Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 315 of 343
Found at i:101919450 original size:14 final size:14
Alignment explanation
Indices: 101919431--101919458 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
101919421 TTTTTTTTAC
101919431 GAACAGAAATTGAA
1 GAACAGAAATTGAA
101919445 GAACAGAAATTGAA
1 GAACAGAAATTGAA
101919459 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:101919558 original size:165 final size:165
Alignment explanation
Indices: 101919281--101919589 Score: 469
Period size: 165 Copynumber: 1.9 Consensus size: 165
101919271 ATTTTTGACA
** * * *
101919281 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGACTCAACTCACCTTTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGAA
* **
101919346 TTTTTGAAAAACAGGAATTTAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
66 TTTTTGAAAAACAGGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
101919411 ATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
131 ATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
* *
101919446 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-
1 AACAGAAATTGAAAAGACCTCAGC--GTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTG
* * *
101919510 AATTTTTGACAAACA-GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
64 AATTTTTGAAAAACAGGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
101919574 ATATGAGTTGATTTTT
129 ATATGAGTTGATTTTT
101919590 GAAAAACAGA
Statistics
Matches: 129, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
165 82 0.64
166 13 0.10
167 34 0.26
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (165 bp):
AACAGAAATTGAAAAGACCTCAGCGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGAA
TTTTTGAAAAACAGGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
Found at i:101919571 original size:73 final size:73
Alignment explanation
Indices: 101919440--101919663 Score: 340
Period size: 74 Copynumber: 3.0 Consensus size: 73
101919430 CGAACAGAAA
* * **
101919440 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
*
101919505 GAGTTAATTT
64 GAGTTGATTT
* *
101919515 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
101919580 GTTGATTT
66 GTTGATTT
* *
101919588 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
101919653 AGTTGATTT
65 AGTTGATTT
101919662 TT
1 TT
101919664 TTTTACGAAC
Statistics
Matches: 137, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
73 53 0.39
74 58 0.42
75 26 0.19
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:101919641 original size:239 final size:238
Alignment explanation
Indices: 101919196--101919900 Score: 1207
Period size: 239 Copynumber: 3.0 Consensus size: 238
101919186 AATTGAAAAA
*
101919196 AGAAATTGAAAAGCAGAAATT-AAAAGACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGC
1 AGAAATTGAAAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGC
*
101919260 AATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGACTCAACTCA
65 AATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCA
* * *
101919325 CCTTTCGCAATATGAGTTGATTTTTTGAAAAACAGGAATTTAAAAATACCTCAGCGTGTCTTGAG
130 CCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAG
101919390 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAAC
194 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAAC
101919435 AGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGC
1 AGAAATTGAA-AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGC
101919500 AATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCA
65 AATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCA
101919565 CCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGG
130 CCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGG
101919630 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAAC
195 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAAC
* * * *
101919674 ATAAATTGAAAAACATAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCCACTCACCTCTAGC
1 AGAAATTG-AAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGC
* ***
101919739 AATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTTTTGAGGCTCAACTCA
65 AATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCA
* * *
101919804 CCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGG
130 CCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGG
*
101919868 CTCAACTCACCTCTAGCAATATGAGTTGATTTT
195 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
101919901 GAAAAACAAA
Statistics
Matches: 446, Mismatches: 17, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
238 57 0.13
239 260 0.58
240 129 0.29
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.28
Consensus pattern (238 bp):
AGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCA
ATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAAC
Found at i:101919690 original size:14 final size:14
Alignment explanation
Indices: 101919671--101919699 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
101919661 TTTTTTTACG
101919671 AACATAAATTGAAA
1 AACATAAATTGAAA
101919685 AACATAAATTGAAA
1 AACATAAATTGAAA
101919699 A
1 A
101919700 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
AACATAAATTGAAA
Found at i:101919744 original size:92 final size:91
Alignment explanation
Indices: 101919588--101919755 Score: 241
Period size: 92 Copynumber: 1.8 Consensus size: 91
101919578 GAGTTGATTT
* * *
101919588 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTAGCAATATG
101919653 AGTTGATTTTTTTTTACGAACATAAA
66 AGTTGATTTTTTTTTACGAACATAAA
* * *
101919679 TTGAAAAACATAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCCACTCACCTCTAGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTAGCAAT
101919742 ATGAGTTGATTTTT
63 ATGAGTTGATTTTT
101919756 GACAAACAGA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
90 14 0.21
91 13 0.19
92 39 0.57
93 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (91 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTAGCAATATG
AGTTGATTTTTTTTTACGAACATAAA
Found at i:101919944 original size:72 final size:73
Alignment explanation
Indices: 101919718--101919972 Score: 386
Period size: 73 Copynumber: 3.5 Consensus size: 73
101919708 CATGTGAGCC
*
101919718 GAGGCTCCACTCACCTCTAGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG
1 GAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG
*
101919783 CGTGTTTT
66 CGTGTCTT
*
101919791 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG
1 GAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG
*
101919856 CGTGTCCT
66 CGTGTCTT
* * * * * *
101919864 GAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGTATCTCAA
1 GAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG
101919928 CGTGTCTT
66 CGTGTCTT
* * *
101919936 GAGACTCAACTCATCTCTCGCAATATGAGTTGATTTT
1 GAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
101919973 CCTTGAAAAG
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
72 62 0.37
73 104 0.63
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (73 bp):
GAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG
CGTGTCTT
Found at i:101920308 original size:19 final size:19
Alignment explanation
Indices: 101920284--101920322 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
101920274 TCTTCAAGCT
101920284 TCACGAGTAATCGACGTTC
1 TCACGAGTAATCGACGTTC
101920303 TCACGAGTAATCGACGTTC
1 TCACGAGTAATCGACGTTC
101920322 T
1 T
101920323 TCAGATAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (19 bp):
TCACGAGTAATCGACGTTC
Found at i:101928176 original size:12 final size:12
Alignment explanation
Indices: 101928156--101928191 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
101928146 TGGGATATGC
*
101928156 AATGTATGAATG
1 AATGCATGAATG
101928168 AATGCATGAATG
1 AATGCATGAATG
101928180 AATGCATGAATG
1 AATGCATGAATG
101928192 TCAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:101932299 original size:20 final size:20
Alignment explanation
Indices: 101932276--101932318 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
101932266 ATACGTAATA
*
101932276 ATAGGAATAAAAGTATATAC
1 ATAGGAATAAAAATATATAC
* *
101932296 ATAGTATTAAAAATATATAC
1 ATAGGAATAAAAATATATAC
101932316 ATA
1 ATA
101932319 ATATAGCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.56, C:0.05, G:0.09, T:0.30
Consensus pattern (20 bp):
ATAGGAATAAAAATATATAC
Found at i:101932304 original size:45 final size:45
Alignment explanation
Indices: 101932255--101932343 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
101932245 TATAAATATA
* * * *
101932255 TATT-AAAATATATACGTAATAATAGGAATAAAAGTATATACATAG
1 TATTAAAAATATATACATAAT-ATAGCAATAAAAATACATACATAG
*
101932300 TATTAAAAATATATACATAATATAGCATTAAAAATACATACATA
1 TATTAAAAATATATACATAATATAGCAATAAAAATACATACATA
101932344 ATATAGTTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
45 23 0.61
46 15 0.39
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.31
Consensus pattern (45 bp):
TATTAAAAATATATACATAATATAGCAATAAAAATACATACATAG
Found at i:101932324 original size:25 final size:25
Alignment explanation
Indices: 101932249--101932442 Score: 147
Period size: 25 Copynumber: 7.9 Consensus size: 25
101932239 ACGATATATA
*
101932249 AATATA-TATT-AAAATATATACGT
1 AATATAGTATTAAAAATATATACAT
* * *
101932272 AATAATAGGAATAAAAGTATATAC--
1 AAT-ATAGTATTAAAAATATATACAT
101932296 ---ATAGTATTAAAAATATATACAT
1 AATATAGTATTAAAAATATATACAT
* *
101932318 AATATAGCATTAAAAATACATACAT
1 AATATAGTATTAAAAATATATACAT
101932343 AATATAGTTATT-AAAATATATACAT
1 AATATAG-TATTAAAAATATATACAT
* * *
101932368 AAGATAATATGTAAGAAAAAATATA-ATT
