Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 320 of 343
Found at i:103329725 original size:22 final size:22
Alignment explanation
Indices: 103329686--103329729 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
103329676 ATGATTATGT
* *
103329686 TAAATTCTTTTTATTACTTATTA
1 TAAATTCTTTCTACTAC-TATTA
103329709 TAAA-TCTTTCTACTACTATTA
1 TAAATTCTTTCTACTACTATTA
103329730 ATTTTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 10 0.53
23 4 0.21
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.55
Consensus pattern (22 bp):
TAAATTCTTTCTACTACTATTA
Found at i:103330596 original size:130 final size:129
Alignment explanation
Indices: 103330436--103330671 Score: 382
Period size: 130 Copynumber: 1.8 Consensus size: 129
103330426 AACAAAAGCG
* *
103330436 ATGTTTGATGTTTAAAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGT
1 ATGTTTGAAGTTTAAAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGT
* *
103330501 TCAAAATGATCAAATATTCCTTTGGAATTTCACTCATGTTTTAAAAAGTCTTTAAAATGAAGGCA
66 TC-AAATAATCAAATATTCCTTTAGAATTTCACTCATGTTTTAAAAAGTCTTTAAAATGAAGGCA
** * *
103330566 ATGTTTGAAGTTTGGAAATTCGGGGCATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGT
1 ATGTTTGAAGTTTAAAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGT
*
103330631 TCAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTT
66 TCAAATAATCAAATATTCCTTTAGAATTTCACTCATGTTTT
103330672 CTAAATTTAA
Statistics
Matches: 97, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
129 36 0.37
130 61 0.63
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (129 bp):
ATGTTTGAAGTTTAAAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGT
TCAAATAATCAAATATTCCTTTAGAATTTCACTCATGTTTTAAAAAGTCTTTAAAATGAAGGCA
Found at i:103351082 original size:21 final size:21
Alignment explanation
Indices: 103351058--103351114 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
103351048 CATTGGTTCA
* *
103351058 AAAGTCGCAACATTAGGCCAC
1 AAAGTTGCAACATTACGCCAC
* *
103351079 AAAGTTGCAACATCCACTCCAC
1 AAAGTTGCAACAT-TACGCCAC
103351101 AAAGTTGCAACATT
1 AAAGTTGCAACATT
103351115 TGAGACAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.39, C:0.28, G:0.14, T:0.19
Consensus pattern (21 bp):
AAAGTTGCAACATTACGCCAC
Found at i:103354188 original size:27 final size:27
Alignment explanation
Indices: 103354150--103354202 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
103354140 TTGAGGTGTT
103354150 TGTGAAGTTTTAAGGTAGATTATTAAG
1 TGTGAAGTTTTAAGGTAGATTATTAAG
103354177 TGTGAAGTTTTAAGGTAGATTATTAA
1 TGTGAAGTTTTAAGGTAGATTATTAA
103354203 ACATAGTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.42
Consensus pattern (27 bp):
TGTGAAGTTTTAAGGTAGATTATTAAG
Found at i:103354829 original size:46 final size:46
Alignment explanation
Indices: 103354741--103354908 Score: 151
Period size: 46 Copynumber: 3.7 Consensus size: 46
103354731 TTTAAACGTG
* * **
103354741 TAAGACCATAGTTGAAAGACACTATGACATTAT-ATCAAAAAAAAAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCATGA-CGGAAAAAAAA
* *
103354787 TAAGACCATAGTTGAAAGACACTATGGCAACATGACGGAAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCATGACGGAAAAA-AAA
* * * * * * *
103354834 TAAGACTATAGTTGAAATACACTGTGGCATCAGGTCGG-GAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCATGACGGAAAAAAAA
* * * *
103354879 TAAAACCATGGCTGAAAGACACCATGGCAT
1 TAAGACCATAGTTGAAAGACACTATGGCAT
103354909 TCTTCGACCA
Statistics
Matches: 98, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
45 25 0.26
46 38 0.39
47 35 0.36
ACGTcount: A:0.45, C:0.15, G:0.19, T:0.20
Consensus pattern (46 bp):
TAAGACCATAGTTGAAAGACACTATGGCATCATGACGGAAAAAAAA
Found at i:103354847 original size:47 final size:46
Alignment explanation
Indices: 103354741--103354862 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 46
103354731 TTTAAACGTG
* **
103354741 TAAGACCATAGTTGAAAGACACTATGACATTATATCAAAAAAAAAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACATATCAAAAAAAAAA
* **
103354787 TAAGACCATAGTTGAAAGACACTATGGCAACATGA-CGGAAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACAT-ATC-AAAAAAAAAA
* * *
103354834 TAAGACTATAGTTGAAATACACTGTGGCA
1 TAAGACCATAGTTGAAAGACACTATGGCA
103354863 TCAGGTCGGG
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 31 0.48
47 34 0.52
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (46 bp):
TAAGACCATAGTTGAAAGACACTATGGCAACATATCAAAAAAAAAA
Found at i:103355030 original size:32 final size:32
Alignment explanation
Indices: 103354994--103355058 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
103354984 TCTTAGTGTG
103354994 ATTATATGTTTCATATGTAAATAAACATGCTA
1 ATTATATGTTTCATATGTAAATAAACATGCTA
103355026 ATTATATGTTTCATATGTAAATAAACATGCTA
1 ATTATATGTTTCATATGTAAATAAACATGCTA
103355058 A
1 A
103355059 CTTGTGAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (32 bp):
ATTATATGTTTCATATGTAAATAAACATGCTA
Found at i:103362143 original size:45 final size:45
Alignment explanation
Indices: 103362094--103362185 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
103362084 TAATAGGAAT
103362094 GGGTACAGGTAAAATTTTGTCATAGTCTAAAATGGAATTATCAAA
1 GGGTACAGGTAAAATTTTGTCATAGTCTAAAATGGAATTATCAAA
103362139 GGGTACAGGTAAAATTTTGTCATAGTCTAAAATGGAATTATCAAA
1 GGGTACAGGTAAAATTTTGTCATAGTCTAAAATGGAATTATCAAA
103362184 GG
1 GG
103362186 CCCACTTCAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (45 bp):
GGGTACAGGTAAAATTTTGTCATAGTCTAAAATGGAATTATCAAA
