Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 318 of 343
Found at i:102846482 original size:21 final size:21
Alignment explanation
Indices: 102846399--102846552 Score: 101
Period size: 21 Copynumber: 7.1 Consensus size: 21
102846389 ATTTTACCAC
* **
102846399 TATTATTATTACTATCATTAT
1 TATTATTATTATTATTTTTAT
*** * *
102846420 TATTGCCATTATTATTATTAC
1 TATTATTATTATTATTTTTAT
* **
102846441 TATTACTGGTATTATTTTTTAT
1 TATTATTATTATTA-TTTTTAT
* *
102846463 TATCATTGTTATTATTTTTAT
1 TATTATTATTATTATTTTTAT
* **
102846484 TTTTATTGCTATTATTTTTAT
1 TATTATTATTATTATTTTTAT
*
102846505 TATTAATATTATTATTGTTATATT
1 TATTATTATTATTATT-TT-TA-T
* *
102846529 TAGTATTATTTTTATTTTTAT
1 TATTATTATTATTATTTTTAT
102846550 TAT
1 TAT
102846553 AACTACTACT
Statistics
Matches: 103, Mismatches: 26, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
21 65 0.63
22 20 0.19
23 4 0.04
24 14 0.14
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.64
Consensus pattern (21 bp):
TATTATTATTATTATTTTTAT
Found at i:102846507 original size:30 final size:30
Alignment explanation
Indices: 102846471--102846550 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
102846461 ATTATCATTG
102846471 TTATTATTTTTATTTTTATTGCTATTATTT-
1 TTATTATTTTTATTTTTATTGCTA-TATTTA
** * *
102846501 TTATTATTAATATTATTATTGTTATATTTA
1 TTATTATTTTTATTTTTATTGCTATATTTA
*
102846531 GTATTATTTTTATTTTTATT
1 TTATTATTTTTATTTTTATT
102846551 ATAACTACTA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 5 0.12
30 36 0.88
ACGTcount: A:0.25, C:0.01, G:0.04, T:0.70
Consensus pattern (30 bp):
TTATTATTTTTATTTTTATTGCTATATTTA
Found at i:102846550 original size:15 final size:15
Alignment explanation
Indices: 102846471--102846552 Score: 67
Period size: 15 Copynumber: 5.5 Consensus size: 15
102846461 ATTATCATTG
102846471 TTATTATTTTTATTT
1 TTATTATTTTTATTT
** *
102846486 TTATTGCTATTATTT
1 TTATTATTTTTATTT
** *
102846501 TTATTATTAATATTA
1 TTATTATTTTTATTT
* *
102846516 TTATT-GTTATATTT
1 TTATTATTTTTATTT
*
102846530 AGTATTATTTTTATTT
1 -TTATTATTTTTATTT
102846546 TTATTAT
1 TTATTAT
102846553 AACTACTACT
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
14 6 0.12
15 38 0.75
16 7 0.14
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.70
Consensus pattern (15 bp):
TTATTATTTTTATTT
Found at i:102846793 original size:18 final size:18
Alignment explanation
Indices: 102846772--102846815 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 18
102846762 TACTTATTTG
102846772 TATTATTTTTATTATCAT
1 TATTATTTTTATTATCAT
102846790 TATT-TTATTTATTATCAT
1 TATTATT-TTTATTATCAT
102846808 TATTATTT
1 TATTATTT
102846816 AAAAAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.08
18 20 0.83
19 2 0.08
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTTTTATTATCAT
Found at i:102847263 original size:26 final size:26
Alignment explanation
Indices: 102847234--102847393 Score: 239
Period size: 26 Copynumber: 6.2 Consensus size: 26
102847224 TGGTACAAAT
*
102847234 TGATAGTGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* **
102847260 TGATAATGGATTAGGTAAATACTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102847286 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
102847312 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
102847338 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
102847364 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102847390 TGAT
1 TGAT
102847394 GGGCATTTCA
Statistics
Matches: 118, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 118 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:102847297 original size:52 final size:52
Alignment explanation
Indices: 102847234--102847393 Score: 266
Period size: 52 Copynumber: 3.1 Consensus size: 52
102847224 TGGTACAAAT
* *
102847234 TGATAGTGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATACTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
102847286 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* * * *
102847338 TGATAATAGGTTAGGTAAATGTTCAATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
102847390 TGAT
1 TGAT
102847394 GGGCATTTCA
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 102 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.35
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:102848928 original size:26 final size:26
Alignment explanation
Indices: 102848878--102848928 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
102848868 ACAGTTTTAC
102848878 CCCCTAGGAGATAAATTACCGAAATA
1 CCCCTAGGAGATAAATTACCGAAATA
* *
102848904 CCCCTAGG-GTTAAATTGACCTAAAT
1 CCCCTAGGAGATAAATT-ACCGAAAT
102848929 GCATGTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCCTAGGAGATAAATTACCGAAATA
Found at i:102858116 original size:25 final size:26
Alignment explanation
Indices: 102858087--102858137 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
102858077 TTAAATATTT
102858087 AACCACAAA-TTAT-TAGATATTAGAA
1 AACCACAAATTTATATAGATA-TAGAA
*
102858112 AACCATAAATTTATATAGATATAGAA
1 AACCACAAATTTATATAGATATAGAA
102858138 TTTTATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 8 0.35
26 9 0.39
27 6 0.26
ACGTcount: A:0.53, C:0.10, G:0.08, T:0.29
Consensus pattern (26 bp):
AACCACAAATTTATATAGATATAGAA
Found at i:102858519 original size:28 final size:29
Alignment explanation
Indices: 102858488--102858542 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
102858478 CGAAATTGGA
* *
102858488 TTAAATTATTTTAATTTTAAAA-ATAATT
1 TTAAATTAATTTAATTGTAAAAGATAATT
*
102858516 TTAATTTAATTTAATTGTAAAAGATAA
1 TTAAATTAATTTAATTGTAAAAGATAA
102858543 AATAATGTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 19 0.83
29 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (29 bp):
TTAAATTAATTTAATTGTAAAAGATAATT
Found at i:102860291 original size:20 final size:21
Alignment explanation
Indices: 102860253--102860311 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 21
102860243 ATGTAAGAAA
* * *
102860253 ATAAAAATATATAAAATTATC
1 ATAAACATAAATAATATTATC
102860274 A-AAACATAAATAATATTATC
1 ATAAACATAAATAATATTATC
* *
102860294 ATAAATATAAATATTATT
1 ATAAACATAAATAATATT
102860312 TAATTATCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 17 0.53
21 15 0.47
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (21 bp):
ATAAACATAAATAATATTATC
Found at i:102860308 original size:18 final size:19
Alignment explanation
Indices: 102860256--102860310 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
102860246 TAAGAAAATA
*
102860256 AAAATATATAAA-ATTATC
1 AAAACATATAAATATTATC
*
102860274 AAAACATAAATAATATTATC
1 AAAACATATA-AATATTATC
*
102860294 ATAA-ATATAAATATTAT
1 AAAACATATAAATATTAT
102860311 TTAATTATCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
18 16 0.52
19 6 0.19
20 9 0.29
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAACATATAAATATTATC
Found at i:102860322 original size:26 final size:26
Alignment explanation
Indices: 102860288--102860339 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
102860278 CATAAATAAT
*
102860288 ATTATCATAAATATAAATATTATTTA
1 ATTATCATAAAGATAAATATTATTTA
102860314 ATTATCATAAAGATAAATATTATTTA
1 ATTATCATAAAGATAAATATTATTTA
102860340 TCTTAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (26 bp):
ATTATCATAAAGATAAATATTATTTA
Found at i:102865090 original size:15 final size:15
Alignment explanation
Indices: 102865072--102865106 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
102865062 AATTTTTTAT
102865072 TTATTATCA-TCATTA
1 TTATTATCACT-ATTA
102865087 TTATTATCACTATTA
1 TTATTATCACTATTA
102865102 TTATT
1 TTATT
102865107 TTATTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 18 0.95
16 1 0.05
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATTATCACTATTA
Found at i:102866488 original size:13 final size:13
Alignment explanation
Indices: 102866455--102866492 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
102866445 AGTTCTTCAT
* *
102866455 TGCTTTTCAAAAG
1 TGCTTTTGAGAAG
102866468 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
102866481 TGCTTTTGAGAA
1 TGCTTTTGAGAA
102866493 ATTTGAGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.26, C:0.11, G:0.24, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:102866763 original size:19 final size:20
Alignment explanation
Indices: 102866719--102866768 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
102866709 ATTAATTATT
*
102866719 TATAAAATTTAATTAGAATA
1 TATAAAATATAATTAGAATA
*
102866739 TATAAAATATATTTA-AATA
1 TATAAAATATAATTAGAATA
*
102866758 T-TTAAATATAA
1 TATAAAATATAA
102866769 AAATTAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 8 0.31
19 5 0.19
20 13 0.50
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
TATAAAATATAATTAGAATA
Found at i:102876582 original size:25 final size:25
Alignment explanation
Indices: 102876553--102876600 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
102876543 TTATAATATG
* *
102876553 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
102876578 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
102876601 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:102876651 original size:9 final size:9
Alignment explanation
Indices: 102876639--102876695 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
102876629 TTTGATAAAC
102876639 ATGATATGT
1 ATGATATGT
*
102876648 ATGATATGCAC
1 ATGATATG--T
*
102876659 ATGACATGT
1 ATGATATGT
*
102876668 ATGATATGCAC
1 ATGATATG--T
102876679 ATGATATGT
1 ATGATATGT
102876688 ATGATATG
1 ATGATATG
102876696 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:102876662 original size:20 final size:20
Alignment explanation
Indices: 102876637--102876699 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
102876627 ATTTTGATAA
102876637 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
102876657 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
102876677 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
102876697 ACA
1 ACA
102876700 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:102876780 original size:24 final size:24
Alignment explanation