1 AATATAGTAT-T-A-AAAATATATACA-T
* *
101932396 GATATAGTATTAAAGATATATACAT
1 AATATAGTATTAAAAATATATACAT
*
101932421 AATATA-TATAAAAAATCATATA
1 AATATAGTATTAAAAAT-ATATA
101932443 TACATGATAT
Statistics
Matches: 134, Mismatches: 21, Indels: 30
0.72 0.11 0.16
Matches are distributed among these distances:
20 17 0.13
23 3 0.02
24 14 0.10
25 66 0.49
26 15 0.11
27 2 0.01
28 17 0.13
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.33
Consensus pattern (25 bp):
AATATAGTATTAAAAATATATACAT
Found at i:101932598 original size:24 final size:23
Alignment explanation
Indices: 101932566--101932765 Score: 106
Period size: 23 Copynumber: 8.9 Consensus size: 23
101932556 ATAGTATTAG
101932566 AAATATATACATAAGATAGTATAA
1 AAATATATACATAAGATA-TATAA
101932590 AAATATATA-ACTAACGATAT-T-A
1 AAATATATACA-TAA-GATATATAA
101932612 AAATATATACATCATA-ATATAT-A
1 AAATATATACAT-A-AGATATATAA
*
101932635 AAA-ATATA-AT---ATTTA-AA
1 AAATATATACATAAGATATATAA
* * *
101932652 AAGTATGTACATAACATATATAA
1 AAATATATACATAAGATATATAA
* *
101932675 AAATATATACATAATATAGTATTTA
1 AAATATATACATAAGATA-TA-TAA
* * *
101932700 AAATATTTACATAATAATAGGAATAA
1 AAATATATACATAA-GATA--TATAA
101932726 AAAGTATATACAT-AG-TAT-T-A
1 AAA-TATATACATAAGATATATAA
*
101932746 AAATATATACATAATATATA
1 AAATATATACATAAGATATA
101932766 CATATTAGAA
Statistics
Matches: 139, Mismatches: 16, Indels: 44
0.70 0.08 0.22
Matches are distributed among these distances:
17 7 0.05
18 4 0.03
19 11 0.08
20 5 0.04
21 6 0.04
22 24 0.17
23 26 0.19
24 18 0.13
25 19 0.14
26 9 0.06
27 10 0.07
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.34
Consensus pattern (23 bp):
AAATATATACATAAGATATATAA
Found at i:101932710 original size:25 final size:24
Alignment explanation
Indices: 101932627--101932765 Score: 85
Period size: 25 Copynumber: 5.8 Consensus size: 24
101932617 TATACATCAT
*
101932627 AATATATA-AAAATATAATATTTAAA
1 AATATATACATAATAT-ATATTT-AA
* * *
101932652 AAGTATGTACATAACATATA-TAAA
1 AA-TATATACATAATATATATTTAA
101932676 AATATATACATAATATAGTATTTAA
1 AATATATACATAATATA-TATTTAA
* * * *
101932701 AATATTTACATAATAATAGGAATAAA
1 AATATATACATAAT-ATA-TATTTAA
*
101932727 AAGTATATAC---ATA-GTA-TTAA
1 AA-TATATACATAATATATATTTAA
101932747 AATATATACATAATATATA
1 AATATATACATAATATATA
101932766 CATATTAGAA
Statistics
Matches: 88, Mismatches: 16, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
19 7 0.08
20 5 0.06
21 1 0.01
22 3 0.03
23 16 0.18
24 8 0.09
25 19 0.22
26 18 0.20
27 11 0.12
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (24 bp):
AATATATACATAATATATATTTAA
Found at i:101932740 original size:21 final size:19
Alignment explanation
Indices: 101932720--101932758 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
101932710 ATAATAATAG
101932720 GAATAAAAAGTATATACATA
1 GAATAAAAA-TATATACATA
* *
101932740 GTATTAAAATATATACATA
1 GAATAAAAATATATACATA
101932759 ATATATACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (19 bp):
GAATAAAAATATATACATA
Found at i:101932761 original size:11 final size:11
Alignment explanation
Indices: 101932730--101932769 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
101932720 GAATAAAAAG
*
101932730 TATATACATAG
1 TATATACATAA
101932741 TAT-TA-A-AA
1 TATATACATAA
101932749 TATATACATAA
1 TATATACATAA
101932760 TATATACATA
1 TATATACATA
101932770 TTAGAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
8 4 0.16
9 3 0.12
10 3 0.12
11 15 0.60
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.38
Consensus pattern (11 bp):
TATATACATAA
Found at i:101932770 original size:19 final size:19
Alignment explanation
Indices: 101932725--101932762 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
101932715 AATAGGAATA
*
101932725 AAAAGTATATACATAGTATT
1 AAAA-TATATACATAATATT
101932745 AAAATATATACATAATAT
1 AAAATATATACATAATAT
101932763 ATACATATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.34
Consensus pattern (19 bp):
AAAATATATACATAATATT
Found at i:101932856 original size:26 final size:25
Alignment explanation
Indices: 101932815--101932979 Score: 124
Period size: 26 Copynumber: 6.6 Consensus size: 25
101932805 ATAAATATGC
*
101932815 ACAT-ATAT-ATATTAAAAATTTAT
1 ACATAATATGATATTAAAAATATAT
*
101932838 ACATAATAATGATATTAAAAGTATAT
1 ACATAAT-ATGATATTAAAAATATAT
* * *
101932864 ACGTAATAT-AGTGTTAAAAATACAT
1 ACATAATATGA-TATTAAAAATATAT
*
101932889 ACATAATATAGTTATTAAAAATATAT
1 ACATAATAT-GATATTAAAAATATAT
* * *
101932915 ACATAAGATAATATGTAAGAAAAAATAT
1 ACATAATATGATAT-T-A-AAAATATAT
* * * *
101932943 AAATAATATAATATT-AAGATATTT
1 ACATAATATGATATTAAAAATATAT
101932967 ACATAATAT-ATAT
1 ACATAATATGATAT
101932980 ACATATTAGA
Statistics
Matches: 113, Mismatches: 20, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
23 8 0.07
24 17 0.15
25 26 0.23
26 40 0.35
27 2 0.02
28 20 0.18
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (25 bp):
ACATAATATGATATTAAAAATATAT
Found at i:101932948 original size:28 final size:28
Alignment explanation
Indices: 101932905--101932961 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
101932895 TATAGTTATT
*
101932905 AAAAATATATACATAAGATAATATGTAAG
1 AAAAATATATAAATAAGATAATAT-TAAG
*
101932934 AAAAA-ATATAAATAATATAATATTAAG
1 AAAAATATATAAATAAGATAATATTAAG
101932961 A
1 A
101932962 TATTTACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 5 0.19
28 16 0.62
29 5 0.19
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (28 bp):
AAAAATATATAAATAAGATAATATTAAG
Found at i:101933025 original size:213 final size:200
Alignment explanation
Indices: 101932672--101933068 Score: 440
Period size: 213 Copynumber: 1.9 Consensus size: 200
101932662 ATAACATATA
* * * * *
101932672 TAAAAATATATACATAATATAGTATTTAAAATATTTACATAATAATAGGAATAAAAAGTATATAC
1 TAAAAATACATACATAATATAGTATTAAAAATATATACATAATAATAGGAAGAAAAAATATATAC
* * * *
101932737 ATAGTATTAAAATATATACATAATATATACATATTAGAAATAATAACAATATTAAAAACAACTAT
66 ATAATATTAAAATATATACATAATATATACATATTAGAAAGAATAACAATACTAAAAACAACTAC
* **
101932802 TACATAAATATGCACATATATATATTAAAAATTTATACATAATAATGATATTAAAAGTATATACG
131 TACATAAATAT--ACACATATATATT-AAAATAAATACATAAT-A--ATATTAAAAGTATATACG
101932867 TAATATAGTGT
190 TAATATAGTGT
*
101932878 TAAAAATACATACATAATATAGTTATTAAAAATATATACATAAGATAATATGTAAGAAAAAATAT
1 TAAAAATACATACATAATATAG-TATTAAAAATATATACAT-A-ATAATA-GGAAGAAAAAATAT
* * * * *
101932943 AAATAATATAATATTAAGATATTTACATAATATATATACATATTAG-AAGAA-AAGAATGACTAT
62 --AT-ACATAATATTAAAATATATACAT-A-ATATATACATATTAGAAAGAATAACAAT-ACTAA
* * *
101933006 TAATAA-TACTACATAAATATATACATATATATTAAAATAAATACATAATAATATTAAAAGTAT
121 AAACAACTACTACATAAATATACACATATATATTAAAATAAATACATAATAATATTAAAAGTAT
101933069 GTATATAAAA
Statistics
Matches: 160, Mismatches: 21, Indels: 19
0.80 0.10 0.09
Matches are distributed among these distances:
206 21 0.13
207 29 0.18
208 1 0.01
209 7 0.04
210 25 0.16
211 11 0.07
212 2 0.01
213 37 0.23
214 12 0.08
215 15 0.09
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.34
Consensus pattern (200 bp):
TAAAAATACATACATAATATAGTATTAAAAATATATACATAATAATAGGAAGAAAAAATATATAC
ATAATATTAAAATATATACATAATATATACATATTAGAAAGAATAACAATACTAAAAACAACTAC
TACATAAATATACACATATATATTAAAATAAATACATAATAATATTAAAAGTATATACGTAATAT
AGTGT
Found at i:101933049 original size:20 final size:22
Alignment explanation
Indices: 101933018--101933064 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 22
101933008 ATAATACTAC
*
101933018 ATAAATATATACATATATATTAAA
1 ATAAATACATA-ATA-ATATTAAA
101933042 ATAAATACATAATAATATTAAA
1 ATAAATACATAATAATATTAAA
101933064 A
1 A
101933065 GTATGTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.41
23 3 0.14
24 10 0.45
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (22 bp):
ATAAATACATAATAATATTAAA
Found at i:101933354 original size:18 final size:18
Alignment explanation
Indices: 101933331--101933404 Score: 50
Period size: 18 Copynumber: 4.2 Consensus size: 18
101933321 ATATACGATG
101933331 ATAATAATAATGTTAATA
1 ATAATAATAATGTTAATA
* *
101933349 ATAATATTAATAG-TAGTA
1 ATAATAATAAT-GTTAATA
*
101933367 A-ATATAATAATATATAA-A
1 ATA-ATAATAATGT-TAATA
101933385 A-AATAATTAAT-TTAATA
1 ATAATAA-TAATGTTAATA
101933402 ATA
1 ATA
101933405 GAGAAATGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
16 3 0.07
17 8 0.18
18 30 0.68
19 3 0.07
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (18 bp):
ATAATAATAATGTTAATA
Found at i:101935650 original size:22 final size:22
Alignment explanation
Indices: 101935608--101935651 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
101935598 TTGCTATTCC
101935608 GTTGTTTTTTGTTTCTATTTGCT
1 GTTGTTTTTTG-TTCTATTTGCT
*
101935631 GTTGTTTTCTTG-TCTGTTTGC
1 GTTGTTTT-TTGTTCTATTTGC
101935652 ATGTATGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 8 0.42
23 8 0.42
24 3 0.16
ACGTcount: A:0.02, C:0.11, G:0.20, T:0.66
Consensus pattern (22 bp):
GTTGTTTTTTGTTCTATTTGCT
Found at i:101937887 original size:3 final size:3
Alignment explanation
Indices: 101937881--101937943 Score: 51
Period size: 3 Copynumber: 21.7 Consensus size: 3
101937871 TTCTAATACC
* * **
101937881 ATT ATT ATT -TT ATT ATT ACT ATT ATT -TCT ATT ATT ATT ATG GCT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT
*
101937925 ATT ATT -TT ATT ATG ATT AT
1 ATT ATT ATT ATT ATT ATT AT
101937944 ATTTCTTTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
2 5 0.11
3 40 0.87
4 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:101937914 original size:18 final size:17
Alignment explanation
Indices: 101937883--101937916 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
101937873 CTAATACCAT