Found at i:103365977 original size:17 final size:16
Alignment explanation
Indices: 103365935--103365979 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
103365925 TGTTGACCAG
103365935 TTAATTAAAAAGATAA
1 TTAATTAAAAAGATAA
*
103365951 TTAATATAAATAGATTAA
1 TTAAT-TAAAAAGA-TAA
*
103365969 TTACTTAAAAA
1 TTAATTAAAAA
103365980 AAAGAGCCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 5 0.21
17 12 0.50
18 7 0.29
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (16 bp):
TTAATTAAAAAGATAA
Found at i:103371548 original size:2 final size:2
Alignment explanation
Indices: 103371541--103371569 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
103371531 GAGCAAAGAT
103371541 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103371570 TGCACAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:103381654 original size:32 final size:32
Alignment explanation
Indices: 103381618--103381712 Score: 100
Period size: 32 Copynumber: 3.2 Consensus size: 32
103381608 TAAAATTATA
103381618 ATATATTATTATTTAAATAATATCAATAATTT
1 ATATATTATTATTTAAATAATATCAATAATTT
* *
103381650 ATATATTGTAATCTT-AA-AAT-T--AT-A---
1 ATATATTATTAT-TTAAATAATATCAATAATTT
103381674 ATATATTATTATTTAAATAATATCAATAATTT
1 ATATATTATTATTTAAATAATATCAATAATTT
103381706 ATATATT
1 ATATATT
103381713 TAAATATTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 20
0.67 0.05 0.27
Matches are distributed among these distances:
23 2 0.04
24 12 0.24
25 3 0.06
26 1 0.02
27 1 0.02
28 4 0.08
29 1 0.02
30 1 0.02
31 3 0.06
32 19 0.39
33 2 0.04
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (32 bp):
ATATATTATTATTTAAATAATATCAATAATTT
Found at i:103381685 original size:56 final size:56
Alignment explanation
Indices: 103381599--103381712 Score: 228
Period size: 56 Copynumber: 2.0 Consensus size: 56
103381589 CCACTATTTT
103381599 TTGTAATCTTAAAATTATAATATATTATTATTTAAATAATATCAATAATTTATATA
1 TTGTAATCTTAAAATTATAATATATTATTATTTAAATAATATCAATAATTTATATA
103381655 TTGTAATCTTAAAATTATAATATATTATTATTTAAATAATATCAATAATTTATATA
1 TTGTAATCTTAAAATTATAATATATTATTATTTAAATAATATCAATAATTTATATA
103381711 TT
1 TT
103381713 TAAATATTTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.49
Consensus pattern (56 bp):
TTGTAATCTTAAAATTATAATATATTATTATTTAAATAATATCAATAATTTATATA
Found at i:103381716 original size:26 final size:26
Alignment explanation
Indices: 103381623--103381718 Score: 97
Period size: 26 Copynumber: 3.6 Consensus size: 26
103381613 TTATAATATA
103381623 TTAT-TATTTAAATAATATCAATAAT
1 TTATATATTTAAATAATATCAATAAT
* * *
103381648 TTATATATTGTAATCTTAAAAT-TATAAT
1 TTATATATT-TAA--ATAATATCAATAAT
*
103381676 ATATTATTATTTAAATAATATCAATAAT
1 TTA-TA-TATTTAAATAATATCAATAAT
103381704 TTATATATTTAAATA
1 TTATATATTTAAATA
103381719 TTTAAAATAC
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
25 4 0.07
26 14 0.25
27 10 0.18
28 14 0.25
29 10 0.18
30 4 0.07
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (26 bp):
TTATATATTTAAATAATATCAATAAT
Found at i:103388384 original size:45 final size:45
Alignment explanation
Indices: 103388298--103388406 Score: 148
Period size: 45 Copynumber: 2.4 Consensus size: 45
103388288 ACGGTAGCAG
* * * *
103388298 AACAATAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTGT
1 AACAGTAACGGTAACAGTATTCAACACACAAAATGCTGAATCGGT
* *
103388343 AACAGTAACGGTAATAGTATTCGACACACAAAATG-TCGAATCGGT
1 AACAGTAACGGTAACAGTATTCAACACACAAAATGCT-GAATCGGT
103388388 AACAGTAACGGTAACAGTA
1 AACAGTAACGGTAACAGTA
103388407 ACAGTAGTCG
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 1 0.02
45 55 0.98
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.21
Consensus pattern (45 bp):
AACAGTAACGGTAACAGTATTCAACACACAAAATGCTGAATCGGT
Found at i:103388401 original size:12 final size:12
Alignment explanation
Indices: 103388384--103388408 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103388374 AATGTCGAAT
103388384 CGGTAACAGTAA
1 CGGTAACAGTAA
103388396 CGGTAACAGTAA
1 CGGTAACAGTAA
103388408 C
1 C
103388409 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:103388662 original size:40 final size:40
Alignment explanation
Indices: 103388613--103388698 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
103388603 ATTCATTTCA
* * **
103388613 TCAGAAATTTTACAGTTCAATGCAGTATACGTAACAATAT
1 TCAGTAATTTCACAGTTCAATGCAGTATACAAAACAATAT
* * * *
103388653 TCAGTAATTTCACAGTTTAATTCGGTATTCAAAACAATAT
1 TCAGTAATTTCACAGTTCAATGCAGTATACAAAACAATAT
103388693 TCAGTA
1 TCAGTA
103388699 TCCCATAACT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (40 bp):
TCAGTAATTTCACAGTTCAATGCAGTATACAAAACAATAT
Found at i:103389431 original size:17 final size:16
Alignment explanation
Indices: 103389399--103389440 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 16
103389389 ATCTCTAGTT
103389399 TTTCCTTTTTCTTTTC
1 TTTCCTTTTTCTTTTC
103389415 TTTCC--TTT-TTTTC
1 TTTCCTTTTTCTTTTC
103389428 TTTCTCTTTTTCT
1 TTTC-CTTTTTCT
103389441 CCCCTGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
13 9 0.41
14 4 0.18
16 8 0.36
17 1 0.05
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTCCTTTTTCTTTTC
Found at i:103389450 original size:25 final size:25
Alignment explanation
Indices: 103389396--103389450 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
103389386 CAAATCTCTA
* **
103389396 GTTTTTCCTTTTTCTTTTCTTTCCT
1 GTTTTTCCTTTCTCTTTTCTCCCCT
*
103389421 -TTTTTTCTTTCTCTTTTTCTCCCCT
1 GTTTTTCCTTTCTC-TTTTCTCCCCT