Indices: 102876753--102876894 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
102876743 GAGGAAGTGC
102876753 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
102876777 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
102876801 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
102876824 AAAAGAGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
102876848 -AAAGGGCTTATGCCCCAGCTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
102876871 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
102876895 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 44 0.40
24 55 0.50
25 10 0.09
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:102876808 original size:23 final size:23
Alignment explanation
Indices: 102876754--102876873 Score: 204
Period size: 23 Copynumber: 5.1 Consensus size: 23
102876744 AGGAAGTGCA
102876754 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
102876777 AAAAGGGCTTATGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
102876801 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
102876824 AAAAGAGCTTATGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
102876848 AAAGGGCTTATGCCCCAGCTATT
1 AAAGGGCTTATGCCCCAGTTATT
102876871 AAA
1 AAA
102876874 AGAGGCTAGG
Statistics
Matches: 92, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 47 0.51
24 45 0.49
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:102876823 original size:47 final size:47
Alignment explanation
Indices: 102876754--102876894 Score: 230
Period size: 47 Copynumber: 3.0 Consensus size: 47
102876744 AGGAAGTGCA
102876754 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
102876801 AAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
* *
102876848 AAAGGGCTTATGCCCCAGCTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTAT
102876895 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
47 78 0.89
48 10 0.11
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:102877122 original size:31 final size:31
Alignment explanation
Indices: 102877087--102877150 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
102877077 CGTTTACAGT
102877087 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
102877118 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102877149 AA
1 AA
102877151 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:102881289 original size:23 final size:21
Alignment explanation
Indices: 102881237--102881332 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
102881227 CATGATCAGT
** * *
102881237 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
*
102881258 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
102881279 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
102881300 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
102881321 AAATACGACACA
1 --ATACGACACA
102881333 TAAAGTGCCT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 57 0.85
23 10 0.15
ACGTcount: A:0.36, C:0.27, G:0.23, T:0.14
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:102881297 original size:42 final size:43
Alignment explanation
Indices: 102881237--102881342 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 43
102881227 CATGATCAGT
*
102881237 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTG-
1 ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTGA
* * * *
102881279 ATACGACACACGAGGTGCCTGATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTG-A
*
102881323 ATACGACACATAAAGTGCCT
1 ATACGACACACAAAGTGCCT
102881343 GATCAGTAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
42 37 0.69
44 17 0.31
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.15
Consensus pattern (43 bp):
ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTGA
Found at i:102882819 original size:16 final size:17
Alignment explanation
Indices: 102882784--102882819 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
102882774 CCTAATTCTC
102882784 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
102882800 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
102882815 CCTTC
1 CCTTC
102882820 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:102888512 original size:21 final size:22
Alignment explanation
Indices: 102888469--102888516 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
102888459 TTATCAAAAG
* *
102888469 TTTAGGAAATCTTTTAGAAATT
1 TTTAAGAAATCTTTCAGAAATT
102888491 TTTAAGAAATCTTTCA-AAATT
1 TTTAAGAAATCTTTCAGAAATT
102888512 TTTAA
1 TTTAA
102888517 TCTCTAACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (22 bp):
TTTAAGAAATCTTTCAGAAATT
Found at i:102891815 original size:28 final size:28
Alignment explanation
Indices: 102891784--102891845 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
102891774 TTAAATTTTT
* *
102891784 TAAAAGAATTAAAAATTATAAAAAAATA
1 TAAAAAAATCAAAAATTATAAAAAAATA
* * *
102891812 TAAAAAAATCAGAAATTTTATAAAAATA
1 TAAAAAAATCAAAAATTATAAAAAAATA
102891840 TAAAAA
1 TAAAAA
102891846 TGATAAAAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.26
Consensus pattern (28 bp):
TAAAAAAATCAAAAATTATAAAAAAATA
Found at i:102897349 original size:54 final size:54
Alignment explanation
Indices: 102897290--102897398 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
102897280 CTCATACCAC
102897290 AGTCCATACTTAAATAAAATTTACAGTCCCAAATAAAATAATTCCAAAACAATT
1 AGTCCATACTTAAATAAAATTTACAGTCCCAAATAAAATAATTCCAAAACAATT
102897344 AGTCCATACTTAAATAAAATTTACAGTCCCAAATAAAATAATTCCAAAACAATT
1 AGTCCATACTTAAATAAAATTTACAGTCCCAAATAAAATAATTCCAAAACAATT
102897398 A
1 A
102897399 AAGTAATTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.50, C:0.18, G:0.04, T:0.28
Consensus pattern (54 bp):
AGTCCATACTTAAATAAAATTTACAGTCCCAAATAAAATAATTCCAAAACAATT
Found at i:102899668 original size:13 final size:13
Alignment explanation
Indices: 102899646--102899678 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
102899636 AAGGGTTTGT
102899646 TTAT-TAAACTAA
1 TTATCTAAACTAA
102899658 TTATCTAAACTAA
1 TTATCTAAACTAA
*
102899671 TTAACTAA
1 TTATCTAA
102899679 TTTAATTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:102902619 original size:14 final size:14
Alignment explanation
Indices: 102902602--102902634 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
102902592 TTGAAATGAA
102902602 AAAAAAATAAGAAT
1 AAAAAAATAAGAAT
102902616 AAAAAAATAAGAAT
1 AAAAAAATAAGAAT
102902630 AAAAA
1 AAAAA
102902635 GATAGGAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (14 bp):
AAAAAAATAAGAAT
Found at i:102914248 original size:27 final size:26
Alignment explanation
Indices: 102914218--102914285 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 26
102914208 GGATAGGTAT
102914218 ATAATATAATATGAAA-AATATATGTAC
1 ATAATATAATATGAAAGAATATA--TAC
* *
102914245 ATAAGATAATGT-AAAGAATATATAC
1 ATAATATAATATGAAAGAATATATAC
102914270 ATAACTAATAATATGA
1 ATAA-T-ATAATATGA
102914286 GAAGTACGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
25 7 0.21
26 3 0.09
27 22 0.67
28 1 0.03
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (26 bp):
ATAATATAATATGAAAGAATATATAC
Found at i:102914658 original size:3 final size:3
Alignment explanation
Indices: 102914644--102914694 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
102914634 AAACATAAAC
* *
102914644 TAA TACA TAA TAA TAT TAA TAA TAA TAA -AA TTAA TAA T-A TAA AAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
102914689 TAA TAA
1 TAA TAA
102914695 GAGTATTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 4 0.10
3 31 0.77
4 5 0.12
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:102914676 original size:15 final size:15
Alignment explanation
Indices: 102914644--102914694 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
102914634 AAACATAAAC
*
102914644 TAATACATAATAATAT
1 TAATA-ATAATAAAAT
102914660 TAATAATAATAAAAT
1 TAATAATAATAAAAT
*
102914675 TAATAAT-ATAAAAA
1 TAATAATAATAAAAT
102914689 TAATAA
1 TAATAA
102914695 GAGTATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.36
15 16 0.48
16 5 0.15
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (15 bp):
TAATAATAATAAAAT
Found at i:102915353 original size:18 final size:20
Alignment explanation
Indices: 102915317--102915353 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
102915307 TTAATAAAAC
*
102915317 ATATGTTTTTATGTGTTTTG
1 ATATGTTTTTATGTATTTTG
102915337 ATAT-TTTTTA-GTATTTT
1 ATATGTTTTTATGTATTTT
102915354 TGTGTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 6 0.38
20 4 0.25
ACGTcount: A:0.19, C:0.00, G:0.14, T:0.68
Consensus pattern (20 bp):
ATATGTTTTTATGTATTTTG
Found at i:102916674 original size:75 final size:75
Alignment explanation
Indices: 102916576--102916756 Score: 213
Period size: 75 Copynumber: 2.4 Consensus size: 75
102916566 AGCATGGGAA
* * ** *** *
102916576 CTGAGGCTCAACTCACTTTTCGCAATATGAGTTGATTTTTTTTGACA-AC-AAAAATTGAAATTA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--AATTAAAACACACAAAAAATTGAAAATA
*
102916639 CCTCAGCGTGTC
64 CCTCAGCGTGCC
*
102916651 CTGAGGCTCGACTCACCTCTCGCAATATGAGTTGAAATTAAAACACACAAAAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACACAAAAAATTGAAAATACC
*
102916716 TCAGTGTGCC
66 TCAGCGTGCC
* *
102916726 CCGAGGCTCAACTCACCTCTAGCAATATGAG
1 CTGAGGCTCAACTCACCTCTCGCAATATGAG
102916757 CTAATTTTGA
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
73 5 0.06
74 2 0.02
75 83 0.92
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (75 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACACAAAAAATTGAAAATACC
TCAGCGTGCC
Found at i:102916833 original size:54 final size:55
Alignment explanation
Indices: 102916733--102916839 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 55
102916723 GCCCCGAGGC
* *
102916733 TCAACTCACCTCTAGCAATATGAGCTAATTTTGAAAAAGTAGAAATT-AAAAAGT
1 TCAACCCACCTCTAGCAATATGAGCTAATTTTGAAAAAGCAGAAATTGAAAAAGT
* * * * *
102916787 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAAA
1 TCAACCCACCTCTAGCAATATGAGCTAATT-TTGAAAAAGCAGAAATTGAAAAA
102916840 AGAAATTGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
54 32 0.73
