAAATTCCTTCGTCTTCCCTTCCCGATT
1 AATCCCCACA-TCCGATTTGAAAATGAAACCCTAAACCAAATTCCTTCGTCTTCCCTTCCCAATT
*
101901228 TCTTCCTCTTCACT
65 CCTTCCTCTTCACT
101901242 GCTGCATTTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
79 1 0.01
80 66 0.94
81 3 0.04
ACGTcount: A:0.24, C:0.35, G:0.06, T:0.35
Consensus pattern (80 bp):
AATCCCCACATCCGATTTGAAAATGAAACCCTAAACCAAATTCCTTCGTCTTCCCTTCCCAATTC
CTTCCTCTTCACTTT
Found at i:101902377 original size:29 final size:29
Alignment explanation
Indices: 101902335--101902392 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
101902325 TGAGATAATT
101902335 CCAAGGAAAGACATGCTATAATTGGTGAC
1 CCAAGGAAAGACATGCTATAATTGGTGAC
101902364 CCAAGGAAAGACATGCTATAATTGGTGAC
1 CCAAGGAAAGACATGCTATAATTGGTGAC
101902393 ACCTCTTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (29 bp):
CCAAGGAAAGACATGCTATAATTGGTGAC
Found at i:101903035 original size:38 final size:40
Alignment explanation
Indices: 101902992--101903073 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 40
101902982 GGACCTATCA
101902992 GGTACTT-A-ACATACATATTATTGGAGGGATTTGTTGGG
1 GGTACTTAATACATACATATTATTGGAGGGATTTGTTGGG
101903030 GGTACTTAACATACATACATATTATTGGAGGGATTTGTTGGG
1 GGTACTT-A-ATACATACATATTATTGGAGGGATTTGTTGGG
101903072 GG
1 GG
101903074 ACGTAATGGC
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
38 7 0.17
41 1 0.03
42 32 0.80
ACGTcount: A:0.27, C:0.09, G:0.29, T:0.35
Consensus pattern (40 bp):
GGTACTTAATACATACATATTATTGGAGGGATTTGTTGGG
Found at i:101908316 original size:23 final size:23
Alignment explanation
Indices: 101908289--101908344 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
101908279 ATATCCAAAT
* *
101908289 AACATTAAAAGCGATAGCAAAAC
1 AACATTAAAAACAATAGCAAAAC
101908312 AACATTAAAAACAATAGCAAAAC
1 AACATTAAAAACAATAGCAAAAC
*
101908335 AATA-TAAAAA
1 AACATTAAAAA
101908345 TGCACAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 6 0.20
23 24 0.80
ACGTcount: A:0.64, C:0.14, G:0.07, T:0.14
Consensus pattern (23 bp):
AACATTAAAAACAATAGCAAAAC
Found at i:101913856 original size:15 final size:16
Alignment explanation
Indices: 101913831--101913863 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
101913821 GCCTATATTT
101913831 TAATATATTATACATA
1 TAATATATTATACATA
*
101913847 TAATAT-TTATATATA
1 TAATATATTATACATA
101913862 TA
1 TA
101913864 GTACGTACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TAATATATTATACATA
Found at i:101913860 original size:24 final size:21
Alignment explanation
Indices: 101913813--101913862 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 21
101913803 TATATCTACG
* *
101913813 TATATTATGCCTATATTTTAA
1 TATATTATACATATATTTTAA
101913834 TATATTATACATATAATATTTATA
1 TATATTATACATAT-AT-TTTA-A
101913858 TATAT
1 TATAT
101913863 AGTACGTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 12 0.50
22 2 0.08
23 4 0.17
24 6 0.25
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (21 bp):
TATATTATACATATATTTTAA
Found at i:101915290 original size:6 final size:7
Alignment explanation
Indices: 101915280--101915347 Score: 50
Period size: 7 Copynumber: 9.1 Consensus size: 7
101915270 TTATTTTCTT
101915280 TTTTTAA
1 TTTTTAA
101915287 TTTTTAA
1 TTTTTAA
101915294 TTTATATATA
1 TTT-T-TA-A
101915304 TTTTTAA
1 TTTTTAA
101915311 TTTTTATA
1 TTTTTA-A
*
101915319 TATTT-A
1 TTTTTAA
*
101915325 TTTCT-A
1 TTTTTAA
101915331 TTTTTCATA
1 TTTTT-A-A
101915340 TTTTTAA
1 TTTTTAA
101915347 T
1 T
101915348 GTGTACATAC
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
6 9 0.18
7 19 0.38
8 9 0.18
9 9 0.18
10 4 0.08
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTTTAA
Found at i:101915318 original size:19 final size:17
Alignment explanation
Indices: 101915286--101915323 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
101915276 TCTTTTTTTA
101915286 ATTTTTAATTTATATAT
1 ATTTTTAATTTATATAT
*
101915303 ATTTTTAATTTTTATAT
1 ATTTTTAATTTATATAT