103389446 GTTTT
1 GTTTT
103389451 CGAATGCTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
24 11 0.46
25 9 0.38
26 4 0.17
ACGTcount: A:0.00, C:0.25, G:0.04, T:0.71
Consensus pattern (25 bp):
GTTTTTCCTTTCTCTTTTCTCCCCT
Found at i:103389863 original size:20 final size:19
Alignment explanation
Indices: 103389836--103389877 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
103389826 ATATAAAACC
103389836 ATAACAATTA-ATAATTATA
1 ATAACAATTATATAA-TATA
103389855 ATAATCAATTATATAATATA
1 ATAA-CAATTATATAATATA
103389875 ATA
1 ATA
103389878 TATATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 13 0.62
21 4 0.19
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
ATAACAATTATATAATATA
Found at i:103390457 original size:37 final size:37
Alignment explanation
Indices: 103390335--103390471 Score: 166
Period size: 37 Copynumber: 3.7 Consensus size: 37
103390325 TATATCAAAC
*
103390335 CAAATCTTATTGTTATACTGAATGAAGCTCAATCGAG
1 CAAATCTTATTGTTATACTGAATGAAGCTCAATTGAG
* ** * *
103390372 CAAATCGTACCGTTATCCTGAATGAAGCTCAACTGAG
1 CAAATCTTATTGTTATACTGAATGAAGCTCAATTGAG
* * *
103390409 CAAATCTTATTGTTATACTGAATGATGTTCAATTAAG
1 CAAATCTTATTGTTATACTGAATGAAGCTCAATTGAG
* * *
103390446 CAAATCCTATTGTTATATTGAGTGAA
1 CAAATCTTATTGTTATACTGAATGAA
103390472 ACTTGAATGA
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (37 bp):
CAAATCTTATTGTTATACTGAATGAAGCTCAATTGAG
Found at i:103392880 original size:15 final size:16
Alignment explanation
Indices: 103392854--103392885 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
103392844 GTAGTGGCAG
103392854 AAACATGTTAGTTTAA
1 AAACATGTTAGTTTAA
103392870 AAACA-GTTAGTTTAA
1 AAACATGTTAGTTTAA
103392885 A
1 A
103392886 CTTTTACTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.34
Consensus pattern (16 bp):
AAACATGTTAGTTTAA
Found at i:103393374 original size:15 final size:15
Alignment explanation
Indices: 103393337--103393365 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
103393327 CTTTCCTATC
103393337 TAATAATAATAATTG
1 TAATAATAATAATTG
103393352 TAATAATAATAATT
1 TAATAATAATAATT
103393366 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTG
Found at i:103394801 original size:16 final size:17
Alignment explanation
Indices: 103394780--103394812 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
103394770 CACATTGAAG
103394780 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
103394796 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
103394813 CTTCTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:103395608 original size:28 final size:27
Alignment explanation
Indices: 103395565--103395670 Score: 76
Period size: 28 Copynumber: 3.7 Consensus size: 27
103395555 GAAATCAGTG
103395565 TTAA-CTGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCC-TAGCCCATATCAATA
103395592 TTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTA
1 TTAATCTGGGCC-TAG--CC---CA-TATCA-A-TA
*
103395628 -T-AT-TGGGCCTAGCCCATATCAGTA
1 TTAATCTGGGCCTAGCCCATATCAATA
103395652 TTAATCTGGGCCGTAGCCC
1 TTAATCTGGGCC-TAGCCC
103395671 TATTACAAGT
Statistics
Matches: 64, Mismatches: 2, Indels: 25
0.70 0.02 0.27
Matches are distributed among these distances:
24 2 0.03
25 1 0.02
26 7 0.11
27 12 0.19
28 16 0.25
30 4 0.06
32 3 0.05
33 8 0.12
34 7 0.11
35 2 0.03
36 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAATA
Found at i:103395663 original size:27 final size:28
Alignment explanation
Indices: 103395558--103395670 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 28
103395548 CTATTCAGAA
* *
103395558 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCCATAGCCCAT
*
103395585 ATCAATATTAATCTGGGCCATAGCCCCTTACAGT
1 ATCAGTATTAATCTGGGCCATAG--CC---CA-T
*
103395619 ATCAG-AGTATAT-TGGGCC-TAGCCCAT
1 ATCAGTATTA-ATCTGGGCCATAGCCCAT
*
103395645 ATCAGTATTAATCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCCATAGCCC
103395671 TATTACAAGT
Statistics
Matches: 69, Mismatches: 6, Indels: 21
0.72 0.06 0.22
Matches are distributed among these distances:
26 8 0.12
27 20 0.29
28 16 0.23
30 4 0.06
32 3 0.04
33 11 0.16
34 7 0.10
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (28 bp):
ATCAGTATTAATCTGGGCCATAGCCCAT
Found at i:103395690 original size:60 final size:60
Alignment explanation
Indices: 103395570--103395694 Score: 166
Period size: 60 Copynumber: 2.1 Consensus size: 60
103395560 CAGTGTTAAC
*
103395570 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCATTACAGTA-CAGAGTATAT
* *
103395631 TGGGCC-TAGCCCATATCAGTATTAATCTGGGCCGTAGCCCTATTACAAGT-CA-AGATATAT
1 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TATAT
103395691 TGGG
1 TGGG
103395695 TCTTGCTCAT
Statistics
Matches: 58, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
59 2 0.03
60 43 0.74
61 10 0.17
62 3 0.05
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (60 bp):
TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCATTACAGTACAGAGTATAT
Found at i:103396345 original size:8 final size:8
Alignment explanation
Indices: 103396332--103396363 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
103396322 TCACAAATGC
103396332 CGGCTTTT
1 CGGCTTTT
103396340 CGGCTTTT
1 CGGCTTTT
*
103396348 CAGCTTTT
1 CGGCTTTT
103396356 CGGCTTTT
1 CGGCTTTT
103396364 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.22, T:0.50
Consensus pattern (8 bp):
CGGCTTTT
Found at i:103397908 original size:3 final size:3
Alignment explanation