55 12 0.27
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGCTAATTTTGAAAAAGCAGAAATTGAAAAAGT
Found at i:102917172 original size:54 final size:52
Alignment explanation
Indices: 102917046--102917245 Score: 241
Period size: 56 Copynumber: 3.8 Consensus size: 52
102917036 ATGTGACCCG
* * *
102917046 AGGCTCAACTCATCTCTTGCAATATGAGTTGATTTTGAAAAAC---A--AAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTGAAAAACAAAATTAAA
102917093 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAAACAGAAATTAAA
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTG-TTTTTGAAAAACA-AAATTAAA
* *
102917147 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTG---TTTTTGAAAAACA-AAATTAAA
102917203 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTG-TTTTTGAAAAA
102917246 ACTAGAATTG
Statistics
Matches: 134, Mismatches: 8, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
46 1 0.01
47 27 0.20
48 11 0.08
52 1 0.01
54 43 0.32
55 1 0.01
56 50 0.37
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.30
Consensus pattern (52 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTGAAAAACAAAATTAAA
Found at i:102917380 original size:71 final size:71
Alignment explanation
Indices: 102917264--102917402 Score: 224
Period size: 71 Copynumber: 2.0 Consensus size: 71
102917254 TGGAAAGTAG
* *
102917264 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGG
102917329 AAACAT
66 AAACAT
* * **
102917335 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGG
1 AAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGG
102917400 AAA
66 AAA
102917403 AGTAAAAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGG
AAACAT
Found at i:102917605 original size:60 final size:60
Alignment explanation
Indices: 102917512--102917637 Score: 225
Period size: 60 Copynumber: 2.1 Consensus size: 60
102917502 AAGCATAAAT
* **
102917512 TGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTC
1 TGAAAATACCTCAACGTGAATTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTC
102917572 TGAAAATACCTCAACGTGAATTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTC
1 TGAAAATACCTCAACGTGAATTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTC
102917632 TGAAAA
1 TGAAAA
102917638 CATGAATTAA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (60 bp):
TGAAAATACCTCAACGTGAATTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTC
Found at i:102930152 original size:27 final size:26
Alignment explanation
Indices: 102930122--102930189 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 26
102930112 GGATAGGTAT
102930122 ATAATATAATATGAAA-AATATATGTAC
1 ATAATATAATATGAAAGAATATA--TAC
* *
102930149 ATAAGATAATGT-AAAGAATATATAC
1 ATAATATAATATGAAAGAATATATAC
102930174 ATAACTAATAATATGA
1 ATAA-T-ATAATATGA
102930190 GAAGTACGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
25 7 0.21
26 3 0.09
27 22 0.67
28 1 0.03
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (26 bp):
ATAATATAATATGAAAGAATATATAC
Found at i:102930562 original size:3 final size:3
Alignment explanation
Indices: 102930548--102930598 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
102930538 AAACATAAAC
* *
102930548 TAA TACA TAA TAA TAT TAA TAA TAA TAA -AA TTAA TAA T-A TAA AAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
102930593 TAA TAA
1 TAA TAA
102930599 GAGTATTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 4 0.10
3 31 0.77
4 5 0.12
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:102930580 original size:15 final size:15
Alignment explanation
Indices: 102930548--102930598 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
102930538 AAACATAAAC
*
102930548 TAATACATAATAATAT
1 TAATA-ATAATAAAAT
102930564 TAATAATAATAAAAT
1 TAATAATAATAAAAT
*
102930579 TAATAAT-ATAAAAA
1 TAATAATAATAAAAT
102930593 TAATAA
1 TAATAA
102930599 GAGTATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.36
15 16 0.48
16 5 0.15
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (15 bp):
TAATAATAATAAAAT
Found at i:102931244 original size:18 final size:20
Alignment explanation
Indices: 102931208--102931244 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
102931198 TTAATAATAC
*
102931208 ATATGTTTTTATGTGTTTTG
1 ATATGTTTTTATGTATTTTG
102931228 ATAT-TTTTTA-GTATTTT
1 ATATGTTTTTATGTATTTT
102931245 TGTGTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 6 0.38
20 4 0.25
ACGTcount: A:0.19, C:0.00, G:0.14, T:0.68
Consensus pattern (20 bp):
ATATGTTTTTATGTATTTTG
Found at i:102934052 original size:37 final size:37
Alignment explanation
Indices: 102934010--102934094 Score: 98
Period size: 37 Copynumber: 2.3 Consensus size: 37
102934000 CTTCTACTGA
* **
102934010 ATTATGCCATGCAAGTGAATCTAGCGGACCTCCATGG
1 ATTATGCCATGCAAGCGAATCTAGCAAACCTCCATGG
* * * * *
102934047 ATTATGCCATGTAGGCGAATCTGGCAAACCTTCTTGG
1 ATTATGCCATGCAAGCGAATCTAGCAAACCTCCATGG
102934084 ATTATGCCATG
1 ATTATGCCATG
102934095 GCCATGGAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (37 bp):
ATTATGCCATGCAAGCGAATCTAGCAAACCTCCATGG
Found at i:102934173 original size:22 final size:22
Alignment explanation
Indices: 102934148--102934218 Score: 83
Period size: 22 Copynumber: 3.2 Consensus size: 22
102934138 CCACAAAGTC
*
102934148 TCATACTACTCTGAAAGGGTTT
1 TCATACTACTCTGAAAGGGCTT
*
102934170 TCATACTACCCAT-AAAGGGCTT
1 TCATACTACTC-TGAAAGGGCTT
*
102934192 TCATACTACT-TGTAAAGGACTT
1 TCATACTACTCTG-AAAGGGCTT
102934214 TCATA
1 TCATA
102934219 TCCATGTGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
20 1 0.02
22 40 0.95
23 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (22 bp):
TCATACTACTCTGAAAGGGCTT
Found at i:102935953 original size:25 final size:25
Alignment explanation
Indices: 102935888--102935956 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
102935878 CATCCCGACC
* * *
102935888 CACAGCTCT-TGTGAGAAATTATAGT
1 CACAGCT-TGTGTGAGCATTTACAGT
* *
102935913 TACAGATTGTGTGAGCATTTACAGT
1 CACAGCTTGTGTGAGCATTTACAGT
102935938 CACAGCTTGTGTGAGCATT
1 CACAGCTTGTGTGAGCATT
102935957 CTTCCCGCGT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 1 0.03
25 35 0.97
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (25 bp):
CACAGCTTGTGTGAGCATTTACAGT
Found at i:102936059 original size:40 final size:40
Alignment explanation
Indices: 102936015--102936112 Score: 169
Period size: 40 Copynumber: 2.5 Consensus size: 40
102936005 AAATGAATAA
*
102936015 ATGAAATGTTTATATGAATCAGTTATATGGAAATAGATAT
1 ATGAAATGGTTATATGAATCAGTTATATGGAAATAGATAT
*
102936055 ATGAAATGGTTATATGAATTAGTTATATGGAAATAGATAT
1 ATGAAATGGTTATATGAATCAGTTATATGGAAATAGATAT
*
102936095 ATGGAATGGTTATATGAA
1 ATGAAATGGTTATATGAA
102936113 AATAAATATA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.42, C:0.01, G:0.20, T:0.37
Consensus pattern (40 bp):
ATGAAATGGTTATATGAATCAGTTATATGGAAATAGATAT
Found at i:102936066 original size:27 final size:27
Alignment explanation
Indices: 102936024--102936139 Score: 96
Period size: 27 Copynumber: 4.3 Consensus size: 27
102936014 AATGAAATGT
102936024 TTATATG-AATCAGTTATATGGAAATAG
1 TTATATGAAAT-AGTTATATGGAAATAG
* * *
102936051 ATATATGAAATGGTTATAT-GAATTAG
1 TTATATGAAATAGTTATATGGAAATAG
* *
102936077 TTATATGGAAATAGATATATGG-AATGG
1 TTATAT-GAAATAGTTATATGGAAATAG
** * *
102936104 TTATATGAAAATAAATATA-CGAAATGG
1 TTATATG-AAATAGTTATATGGAAATAG
102936131 TTATATGAA
1 TTATATGAA
102936140 TCGATTATAC
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
26 15 0.20
27 55 0.74
28 4 0.05
ACGTcount: A:0.44, C:0.02, G:0.19, T:0.35
Consensus pattern (27 bp):
TTATATGAAATAGTTATATGGAAATAG
Found at i:102936128 original size:40 final size:40
Alignment explanation
Indices: 102936015--102936139 Score: 119
Period size: 40 Copynumber: 3.1 Consensus size: 40
102936005 AAATGAATAA
* ** *
102936015 ATGAAATGTTTATATG-AATCAGTTATATGGAAATAGATAT
1 ATGAAATGGTTATATGAAAT-AAATATATCGAAATAGATAT
* ** *
102936055 ATGAAATGGTTATATGAATTAGTTATATGGAAATAGATAT
1 ATGAAATGGTTATATGAAATAAATATATCGAAATAGATAT
* * *
102936095 ATGGAATGGTTATATGAAAATAAATATA-CGAAATGGTTAT
1 ATGAAATGGTTATATG-AAATAAATATATCGAAATAGATAT
102936135 ATGAA
1 ATGAA
102936140 TCGATTATAC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
40 63 0.86
41 10 0.14
ACGTcount: A:0.44, C:0.02, G:0.19, T:0.35
Consensus pattern (40 bp):
ATGAAATGGTTATATGAAATAAATATATCGAAATAGATAT
Found at i:102936148 original size:67 final size:67
Alignment explanation
Indices: 102936036--102936180 Score: 177
Period size: 67 Copynumber: 2.2 Consensus size: 67
102936026 ATATGAATCA
* * * * *
102936036 GTTATATGGAAATAGATATATGAAATGGTTATATGAATTAGTTATA-TGGAAATAGATATATGGA
1 GTTATATGAAAATAAATATACGAAATGGTTATATGAATGAGTTATACT-GAAATAGATATATGAA
102936100 ATG
65 ATG
**
102936103 GTTATATGAAAATAAATATACGAAATGGTTATATGAATCGA-TTATACTTTAATAGATATATGAA
1 GTTATATGAAAATAAATATACGAAATGGTTATATGAAT-GAGTTATACTGAAATAGATATATGAA
102936167 ATG
65 ATG
* *
102936170 TTTATACGAAA
1 GTTATATGAAA
102936181 TGTTTTTATA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
67 65 0.97
68 2 0.03
ACGTcount: A:0.43, C:0.03, G:0.18, T:0.36
Consensus pattern (67 bp):
GTTATATGAAAATAAATATACGAAATGGTTATATGAATGAGTTATACTGAAATAGATATATGAAA
TG
Found at i:102942077 original size:27 final size:27
Alignment explanation
Indices: 102942047--102942104 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
102942037 TTAACAGGTT
102942047 ATGGGAGGTCCCAATACCCTAAGGGTC
1 ATGGGAGGTCCCAATACCCTAAGGGTC
*
102942074 ATGGGTGGTCCCAATACCCTAAGGGTC
1 ATGGGAGGTCCCAATACCCTAAGGGTC
102942101 ATGG
1 ATGG
102942105 ACATTACTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.21
Consensus pattern (27 bp):
ATGGGAGGTCCCAATACCCTAAGGGTC
Found at i:102948300 original size:33 final size:32
Alignment explanation
Indices: 102948262--102948381 Score: 99
Period size: 33 Copynumber: 3.8 Consensus size: 32
102948252 TTTGTAAATT
102948262 TAATGATAAATGAAATATTTTAAAT-TTTGCATA
1 TAATGATAAATG-AATATTTTAAATATTTG-ATA
**
102948295 TAATGATAAAT-AAT-TTTTAAATAATTAAATA
1 TAATGATAAATGAATATTTTAAAT-ATTTGATA
* **
102948326 TAATAATATTTGTAATA-TTTAAATAATTTGATA
1 TAATGATAAATG-AATATTTTAAAT-ATTTGATA
*