101937883 TATTATTTTATTATTAC
1 TATTATTTTATTATTAC
101937900 TATTATTTCTATTATTA
1 TATTATTT-TATTATTA
101937917 TTATGGCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (17 bp):
TATTATTTTATTATTAC
Found at i:101939524 original size:21 final size:21
Alignment explanation
Indices: 101939498--101939537 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
101939488 TAAGGAGGGA
101939498 AAAATAACAAAAAATAGCATT
1 AAAATAACAAAAAATAGCATT
101939519 AAAATAACAAAAAATAGCA
1 AAAATAACAAAAAATAGCA
101939538 GATTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.70, C:0.10, G:0.05, T:0.15
Consensus pattern (21 bp):
AAAATAACAAAAAATAGCATT
Found at i:101940105 original size:2 final size:2
Alignment explanation
Indices: 101940098--101940127 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
101940088 CTAGAGATCC
*
101940098 TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
101940128 GAATAAGTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:101954532 original size:93 final size:93
Alignment explanation
Indices: 101954417--101954587 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
101954407 GCCCATAAGT
* *
101954417 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101954482 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
101954510 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101954575 CGAGTTCGGATGC
66 CGAGTTCGGATGC
101954588 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:101954584 original size:46 final size:46
Alignment explanation
Indices: 101954409--101954584 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
101954399 TGTAACCCGC
* * *
101954409 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
101954455 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
101954505 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
101954548 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
101954585 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 64 0.58
47 29 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:101962024 original size:45 final size:45
Alignment explanation
Indices: 101961960--101962133 Score: 219
Period size: 45 Copynumber: 3.8 Consensus size: 45
101961950 TGTAACCCGC
* *
101961960 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
*
101962005 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--T
* * *
101962051 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCAT
101962098 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
101962134 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.34
46 31 0.28
47 31 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
Found at i:101962126 original size:93 final size:92
Alignment explanation
Indices: 101961968--101962137 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 92
101961958 GCCCATAAGT
*
101961968 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
101962033 GAGTTCGGATGCCTAGTTACATTTCAC
66 GAGTTCGGATGCCTAGTTACATTTCAC
*
101962060 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101962125 CGAGTTCGGATGC
65 CGAGTTCGGATGC
101962138 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 27 0.36
93 48 0.64
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAC
Found at i:101964091 original size:131 final size:131
Alignment explanation
Indices: 101963840--101964091 Score: 285
Period size: 131 Copynumber: 1.9 Consensus size: 131
101963830 TTCTTCAAGT
* * * *
101963840 CGAAGACAGGATTCGATGTTTGGAAATTCGCGGAATCGTGCCGTAATGTGTTGGGTGTCAATTCC
1 CGAAGACAGGATTCGATATTTAGAAATTCGCGGAATCGTGCCCTAACGTGTTGGGTGTCAATTCC
* * * *
101963905 ACGTTTGCTCAAAATAATCGAATATCATTTCAAAATTTCAATCACGCCTTTTAAAATTCCTCAAA
66 ACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTCCAATCACACCTTCTAAAATTCCTCAAA
101963970 A
131 A
*
101963971 CGAAGACAAGG-TTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGT-TGCAATT
1 CGAAGAC-AGGATTCGATATTTAGAAATTCGCGGAATCGTGCCCTAACGTGTTGGGTGT-CAATT
*** * ** * * * *
101964034 TTGCGTTTGCTCAAAATATTCGGGCT-TCCCTTCAAAATTCCATTCATATCTTCTAAAA
64 CCACGTTTGCTCAAAATAATC-GAATATCACTTCAAAATTCCAATCACACCTTCTAAAA
101964092 AATTTTTAAA
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
130 1 0.01
131 93 0.94
132 5 0.05
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (131 bp):
CGAAGACAGGATTCGATATTTAGAAATTCGCGGAATCGTGCCCTAACGTGTTGGGTGTCAATTCC
ACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTCCAATCACACCTTCTAAAATTCCTCAAA
A
Found at i:101967451 original size:21 final size:22
Alignment explanation
Indices: 101967408--101967451 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
101967398 AGATATATGT
* * *
101967408 ATATATATAATATAATATTAAA
1 ATATATATAATACAACATAAAA
101967430 ATATA-ATAATACAACATAAAA
1 ATATATATAATACAACATAAAA
101967451 A
1 A
101967452 AAACATGATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (22 bp):
ATATATATAATACAACATAAAA
Found at i:101967619 original size:19 final size:21
Alignment explanation
Indices: 101967578--101967634 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 21
101967568 ATTACCTAGG
*
101967578 TATATACATATATATCAAGTA
1 TATATACATATATATCAAATA
*
101967599 TATATACGTAT-TAT-AAATA
1 TATATACATATATATCAAATA
*
101967618 TATA-A-ATATATAACAAA
1 TATATACATATATATCAAA
101967635 GCATAAACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
17 3 0.10
18 3 0.10
19 11 0.37
20 3 0.10
21 10 0.33
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.37
Consensus pattern (21 bp):
TATATACATATATATCAAATA
Found at i:101967797 original size:31 final size:31
Alignment explanation
Indices: 101967773--101967845 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 31
101967763 ACACACGTAC
101967773 ATAATAAAAATA-T-ATACTAATACACAATA
1 ATAATAAAAATAGTAATACTAATACACAATA
* *
101967802 ATAATAATAATAGTAATACTAATAATACTAATA
1 ATAATAAAAATAGTAATACTAAT-ACAC-AATA
101967835 AT-ATAAAAATA
1 ATAATAAAAATA
101967846 ACAAGGATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 11 0.30
30 1 0.03
31 8 0.22
32 11 0.30
33 6 0.16
ACGTcount: A:0.62, C:0.07, G:0.01, T:0.30
Consensus pattern (31 bp):
ATAATAAAAATAGTAATACTAATACACAATA
Found at i:101967806 original size:3 final size:3
Alignment explanation
Indices: 101967773--101967846 Score: 60
Period size: 3 Copynumber: 24.3 Consensus size: 3
101967763 ACACACGTAC
* * * *
101967773 ATA ATA AAA ATA TATA CTA ATA CACA ATA ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * *
101967820 CTA ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
101967847 CAAGGATATT
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
2 2 0.04
3 47 0.87
4 5 0.09
ACGTcount: A:0.62, C:0.07, G:0.01, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:101968532 original size:15 final size:15
Alignment explanation
Indices: 101968512--101968549 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
101968502 GTACAAGTTG
101968512 CTTTCTGTTTTTCTA
1 CTTTCTGTTTTTCTA
101968527 CTTTCTGTTTTTCTA
1 CTTTCTGTTTTTCTA
101968542 CTTTCTGT
1 CTTTCTGT
101968550 CTTGTCTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.05, C:0.21, G:0.08, T:0.66
Consensus pattern (15 bp):
CTTTCTGTTTTTCTA
Found at i:101978706 original size:44 final size:44
Alignment explanation
Indices: 101978639--101978997 Score: 558
Period size: 44 Copynumber: 8.2 Consensus size: 44
101978629 TTGGCGAATC
* * *
101978639 TAGCAGATTTGGCATCTCCGTATTGGCAGAGAGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA
* *
101978683 TAGTAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGG
1 TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA
*
101978727 TAGCAGATTTGGCGTCTCTGTATTAGCGGAGAGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA
101978771 TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA
* * *
101978815 TAGTAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAAA
1 TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA
* * *
101978859 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCAAATA
1 TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA
*
101978903 TAGCAGATTTGGCGTCTTTGTATTGGCGGA-AGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA
* * *
101978946 TAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAAA
1 TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA
*
101978990 TAACAGAT
1 TAGCAGAT
101978998 GGGTGTTCCT
Statistics
Matches: 288, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
43 38 0.13
44 250 0.87
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (44 bp):
TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGA
Found at i:101982177 original size:131 final size:131
Alignment explanation
Indices: 101981937--101982177 Score: 306
Period size: 131 Copynumber: 1.8 Consensus size: 131
101981927 CGAAGCCGGA
* * * * *
101981937 TTCGATGTTTGGCAATTCACGGAATCGTGCCTTAACGTGTTGGGTTGCAATTCTGCGTTTGCTCA
1 TTCGATATTTAGCAATTCACAGAATCGTGCCCTAACGTGTTAGGTTGCAATTCTGCGTTTGCTCA
* * * *
101982002 AAATAATCGCATATCATTTCAAAATTTCACTCACGCCTTTTAAAATTCCTCAAAACGAAGACAAG
66 AAATAATCGCATATCACTTCAAAATTCCACTCACACCTTCTAAAATTCCTCAAAACGAAGACAAG
101982067 G
131 G
* *
101982068 TTCGATATTTAGCAATTCGCAGAATCGTGCCCTAACGTGTTAGGTTGCAATTTTGCGTTTGCTCA
1 TTCGATATTTAGCAATTCACAGAATCGTGCCCTAACGTGTTAGGTTGCAATTCTGCGTTTGCTCA
* * * * *
101982133 AAATATTCGGGC-T-TCCCTTCAAAATTCCATTCATATCTTCTAAAA
66 AAATAATC--GCATATCACTTCAAAATTCCACTCACACCTTCTAAAA
101982178 ATTTTTTAAA
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
131 89 0.97
132 1 0.01
133 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (131 bp):
TTCGATATTTAGCAATTCACAGAATCGTGCCCTAACGTGTTAGGTTGCAATTCTGCGTTTGCTCA