Indices: 103397902--103397935 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
103397892 CTTTCCTATC
* *
103397902 TAA TAA TAA TAA TAA TAA TTA TAA TTA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
103397936 TTTATAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:103400691 original size:13 final size:14
Alignment explanation
Indices: 103400675--103400716 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
103400665 TTTTAATTTT
103400675 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
103400688 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
103400703 ATTTTAAATAATAT
1 ATTTT-AATAATAT
103400717 TCTTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:103400701 original size:16 final size:16
Alignment explanation
Indices: 103400679--103400715 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
103400669 AATTTTATTT
103400679 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
103400696 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
103400711 TAATA
1 TAATA
103400716 TTCTTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:103400798 original size:15 final size:15
Alignment explanation
Indices: 103400747--103400798 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
103400737 ATTCAATGTT
*
103400747 AATATGTTAATAATA
1 AATATATTAATAATA
*
103400762 AATATTTATTACAATTATA
1 AATA--TATT--AATAATA
103400781 AATATATTAATAATA
1 AATATATTAATAATA
103400796 AAT
1 AAT
103400799 GTTTTGTAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 13 0.43
17 7 0.23
19 10 0.33
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (15 bp):
AATATATTAATAATA
Found at i:103405462 original size:22 final size:21
Alignment explanation
Indices: 103405432--103405497 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
103405422 TACAAATTAA
103405432 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
103405454 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
103405475 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
103405494 ATCT
1 ATCT
103405498 AAGATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:103405484 original size:19 final size:19
Alignment explanation
Indices: 103405449--103405510 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
103405439 AGATTACAAG
103405449 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
103405470 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
103405489 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
103405508 ATC
1 ATC
103405511 CTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
20 1 0.02
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:103408247 original size:16 final size:16
Alignment explanation
Indices: 103408226--103408257 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
103408216 GCCCAATAAC
*
103408226 CTAAACTACCAGCCCA
1 CTAAACTAACAGCCCA
103408242 CTAAACTAACAGCCCA
1 CTAAACTAACAGCCCA
103408258 TTACACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.41, G:0.06, T:0.12
Consensus pattern (16 bp):
CTAAACTAACAGCCCA
Found at i:103409430 original size:21 final size:21
Alignment explanation
Indices: 103409406--103409455 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
103409396 TATATTTATA
103409406 ATTA-TATTATTTATTTTCACT
1 ATTATTATTA-TTATTTTCACT
103409427 ATTATTATTATTATTTTCA-T
1 ATTATTATTATTATTTTCACT
103409447 CATTATTAT
1 -ATTATTAT
103409456 ACATATATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 1 0.04
21 21 0.78
22 5 0.19
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTATTATTATTATTTTCACT
Found at i:103421059 original size:45 final size:41
Alignment explanation
Indices: 103420965--103421072 Score: 119
Period size: 41 Copynumber: 2.6 Consensus size: 41
103420955 TTATGCTTAA
*
103420965 GATGAAAACCCGAAAAGGGCATCTTAAAAAAAAAAGATCAG
1 GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAAGATCAG
* * * *
103421006 GACGAAAACCCGAAAAGGGCGTCTTGATTAGTACAAAAAGATTAG
1 GATGAAAACCCGAAAAGGGCGTCTT-A--A-AAAAAAAAGATCAG
*
103421051 GATGAAAACCCG-AGAGGGCGTC
1 GATGAAAACCCGAAAAGGGCGTC
103421073 CTAATGAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
41 23 0.41
42 1 0.02
44 10 0.18
45 22 0.39
ACGTcount: A:0.44, C:0.17, G:0.25, T:0.14
Consensus pattern (41 bp):
GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAAGATCAG
Found at i:103422304 original size:148 final size:148
Alignment explanation
Indices: 103422018--103422363 Score: 459
Period size: 148 Copynumber: 2.3 Consensus size: 148
103422008 TAAGCCTTTT
* * *
103422018 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
103422083 TAATTTTAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
66 TAATTTTAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
103422148 ACACGCTGAGGTAATTTC
131 ACACGCTGAGGTAATTTC
* ** *
103422166 AATTTCTG-TTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGTTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
** * **
103422230 GT-ATTTTCAATTTCT-TT-TTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-
65 GTAATTTT-AATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* *
103422291 GGTTCACATGCTGAGGTATTTTC
129 GG---ACACGCTGAGGTAATTTC
*
103422314 AATTTCTGTTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AATTTCTG-TTTTT-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
103422364 TTCAGATTAC
Statistics
Matches: 172, Mismatches: 18, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