102948359 TAATGATAAAT-TATA-TTTAAATA
1 TAATGATAAATGAATATTTTAAATA
102948382 ATATCATAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 13
0.75 0.12 0.14
Matches are distributed among these distances:
30 9 0.13
31 24 0.34
32 2 0.03
33 36 0.51
ACGTcount: A:0.49, C:0.01, G:0.06, T:0.44
Consensus pattern (32 bp):
TAATGATAAATGAATATTTTAAATATTTGATA
Found at i:102948378 original size:31 final size:31
Alignment explanation
Indices: 102948280--102948383 Score: 104
Period size: 31 Copynumber: 3.3 Consensus size: 31
102948270 AATGAAATAT
* *
102948280 TTTAAAT--TTTGCATATAATGATAAATAATT
1 TTTAAATAATTTG-ATATAATGATAAATTATA
** * **
102948310 TTTAAATAATTAAATATAATAATATTTGTAATA
1 TTTAAATAATTTGATATAATGATAAAT-T-ATA
102948343 TTTAAATAATTTGATATAATGATAAATTATA
1 TTTAAATAATTTGATATAATGATAAATTATA
102948374 TTTAAATAAT
1 TTTAAATAAT
102948384 ATCATAAAAT
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
30 7 0.12
31 24 0.41
32 3 0.05
33 24 0.41
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.46
Consensus pattern (31 bp):
TTTAAATAATTTGATATAATGATAAATTATA
Found at i:102952267 original size:21 final size:20
Alignment explanation
Indices: 102952243--102952282 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
102952233 GTTAAAATTA
*
102952243 AAATTTAAAGTAAATTAAACT
1 AAATTAAAAGTAAA-TAAACT
102952264 AAATTAAAAGTAAATAAAC
1 AAATTAAAAGTAAATAAAC
102952283 ATTTAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (20 bp):
AAATTAAAAGTAAATAAACT
Found at i:102957627 original size:19 final size:21
Alignment explanation
Indices: 102957588--102957629 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
102957578 TCTAAATTTA
*
102957588 TTTTTATATTTTTATATTATT
1 TTTTTATATTTTTACATTATT
102957609 TTTTTA-ATTTTTACA-TATT
1 TTTTTATATTTTTACATTATT
102957628 TT
1 TT
102957630 AATTTTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 8 0.40
21 6 0.30
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTTATATTTTTACATTATT
Found at i:102962896 original size:18 final size:18
Alignment explanation
Indices: 102962884--102962923 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
102962874 GTTTTTAATG
102962884 ATTTTAA-AATTTTTATA
1 ATTTTAATAATTTTTATA
*
102962901 ATTTTAATAATTTTTTTA
1 ATTTTAATAATTTTTATA
102962919 ATTTT
1 ATTTT
102962924 TTATTCTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTTAATAATTTTTATA
Found at i:102962925 original size:9 final size:9
Alignment explanation
Indices: 102962845--102962924 Score: 54
Period size: 9 Copynumber: 8.6 Consensus size: 9
102962835 TTTAATGAGC
102962845 TTTTTATAA
1 TTTTTATAA
**
102962854 TTCTTTTATGT
1 -T-TTTTATAA
*
102962865 TTTCTTATAG
1 TTT-TTATAA
*
102962875 TTTTTAATGA
1 TTTTT-ATAA
*
102962885 -TTTTAAAA
1 TTTTTATAA
102962893 TTTTTATAA
1 TTTTTATAA
*
102962902 TTTTAATAA
1 TTTTTATAA
*
102962911 TTTTTTTAA
1 TTTTTATAA
102962920 TTTTT
1 TTTTT
102962925 TATTCTAAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
8 2 0.04
9 35 0.65
10 11 0.20
11 6 0.11
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.66
Consensus pattern (9 bp):
TTTTTATAA
Found at i:102973164 original size:21 final size:20
Alignment explanation
Indices: 102973139--102973203 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
102973129 TAGCCTTCGG
102973139 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTT-TGT
** * *
102973160 GCTT-CAATTAGC-CTTCGG
1 GCTTCCGTTTAGCACTTTGT
102973178 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCGTTTAGCAC-TTTGT
102973199 GCTTC
1 GCTTC
102973204 AGTTAGATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 5 0.15
19 9 0.27
20 7 0.21
21 12 0.36
ACGTcount: A:0.12, C:0.26, G:0.20, T:0.42
Consensus pattern (20 bp):
GCTTCCGTTTAGCACTTTGT
Found at i:102973217 original size:39 final size:39
Alignment explanation
Indices: 102973121--102973209 Score: 160
Period size: 39 Copynumber: 2.3 Consensus size: 39
102973111 GCTCTGATGA
102973121 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
102973160 GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
102973199 GCTTCAGTTAG
1 GCTTCAGTTAG
102973210 ATTTCGGGTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.13, C:0.25, G:0.22, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:102981230 original size:27 final size:21
Alignment explanation
Indices: 102981171--102981217 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
102981161 AGCCCCCCCC
102981171 AAAAAAAACCTAACCCAAAAA
1 AAAAAAAACCTAACCCAAAAA
102981192 AAAAAAAACCTAACCCAAAAA
1 AAAAAAAACCTAACCCAAAAA
102981213 AAAAA
1 AAAAA
102981218 CTAAGAAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.74, C:0.21, G:0.00, T:0.04
Consensus pattern (21 bp):
AAAAAAAACCTAACCCAAAAA
Found at i:102982339 original size:19 final size:19
Alignment explanation
Indices: 102982252--102982339 Score: 63
Period size: 19 Copynumber: 4.3 Consensus size: 19
102982242 TAATATTTTC
*
102982252 TTTTATTGTAGATATTATTA
1 TTTTA-TGTACATATTATTA
102982272 TTCTTAT-TACATACTT-TTA
1 TT-TTATGTACATA-TTATTA
* *
102982291 TTATATGCACATATATATATGTA
1 TTTTATGTAC--ATAT-TAT-TA
102982314 TTTTTATGTACATATTATTA
1 -TTTTATGTACATATTATTA
102982334 TTTTAT
1 TTTTAT
102982340 ATTATTATTA
Statistics
Matches: 54, Mismatches: 5, Indels: 19
0.69 0.06 0.24
Matches are distributed among these distances:
18 3 0.06
19 18 0.33
20 8 0.15
21 10 0.19
22 5 0.09
23 2 0.04
24 8 0.15
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.57
Consensus pattern (19 bp):
TTTTATGTACATATTATTA
Found at i:102984804 original size:24 final size:24
Alignment explanation
Indices: 102984761--102984810 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
102984751 TTCCTTTCTT
*
102984761 TTGCATTCATTCCATACATTTGCA
1 TTGCATTCATTCCATACATTGGCA
*
102984785 TTGCATTGCATTGCAT-CATTGGCA
1 TTGCATT-CATTCCATACATTGGCA
102984809 TT
1 TT
102984811 AAACTTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (24 bp):
TTGCATTCATTCCATACATTGGCA
Found at i:102987315 original size:14 final size:14
Alignment explanation
Indices: 102987296--102987330 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
102987286 ACAGTGGAAG
102987296 AAGGATTAGAAAAA
1 AAGGATTAGAAAAA
* *
102987310 AAGGATCAGAAAAG
1 AAGGATTAGAAAAA
102987324 AAGGATT
1 AAGGATT
102987331 GCAAGAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.57, C:0.03, G:0.26, T:0.14
Consensus pattern (14 bp):
AAGGATTAGAAAAA
Found at i:102991901 original size:18 final size:18
Alignment explanation
Indices: 102991866--102991899 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
102991856 GTACAAGAGC
102991866 CTCAACGCAAGGACAAAG
1 CTCAACGCAAGGACAAAG
*
102991884 CTCAAC-CAAGGGCAAA
1 CTCAACGCAAGGACAAA
102991900 AGAGTGATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.44, C:0.29, G:0.21, T:0.06
Consensus pattern (18 bp):
CTCAACGCAAGGACAAAG
Found at i:102992302 original size:68 final size:69
Alignment explanation
Indices: 102992213--102992483 Score: 263
Period size: 62 Copynumber: 3.9 Consensus size: 69
102992203 GTTTTATTTC
* *
102992213 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTGTTGTCAATTTT
1 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGTTGTCAATTTT
*
102992278 TT-G
66 TTAA
* ** *
102992281 TATGTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGA---G--GT--ATTTT
1 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGTTGTCAATTTT
102992339 TTAA
66 TTAA
* *
102992343 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAATTT
1 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-GTTGTCAA--T
102992407 TTGTTGTCAA
63 TT-TT-T-AA
* * * * * * *
102992417 AAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTCAATT
1 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTGTTGTCAATT
102992482 TT
64 TT
102992484 CGTTTTTCAA
Statistics
Matches: 169, Mismatches: 17, Indels: 29
0.79 0.08 0.13
Matches are distributed among these distances:
61 7 0.04
62 45 0.27
63 2 0.01
65 1 0.01
67 1 0.01
68 44 0.26
69 1 0.01
71 3 0.02
72 2 0.01
73 2 0.01
74 43 0.25
75 3 0.02
76 15 0.09
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (69 bp):
AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGTTGTCAATTTT
TTAA
Found at i:102992483 original size:76 final size:74
Alignment explanation
Indices: 102992341--102993600 Score: 731
Period size: 72 Copynumber: 16.6 Consensus size: 74
102992331 GGTATTTTTT
* *
102992341 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
102992406 TTTGTTGTC
66 TTTGTTGTC
* * *
102992415 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCCGAGGTAATTTCAA
* *
102992480 TTTTCGTTTTTC
64 TTTTTG-TTGTC
***** *** * * * * * * *
102992492 AATTTCTGCCTTTCAAAAAAAATTAACTCATATTACGAGAGGTGAGTGGAGCCTCAGGACACGCT
1 AA-----AAAAATCAACTCATATT---GC-GA-GA-G-G---CGAGTTGAGCCTCAGGACACGCC
**
102992557 GAGGTAATTTCAATTTCCGTTGTC
51 GAGGTAATTTCAATTTTTGTTGTC
* * * *
102992581 AAAAAAATCAACTCGTATTGCGAGAGGCAAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCCGAGGTAATTTCAA
* *
102992646 TTTCCGTTTTTTAATTTCTGCC
64 --------TTTT--TGT-TGTC
*** * * * * * *
102992668 TTTCAAAA-AAAATCA-ACT-C-ATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTA
1 -AAAAAAATCAACTCATATTGCGAGA--G-GCGA-GT---TG-AGCCTCAGGACACGCCGAGGTA
*
102992729 ATTTCAATTTCTGTTGTC
57 ATTTCAATTTTTGTTGTC
*** * * * * *
102992747 AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATATGCTGAGGTATTTTCA
1 ---AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCA
*
102992812 ATTTTTGTCTTTC
63 ATTTTTGT-TGTC
** * *
102992825 AAAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
*
102992890 TCTGCTT-TC
66 TTTG-TTGTC
* *** * *
102992899 --AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
* *
102992962 TATGTTTTC
66 TTTGTTGTC
* * * * *** * *
102992971 --AAAATTTAACTCATATTACGAAAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
* * *
102993034 TCTATTTTC
66 TTTGTTGTC
* *** * ** *
102993043 --AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
* *
102993106 TCTGTTTTC
66 TTTGTTGTC
* * * * *
102993115 AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG---ACACGCCGAGGTAATTTCA
*
102993179 ATTTTTGTCTTTC