AAATAATCGCATATCACTTCAAAATTCCACTCACACCTTCTAAAATTCCTCAAAACGAAGACAAG
G
Found at i:101982223 original size:131 final size:131
Alignment explanation
Indices: 101981948--101982272 Score: 300
Period size: 131 Copynumber: 2.5 Consensus size: 131
101981938 TCGATGTTTG
* * * *
101981948 GCAATTCACGGAATCGTGCCTTAACGTGTTGGGTTGCAATTCTGCGTTTGCTCAAAATAATCGCA
1 GCAATTCGCAGAATCGTGCCCTAACGTGTTAGGTTGCAATTCTGCGTTTGCTCAAAATAATCGCA
* * * * * *
101982013 TATCATTTCAAAATTTCACTCACGCCTTTTAAAATTCCTCAAAACGAAGACAAGGTTCGATATTT
66 TATCACTTCAAAATTCCACTCACACCTTTAAAAATTCCTCAAAACGAAGACAAGATTCGACATTT
101982078 A
131 A
* *
101982079 GCAATTCGCAGAATCGTGCCCTAACGTGTTAGGTTGCAATTTTGCGTTTGCTCAAAATATTCGGG
1 GCAATTCGCAGAATCGTGCCCTAACGTGTTAGGTTGCAATTCTGCGTTTGCTCAAAATAATC--G
* * * * ** * * * *
101982144 C-T-TCCCTTCAAAATTCCATTCATATCTTCTAAAAATTTTTTAAAACGAAGGCAATATTCGGCA
64 CATATCACTTCAAAATTCCACTCACACCTT-TAAAAATTCCTCAAAACGAAGACAAGATTCGACA
101982207 TTT-
128 TTTA
* * * * *** *
101982210 GACAATTCG-AGAATCATGCCCTATCGTGCTGGGTTGTGGTTTCTG-GTTTGCTCAAAATGATCG
1 G-CAATTCGCAGAATCGTGCCCTAACGTGTTAGGTTG-CAATTCTGCGTTTGCTCAAAATAATCG
101982273 AACATTCCTT
Statistics
Matches: 157, Mismatches: 32, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
129 1 0.01
131 114 0.73
132 40 0.25
133 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (131 bp):
GCAATTCGCAGAATCGTGCCCTAACGTGTTAGGTTGCAATTCTGCGTTTGCTCAAAATAATCGCA
TATCACTTCAAAATTCCACTCACACCTTTAAAAATTCCTCAAAACGAAGACAAGATTCGACATTT
A
Found at i:101982548 original size:130 final size:129
Alignment explanation
Indices: 101982318--101982552 Score: 348
Period size: 130 Copynumber: 1.8 Consensus size: 129
101982308 AAAATTCTTA
*
101982318 AAAACGAAGACGATGTTCAATGTTTGGCGATTGAGAATCGTGCCCTATTGTGCTGGGTTGCGCTT
1 AAAACGAAGACGATGTTCAATGTTTGGCGATTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTT
* * *
101982383 TTTCATTGGTCCGAAACAATTGAAGATCCCTTCGGAATTTCCCTCACATTTTCTAAAATCTTTC
66 TTTCATTGGCCCAAAACAATCGAAGATCCCTTCGGAATTTCCCTCACATTTTCTAAAATCTTTC
* *
101982447 AAAATGAAGGCGATGTTCAATGTTTGGCGATTTGAGAATCGAT-CCCTATCGTGCTGGGTTGCGC
1 AAAACGAAGACGATGTTCAATGTTTGGCGA-TTGAGAATCG-TGCCCTATCGTGCTGGGTTGCGC
* * *
101982511 TTTTTCATTTGCCCAAAATAATCGAATATCTCC-TCGGAATTT
64 TTTTTCATTGGCCCAAAACAATCGAAGATC-CCTTCGGAATTT
101982553 TCACACGTAT
Statistics
Matches: 94, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
129 28 0.30
130 63 0.67
131 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (129 bp):
AAAACGAAGACGATGTTCAATGTTTGGCGATTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTT
TTTCATTGGCCCAAAACAATCGAAGATCCCTTCGGAATTTCCCTCACATTTTCTAAAATCTTTC
Found at i:101994391 original size:18 final size:20
Alignment explanation
Indices: 101994357--101994393 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
101994347 TTAAAATATA
101994357 AAAAATGAAAAATTATTTTT
1 AAAAATGAAAAATTATTTTT
101994377 AAAAAT-AAAAA-TATTTT
1 AAAAATGAAAAATTATTTT
101994394 CAGAAAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
AAAAATGAAAAATTATTTTT
Found at i:101994400 original size:19 final size:20
Alignment explanation
Indices: 101994357--101994400 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
101994347 TTAAAATATA
*
101994357 AAAAATGAAAAATTATTTTT
1 AAAAATGAAAAATTATTTTC
101994377 AAAAAT-AAAAA-TATTTTC
1 AAAAATGAAAAATTATTTTC
101994395 AGAAAA
1 A-AAAA
101994401 ACTTAAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 7 0.32
19 9 0.41
20 6 0.27
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (20 bp):
AAAAATGAAAAATTATTTTC
Found at i:101998725 original size:13 final size:13
Alignment explanation
Indices: 101998704--101998734 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
101998694 ATACATTCTC
*
101998704 ATTTGCAACATCA
1 ATTTTCAACATCA
101998717 ATTTTCAACATCA
1 ATTTTCAACATCA
101998730 ATTTT
1 ATTTT
101998735 ACGAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.42
Consensus pattern (13 bp):
ATTTTCAACATCA
Found at i:102001348 original size:28 final size:28
Alignment explanation
Indices: 102001289--102001348 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
102001279 ATTATCAATC
*
102001289 CCATAAGTTATAAAACTCTTCCTATACC
1 CCATAAGTTATAAAACTCTTCCTATACA
* *
102001317 CCATAAGTTATGAGACGT-TTCCTATACA
1 CCATAAGTTATAAAAC-TCTTCCTATACA
102001345 CCAT
1 CCAT
102001349 TAATATGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 27 0.96
29 1 0.04
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.32
Consensus pattern (28 bp):
CCATAAGTTATAAAACTCTTCCTATACA
Found at i:102001508 original size:14 final size:14
Alignment explanation
Indices: 102001468--102001508 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
102001458 AAAAAGACGA
102001468 TACACTCTCTCTTC
1 TACACTCTCTCTTC
102001482 TACA-T-TCTC-TC
1 TACACTCTCTCTTC
*
102001493 TACACTCTTTCTTC
1 TACACTCTCTCTTC
102001507 TA
1 TA
102001509 TCACATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 4 0.17
14 8 0.35
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (14 bp):
TACACTCTCTCTTC
Found at i:102005413 original size:28 final size:28
Alignment explanation
Indices: 102005373--102005435 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
102005363 GTCATTATCA
102005373 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
102005401 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
102005429 ACCCCAT
1 ACCCCAT
102005436 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:102005595 original size:14 final size:14
Alignment explanation
Indices: 102005555--102005595 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
102005545 AAAAAGAAGA
102005555 TACACTCTCTCTTC
1 TACACTCTCTCTTC
102005569 TACA-T-TCTC-TC
1 TACACTCTCTCTTC
*
102005580 TACACTCTTTCTTC
1 TACACTCTCTCTTC
102005594 TA
1 TA
102005596 TCATATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 4 0.17
14 8 0.35
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (14 bp):
TACACTCTCTCTTC
Found at i:102009548 original size:13 final size:11
Alignment explanation
Indices: 102009516--102009540 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
102009506 TAAAAATAAG
102009516 AAAAGGGAAGA
1 AAAAGGGAAGA
102009527 AAAAGGGAAGA
1 AAAAGGGAAGA
102009538 AAA
1 AAA
102009541 TGAGGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (11 bp):
AAAAGGGAAGA
Found at i:102013601 original size:15 final size:16
Alignment explanation
Indices: 102013574--102013603 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
102013564 TTTTCCACCG
102013574 CATTTGTTTTTAATTT
1 CATTTGTTTTTAATTT
102013590 CATTTG-TTTTAATT
1 CATTTGTTTTTAATT
102013604 ATTTGTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (16 bp):
CATTTGTTTTTAATTT
Found at i:102016142 original size:111 final size:111
Alignment explanation
Indices: 102015948--102016163 Score: 317
Period size: 111 Copynumber: 1.9 Consensus size: 111
102015938 GAGCTAGAGC
* * **
102015948 CTTTGTTCCACCCACCAGACTGGCTCCAACTAGAGGATTGGCCTCCTTGATCAGCACTGGATTGA
1 CTTTGCTCCACCCACCAGACTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTGA
* * ** *
102016013 ATCCAAGTCTTGGCTCCACCTCCACTTGTTCCACCATTCCCCCCCT
66 ATCCAACTCCTACCTCCACCTCCACTTGCTCCACCATTCCCCCCCT
*
102016059 CTTTGCTCCAGCCACCAG-CTTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTG
1 CTTTGCTCCACCCACCAGAC-TGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTG
*
102016123 ATTCCAACTCCTACCTCCACCTCCACTTGCTCCACCATTCC
65 AATCCAACTCCTACCTCCACCTCCACTTGCTCCACCATTCC
102016164 AGCCCTGGTT
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
110 1 0.01
111 92 0.99
ACGTcount: A:0.20, C:0.39, G:0.15, T:0.26
Consensus pattern (111 bp):
CTTTGCTCCACCCACCAGACTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTGA
ATCCAACTCCTACCTCCACCTCCACTTGCTCCACCATTCCCCCCCT
Found at i:102016347 original size:30 final size:30
Alignment explanation
Indices: 102016298--102016455 Score: 217
Period size: 30 Copynumber: 5.3 Consensus size: 30
102016288 ACCCCCTCTT
** * * **
102016298 CCACCTCTACCTCTATAGCCACCTCTGTCA
1 CCACCTCTACCTCCGTAGCCTCCACCATCA
102016328 CCACCTCTACCTCCGTAGCCTCCACCATCA
1 CCACCTCTACCTCCGTAGCCTCCACCATCA
*
102016358 CCGCCTCTACCTCCGTAGCCTCCACCATCA
1 CCACCTCTACCTCCGTAGCCTCCACCATCA
*
102016388 CCGCCTCTACCTCCGTAGCCTCCACCATCA
1 CCACCTCTACCTCCGTAGCCTCCACCATCA
** *
102016418 CTGCCTCTGCCTCCGTAGCCTCCACCATCA
1 CCACCTCTACCTCCGTAGCCTCCACCATCA
102016448 CCACCTCT
1 CCACCTCT
102016456 GCCACCAAAA
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 117 1.00
ACGTcount: A:0.17, C:0.52, G:0.09, T:0.22
Consensus pattern (30 bp):
CCACCTCTACCTCCGTAGCCTCCACCATCA
Found at i:102016438 original size:15 final size:15
Alignment explanation
Indices: 102016331--102016439 Score: 68
Period size: 15 Copynumber: 7.3 Consensus size: 15
102016321 TCTGTCACCA
102016331 CCTCTACCTCCGTAG
1 CCTCTACCTCCGTAG
* *
102016346 CCTCCACCATCAC--CG
1 CCTCTACC-TC-CGTAG
102016361 CCTCTACCTCCGTAG
1 CCTCTACCTCCGTAG
* *
102016376 CCTCCACCATCAC--CG
1 CCTCTACC-TC-CGTAG
102016391 CCTCTACCTCCGTAG
1 CCTCTACCTCCGTAG
*
102016406 CCTCCACCATCAC-T-G
1 CCTCTACC-TC-CGTAG
*
102016421 CCTCTGCCTCCGTAG
1 CCTCTACCTCCGTAG
102016436 CCTC
1 CCTC
102016440 CACCATCACC
Statistics
Matches: 71, Mismatches: 11, Indels: 24
0.67 0.10 0.23
Matches are distributed among these distances:
13 3 0.04
14 7 0.10
15 51 0.72
16 7 0.10
17 3 0.04
ACGTcount: A:0.15, C:0.52, G:0.11, T:0.22
Consensus pattern (15 bp):
CCTCTACCTCCGTAG
Found at i:102016470 original size:30 final size:30
Alignment explanation
Indices: 102016325--102016455 Score: 226