145 2 0.01
146 39 0.23
147 16 0.09
148 80 0.47
150 31 0.18
151 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.35
Consensus pattern (148 bp):
AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTTAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
ACACGCTGAGGTAATTTC
Found at i:103422388 original size:76 final size:74
Alignment explanation
Indices: 103422032--103422368 Score: 432
Period size: 76 Copynumber: 4.5 Consensus size: 74
103422022 TTTGTTTTTC
*
103422032 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTT-AATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTCAATTTC
*
103422096 TGTTGTTAAAAA
65 TGTT-TT-TAAA
** *
103422108 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
103422173 G-TTTT-CA
66 GTTTTTAAA
* * ** * *
103422180 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
103422245 -TTTTTCAAA
66 GTTTTT-AAA
* *
103422254 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
*
103422318 TCTGTTTTTTAA
63 TCTGTTTTTAAA
*
103422330 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
103422369 ATTACACACT
Statistics
Matches: 231, Mismatches: 21, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
72 65 0.28
73 1 0.00
74 37 0.16
75 5 0.02
76 117 0.51
77 6 0.03
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTTAAA
Found at i:103422442 original size:57 final size:57
Alignment explanation
Indices: 103422334--103422445 Score: 156
Period size: 57 Copynumber: 2.0 Consensus size: 57
103422324 TTTTAAAAAA
* *
103422334 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGTGGTATTTTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATTACACACTGAGGTATTTTTT
* *
103422391 TCAATTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTT-CACATGCTGAGGTATTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATTACACA--CTGAGGTATTTT
103422446 CAATTTCTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
55 4 0.08
56 3 0.06
57 42 0.86
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (57 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATTACACACTGAGGTATTTTTT
Found at i:103422535 original size:134 final size:132
Alignment explanation
Indices: 103422265--103422758 Score: 609
Period size: 134 Copynumber: 3.8 Consensus size: 132
103422255 AAATCAACTT
103422265 ATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTGTTTTTTAA
1 ATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTG-TTTTTAA
103422330 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGTGGTATTTTTTTCAA
65 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGTGGTATTTTTTTCAA
103422395 TTC
130 TTC
103422398 ATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTGTTTTTAAA
1 ATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTGTTTTT--A
103422463 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGTGGTATTTTTTTCA
64 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGTGGTATTTTTTTCA
103422528 ATTC
129 ATTC
* * * * *
103422532 ATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGATGAGGTAATTTCAATTTCTGTTTGTCA
1 ATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTTTTTAA
* * * * * * ****
103422594 AGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTA-ATTTC-TACT-T--T-TTCAAAAT
65 AAAATCAACTCATATTGCGAGAGGTGAGTTG-AGC-TTCAGATTACACACTGTGGTATT-TTTTT
**
103422653 CAGCTC
127 CAATTC
* ** *
103422659 ATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACA--CTGAGGTATTTTCAATTTTTGTGTTTT--
1 ATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTGT-TTTTAA
** *
103422720 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
65 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
103422759 GACACACGCC
Statistics
Matches: 321, Mismatches: 29, Indels: 30
0.84 0.08 0.08
Matches are distributed among these distances:
124 2 0.01
125 2 0.01
126 31 0.10
127 50 0.16
128 3 0.01
129 4 0.01
130 33 0.10
131 6 0.02
132 35 0.11
133 57 0.18
134 96 0.30
135 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (132 bp):
ATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTGTTTTTAAA
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGTGGTATTTTTTTCAAT
TC
Found at i:103423094 original size:73 final size:72
Alignment explanation
Indices: 103422905--103423155 Score: 369
Period size: 73 Copynumber: 3.4 Consensus size: 72
103422895 TGAAAGAATA
* *
103422905 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTATGTTTTC
1 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC
103422970 AAAATTC
66 AAAATTC
* * * *
103422977 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTATTTTTAATTTCTACTTTT
1 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT-GTTTT
103423042 CAAAATTC
65 CAAAATTC
** *
103423050 AACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
1 AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC
*
103423115 AAAAAAATC
66 --AAAATTC
103423124 AACTCATATTGCGA-AAAGTGAGTTGAGCCTCA
1 AACTCATATTGCGAGAAA-TGAGTTGAGCCTCA
103423156 GTTCACATGT
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
72 59 0.37
73 68 0.43
74 33 0.21
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (72 bp):
AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC
AAAATTC
Found at i:103423894 original size:16 final size:16
Alignment explanation
Indices: 103423873--103423904 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
103423863 GCCCAATAAC
*
103423873 CTAAACTACCAGCCCA
1 CTAAACTAACAGCCCA