101915320 ATTT
1 ATTT
101915324 ATTTCTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTAATTTATATAT
Found at i:101915326 original size:21 final size:21
Alignment explanation
Indices: 101915286--101915345 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
101915276 TCTTTTTTTA
101915286 ATTTTTAA--TTTATATA--T
1 ATTTTTAATTTTTATATATTT
101915303 ATTTTTAATTTTTATATATTT
1 ATTTTTAATTTTTATATATTT
* *
101915324 ATTTCT-ATTTTTCATATTTTT
1 ATTTTTAATTTTT-ATATATTT
101915345 A
1 A
101915346 ATGTGTACAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
17 8 0.22
19 8 0.22
20 6 0.17
21 14 0.39
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.68
Consensus pattern (21 bp):
ATTTTTAATTTTTATATATTT
Found at i:101916223 original size:127 final size:127
Alignment explanation
Indices: 101916028--101916330 Score: 408
Period size: 127 Copynumber: 2.4 Consensus size: 127
101916018 TCCAACGAAA
*
101916028 AAATCGAAACCCAGCACGGTAGGGCACGATTCTTCGAATTTCCAAACATTGAACATTACCTCGCT
1 AAATCGAAACCCAGCACGATAGGGCACGATTCTTCGAATTTCCAAACATTGAACATTACCTCGCT
* * *
101916093 TTAGCATTTAGAAAATACAAATGAAATTCTAAAGGAATATTCAACTATTTTGAGCAAACCGG
66 TTAGCATTTAGAAAACACAAATAAAATTCTAAAGGAATATTCAACTATTTTGAACAAACCGG
* * ** * * ** * *
101916155 AAATCGAAACCCAACACGATTGGGCACGATTCCCCGAATTTCTAAACATTGAATATTGTCTTGTT
1 AAATCGAAACCCAGCACGATAGGGCACGATTCTTCGAATTTCCAAACATTGAACATTACCTCGCT
* * * * * *
101916220 TTAGCATTTGGAAAACGCGAATAAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGGG
66 TTAGCATTTAGAAAACACAAATAAAATTCTAAAGGAATATTCAACTATTTTGAACAAACCGG
* *
101916282 AAATCAAAAGCCAGCACGATAGGGCACGATTCTTCGAATTTCCAAACAT
1 AAATCGAAACCCAGCACGATAGGGCACGATTCTTCGAATTTCCAAACAT
101916331 CAAACATTGC
Statistics
Matches: 149, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
127 149 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (127 bp):
AAATCGAAACCCAGCACGATAGGGCACGATTCTTCGAATTTCCAAACATTGAACATTACCTCGCT
TTAGCATTTAGAAAACACAAATAAAATTCTAAAGGAATATTCAACTATTTTGAACAAACCGG
Found at i:101919201 original size:13 final size:13
Alignment explanation
Indices: 101919179--101919220 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
101919169 TTGATTTTTG
*
101919179 AAAAATAAATTGA
1 AAAAAGAAATTGA
101919192 AAAAAGAAATTGA
1 AAAAAGAAATTGA
*
101919205 AAAGCAGAAATT-A
1 AAA-AAGAAATTGA
101919218 AAA
1 AAA
101919221 GACCTCAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 19 0.73
14 7 0.27
ACGTcount: A:0.69, C:0.02, G:0.12, T:0.17
Consensus pattern (13 bp):
AAAAAGAAATTGA
Found at i:101919213 original size:14 final size:14
Alignment explanation
Indices: 101919185--101919222 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
101919175 TTTGAAAAAT
101919185 AAATTGAAAA-AAG
1 AAATTGAAAAGAAG
*
101919198 AAATTGAAAAGCAG
1 AAATTGAAAAGAAG
101919212 AAATT-AAAAGA
1 AAATTGAAAAGA
101919223 CCTCAGCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.66, C:0.03, G:0.16, T:0.16
Consensus pattern (14 bp):
AAATTGAAAAGAAG
Found at i:101919333 original size:73 final size:74
Alignment explanation
Indices: 101919243--101919424 Score: 258
Period size: 75 Copynumber: 2.5 Consensus size: 74
101919233 TGAGCTGAGG
* * *
101919243 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACA-GAAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACAGGAAATTAAAAATACCTCAGCGT
101919307 GTCCCGAGA
66 GTCCCGAGA
* * *
101919316 CTCAACTCACCTTTCGCAATATGAGTTGATTTTTTGAAAAACAGGAATTTAAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAAAAACAGGAAATTAAAAATACCTCAGCG
** *
101919381 TGTCTTGAGG
65 TGTCCCGAGA
*
101919391 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTAATTTTT
101919425 TTTTACGAAC
Statistics
Matches: 95, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
73 26 0.27
74 18 0.19
75 51 0.54
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (74 bp):
CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACAGGAAATTAAAAATACCTCAGCGT
GTCCCGAGA
Done.