Period size: 30 Copynumber: 4.4 Consensus size: 30
102016315 GCCACCTCTG
*
102016325 TCACCACCTCTACCTCCGTAGCCTCCACCA
1 TCACCGCCTCTACCTCCGTAGCCTCCACCA
102016355 TCACCGCCTCTACCTCCGTAGCCTCCACCA
1 TCACCGCCTCTACCTCCGTAGCCTCCACCA
102016385 TCACCGCCTCTACCTCCGTAGCCTCCACCA
1 TCACCGCCTCTACCTCCGTAGCCTCCACCA
* *
102016415 TCACTGCCTCTGCCTCCGTAGCCTCCACCA
1 TCACCGCCTCTACCTCCGTAGCCTCCACCA
*
102016445 TCACCACCTCT
1 TCACCGCCTCT
102016456 GCCACCAAAA
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 96 1.00
ACGTcount: A:0.17, C:0.53, G:0.09, T:0.21
Consensus pattern (30 bp):
TCACCGCCTCTACCTCCGTAGCCTCCACCA
Found at i:102016470 original size:60 final size:60
Alignment explanation
Indices: 102016325--102016470 Score: 184
Period size: 60 Copynumber: 2.4 Consensus size: 60
102016315 GCCACCTCTG
* ** *
102016325 TCACCACCTCTACCTCCGTAGCCTCCACCATCACCGCCTCTACCTCCGTAGCCTCCACCA
1 TCACCACCTCTACCACCAAAACCTCCACCATCACCGCCTCTACCTCCGTAGCCTCCACCA
* * ** * * *
102016385 TCACCGCCTCTACCTCCGTAGCCTCCACCATCACTGCCTCTGCCTCCGTAGCCTCCACCA
1 TCACCACCTCTACCACCAAAACCTCCACCATCACCGCCTCTACCTCCGTAGCCTCCACCA
*
102016445 TCACCACCTCTGCCACCAAAACCTCC
1 TCACCACCTCTACCACCAAAACCTCC
102016471 TCTGTCAGAT
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
60 77 1.00
ACGTcount: A:0.18, C:0.53, G:0.09, T:0.20
Consensus pattern (60 bp):
TCACCACCTCTACCACCAAAACCTCCACCATCACCGCCTCTACCTCCGTAGCCTCCACCA
Found at i:102016874 original size:93 final size:93
Alignment explanation
Indices: 102016775--102016955 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
102016765 GTTCCAGCCA
102016775 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTGCCAGTACCCCAACTCTTCTTACCCCA
1 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTGCCAGTACCCCAACTCTTCTTACCCCA
102016840 GCTT-GAATCCTGACTTGCATCTGTCAAT
66 G-TTAGAATCCTGACTTGCATCTGTCAAT
* * * * *
102016868 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGCATCATTTCCAGTGCCCCAATTTTTCTTACCCCA
1 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTGCCAGTACCCCAACTCTTCTTACCCCA
*
102016933 GTTAGAGTCCTGACTTGCATCTG
66 GTTAGAATCCTGACTTGCATCTG
102016956 CTGATCCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
92 2 0.02
93 79 0.98
ACGTcount: A:0.20, C:0.34, G:0.15, T:0.31
Consensus pattern (93 bp):
CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTGCCAGTACCCCAACTCTTCTTACCCCA
GTTAGAATCCTGACTTGCATCTGTCAAT
Found at i:102016968 original size:93 final size:93
Alignment explanation
Indices: 102016778--102016976 Score: 285
Period size: 93 Copynumber: 2.1 Consensus size: 93
102016768 CCAGCCACCT
102016778 TTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTGCCAGTACCCCAACTCTTCTTACCCCAGCT
1 TTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTGCCAGTACCCCAACTCTTCTTACCCCAGCT
*
102016843 TGAATCCTGACTTGCATCTGTCAATCCT
66 TGAATCCTGACTTGCATCTGTCAATCCC
* * * * *
102016871 TTTTTGCCCCAACCAGAGTCTTGGCCAGCATCATTTCCAGTGCCCCAATTTTTCTTACCCCAG-T
1 TTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTGCCAGTACCCCAACTCTTCTTACCCCAGCT
* *
102016935 TAGAGTCCTGACTTGCATCTG-CTGATCCC
66 T-GAATCCTGACTTGCATCTGTC-AATCCC
*
102016964 TTTTTCCCCCAAC
1 TTTTTGCCCCAAC
102016977 TAGAATCATT
Statistics
Matches: 95, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
92 3 0.03
93 92 0.97
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.32
Consensus pattern (93 bp):
TTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTGCCAGTACCCCAACTCTTCTTACCCCAGCT
TGAATCCTGACTTGCATCTGTCAATCCC
Found at i:102026967 original size:24 final size:23
Alignment explanation
Indices: 102026940--102027015 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
102026930 GCCCGGCCCG
*
102026940 AATTATATATATATTTTTATTTTT
1 AATTATATATATA-TTTTAATTTT
*
102026964 AATTATATTTATATTTTAATTTT
1 AATTATATATATATTTTAATTTT
* * *
102026987 AATTTTA-ATATA-ATCAATTTT
1 AATTATATATATATTTTAATTTT
*
102027008 TATTATAT
1 AATTATAT
102027016 TTTTCAAATT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
21 12 0.28
22 4 0.09
23 15 0.35
24 12 0.28
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (23 bp):
AATTATATATATATTTTAATTTT
Found at i:102026972 original size:18 final size:17
Alignment explanation
Indices: 102026949--102026984 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
102026939 GAATTATATA
*
102026949 TATATTTTTATTTTTAAT
1 TATATTTATA-TTTTAAT
102026967 TATATTTATATTTTAAT
1 TATATTTATATTTTAAT
102026984 T
1 T
102026985 TTAATTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TATATTTATATTTTAAT
Found at i:102036933 original size:39 final size:39
Alignment explanation
Indices: 102036870--102036997 Score: 184
Period size: 39 Copynumber: 3.3 Consensus size: 39
102036860 GGTCTTTAAC
** * *
102036870 CCGGATATTTTTCCAGCACGTAGCCCGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * * *
102036909 CCGGATATATTTCTAGCATATAGCCTGCGTATCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
102036948 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
102036987 CCGGATATTTT
1 CCGGATATTTT
102036998 CAATCTCATA
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:102041740 original size:32 final size:32
Alignment explanation
Indices: 102041699--102041765 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
102041689 CCATGGCTTT
102041699 CTTGTCTTTCATATTCGGCTGAAAGAGATGAA
1 CTTGTCTTTCATATTCGGCTGAAAGAGATGAA
102041731 CTTGTCTTTCATATTCGGCTGAAAGAGATGAA
1 CTTGTCTTTCATATTCGGCTGAAAGAGATGAA
102041763 CTT
1 CTT
102041766 TTCATGCATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (32 bp):
CTTGTCTTTCATATTCGGCTGAAAGAGATGAA
Found at i:102042575 original size:46 final size:46
Alignment explanation
Indices: 102042523--102042751 Score: 343
Period size: 46 Copynumber: 5.0 Consensus size: 46
102042513 GCTTTTTGAA
*
102042523 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
102042569 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
102042615 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
102042661 ATGAAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
102042708 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
102042752 TCGAAGATAA
Statistics
Matches: 172, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
46 131 0.76
47 41 0.24
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:102042715 original size:93 final size:92
Alignment explanation
Indices: 102042523--102042751 Score: 343
Period size: 93 Copynumber: 2.5 Consensus size: 92
102042513 GCTTTTTGAA
* *
102042523 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT
*
102042588 GGTTGAAAGATACCATGGCAACATGAT
66 GGTTGAAAGATACCATGGCAACATGAC
* *
102042615 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAATGAGTAAGACCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCA
102042680 TGGTTGAAAGATACCATGGCAACATGAC
65 TGGTTGAAAGATACCATGGCAACATGAC
* * * * *
102042708 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
102042752 TCGAAGATAA
Statistics
Matches: 123, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
92 47 0.38
93 76 0.62
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (92 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT
GGTTGAAAGATACCATGGCAACATGAC
Found at i:102042855 original size:13 final size:13
Alignment explanation
Indices: 102042835--102042877 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
102042825 CCAGATGATG
102042835 AATGGTTATATGA
1 AATGGTTATATGA
* **
102042848 ATTGGTTATACAA
1 AATGGTTATATGA
*
102042861 AATGGTTATGTGA
1 AATGGTTATATGA
102042874 AATG
1 AATG
102042878 TTTACAAGAA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.37, C:0.02, G:0.23, T:0.37
Consensus pattern (13 bp):
AATGGTTATATGA
Found at i:102042892 original size:26 final size:26
Alignment explanation
Indices: 102042835--102042903 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 26
102042825 CCAGATGATG
*
102042835 AATGGTTATATGAATTGGTTATACAA
1 AATGGTTATATGAAATGGTTATACAA
*
102042861 AATGGTTATGTGAAAT-GTT-TACAA
1 AATGGTTATATGAAATGGTTATACAA
*
102042885 GAATTGGTCATATGGAAAT
1 -AA-TGGTTATAT-GAAAT
102042904 ATATATATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 5 0.14
25 5 0.14
26 21 0.58
27 5 0.14
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.36
Consensus pattern (26 bp):
AATGGTTATATGAAATGGTTATACAA
Found at i:102050767 original size:34 final size:35
Alignment explanation
Indices: 102050729--102050795 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
102050719 GTATCAGTCT
102050729 GGCCTTAGCCCAACTCAGTAACAG-TAAGCAGTGG
1 GGCCTTAGCCCAACTCAGTAACAGATAAGCAGTGG
* * *
102050763 GGCCTTGGCCCATCTCAGTAACAGATATGCAGT
1 GGCCTTAGCCCAACTCAGTAACAGATAAGCAGT
102050796 CACACAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 22 0.76
35 7 0.24
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (35 bp):
GGCCTTAGCCCAACTCAGTAACAGATAAGCAGTGG
Found at i:102057106 original size:34 final size:35
Alignment explanation
Indices: 102057067--102057133 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 35
102057057 GTAACTGCCT
* *
102057067 GGCCTTAGCCTAACTCAGTAACAG-TAAGCAGTGG
1 GGCCTTAGCCCAACTAAGTAACAGATAAGCAGTGG
* * *
102057101 GGCCTTGGCCCATCTAAGTAACAGATATGCAGT
1 GGCCTTAGCCCAACTAAGTAACAGATAAGCAGT
102057134 CACACAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 20 0.74
35 7 0.26
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.22
Consensus pattern (35 bp):
GGCCTTAGCCCAACTAAGTAACAGATAAGCAGTGG
Found at i:102058029 original size:18 final size:18
Alignment explanation
Indices: 102057945--102058021 Score: 57