103423889 CTAAACTAACAGCCCA
1 CTAAACTAACAGCCCA
103423905 TTACACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.41, G:0.06, T:0.12
Consensus pattern (16 bp):
CTAAACTAACAGCCCA
Found at i:103425050 original size:3 final size:3
Alignment explanation
Indices: 103425042--103425099 Score: 50
Period size: 3 Copynumber: 19.3 Consensus size: 3
103425032 ACTATTATAT
*
103425042 TTA TTA TTA -TA TTA TTTA TT- TTCA CTA TTA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA -TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA
*
103425086 TTCA TCA TTA TTA T
1 TT-A TTA TTA TTA T
103425100 ACATATATGT
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
2 6 0.13
3 34 0.76
4 5 0.11
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:103425070 original size:24 final size:22
Alignment explanation
Indices: 103425043--103425100 Score: 80
Period size: 24 Copynumber: 2.5 Consensus size: 22
103425033 CTATTATATT
103425043 TATTATTATATTATTTATTTTCA
1 TATTATTATATTA-TTATTTTCA
103425066 CTATTATTATTATTATTATTTTCA
1 -TATTATTA-TATTATTATTTTCA
103425090 TCATTATTATA
1 T-ATTATTATA
103425101 CATATATGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 3 0.09
24 24 0.75
25 5 0.16
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (22 bp):
TATTATTATATTATTATTTTCA
Found at i:103426410 original size:22 final size:23
Alignment explanation
Indices: 103426363--103426407 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
103426353 GGGTCAGTCA
*
103426363 AAAAAAGGTATGTTAATTAATCC
1 AAAAAAGGTATGCTAATTAATCC
103426386 AAAAAAGGTATGCTAATTAATC
1 AAAAAAGGTATGCTAATTAATC
103426408 AAAGGTCCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.49, C:0.09, G:0.13, T:0.29
Consensus pattern (23 bp):
AAAAAAGGTATGCTAATTAATCC
Found at i:103430805 original size:21 final size:20
Alignment explanation
Indices: 103430767--103430805 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
103430757 ATTAGTATTA
* *
103430767 TAGGATAAAATTATTACTAT
1 TAGGAAAAAAATATTACTAT
103430787 TAGGAAAAAAATATATACT
1 TAGGAAAAAAATAT-TACT
103430806 GTATATATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.33
Consensus pattern (20 bp):
TAGGAAAAAAATATTACTAT
Found at i:103432338 original size:8 final size:8
Alignment explanation
Indices: 103432325--103432361 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
103432315 CTAGATCGGC
103432325 AAAAGCCG
1 AAAAGCCG
*
103432333 AAAAGCAG
1 AAAAGCCG
103432341 AAAAGCCG
1 AAAAGCCG
103432349 AAAAGCCG
1 AAAAGCCG
103432357 AAAAG
1 AAAAG
103432362 TTGGCATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.57, C:0.19, G:0.24, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:103432663 original size:26 final size:26
Alignment explanation
Indices: 103432612--103432672 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
103432602 TTTATTAAAC
* * *
103432612 TACCCCTAAGTATGAAAATTATCGTTT
1 TACCCCTAAG-ATGAAAATGACCGTTA
103432639 TACCCCTAAG-TGCAAAATGACCGTTA
1 TACCCCTAAGATG-AAAATGACCGTTA
103432665 TACCCCTA
1 TACCCCTA
103432673 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 2 0.07
26 18 0.60
27 10 0.33
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.30
Consensus pattern (26 bp):
TACCCCTAAGATGAAAATGACCGTTA
Found at i:103436360 original size:9 final size:9
Alignment explanation
Indices: 103436346--103436396 Score: 66
Period size: 9 Copynumber: 5.7 Consensus size: 9
103436336 AAAATCAACT
*
103436346 GAATTAATC
1 GAATTAACC
103436355 GAATTAACC
1 GAATTAACC
**
103436364 GAATTAATT
1 GAATTAACC
*
103436373 GAATTACCC
1 GAATTAACC
103436382 GAATTAACC
1 GAATTAACC
103436391 GAATTA
1 GAATTA
103436397 TTTGTATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.43, C:0.16, G:0.12, T:0.29
Consensus pattern (9 bp):
GAATTAACC
Found at i:103436369 original size:18 final size:18
Alignment explanation
Indices: 103436346--103436396 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
103436336 AAAATCAACT
103436346 GAATTAATCGAATTAACC
1 GAATTAATCGAATTAACC
* *
103436364 GAATTAATTGAATTACCC
1 GAATTAATCGAATTAACC
*
103436382 GAATTAACCGAATTA
1 GAATTAATCGAATTA
103436397 TTTGTATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.43, C:0.16, G:0.12, T:0.29
Consensus pattern (18 bp):
GAATTAATCGAATTAACC
Found at i:103436375 original size:27 final size:27
Alignment explanation
Indices: 103436345--103436396 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
103436335 TAAAATCAAC
*
103436345 TGAATTAATCGAATTAACCGAATTAAT
1 TGAATTAACCGAATTAACCGAATTAAT
*
103436372 TGAATTACCCGAATTAACCGAATTA
1 TGAATTAACCGAATTAACCGAATTA
103436397 TTTGTATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (27 bp):
TGAATTAACCGAATTAACCGAATTAAT
Found at i:103436427 original size:6 final size:6
Alignment explanation
Indices: 103436416--103436462 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
103436406 AATTATATGT
* *
103436416 TTTTTA TTTTTA TTTTTA GTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
103436463 ATTAAATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
6 27 0.77
7 7 0.20
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:103436503 original size:13 final size:13
Alignment explanation
Indices: 103436487--103436530 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
103436477 AATTTTTATG
103436487 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
103436500 ATTGGGTTGGG--
1 ATTGGGTTGGGTA
103436511 -TTGGGTTGGGTA
1 ATTGGGTTGGGTA