63 ATTTTTGT-TGTC
* * *
102993192 AAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
* *
102993257 TCTGTTTTC
66 TTTGTTGTC
* *** * *
102993266 --AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
* *
102993329 TCTGTTTTC
66 TTTGTTGTC
* * *** * *
102993338 --AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
* *
102993401 TCTGTTTTC
66 TTTGTTGTC
* *** * * ** *
102993410 --AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
* *
102993473 TCTGTTTTC
66 TTTGTTGTC
* * * * *
102993482 AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG---ACACGCCGAGGTAATTTCA
*
102993546 ATTTTTGTCTTTC
63 ATTTTTGT-TGTC
* *
102993559 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG
102993601 ATCACACACT
Statistics
Matches: 975, Mismatches: 148, Indels: 122
0.78 0.12 0.10
Matches are distributed among these distances:
71 2 0.00
72 397 0.41
73 2 0.00
74 125 0.13
75 85 0.09
76 90 0.09
77 122 0.13
78 9 0.01
79 4 0.00
80 3 0.00
81 7 0.01
82 17 0.02
83 2 0.00
84 13 0.01
85 4 0.00
86 5 0.01
87 10 0.01
88 7 0.01
89 7 0.01
90 41 0.04
91 2 0.00
92 21 0.02
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (74 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
TTTGTTGTC
Found at i:102992616 original size:166 final size:164
Alignment explanation
Indices: 102992341--102992962 Score: 780
Period size: 166 Copynumber: 3.9 Consensus size: 164
102992331 GGTATTTTTT
* *
102992341 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTACGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* *
102992406 TTTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGG
66 TCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGG
102992471 TATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCA
131 TATTTTCAA-TTTCGTTTTT-AATTTCTGCCTTTCA
*
102992507 AAAAAAATTAACTCATATTACGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTACGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* * *
102992572 TCCGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCAAGTTGAGCCTTAGGTCACACGCCGAGG
66 TCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGG
102992637 TATTTTCAATTTCCGTTTTTTAATTTCTGCCTTTCA
131 TATTTTCAATTT-CG-TTTTTAATTTCTGCCTTTCA
*
102992673 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTACGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
*** * * * * *
102992738 TCTGTTGTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ATATGCTG
66 TCTGTTGTC---AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCG
*
102992801 AGGTATTTTCAA---------T--TTT-TGTCTTTC-
128 AGGTATTTTCAATTTCGTTTTTAATTTCTGCCTTTCA
* *
102992825 AAAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTACGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* *** * * *
102992890 TCTGCTT-TC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC-TCGG-GACACGCTGAG
66 TCTG-TTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAG
*
102992950 GTAATTTCAATTT
130 GTATTTTCAATTT
102992963 ATGTTTTCAA
Statistics
Matches: 416, Mismatches: 30, Indels: 36
0.86 0.06 0.07
Matches are distributed among these distances:
146 1 0.00
147 52 0.12
152 68 0.16
153 9 0.02
154 3 0.01
156 1 0.00
165 3 0.01
166 221 0.53
167 22 0.05
169 36 0.09
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (164 bp):
AAAAAAATCAACTCATATTACGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
TCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGG
TATTTTCAATTTCGTTTTTAATTTCTGCCTTTCA
Found at i:102992942 original size:72 final size:73
Alignment explanation
Indices: 102992674--102993600 Score: 1141
Period size: 72 Copynumber: 12.6 Consensus size: 73
102992664 TGCCTTTCAA
** *
102992674 AAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
*
102992739 CTGTTGTC
66 CTGTTTTC
* * * *
102992747 AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATATGCTGAGGTATTTTCA
1 ----AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
*
102992812 ATTTTTGTCTTTC
62 ATTTCTGT-TTTC
** **
102992825 AAAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
*
102992890 TCTGCTTTC
65 TCTGTTTTC
* *
102992899 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
*
102992963 ATGTTTTC
66 CTGTTTTC
* * * * *
102992971 -AAAATTTAACTCATATTACGAAAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
*
102993035 CTATTTTC
66 CTGTTTTC
* * * *
102993043 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
102993107 CTGTTTTC
66 CTGTTTTC
* ** * *
102993115 AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCA
*
102993179 ATTTTTGTCTTTC
62 ATTTCTGT-TTTC
* **
102993192 AAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
102993257 TCTGTTTTC
65 TCTGTTTTC
* *
102993266 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
102993330 CTGTTTTC
66 CTGTTTTC
* * *
102993338 -AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
102993402 CTGTTTTC
66 CTGTTTTC
* * * * *
102993410 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
102993474 CTGTTTTC
66 CTGTTTTC
* ** * *
102993482 AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCA
*
102993546 ATTTTTGTCTTTC
62 ATTTCTGT-TTTC
** *
102993559 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 -AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
102993601 ATCACACACT
Statistics
Matches: 759, Mismatches: 76, Indels: 29
0.88 0.09 0.03
Matches are distributed among these distances:
72 399 0.53
73 2 0.00
74 75 0.10
75 84 0.11
76 48 0.06
77 145 0.19
78 6 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
CTGTTTTC
Found at i:102993354 original size:367 final size:367
Alignment explanation
Indices: 102992675--102993600 Score: 1597
Period size: 367 Copynumber: 2.5 Consensus size: 367
102992665 GCCTTTCAAA
* ** * * * *
102992675 AAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* * ** * *
102992740 TGTTGTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ATATGCTGA
66 TGTTTTC---AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGA
*
102992802 GGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAG
127 GGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAG
102992867 GACACGCTGAGGTAATTTCAATTTCTGCTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGA
192 GACACGCTGAGGTAATTTCAATTTCTGCTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGA
*
102992932 GCCTCGGGACACGCTGAGGTAATTTCAATTTATGTTTTCAAAATTTAACTCATATTACGAAAAAT
257 GCCTCGGGACACGCTGAGGTAATTTCAATTTATGTTTTCAAAATTCAACTCATATTACGAAAAAT
102992997 GAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTC
322 GAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTC
102993043 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
102993108 TGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA
66 TGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA
102993173 TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACA
131 TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACA
*
102993238 CGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
196 CGCTGAGGTAATTTCAATTTCTGCTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
* *
102993303 CGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTACGAGAAATGAGT
261 CGGGACACGCTGAGGTAATTTCAATTTATGTTTTCAAAATTCAACTCATATTACGAAAAATGAGT
*
102993368 TGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC
326 TGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTC
*
102993410 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
102993475 TGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA
66 TGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA
* *
102993540 TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
131 TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAG
102993601 ATCACACACT
Statistics
Matches: 533, Mismatches: 22, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
364 1 0.00
365 37 0.07
367 431 0.81
368 64 0.12
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (367 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA
TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTAATTTCAATTTCTGCTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
CGGGACACGCTGAGGTAATTTCAATTTATGTTTTCAAAATTCAACTCATATTACGAAAAATGAGT
TGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTC
Found at i:102994876 original size:22 final size:21
Alignment explanation
Indices: 102994846--102994894 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 21
102994836 CAGATTTCCT
*
102994846 TTTCCCCCTCCCTTCTCTCTTC
1 TTTCTCCCTCCCTT-TCTCTTC
* * *
102994868 TTTCTCCCTTCCTTTTTTTTC
1 TTTCTCCCTCCCTTTCTCTTC
102994889 TTTCTC
1 TTTCTC
102994895 TCTTCAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTCTCCCTCCCTTTCTCTTC
Found at i:102995490 original size:16 final size:16
Alignment explanation
Indices: 102995451--102995491 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
102995441 CTAATATTTT
*
102995451 CTTTTATT-TTAGATA
1 CTTTTATTATTACATA
102995466 -TTATTATTATTACATA
1 CTT-TTATTATTACATA
102995482 CTTTTATTAT
1 CTTTTATTAT
102995492 ATGCACATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
14 2 0.09
15 5 0.23
16 13 0.59
17 2 0.09
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (16 bp):
CTTTTATTATTACATA
Found at i:102995536 original size:19 final size:19
Alignment explanation
Indices: 102995464--102995536 Score: 51
Period size: 19 Copynumber: 3.6 Consensus size: 19
102995454 TTATTTTAGA
102995464 TATTATTATTAT-TACATACT
1 TATTATT-TTATGTACATA-T
* *
102995484 T-TTATTATATGCACATATAT
1 TATTATTTTATGTAC--ATAT
102995504 ATATGTATTTTTATGTACATAT
1 -TAT-TA-TTTTATGTACATAT
102995526 TATTATTTTAT
1 TATTATTTTAT
102995537 ATTATTATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 15
0.69 0.07 0.25
Matches are distributed among these distances:
18 3 0.07
19 13 0.31
20 4 0.10
21 7 0.17
22 5 0.12
23 2 0.05
24 8 0.19
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (19 bp):
TATTATTTTATGTACATAT
Found at i:102999936 original size:21 final size:21
Alignment explanation
Indices: 102999911--102999951 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
102999901 TACTAGGTAG