Period size: 20 Copynumber: 3.9 Consensus size: 18
102057935 TTTTTAATTA
*
102057945 TAAAAAATATTTTAAAAAAG
1 TAAAAAA-A-TTTAAAAATG
102057965 -AATAAAAATTTATAAAAATAG
1 TAA-AAAAA-TT-TAAAAAT-G
*
102057986 TAAATAAAATTTAAAACTG
1 TAAA-AAAATTTAAAAATG
*
102058005 TCAAAAAATTTAAAAAT
1 TAAAAAAATTTAAAAAT
102058022 TAATAAAAGG
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
18 12 0.25
19 10 0.21
20 16 0.33
21 4 0.08
22 6 0.12
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.30
Consensus pattern (18 bp):
TAAAAAAATTTAAAAATG
Found at i:102058285 original size:12 final size:13
Alignment explanation
Indices: 102058260--102058284 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102058250 CAAAAATTCA
102058260 AAAAATTATTTTT
1 AAAAATTATTTTT
102058273 AAAAATTATTTT
1 AAAAATTATTTT
102058285 ATTTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AAAAATTATTTTT
Found at i:102062571 original size:64 final size:65
Alignment explanation
Indices: 102062470--102062704 Score: 366
Period size: 66 Copynumber: 3.6 Consensus size: 65
102062460 TTGATTTATG
* * *
102062470 TATTGAATTTTCATTTTTGTATGAACTTCAATTATTTACATATATTTTCATTATG-TTCTTTTTC
1 TATTGAATTTTCATTCTTGTATGAATTTCAATTATTTACATATATTTGCATTATGTTTCTTTTTC
102062534 TATTGAATTTTCATTCTTGTATGAATTTCAATTATTTACATATATTTGCATTATGTTTCTATTTT
1 TATTGAATTTTCATTCTTGTATGAATTTCAATTATTTACATATATTTGCATTATGTTTCT-TTTT
102062599 C
65 C
**
102062600 TATTGAATTTTCATTCTTGTAACAATTTCAATTATTTACATATATTTGCATTATGTTTCTATTTT
1 TATTGAATTTTCATTCTTGTATGAATTTCAATTATTTACATATATTTGCATTATGTTTC--TTTT
102062665 TC
64 TC
*
102062667 TATTGAATTTTCATTCTTGTATAAACTTT-AATTATTTA
1 TATTGAATTTTCATTCTTGTATGAA-TTTCAATTATTTA
102062705 GATAAACTTG
Statistics
Matches: 159, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
64 52 0.33
65 4 0.03
66 62 0.39
67 37 0.23
68 4 0.03
ACGTcount: A:0.27, C:0.11, G:0.06, T:0.56
Consensus pattern (65 bp):
TATTGAATTTTCATTCTTGTATGAATTTCAATTATTTACATATATTTGCATTATGTTTCTTTTTC
Found at i:102066288 original size:56 final size:56
Alignment explanation
Indices: 102066000--102066269 Score: 387
Period size: 56 Copynumber: 4.8 Consensus size: 56
102065990 TATCCCAGAA
** * * *
102066000 TGGTCTTACTCATAAACACATATCGAAATCACCTATCGATGCCAACGTATTAAACG
1 TGGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACG
* * *
102066056 TGGTCTTACTCGTACACACATATTGGAATAACATATCGATGCCAACGTATTAAACG
1 TGGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACG
* * * *
102066112 TGGTCTTACTCGCACACACATATCGGAGTCATATATTGATGCCAATGTATTAAACG
1 TGGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACG
* *
102066168 TGGTCTTACTCGCACACACATATTGGAATCACATATCGATGCCAACGTATTAAACT
1 TGGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACG
* * *
102066224 TGGTCTTACTCACACACACATATCAGAATCACATATTGATGCCAAC
1 TGGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAAC
102066270 ATCCCAGACG
Statistics
Matches: 191, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 191 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.28
Consensus pattern (56 bp):
TGGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACG
Found at i:102066302 original size:168 final size:168
Alignment explanation
Indices: 102066000--102066304 Score: 414
Period size: 168 Copynumber: 1.8 Consensus size: 168
102065990 TATCCCAGAA
* *
102066000 TGGTCTTACTCATAAACACATATCGAAATCACCTATCGATGCCAACGTATTAAACGTGGTCTTAC
1 TGGTCTTACTCACAAACACATATCGAAATCACATATCGATGCCAACGTATTAAACGTGGTCTTAC
** ** * ** *
102066065 TCGTACACACATATTGGAATAACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACA
66 TCACACACACATATCAGAATAACATATCGATGCCAACATACCAAACGTGGTCTTACACGCACACA
102066130 CATATCGGAGTCATATATTGATGCCAATGTATTAAACG
131 CATATCGGAGTCATATATTGATGCCAATGTATTAAACG
* * * * *
102066168 TGGTCTTACTCGCACACACATATTGGAATCACATATCGATGCCAACGTATTAAACTTGGTCTTAC
1 TGGTCTTACTCACAAACACATATCGAAATCACATATCGATGCCAACGTATTAAACGTGGTCTTAC
* * * * *
102066233 TCACACACACATATCAGAATCACATATTGATGCCAACATCCCAGACGTGGTCTTACACGTA-ATC
66 TCACACACACATATCAGAATAACATATCGATGCCAACATACCAAACGTGGTCTTACACGCACA-C
102066297 ACATATCG
130 ACATATCG
102066305 ATGCCAACGT
Statistics
Matches: 116, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
167 1 0.01
168 115 0.99
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (168 bp):
TGGTCTTACTCACAAACACATATCGAAATCACATATCGATGCCAACGTATTAAACGTGGTCTTAC
TCACACACACATATCAGAATAACATATCGATGCCAACATACCAAACGTGGTCTTACACGCACACA
CATATCGGAGTCATATATTGATGCCAATGTATTAAACG
Found at i:102066311 original size:43 final size:43
Alignment explanation
Indices: 102066250--102066391 Score: 232
Period size: 43 Copynumber: 3.3 Consensus size: 43
102066240 CACATATCAG
* *
102066250 AATCACATATTGATGCCAACATCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
*
102066293 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACATGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
*
102066336 AATCACATATCGATGCCAACGTCCTAGATC-TGGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAGA-CGTGGTCTTACACGT
102066379 AATCACATATCGA
1 AATCACATATCGA
102066392 AAATCCTATG
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
43 92 0.99
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
Found at i:102069512 original size:2 final size:2
Alignment explanation
Indices: 102069501--102069530 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
102069491 CAACCCCTTT
102069501 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
102069531 TAAATTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:102073315 original size:22 final size:22
Alignment explanation
Indices: 102073290--102073334 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
102073280 TTAAGTTACA
* * *
102073290 TAGCGGTAAAACCTTAAACTTG
1 TAGCAGTAAAACATCAAACTTG
102073312 TAGCAGTAAAACATCAAACTTG
1 TAGCAGTAAAACATCAAACTTG
102073334 T
1 T
102073335 GCGAGAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (22 bp):
TAGCAGTAAAACATCAAACTTG
Found at i:102081319 original size:20 final size:21
Alignment explanation
Indices: 102081294--102081345 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
102081284 CTTTCTCTTC
102081294 TCCTCTTTTCTAAA-TTTTTT
1 TCCTCTTTTCTAAATTTTTTT
102081314 TCCTCTTTTCTAAATTTTTTT
1 TCCTCTTTTCTAAATTTTTTT
*
102081335 TTCTCTTTTCT
1 TCCTCTTTTCT
102081346 CTTTAAGATT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.67
Consensus pattern (21 bp):
TCCTCTTTTCTAAATTTTTTT
Found at i:102083977 original size:17 final size:17
Alignment explanation
Indices: 102083955--102083988 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
102083945 TTGTGAAAGA
102083955 CATCATAAGTTAATTAC
1 CATCATAAGTTAATTAC
102083972 CATCATAAGTTAATTAC
1 CATCATAAGTTAATTAC
102083989 TTTGCTCACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (17 bp):
CATCATAAGTTAATTAC
Found at i:102088142 original size:21 final size:23
Alignment explanation
Indices: 102088109--102088155 Score: 71
Period size: 21 Copynumber: 2.1 Consensus size: 23
102088099 AAGAAAGGAA
102088109 AAATTGTAAAGAGAAATAGAG-G
1 AAATTGTAAAGAGAAATAGAGAG
*
102088131 AAATTG-AAAGAGAGATAGAGAG
1 AAATTGTAAAGAGAAATAGAGAG
102088153 AAA
1 AAA
102088156 ATAGAGAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.57, C:0.00, G:0.28, T:0.15
Consensus pattern (23 bp):
AAATTGTAAAGAGAAATAGAGAG
Found at i:102088152 original size:23 final size:22
Alignment explanation
Indices: 102088100--102088157 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 22
102088090 AAAGCAAAAA
102088100 AGAAAG-GA-AAAATTGTAAAG
1 AGAAAGAGAGAAAATTGTAAAG
* *
102088120 AGAAATAGAGGAAATTG-AAAG
1 AGAAAGAGAGAAAATTGTAAAG
102088141 AGAGATAGAGAGAAAAT
1 AGA-A-AGAGAGAAAAT
102088158 AGAGAGAGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
20 5 0.17
21 9 0.30
22 7 0.23
23 9 0.30
ACGTcount: A:0.59, C:0.00, G:0.28, T:0.14
Consensus pattern (22 bp):
AGAAAGAGAGAAAATTGTAAAG
Found at i:102088165 original size:23 final size:21
Alignment explanation
Indices: 102088116--102088165 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
102088106 GAAAAATTGT
*
102088116 AAAGAGAAATAGAGGAAATTG
1 AAAGAGAAATAGAGGAAATAG
*
102088137 AAAGAGAGATAGAGAGAAAATAG
1 AAAGAGAAATAGAG-G-AAATAG
*
102088160 AGAGAG
1 AAAGAG
102088166 GGGGAGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 13 0.54
22 1 0.04
23 10 0.42
ACGTcount: A:0.58, C:0.00, G:0.32, T:0.10
Consensus pattern (21 bp):
AAAGAGAAATAGAGGAAATAG
Found at i:102100449 original size:18 final size:18
Alignment explanation
Indices: 102100428--102100471 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
102100418 ACGTAATTTT
*
102100428 AAAATATAAATAAAGA-TA
1 AAAATA-AAATAAAAAGTA
102100446 AAAATAAAATAAAAAGTA
1 AAAATAAAATAAAAAGTA
102100464 AAAATAAA
1 AAAATAAA
102100472 TAATAGGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (18 bp):
AAAATAAAATAAAAAGTA
Found at i:102100472 original size:17 final size:16
Alignment explanation
Indices: 102100427--102100474 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 16
102100417 AACGTAATTT
*
102100427 TAAAATATAAATAAAGA
1 TAAAA-ATAAATAAAAA
102100444 TAAAAATAAAATAAAAA
1 TAAAAAT-AAATAAAAA
102100461 GTAAAAATAAATAA
1 -TAAAAATAAATAA
102100475 TAGGTGTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 2 0.07
17 19 0.68
18 7 0.25
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (16 bp):
TAAAAATAAATAAAAA
Found at i:102100476 original size:7 final size:6
Alignment explanation
Indices: 102100428--102100476 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
102100418 ACGTAATTTT
* *