*
103436523 CTTGGGTT
1 ATTGGGTT
103436531 AATATATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 10 0.36
13 18 0.64
ACGTcount: A:0.09, C:0.02, G:0.48, T:0.41
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:103438711 original size:18 final size:18
Alignment explanation
Indices: 103438672--103438707 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
103438662 CATATGGTCT
*
103438672 GCCCGTGTGGACCCACAC
1 GCCCGTCTGGACCCACAC
103438690 GCCCGTCTGG-CCCACAC
1 GCCCGTCTGGACCCACAC
103438707 G
1 G
103438708 GCCCAAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.14, C:0.47, G:0.28, T:0.11
Consensus pattern (18 bp):
GCCCGTCTGGACCCACAC
Found at i:103446060 original size:29 final size:29
Alignment explanation
Indices: 103446006--103446078 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
103445996 ATTTTTAACT
*
103446006 ATTAACCGAAC-CAAATTTTTTCAAAAAA
1 ATTAACCGAACTGAAATTTTTTCAAAAAA
103446034 ATTAACCGAACTGAAATTTTTTCAAAAAA
1 ATTAACCGAACTGAAATTTTTTCAAAAAA
103446063 ATTAACCGAACTGAAA
1 ATTAACCGAACTGAAA
103446079 ATTATATGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
28 11 0.26
29 32 0.74
ACGTcount: A:0.49, C:0.16, G:0.07, T:0.27
Consensus pattern (29 bp):
ATTAACCGAACTGAAATTTTTTCAAAAAA
Found at i:103446131 original size:9 final size:9
Alignment explanation
Indices: 103446117--103446157 Score: 66
Period size: 9 Copynumber: 4.6 Consensus size: 9
103446107 ATAAGTATAA
103446117 AATTAACCG
1 AATTAACCG
103446126 AATTAACCG
1 AATTAACCG
103446135 AATT-ACCTG
1 AATTAACC-G
103446144 AATTAACCG
1 AATTAACCG
103446153 AATTA
1 AATTA
103446158 TTTCTATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 3 0.10
9 24 0.80
10 3 0.10
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:103446191 original size:5 final size:6
Alignment explanation
Indices: 103446176--103446216 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
103446166 AAATTATATG
*
103446176 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
103446217 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:103446279 original size:18 final size:18
Alignment explanation
Indices: 103446245--103446279 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
103446235 TTTATGATTC
*
103446245 GGTTGGGTAATTTGGTTG
1 GGTTGGGTAATTGGGTTG
*
103446263 GGTTGGGTACTTGGGTT
1 GGTTGGGTAATTGGGTT
103446280 AATATATATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.03, G:0.46, T:0.43
Consensus pattern (18 bp):
GGTTGGGTAATTGGGTTG
Found at i:103447908 original size:17 final size:18
Alignment explanation
Indices: 103447876--103447909 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
103447866 AGAAGTTGCG
103447876 ATAATTACATATTTAAAA
1 ATAATTACATATTTAAAA
*
103447894 ATAATTAGA-ATTTAAA
1 ATAATTACATATTTAAA
103447910 TTACAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (18 bp):
ATAATTACATATTTAAAA
Found at i:103454097 original size:15 final size:15
Alignment explanation
Indices: 103454054--103454099 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
103454044 GAAAAAACTG
*
103454054 GAAAGATGGAAAATT
1 GAAAGATGGAAAATA
* *
103454069 GAAGGATAGAAAAATA
1 GAAAGAT-GGAAAATA
103454085 GAAAGATGGAAAATA
1 GAAAGATGGAAAATA
103454100 TCATTTTTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.59, C:0.00, G:0.26, T:0.15
Consensus pattern (15 bp):
GAAAGATGGAAAATA
Found at i:103457773 original size:25 final size:25
Alignment explanation
Indices: 103457744--103457793 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
103457734 TATGTTCACT
*
103457744 TTAGTACTCATATATTTTTTTGTTC
1 TTAGTACTCATACATTTTTTTGTTC
103457769 TTAGTACTCATACATTTTTTTGTTC
1 TTAGTACTCATACATTTTTTTGTTC
103457794 AATTTGATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.14, G:0.08, T:0.58
Consensus pattern (25 bp):
TTAGTACTCATACATTTTTTTGTTC
Found at i:103458408 original size:17 final size:17
Alignment explanation
Indices: 103458386--103458418 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
103458376 ATATTATCCC
103458386 TAAATATATTCTAAATT
1 TAAATATATTCTAAATT
*
103458403 TAAATATGTTCTAAAT
1 TAAATATATTCTAAAT
103458419 ATTTTAAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (17 bp):
TAAATATATTCTAAATT
Found at i:103458669 original size:17 final size:15
Alignment explanation
Indices: 103458643--103458703 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
103458633 TTGATAAATT
*
103458643 AAAAAATAAAGTGTTA
1 AAAAAATAAA-TATTA
103458659 AAAAGAATAAATATTA
1 AAAA-AATAAATATTA
** * **
103458675 AAAATTTAAGTGCTA
1 AAAAAATAAATATTA
103458690 AAAAAATAAATATT
1 AAAAAATAAATATT
103458704 GAATTTAAGT
Statistics
Matches: 33, Mismatches: 11, Indels: 3
0.70 0.23 0.06
Matches are distributed among these distances:
15 15 0.45
16 12 0.36
17 6 0.18
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (15 bp):
AAAAAATAAATATTA
Found at i:103458698 original size:30 final size:31
Alignment explanation
Indices: 103458640--103458703 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
103458630 TGTTTGATAA
*
103458640 ATTAAAAAATAAAGTGTTAAAAAGAATAAAT
1 ATTAAAAAATAAAGTGCTAAAAAGAATAAAT
* *
103458671 ATTAAAAATTTAAGTGCTAAAAA-AATAAAT
1 ATTAAAAAATAAAGTGCTAAAAAGAATAAAT
103458701 ATT
1 ATT
103458704 GAATTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 10 0.33
31 20 0.67
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.30
Consensus pattern (31 bp):
ATTAAAAAATAAAGTGCTAAAAAGAATAAAT