102999911 ATAAAAAATGAATAC-TACGAT
1 ATAAAAAAT-AATACATACGAT
*
102999932 ATAAAGAATAATACATACGA
1 ATAAAAAATAATACATACGA
102999952 AGCAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.22
Consensus pattern (21 bp):
ATAAAAAATAATACATACGAT
Found at i:103000736 original size:17 final size:18
Alignment explanation
Indices: 103000697--103000739 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
103000687 TAAGGAAAAT
*
103000697 AATATATATAATAAGTAAT
1 AATA-ATATAATAAGTAAA
*
103000716 AATAATAT-ATAATTAAA
1 AATAATATAATAAGTAAA
103000733 AATAATA
1 AATAATA
103000740 CTCATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 14 0.64
18 4 0.18
19 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AATAATATAATAAGTAAA
Found at i:103000736 original size:20 final size:19
Alignment explanation
Indices: 103000580--103000739 Score: 67
Period size: 20 Copynumber: 7.9 Consensus size: 19
103000570 TAATATAAAC
*
103000580 ATATAAGAAAAATAATAGAT
1 ATATAATAAAAATAATA-AT
* *
103000600 ATA-AAGTAACATATAAACAAT
1 ATATAA-TAA-AAAT-AATAAT
*
103000621 ATATATATAAGTAATTAATAA-
1 ATATA-ATAA--AAATAATAAT
**
103000642 ATATAATATATTATAATAAT
1 ATATAATA-AAAATAATAAT
*
103000662 ATATAA-AAAGATGTAAATAAT
1 ATATAATAAA-A-AT-AATAAT
* **
103000683 AATTTAAGGAAAATAAT-AT
1 -ATATAATAAAAATAATAAT
*
103000702 ATATAATAAGTAATAATAAT
1 ATATAATAA-AAATAATAAT
103000722 ATATAATTAAAAATAATA
1 ATATAA-TAAAAATAATA
103000740 CTCATAATAA
Statistics
Matches: 103, Mismatches: 21, Indels: 32
0.66 0.13 0.21
Matches are distributed among these distances:
18 7 0.07
19 17 0.17
20 33 0.32
21 24 0.23
22 17 0.17
23 5 0.05
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.33
Consensus pattern (19 bp):
ATATAATAAAAATAATAAT
Found at i:103005492 original size:24 final size:23
Alignment explanation
Indices: 103005442--103005492 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 23
103005432 TTTTCCAATT
*
103005442 TTATTTTGTTTTTCATTATTTTTA
1 TTATTTTGTTTTT-ATTATTTTGA
103005466 TTATTTTGTTTTT-TTCATTGTTGA
1 TTATTTTGTTTTTATT-ATT-TTGA
103005490 TTA
1 TTA
103005493 AGAAAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 2 0.08
23 3 0.12
24 19 0.79
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.73
Consensus pattern (23 bp):
TTATTTTGTTTTTATTATTTTGA
Found at i:103017358 original size:21 final size:21
Alignment explanation
Indices: 103017334--103017409 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
103017324 TGAGTTTCAG
103017334 TTTAACCCTTATGGGTTTCCA
1 TTTAACCCTTATGGGTTTCCA
* ** *
103017355 TTTAGCTCC-TATAAGCTTCCA
1 TTTAAC-CCTTATGGGTTTCCA
* *
103017376 TTTAACCCTTACGGGTTTCCG
1 TTTAACCCTTATGGGTTTCCA
* *
103017397 TTTAGCACTTATG
1 TTTAACCCTTATG
103017410 TGCTTCTGTG
Statistics
Matches: 40, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
20 2 0.05
21 36 0.90
22 2 0.05
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (21 bp):
TTTAACCCTTATGGGTTTCCA
Found at i:103018471 original size:26 final size:25
Alignment explanation
Indices: 103018434--103018516 Score: 130
Period size: 26 Copynumber: 3.2 Consensus size: 25
103018424 TGATACAAAT
103018434 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
103018460 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
*
103018486 TGATAATTGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
103018511 TGATAA
1 TGATAA
103018517 GAATTTCATG
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
25 10 0.19
26 42 0.78
27 2 0.04
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:103020549 original size:137 final size:137
Alignment explanation
Indices: 103020303--103020589 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
103020293 GAGTAGTCTC
103020303 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
103020368 TGTTATCTGAATAAGGGGCTAAGGCCCGGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
103020433 ACTGTTA
131 ACTGTTA
*
103020440 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATTTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
103020505 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
103020570 ACTGTTA
131 ACTGTTA
**
103020577 CCTGAATGGGCTT
1 CCCAAATGGGCTT
103020590 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
ACTGTTA
Found at i:103024342 original size:26 final size:25
Alignment explanation
Indices: 103024305--103024387 Score: 130
Period size: 26 Copynumber: 3.2 Consensus size: 25
103024295 TGATACAAAT
*
103024305 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
103024331 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
*
103024357 TGATAATGAGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
103024382 TGATAA
1 TGATAA
103024388 GAATTTCATG
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
25 10 0.19
26 42 0.78
27 2 0.04
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:103026417 original size:137 final size:137
Alignment explanation
Indices: 103026171--103026457 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
103026161 GAATAGTCTC
103026171 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
103026236 TGTTATCTGAATAAGGGGCTAAGGCCCGGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
103026301 ACTGTTA
131 ACTGTTA
103026308 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
103026373 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
103026438 ACTGTTA
131 ACTGTTA
**
103026445 CCTGAATGGGCTT
1 CCCAAATGGGCTT
103026458 AAGCCCAATA
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
ACTGTTA
Found at i:103031621 original size:17 final size:17
Alignment explanation
Indices: 103031601--103031699 Score: 144
Period size: 17 Copynumber: 5.6 Consensus size: 17
103031591 CAATGGTATG
103031601 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
103031618 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
103031636 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
103031653 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
103031671 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
103031690 CAATCTTAGA
1 CAATCTTAGA
103031700 AGATATGATT
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 31 0.42
18 31 0.42
19 11 0.15
20 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:103031639 original size:35 final size:35
Alignment explanation
Indices: 103031599--103031699 Score: 184
Period size: 35 Copynumber: 2.8 Consensus size: 35
103031589 TTCAATGGTA
103031599 TGCAATCTTAGATATGATACAATCTTAGATATGAT
1 TGCAATCTTAGATATGATACAATCTTAGATATGAT
103031634 TGCAATCTTAGATATGATACAATCTTAGATATGAT
1 TGCAATCTTAGATATGATACAATCTTAGATATGAT
103031669 TGCAATCTTAGATATGATATACAATCTTAGA
1 TGCAATCTTAGATATG--ATACAATCTTAGA
103031700 AGATATGATT
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
35 51 0.80
37 13 0.20
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
TGCAATCTTAGATATGATACAATCTTAGATATGAT
Found at i:103031641 original size:18 final size:18
Alignment explanation
Indices: 103031601--103031699 Score: 157
Period size: 18 Copynumber: 5.6 Consensus size: 18
103031591 CAATGGTATG
103031601 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
103031618 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
103031636 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
103031653 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
103031671 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
103031690 CAATCTTAGA
1 CAATCTTAGA
103031700 AGATATGATT
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
17 31 0.41
18 33 0.44
19 11 0.15
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:103032231 original size:15 final size:16
Alignment explanation
Indices: 103032188--103032246 Score: 50
Period size: 16 Copynumber: 3.5 Consensus size: 16
103032178 CAATATATTT
*
103032188 TATATATTTTATATAA
1 TATATTTTTTATATAA
103032204 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
103032220 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
103032238 TTATATTTT
1 -TATATTTT
103032247 AAATTTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
15 6 0.17
16 10 0.29
17 10 0.29
18 1 0.03
19 8 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:103032250 original size:30 final size:29
Alignment explanation
Indices: 103032181--103032255 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 29
103032171 TCTAAACCAA
103032181 TATATTTT--ATATATTTTATATAATTAT
1 TATATTTTAAATATATTTTATATAATTAT
* *
103032208 TAT-TCTTATAAATATATTTTTTATTATATAT
1 TATAT-TT-TAAATATATTTTATATAAT-TAT
*
103032239 TATATTTTAAATTTATT
1 TATATTTTAAATATATT
103032256 ATTAAATATC
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
26 1 0.03
27 5 0.13
28 1 0.03
30 23 0.59
31 8 0.21
32 1 0.03
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (29 bp):
TATATTTTAAATATATTTTATATAATTAT
Found at i:103032271 original size:26 final size:26
Alignment explanation
Indices: 103032223--103032272 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
103032213 TTATAAATAT
* * * *
103032223 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
103032249 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
103032273 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:103034054 original size:28 final size:28
Alignment explanation
Indices: 103034014--103034069 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
103034004 ATTCACGGTC
103034014 AGTTTCTAAGTTAGAGAGTTTTATTATG
1 AGTTTCTAAGTTAGAGAGTTTTATTATG
103034042 AGTTTCTAAGTTAGAGAGTTTTATTATG
1 AGTTTCTAAGTTAGAGAGTTTTATTATG
103034070 GAGAACGGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.04, G:0.21, T:0.46
Consensus pattern (28 bp):
AGTTTCTAAGTTAGAGAGTTTTATTATG
Found at i:103034062 original size:16 final size:16
Alignment explanation
Indices: 103034014--103034062 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
103034004 ATTCACGGTC
103034014 AGTTTCTAAGTTAGAG
1 AGTTTCTAAGTTAGAG
*
103034030 AGTTT-T-A-TTA-TG
1 AGTTTCTAAGTTAGAG
103034042 AGTTTCTAAGTTAGAG
1 AGTTTCTAAGTTAGAG
103034058 AGTTT
1 AGTTT
103034063 TATTATGGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
12 6 0.22
13 4 0.15
14 2 0.07
15 4 0.15