102100428 AAAATA TAAATA AAGATA AAAAT- AAAATA AAAAGTA AAAATA AATAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA-TA AAAATA AA-AATA
102100477 GGTGTTTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
5 5 0.14
6 21 0.58
7 10 0.28
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:102117877 original size:17 final size:18
Alignment explanation
Indices: 102117855--102117896 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
102117845 AATCGCAATC
102117855 TCACTA-CATTTTCAGTT
1 TCACTACCATTTTCAGTT
102117872 TCACTACCATTTTCAGTT
1 TCACTACCATTTTCAGTT
102117890 TACACTA
1 T-CACTA
102117897 ACTAAAGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 6 0.26
18 12 0.52
19 5 0.22
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.43
Consensus pattern (18 bp):
TCACTACCATTTTCAGTT
Found at i:102126082 original size:26 final size:26
Alignment explanation
Indices: 102126053--102126160 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
102126043 TGATACAAAT
*
102126053 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
102126079 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
102126105 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102126131 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102126157 TGAT
1 TGAT
102126161 GGAAATTTTA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:102130787 original size:9 final size:9
Alignment explanation
Indices: 102130768--102130805 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
102130758 TATTTATTTC
102130768 ATAAT-ATA
1 ATAATGATA
102130776 ATAATGATA
1 ATAATGATA
102130785 ATAATGATA
1 ATAATGATA
102130794 ATAATGATA
1 ATAATGATA
102130803 ATA
1 ATA
102130806 TTATTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.17
9 24 0.83
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (9 bp):
ATAATGATA
Found at i:102130810 original size:3 final size:3
Alignment explanation
Indices: 102130804--102130893 Score: 135
Period size: 3 Copynumber: 30.0 Consensus size: 3
102130794 ATAATGATAA
* * * * *
102130804 TAT TAT TAT TAT TAT CAT TAT TAT CAT TAT TAT CAT TTT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102130852 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102130894 CTTTTTACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:102131058 original size:8 final size:8
Alignment explanation
Indices: 102131045--102131080 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
102131035 TTATAATTTA
102131045 AATAATAT
1 AATAATAT
102131053 AATAATAT
1 AATAATAT
102131061 AATAATAT
1 AATAATAT
102131069 AATAAT-T
1 AATAATAT
102131076 AATAA
1 AATAA
102131081 ATTAAGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AATAATAT
Found at i:102131902 original size:18 final size:18
Alignment explanation
Indices: 102131869--102131903 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102131859 TTTTTTATAT
**
102131869 TTTTATTATTTTAATTAA
1 TTTTATTATTCAAATTAA
102131887 TTTTATTATTCAAATTA
1 TTTTATTATTCAAATTA
102131904 TGCCATTTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTATTATTCAAATTAA
Found at i:102141742 original size:17 final size:17
Alignment explanation
Indices: 102141716--102141753 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
102141706 TGGGCAATAA
102141716 AAGAAGAAGAGAAAAAG
1 AAGAAGAAGAGAAAAAG
* *
102141733 AAGAATAAGAGAAGAAG
1 AAGAAGAAGAGAAAAAG
102141750 AAGA
1 AAGA
102141754 GGAGGAGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (17 bp):
AAGAAGAAGAGAAAAAG
Found at i:102144298 original size:20 final size:21
Alignment explanation
Indices: 102144264--102144308 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
102144254 ATTTTATAAT
102144264 ACATAAATTAAATAA-AAATA
1 ACATAAATTAAATAATAAATA
** *
102144284 ACATAAATTTTATAATATATA
1 ACATAAATTAAATAATAAATA
102144305 ACAT
1 ACAT
102144309 TTATAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (21 bp):
ACATAAATTAAATAATAAATA
Found at i:102145102 original size:3 final size:3
Alignment explanation
Indices: 102145094--102145130 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
102145084 TCAAAACCTC
102145094 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
102145131 ATTAAGGGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:102151703 original size:14 final size:14
Alignment explanation
Indices: 102151684--102151719 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
102151674 AAAGACGTAT
102151684 GAAAATTTCAATAA
1 GAAAATTTCAATAA
*
102151698 GAAAATTTCGATAA
1 GAAAATTTCAATAA
102151712 GAAAATTT
1 GAAAATTT
102151720 TACCGATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.53, C:0.06, G:0.11, T:0.31
Consensus pattern (14 bp):
GAAAATTTCAATAA
Found at i:102153011 original size:25 final size:24
Alignment explanation
Indices: 102152981--102153028 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
102152971 AGCACAACTC
102152981 TTATGAGCGTCCTAATATAGGCTCT
1 TTATGAGCGTCCTAATAT-GGCTCT
* *
102153006 TTATGAGCTTCCTGATATGGCTC
1 TTATGAGCGTCCTAATATGGCTC
102153029 ACTTCAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (24 bp):
TTATGAGCGTCCTAATATGGCTCT
Found at i:102161823 original size:21 final size:24
Alignment explanation
Indices: 102161791--102161834 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
102161781 GTTGATTCTT
102161791 TTATAGAATTTA-T-ATTTTTTTA
1 TTATAGAATTTAGTGATTTTTTTA
102161813 TTATA-AATTTAGTGATTTTTTT
1 TTATAGAATTTAGTGATTTTTTT
102161835 TAAATTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
22 6 0.30
23 8 0.40
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.64
Consensus pattern (24 bp):
TTATAGAATTTAGTGATTTTTTTA
Found at i:102162641 original size:14 final size:14
Alignment explanation
Indices: 102162622--102162648 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
102162612 TTTCATCAAA
102162622 TTAATCTTAAAATC
1 TTAATCTTAAAATC
102162636 TTAATCTTAAAAT
1 TTAATCTTAAAAT
102162649 AACTAACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAATCTTAAAATC
Found at i:102174637 original size:34 final size:33
Alignment explanation
Indices: 102174589--102174660 Score: 108
Period size: 34 Copynumber: 2.2 Consensus size: 33
102174579 ATGCCCCTTC
*
102174589 TTTTTTTTTTAAATTTTATCTCCCTTCTACAAA
1 TTTTTTTTTCAAATTTTATCTCCCTTCTACAAA
*
102174622 TTTTTTATTTCAAATTTTATTTCCCTTCTACAAA
1 TTTTTT-TTTCAAATTTTATCTCCCTTCTACAAA
*
102174656 ATTTT
1 TTTTT
102174661 ACCTTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 6 0.17
34 29 0.83
ACGTcount: A:0.25, C:0.17, G:0.00, T:0.58
Consensus pattern (33 bp):
TTTTTTTTTCAAATTTTATCTCCCTTCTACAAA
Found at i:102177065 original size:7 final size:8
Alignment explanation
Indices: 102177043--102177071 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
102177033 TTTGAGTTGT
102177043 AGTGGGGG
1 AGTGGGGG
102177051 AGTGGGGG
1 AGTGGGGG
102177059 AGTGGGGG
1 AGTGGGGG
102177067 AGTGG
1 AGTGG
102177072 ATTGAGAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.72, T:0.14
Consensus pattern (8 bp):
AGTGGGGG
Found at i:102179579 original size:15 final size:15
Alignment explanation
Indices: 102179559--102179615 Score: 82
Period size: 15 Copynumber: 3.8 Consensus size: 15
102179549 AAATAATAGT
102179559 ATAAATTAATAAAT-A
1 ATAAA-TAATAAATAA
102179574 ATAAATAA-AAATAA
1 ATAAATAATAAATAA
102179588 CATAAATAATAAATAA
1 -ATAAATAATAAATAA
102179604 ATAAATAATAAA
1 ATAAATAATAAA
102179616 ATTAACAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
13 4 0.10
14 4 0.10
15 25 0.64
16 6 0.15
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAATAATAAATAA
Found at i:102179580 original size:4 final size:4
Alignment explanation
Indices: 102179559--102179615 Score: 61
Period size: 4 Copynumber: 15.2 Consensus size: 4
102179549 AAATAATAGT
*
102179559 ATAA ATTA ATAA AT-A ATAA AT-A A-AA ATAA CATAA AT-A ATAA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA -ATAA ATAA ATAA ATAA
102179604 ATAA AT-A ATAA A
1 ATAA ATAA ATAA A
102179616 ATTAACAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
3 13 0.29
4 28 0.62
5 4 0.09
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:102179637 original size:34 final size:32
Alignment explanation
Indices: 102179565--102179652 Score: 92
Period size: 34 Copynumber: 2.7 Consensus size: 32
102179555 TAGTATAAAT
*
102179565 TAATAAAT-AATAAATAAAAATAACATAAATAA
1 TAATAAATAAAT-AATAAAATTAACATAAATAA
102179597 TAAATAAATAAATAATAAAATTAACAATACGAA-AA
1 T-AATAAATAAATAATAAAATTAAC-ATA--AATAA
102179632 TAAT-AATAAAATAATAAAATT
1 TAATAAAT-AAATAATAAAATT
102179653 CAAAGTCAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
32 1 0.02
33 21 0.43
34 22 0.45
35 3 0.06
36 2 0.04
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.26
Consensus pattern (32 bp):
TAATAAATAAATAATAAAATTAACATAAATAA
Found at i:102179642 original size:11 final size:11
Alignment explanation
Indices: 102179565--102179648 Score: 50
Period size: 11 Copynumber: 7.3 Consensus size: 11
102179555 TAGTATAAAT
102179565 TAAT-AAATAA
1 TAATAAAATAA
102179575 TAA-ATAAA-AA
1 TAATA-AAATAA
*
102179585 TAACATAAATAA
1 TAATA-AAATAA
102179597 TAA-ATAAATAAA
1 TAATA-AAAT-AA
102179609 TAATAAAATTAA
1 TAATAAAA-TAA
*
102179621 CAATACGAAAATAA
1 TAAT---AAAATAA
102179635 TAATAAAATAA
1 TAATAAAATAA
102179646 TAA
1 TAA
102179649 AATTCAAAGT
Statistics
Matches: 62, Mismatches: 2, Indels: 19
0.75 0.02 0.23
Matches are distributed among these distances:
10 8 0.13
11 24 0.39
12 18 0.29
13 2 0.03
14 6 0.10
15 4 0.06
ACGTcount: A:0.70, C:0.04, G:0.01, T:0.25
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:102179927 original size:29 final size:29