16 11 0.41
ACGTcount: A:0.29, C:0.04, G:0.22, T:0.45
Consensus pattern (16 bp):
AGTTTCTAAGTTAGAG
Found at i:103039183 original size:44 final size:44
Alignment explanation
Indices: 103039044--103039218 Score: 126
Period size: 44 Copynumber: 4.0 Consensus size: 44
103039034 AAGAAACAAG
* * * * *
103039044 ATTTGGCATCCCTATGTTTATAGGGAACAGAACGAAGATAGCAG
1 ATTTGGCATCCCTGTGTTCATAGAGAACAGATCGAAGATAGCAA
* * * * * * ** *
103039088 ATCTGACATTCCTGTGCTT-ACAGCGAAGCAGATTGAAGATTTCAGC
1 ATTTGGCATCCCTGTG-TTCATAGAGAA-CAGATCGAAGATAGCA-A
*
103039134 A--TGGCATCCCTGTGTTCATATG-GAAC-GAGTTGAAGATAGCAA
1 ATTTGGCATCCCTGTGTTCATA-GAGAACAGA-TCGAAGATAGCAA
*
103039176 ATTTGGCATCCCTGTGTTTATAGAGAACAGATCGAAGATAGCA
1 ATTTGGCATCCCTGTGTTCATAGAGAACAGATCGAAGATAGCA
103039219 GATCTAACCT
Statistics
Matches: 102, Mismatches: 19, Indels: 20
0.72 0.13 0.14
Matches are distributed among these distances:
42 3 0.03
43 14 0.14
44 67 0.66
45 17 0.17
46 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
ATTTGGCATCCCTGTGTTCATAGAGAACAGATCGAAGATAGCAA
Found at i:103039375 original size:121 final size:121
Alignment explanation
Indices: 103039213--103039432 Score: 332
Period size: 121 Copynumber: 1.8 Consensus size: 121
103039203 CAGATCGAAG
* * * * **
103039213 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATCCTTATGT
1 ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTAGCATCCTTATAC
*
103039278 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTTAGACAC
66 TTACAAGGAACAAATCGAAGACATAGCAGATTTGACTCTCAGATGTTCTTAGACAC
* * *
103039334 ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTAGTATCCTTGTAC
1 ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTAGCATCCTTATAC
* *
103039399 TTACAAGGAGCAAATCGAAGACATAGCTGATTTG
66 TTACAAGGAACAAATCGAAGACATAGCAGATTTG
103039433 GCTTTCACGT
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
121 87 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (121 bp):
ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTAGCATCCTTATAC
TTACAAGGAACAAATCGAAGACATAGCAGATTTGACTCTCAGATGTTCTTAGACAC
Found at i:103039671 original size:83 final size:83
Alignment explanation
Indices: 103039581--103040133 Score: 923
Period size: 83 Copynumber: 6.7 Consensus size: 83
103039571 GAAGTAGATC
*
103039581 CAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCT-A
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
103039645 GGATGTTCTCAAACAGACT
66 -GATGTTCTCAAACAGACT
103039664 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCT-A
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
103039728 GGATGTTTTCAAACAGACT
66 -GATGTTCTCAAACAGACT
*
103039747 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCG
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
103039812 GATGTTCTCAAACAGATT
66 GATGTTCTCAAACAGACT
* *
103039830 CAAGATGGTTTGGCGTTCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
103039895 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
*
103039913 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
103039978 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * * ** *
103039996 CAAGATGATTTGGCATTCTTGTGGTTACAAAAAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
103040061 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * *
103040079 TAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGA-GACATAGCTGATT
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATT
103040134 TGGCTTTCAC
Statistics
Matches: 446, Mismatches: 23, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
82 12 0.03
83 434 0.97
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
GATGTTCTCAAACAGACT
Found at i:103040928 original size:17 final size:17
Alignment explanation
Indices: 103040908--103041006 Score: 135
Period size: 17 Copynumber: 5.6 Consensus size: 17
103040898 CAATGATATG
103040908 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
103040925 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
103040943 CAATATTAGATATGATA
1 CAATCTTAGATATGATA
*
103040960 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
103040978 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
103040997 CAATCTTAGA
1 CAATCTTAGA
103041007 AGATATGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
17 30 0.42
18 30 0.42
19 11 0.15
20 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:103040946 original size:35 final size:35
Alignment explanation
Indices: 103040900--103041006 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
103040890 ATAATCTTCA
103040900 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
*
103040936 ATGATTGCAATATTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
103040971 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
103041007 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 49 0.73
36 5 0.07
37 13 0.19
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.36
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:103040951 original size:18 final size:18
Alignment explanation
Indices: 103040900--103041006 Score: 146
Period size: 18 Copynumber: 5.9 Consensus size: 18
103040890 ATAATCTTCA
103040900 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
103040919 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
103040936 ATGATTGCAATATTAGAT
1 ATGATTGCAATCTTAGAT
*
103040954 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
103040971 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
103040989 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
103041007 AGATATGATT
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
17 31 0.40
18 32 0.41
19 15 0.19
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.36
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:103041535 original size:15 final size:16
Alignment explanation
Indices: 103041492--103041550 Score: 50
Period size: 16 Copynumber: 3.5 Consensus size: 16
103041482 CAATATATTT
*
103041492 TATATATTTTATATAA
1 TATATTTTTTATATAA
103041508 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
103041524 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
103041542 TTATATTTT
1 -TATATTTT
103041551 AAATTTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
15 6 0.17
16 10 0.29
17 10 0.29
18 1 0.03
19 8 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:103041554 original size:30 final size:29
Alignment explanation
Indices: 103041485--103041559 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 29
103041475 TCTAAACCAA
103041485 TATATTTT--ATATATTTTATATAATTAT
1 TATATTTTAAATATATTTTATATAATTAT
* *
103041512 TAT-TCTTATAAATATATTTTTTATTATATAT
1 TATAT-TT-TAAATATATTTTATATAAT-TAT
*
103041543 TATATTTTAAATTTATT
1 TATATTTTAAATATATT
103041560 ATTAAATATC
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
26 1 0.03
27 5 0.13
28 1 0.03
30 23 0.59
31 8 0.21
32 1 0.03
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (29 bp):
TATATTTTAAATATATTTTATATAATTAT
Found at i:103041575 original size:26 final size:26
Alignment explanation
Indices: 103041527--103041576 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
103041517 TTATAAATAT
* * * *
103041527 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
103041553 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
103041577 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:103049831 original size:42 final size:42
Alignment explanation
Indices: 103049781--103049865 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
103049771 TTAAGTTTGG
103049781 TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
1 TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
*
103049823 TATATTTTAGAGGATGATTTGTATCATTAATAATTTTTTTAA
1 TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
103049865 T
1 T
103049866 TTATATATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.52
Consensus pattern (42 bp):
TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
Found at i:103050353 original size:3 final size:3
Alignment explanation
Indices: 103050345--103050370 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
103050335 TAATATCCCT
103050345 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
103050371 TGATGTTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:103050557 original size:33 final size:33
Alignment explanation
Indices: 103050520--103050624 Score: 156
Period size: 33 Copynumber: 3.2 Consensus size: 33
103050510 AATTAGACAG
* *
103050520 ATAATTACAGCTTAGATACATTGTTTTCGTATT
1 ATAATTACAGCTTACATACATTGTTTTCATATT
* *
103050553 ATAATTGCAGCTTACATACATTGTTTTCCTATT
1 ATAATTACAGCTTACATACATTGTTTTCATATT
* *
103050586 ATAATTACAGCTTATATACATTGTTTTTATATT
1 ATAATTACAGCTTACATACATTGTTTTCATATT
103050619 ATAATT
1 ATAATT
103050625 TTTTTTAAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 65 1.00
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.48
Consensus pattern (33 bp):
ATAATTACAGCTTACATACATTGTTTTCATATT
Found at i:103050840 original size:42 final size:42
Alignment explanation
Indices: 103050764--103050844 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
103050754 TAATTGACTT
* * *
103050764 TATCACAATTTAAACACGACATATTTAAAGTGATTGCAAACA
1 TATCACAATTCAAACACGACATATCTAAAATGATTGCAAACA
103050806 TATCACAATTCAAACACGACATA-CTAAGAATGATTGCAA
1 TATCACAATTCAAACACGACATATCTAA-AATGATTGCAA
103050845 GCACTTAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 3 0.09
42 32 0.91
ACGTcount: A:0.46, C:0.19, G:0.10, T:0.26
Consensus pattern (42 bp):
TATCACAATTCAAACACGACATATCTAAAATGATTGCAAACA
Found at i:103055783 original size:6 final size:6
Alignment explanation
Indices: 103055774--103055801 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
103055764 ACAAAAGAAA
103055774 ATGGGC ATGGGC ATGGGC ATGGGC ATGG
1 ATGGGC ATGGGC ATGGGC ATGGGC ATGG
103055802 TAAATATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.14, G:0.50, T:0.18
Consensus pattern (6 bp):
ATGGGC
Found at i:103056211 original size:120 final size:120
Alignment explanation
Indices: 103056067--103056603 Score: 1029
Period size: 120 Copynumber: 4.5 Consensus size: 120
103056057 TAATAAATGG
103056067 TAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
1 TAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
*
103056132 TTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
66 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
*
103056187 TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
1 TAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
103056252 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
66 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
103056307 TAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
1 TAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
103056372 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
66 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
* *
103056427 TAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTTAATAATAATTATGTTAATTTATA
1 TAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
*
103056492 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAATAATATTAATTAT
66 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
103056547 TAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 TAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
103056604 TAAATATGAT
Statistics
Matches: 409, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 409 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
TAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
Found at i:103056220 original size:18 final size:17
Alignment explanation
Indices: 103056192--103056226 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
103056182 ATTATTAAGA
*
103056192 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
103056209 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
103056227 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:103056460 original size:18 final size:17
Alignment explanation
Indices: 103056432--103056466 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
103056422 ATTATTAAGA
103056432 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
103056449 ATTTTAATTAAATTATAT
1 ATTTT-ATTAAATTATAT
103056467 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:103056847 original size:16 final size:16
Alignment explanation
Indices: 103056822--103056890 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
103056812 GATTAGCTAT
*
103056822 TACACATCTAATCCAA
1 TACACCTCTAATCCAA
103056838 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
103056855 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
103056871 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
103056887 TACA
1 TACA
103056891 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
16 33 0.67
17 16 0.33
ACGTcount: A:0.38, C:0.36, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:103056865 original size:33 final size:32
Alignment explanation
Indices: 103056822--103056890 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
103056812 GATTAGCTAT
103056822 TACACATCTAATCCAATACACCTCTAATCCCAA
1 TACACATCTAATCCAATACACCTCTAAT-CCAA
* *
103056855 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACATCTAATCCAATACACCTCTAATCCAA
103056887 TACA
1 TACA
103056891 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 8 0.24
33 26 0.76
ACGTcount: A:0.38, C:0.36, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACATCTAATCCAATACACCTCTAATCCAA
Found at i:103057466 original size:18 final size:18
Alignment explanation
Indices: 103057440--103057479 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
103057430 TTGAGAAATT
* *
103057440 AGAATATGATAGAAATGA
1 AGAAGATGAGAGAAATGA
*
103057458 AGAAGATGAGGGAAATGA
1 AGAAGATGAGAGAAATGA
103057476 AGAA
1 AGAA
103057480 TTTTATGCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.30, T:0.15
Consensus pattern (18 bp):
AGAAGATGAGAGAAATGA
Found at i:103068762 original size:40 final size:40
Alignment explanation
Indices: 103068718--103068804 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
103068708 TTGAAATCAA
* * * *
103068718 TTTTTATTTAAAAAAGAATAATAGGAGTCATCACCGATCC
1 TTTTTATTTAAAAAAAAAGAATAGGAGTCACCACCAATCC
* *
103068758 TTTTTATTTAAAAAAAAAGAATAGGAGTCGCCACCAATCT
1 TTTTTATTTAAAAAAAAAGAATAGGAGTCACCACCAATCC
103068798 TTTTTAT
1 TTTTTAT
103068805 GATGTGAGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (40 bp):
TTTTTATTTAAAAAAAAAGAATAGGAGTCACCACCAATCC
Found at i:103071595 original size:24 final size:24
Alignment explanation
Indices: 103071552--103071609 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
103071542 TTTTCACTTT
103071552 TAATTATAATCATTAAAATAATAA
1 TAATTATAATCATTAAAATAATAA
*
103071576 TAATTATTAT-ATTAACAATAATAA
1 TAATTATAATCATTAA-AATAATAA
*
103071600 TAATAATAAT
1 TAATTATAAT
103071610 TTTTTTATTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 5 0.17
24 25 0.83
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (24 bp):
TAATTATAATCATTAAAATAATAA
Found at i:103072431 original size:5 final size:5
Alignment explanation
Indices: 103072423--103072472 Score: 59
Period size: 5 Copynumber: 10.2 Consensus size: 5
103072413 TTTTTTACTT
* *
103072423 ATATA ATATA ATACA ATATA ATATA ATAT- ATAATA AAATA ATAT- ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA ATATA
103072472 A
1 A
103072473 AGCATAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
4 6 0.16
5 31 0.82
6 1 0.03
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (5 bp):
ATATA
Found at i:103072458 original size:15 final size:16
Alignment explanation
Indices: 103072422--103072471 Score: 68
Period size: 15 Copynumber: 3.2 Consensus size: 16
103072412 TTTTTTTACT
*
103072422 TATATAATATAATACA
1 TATATAATATAATATA
103072438 -ATATAATATAATATA
1 TATATAATATAATATA
*
103072453 TA-ATAAAATAATATA
1 TATATAATATAATATA
103072468 TATA
1 TATA
103072472 AAGCATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 28 0.93
16 2 0.07
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
TATATAATATAATATA
Found at i:103073457 original size:20 final size:21
Alignment explanation
Indices: 103073432--103073471 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
103073422 TTTTATATAA
*
103073432 TTATTTTAT-TAATATTATTG
1 TTATTTTATAAAATATTATTG
103073452 TTATTTTATAAAATATTATT
1 TTATTTTATAAAATATTATT
103073472 TTTTCGCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
TTATTTTATAAAATATTATTG
Found at i:103073507 original size:15 final size:14
Alignment explanation
Indices: 103073487--103073579 Score: 57
Period size: 15 Copynumber: 6.3 Consensus size: 14
103073477 GCATTCTTAT
103073487 TTATATATTATATTA
1 TTATATATTATA-TA
103073502 TTATATTATT-TAT-
1 TTATA-TATTATATA
*
103073515 TTATATACGTATATA
1 TTATATA-TTATATA
103073530 CTT-TCATATTATATA
1 -TTAT-ATATTATATA
*
103073545 TTATAATTATTTTATA
1 TTAT-A-TATTATATA
* *
103073561 TTATGTCATTTTATA
1 TTATAT-ATTATATA
103073576 TTAT
1 TTAT
103073580 TACGTTTTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 18
0.74 0.06 0.21
Matches are distributed among these distances:
12 2 0.03
13 6 0.09
14 7 0.11
15 28 0.44
16 21 0.33
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.59
Consensus pattern (14 bp):
TTATATATTATATA
Found at i:103073959 original size:20 final size:19
Alignment explanation
Indices: 103073920--103073961 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
103073910 ATATATTGCA
* *
103073920 TATTAAATACTATTTTTAT
1 TATTAAATACCATGTTTAT
103073939 TATTAAATACCATAGTTTAT
1 TATTAAATACCAT-GTTTAT
103073959 TAT
1 TAT
103073962 ACGAATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.52
Consensus pattern (19 bp):
TATTAAATACCATGTTTAT
Found at i:103075470 original size:3 final size:3
Alignment explanation
Indices: 103075453--103075488 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
103075443 CAAAACACAA
* *
103075453 AAT AAT AAC ATT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
103075489 GATGATGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:103085647 original size:14 final size:14
Alignment explanation
Indices: 103085628--103085657 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
103085618 AGTCGAGGTA
103085628 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
103085642 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
103085656 TT
1 TT
103085658 CAAAAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:103085715 original size:89 final size:90
Alignment explanation
Indices: 103085551--103085734 Score: 273
Period size: 89 Copynumber: 2.0 Consensus size: 90
103085541 TGCCAAGGTA
** *
103085551 TTTTCAAATTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGGTTA
1 TTTTCAAATTCTG-TTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCA
*
103085616 CAAGTCGAGGTATTTTCAATTTCTGT
65 CAAGTCGAGGTATTTTCAATTCCTGT
* *
103085642 TTTTCAATTTCTG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
1 TTTTCAAATTCTGTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCAC
*
103085706 ATG-CTGAGGTATTTTCAATTCCTGT
66 AAGTC-GAGGTATTTTCAATTCCTGT
103085731 TTTT
1 TTTT
103085735 TAAAAGTCAA
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
88 1 0.01
89 72 0.85
91 12 0.14
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (90 bp):
TTTTCAAATTCTGTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCAC
AAGTCGAGGTATTTTCAATTCCTGT
Found at i:103085765 original size:75 final size:75
Alignment explanation
Indices: 103085642--103085800 Score: 219
Period size: 75 Copynumber: 2.1 Consensus size: 75
103085632 CAATTTCTGT
* *** *
103085642 TTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
1 TTTTCAATTCCTGTTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACA
*
103085707 TGCTGAGGTA
66 CGCTGAGGTA
* *
103085717 TTTTCAATTCCTGTTTTTTAAAAGTCAACTCGTATTGCGAGAAGTGAGTTGAGCCTCAGGTCACA
1 TTTTCAATTCCTGTTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACA
* *
103085782 CACCGAGGTA
66 CGCTGAGGTA
*
103085792 TTTTTAATT
1 TTTTCAATT
103085801 TCTATTTTCC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (75 bp):
TTTTCAATTCCTGTTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACA
CGCTGAGGTA
Done.