Alignment explanation
Indices: 102179894--102179949 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
102179884 ACAAGAATGC
*
102179894 TTGATTTTATTGATTATGATTAGGTTTAG
1 TTGATTTTATTGATTAAGATTAGGTTTAG
* *
102179923 TTGATTTTATTGCTTAAGTTTAGGTTT
1 TTGATTTTATTGATTAAGATTAGGTTT
102179950 TTAGATGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.02, G:0.20, T:0.57
Consensus pattern (29 bp):
TTGATTTTATTGATTAAGATTAGGTTTAG
Found at i:102190187 original size:21 final size:20
Alignment explanation
Indices: 102190130--102190191 Score: 81
Period size: 19 Copynumber: 3.0 Consensus size: 20
102190120 AATTATAAAT
102190130 TATTGATATTATTTAAATAATA
1 TATT-ATATT-TTTAAATAATA
*
102190152 TATTA-AATTTTAAATAATA
1 TATTATATTTTTAAATAATA
102190171 TATTATATTTTTAAAATAATA
1 TATTATATTTTT-AAATAATA
102190192 AAAATGAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
19 16 0.44
20 7 0.19
21 9 0.25
22 4 0.11
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TATTATATTTTTAAATAATA
Found at i:102191800 original size:22 final size:23
Alignment explanation
Indices: 102191775--102191818 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
102191765 AATCATTGTT
102191775 AAAA-AATATATGAATT-TAAATA
1 AAAATAAT-TATGAATTGTAAATA
*
102191797 AAAATAATTGTGAATTGTAAAT
1 AAAATAATTATGAATTGTAAAT
102191819 CTTGAAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (23 bp):
AAAATAATTATGAATTGTAAATA
Found at i:102193856 original size:21 final size:21
Alignment explanation
Indices: 102193801--102193909 Score: 101
Period size: 21 Copynumber: 5.2 Consensus size: 21
102193791 ATGCTTTGCT
* *
102193801 TTCTGTTTAGCTCTCACGAGC
1 TTCTGTTTAACTCTTACGAGC
* * * * *
102193822 TTTTATTCAGCTCTCACGAGC
1 TTCTGTTTAACTCTTACGAGC
* * * *
102193843 CTCTGGTTAACTCTTATGAGT
1 TTCTGTTTAACTCTTACGAGC
*
102193864 TTCTGTTTAGCTCTTACGAGC
1 TTCTGTTTAACTCTTACGAGC
*
102193885 TTCTGTTTAACTCTTATGAGC
1 TTCTGTTTAACTCTTACGAGC
102193906 TTCT
1 TTCT
102193910 CTTACGATAT
Statistics
Matches: 69, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 69 1.00
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.43
Consensus pattern (21 bp):
TTCTGTTTAACTCTTACGAGC
Found at i:102193877 original size:42 final size:42
Alignment explanation
Indices: 102193830--102193909 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
102193820 GCTTTTATTC
*
102193830 AGCTCTCACGAGCCTCTGGTTAACTCTTATGAGTTTCTGTTT
1 AGCTCTCACGAGCCTCTGGTTAACTCTTATGAGCTTCTGTTT
* * *
102193872 AGCTCTTACGAGCTTCTGTTTAACTCTTATGAGCTTCT
1 AGCTCTCACGAGCCTCTGGTTAACTCTTATGAGCTTCT
102193910 CTTACGATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.41
Consensus pattern (42 bp):
AGCTCTCACGAGCCTCTGGTTAACTCTTATGAGCTTCTGTTT
Found at i:102197704 original size:21 final size:21
Alignment explanation
Indices: 102197678--102197718 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
102197668 TTACTTTTTG
102197678 TTCAGCTCTCACGAGCTTCTA
1 TTCAGCTCTCACGAGCTTCTA
*
102197699 TTCAGCTCTTACGAGCTTCT
1 TTCAGCTCTCACGAGCTTCT
102197719 GTTTAACTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.32, G:0.15, T:0.37
Consensus pattern (21 bp):
TTCAGCTCTCACGAGCTTCTA
Found at i:102197728 original size:21 final size:21
Alignment explanation
Indices: 102197676--102197740 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
102197666 CTTTACTTTT
* *
102197676 TGTTCAGCTCTCACGAGCTTC
1 TGTTCAACTCTTACGAGCTTC
* *
102197697 TATTCAGCTCTTACGAGCTTC
1 TGTTCAACTCTTACGAGCTTC
* * *
102197718 TGTTTAACTCTTATGAGTTTC
1 TGTTCAACTCTTACGAGCTTC
102197739 TG
1 TG
102197741 CTCAGCAGAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.42
Consensus pattern (21 bp):
TGTTCAACTCTTACGAGCTTC
Found at i:102203553 original size:22 final size:23
Alignment explanation
Indices: 102203525--102203586 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
102203515 GTTAACAATT
* *
102203525 AAATAAATATTTTAAAATC-TAA
1 AAATAAAAATATTAAAATCTTAA
* *
102203547 AAATAAAAATATTATATTCTTAA
1 AAATAAAAATATTAAAATCTTAA
*
102203570 AAATAAAAATATAAAAA
1 AAATAAAAATATTAAAA
102203587 CTAAAATTTA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 15 0.47
23 17 0.53
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATAAAAATATTAAAATCTTAA
Found at i:102206315 original size:18 final size:18
Alignment explanation
Indices: 102206294--102206355 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
102206284 CTGTGTCTGC
**
102206294 ATCTGTATCTACATTTGA
1 ATCTGTATCTGTATTTGA
*
102206312 ATCT-TCATCTGTATCTGA
1 ATCTGT-ATCTGTATTTGA
*
102206330 AACTGTATCTGTATTTGA
1 ATCTGTATCTGTATTTGA
102206348 ATCTGTAT
1 ATCTGTAT
102206356 ATTATATGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 1 0.03
18 34 0.94
19 1 0.03
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (18 bp):
ATCTGTATCTGTATTTGA
Found at i:102206336 original size:36 final size:36
Alignment explanation
Indices: 102206281--102206351 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
102206271 TCTATTTCTG
* * *
102206281 CATCTGTGTCTGCATCTGTATCTACATTTGAATCTT
1 CATCTGTATCTGAAACTGTATCTACATTTGAATCTT
**
102206317 CATCTGTATCTGAAACTGTATCTGTATTTGAATCT
1 CATCTGTATCTGAAACTGTATCTACATTTGAATCT
102206352 GTATATTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.44
Consensus pattern (36 bp):
CATCTGTATCTGAAACTGTATCTACATTTGAATCTT
Found at i:102208093 original size:23 final size:23
Alignment explanation
Indices: 102208045--102208095 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
102208035 AAGTTTATTA
* * *
102208045 GAAAAATTGTCTGGTTTGAGAGT
1 GAAATATTGTCTGATTTGAGACT
102208068 GAAATATTGTCTAGATTTGA-ACT
1 GAAATATTGTCT-GATTTGAGACT
102208091 GAAAT
1 GAAAT
102208096 TAGAGTTACG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (23 bp):
GAAATATTGTCTGATTTGAGACT
Found at i:102209256 original size:29 final size:29
Alignment explanation
Indices: 102209232--102209346 Score: 167
Period size: 29 Copynumber: 4.0 Consensus size: 29
102209222 GTGTCACGCG
* **
102209232 GCCGTGTGGTAGCCCGTGTGGGTCATATG
1 GCCGTGTGGTAGCCCGTGTGGGTCACACA
*
102209261 GCGGTGTGGTAGCCCGTGTGGGTCACACA
1 GCCGTGTGGTAGCCCGTGTGGGTCACACA
102209290 GCCGTGTGGTAGCCCGTGTGGGTCACACA
1 GCCGTGTGGTAGCCCGTGTGGGTCACACA
* **
102209319 GCCGTGTGGTAGACTATGTGGGTCACAC
1 GCCGTGTGGTAGCCCGTGTGGGTCACAC
102209347 GACCATGTAG
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 78 1.00
ACGTcount: A:0.14, C:0.23, G:0.39, T:0.23
Consensus pattern (29 bp):
GCCGTGTGGTAGCCCGTGTGGGTCACACA
Found at i:102209296 original size:17 final size:17
Alignment explanation
Indices: 102209274--102209327 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 17
102209264 GTGTGGTAGC
102209274 CCGTGTGGGTCACACAG
1 CCGTGTGGGTCACACAG
*
102209291 CCGTGT-GGT-A-GC--
1 CCGTGTGGGTCACACAG
102209303 CCGTGTGGGTCACACAG
1 CCGTGTGGGTCACACAG
102209320 CCGTGTGG
1 CCGTGTGG
102209328 TAGACTATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
12 6 0.20
13 3 0.10
14 2 0.07
15 2 0.07
16 3 0.10
17 14 0.47
ACGTcount: A:0.13, C:0.28, G:0.39, T:0.20
Consensus pattern (17 bp):
CCGTGTGGGTCACACAG
Found at i:102215956 original size:23 final size:22
Alignment explanation
Indices: 102215904--102215957 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
102215894 TCCACGTCTT
*
102215904 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
102215926 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
102215949 TTTCTTTTC
1 TTTCTTTTC
102215958 ACTCTCAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
21 3 0.11
22 5 0.19
23 13 0.48
24 6 0.22
ACGTcount: A:0.09, C:0.20, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:102219424 original size:16 final size:16
Alignment explanation
Indices: 102219405--102219435 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102219395 CCTAAACTAA
*
102219405 TAAAGTAATAAATTAT
1 TAAACTAATAAATTAT
102219421 TAAACTAATAAATTA
1 TAAACTAATAAATTA
102219436 ATACATAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (16 bp):
TAAACTAATAAATTAT
Found at i:102221255 original size:18 final size:20
Alignment explanation
Indices: 102221232--102221278 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
102221222 TCAATAGTGA
102221232 AAAAAAAATA-CTGAAAAC-
1 AAAAAAAATAGCTGAAAACG
*
102221250 AAAAAAAA-AGTTGAAAACG
1 AAAAAAAATAGCTGAAAACG
102221269 AAAAAAAATA
1 AAAAAAAATA
102221279 AAAAAAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 1 0.04
18 15 0.60
19 8 0.32
20 1 0.04
ACGTcount: A:0.74, C:0.06, G:0.09, T:0.11
Consensus pattern (20 bp):
AAAAAAAATAGCTGAAAACG
Found at i:102221621 original size:26 final size:27
Alignment explanation
Indices: 102221592--102221650 Score: 93
Period size: 26 Copynumber: 2.2 Consensus size: 27
102221582 TATTTGTTAG
102221592 TTATTAATATTGTTAGT-AAAAAACCC
1 TTATTAATATTGTTAGTAAAAAAACCC
*
102221618 TTATTATTATTGTTAGTAAAAAAACCC
1 TTATTAATATTGTTAGTAAAAAAACCC
*
102221645 TAATTA
1 TTATTA
102221651 TTGTTAGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 16 0.53
27 14 0.47
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (27 bp):
TTATTAATATTGTTAGTAAAAAAACCC
Found at i:102221650 original size:27 final size:26
Alignment explanation
Indices: 102221594--102221652 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 26
102221584 TTTGTTAGTT
* *
102221594 ATTAATATTGTTAGTAAAAAACCCTT
1 ATTATTATTGTTAGTAAAAAACCCTA
102221620 ATTATTATTGTTAGTAAAAAAACCCTA
1 ATTATTATTGTTAGT-AAAAAACCCTA
102221647 ATTATT
1 ATTATT
102221653 GTTAGTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (26 bp):
ATTATTATTGTTAGTAAAAAACCCTA
Done.