Found at i:103458719 original size:28 final size:30
Alignment explanation
Indices: 103458651--103458720 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 30
103458641 TTAAAAAATA
*
103458651 AAGTGTTAAAAAGAATAAATATTAAAAATTT
1 AAGTGATAAAAAGAATAAATATT-AAAATTT
* *
103458682 AAGTGCTAAAAA-AATAAATATT-GAATTT
1 AAGTGATAAAAAGAATAAATATTAAAATTT
*
103458710 AAGTTATAAAA
1 AAGTGATAAAA
103458721 TTATTTAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 14 0.40
30 10 0.29
31 11 0.31
ACGTcount: A:0.57, C:0.01, G:0.10, T:0.31
Consensus pattern (30 bp):
AAGTGATAAAAAGAATAAATATTAAAATTT
Found at i:103459035 original size:18 final size:18
Alignment explanation
Indices: 103459002--103459043 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
103458992 TGTGTAAAAA
*
103459002 GGTTAAATTATTTTCAAT
1 GGTTTAATTATTTTCAAT
103459020 GGATTTAATT-TTTTCAAT
1 GG-TTTAATTATTTTCAAT
103459038 GGTTTA
1 GGTTTA
103459044 TCAAACAAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 4 0.18
18 12 0.55
19 6 0.27
ACGTcount: A:0.29, C:0.05, G:0.14, T:0.52
Consensus pattern (18 bp):
GGTTTAATTATTTTCAAT
Found at i:103459407 original size:31 final size:30
Alignment explanation
Indices: 103459320--103459409 Score: 87
Period size: 31 Copynumber: 3.0 Consensus size: 30
103459310 CTGAGTACCG
* * *
103459320 AATTGAATATTGAATCCAAACTTAGGTACTA
1 AATTGAATATT-AAACCAATCTTAAGTACTA
* *
103459351 AATTGAGATA--AAA-AAATTTTAAGTACTA
1 AATTGA-ATATTAAACCAATCTTAAGTACTA
103459379 AATTGAATATTAAAGCCAATCTTAAGTACTA
1 AATTGAATATTAAA-CCAATCTTAAGTACTA
103459410 TATAGTATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
27 3 0.06
28 17 0.36
29 5 0.11
31 19 0.40
32 3 0.06
ACGTcount: A:0.47, C:0.10, G:0.11, T:0.32
Consensus pattern (30 bp):
AATTGAATATTAAACCAATCTTAAGTACTA
Found at i:103460120 original size:14 final size:16
Alignment explanation
Indices: 103460101--103460132 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
103460091 AACTTTTAAG
103460101 TGAATA-AAAAAA-AA
1 TGAATAGAAAAAAGAA
103460115 TGAATAGAAAAAAGAA
1 TGAATAGAAAAAAGAA
103460131 TG
1 TG
103460133 GATACACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 6 0.38
16 4 0.25
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (16 bp):
TGAATAGAAAAAAGAA
Found at i:103461332 original size:10 final size:9
Alignment explanation
Indices: 103461298--103461331 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
103461288 CCAAAATGCC
103461298 TTTTTATTG
1 TTTTTATTG
103461307 TTTTTATTG
1 TTTTTATTG
*
103461316 TTTTTAATTT
1 TTTTT-ATTG
103461326 TTTTTA
1 TTTTTA
103461332 ACTGTTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (9 bp):
TTTTTATTG
Found at i:103461339 original size:10 final size:10
Alignment explanation
Indices: 103461298--103461340 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
103461288 CCAAAATGCC
103461298 TTTTT-ATTG
1 TTTTTAATTG
103461307 TTTTT-ATTG
1 TTTTTAATTG
*
103461316 TTTTTAATTT
1 TTTTTAATTG
*
103461326 TTTTTAACTG
1 TTTTTAATTG
103461336 TTTTT
1 TTTTT
103461341 CTATGGTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
9 14 0.47
10 16 0.53
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.77
Consensus pattern (10 bp):
TTTTTAATTG
Found at i:103464457 original size:63 final size:63
Alignment explanation
Indices: 103464275--103464465 Score: 294
Period size: 62 Copynumber: 3.0 Consensus size: 63
103464265 TTTTCAATAT
*
103464275 TTATATCAGTTATAGTTCTGCTGGTAGAGTGCTATCGAAAGAAGTGAATGGGATATCAACAAC
1 TTATATCAGTTATAGTTCTGCTGGTAGAGTGCTATCGAAATAAGTGAATGGGATATCAACAAC
* * * *
103464338 TTATATCAG-TGTAGTTCCGCTGGTAGAGTGCTATCTAAATAAGTGAATGGGCTATCAACAAC
1 TTATATCAGTTATAGTTCTGCTGGTAGAGTGCTATCGAAATAAGTGAATGGGATATCAACAAC
* * * *
103464400 TTATATCAGTTATAATTCTGCTAGTAGAGTGCTATCGAAATAAGTGGATGGAATATCAACAAC
1 TTATATCAGTTATAGTTCTGCTGGTAGAGTGCTATCGAAATAAGTGAATGGGATATCAACAAC
103464463 TTA
1 TTA
103464466 GCATGAATTA
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
62 57 0.50
63 57 0.50
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (63 bp):
TTATATCAGTTATAGTTCTGCTGGTAGAGTGCTATCGAAATAAGTGAATGGGATATCAACAAC
Found at i:103468236 original size:17 final size:18
Alignment explanation
Indices: 103468199--103468236 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
103468189 GATTGAGAGT
* *
103468199 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
103468217 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
103468234 GAA
1 GAA
103468237 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:103468249 original size:13 final size:12
Alignment explanation
Indices: 103468218--103468272 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
103468208 TGTGAAACAG
*
103468218 AAAAGAAATTGA
1 AAAAGAAGTTGA
103468230 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
103468242 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
103468254 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
103468266 AAAAGAA
1 AAAAGAA
103468273 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:103476550 original size:91 final size:91
Alignment explanation
Indices: 103476395--103476572 Score: 356
Period size: 91 Copynumber: 2.0 Consensus size: 91
103476385 TCCTAAGTAG
103476395 TTAATTTTTAACGAAATTTCTTATAGAGTAAGTTTCAAGTGGCATGTCAGTATGAGCAGCCAATA
1 TTAATTTTTAACGAAATTTCTTATAGAGTAAGTTTCAAGTGGCATGTCAGTATGAGCAGCCAATA
103476460 ATTACACTCACCTTCTCCGTCGGAGT
66 ATTACACTCACCTTCTCCGTCGGAGT
103476486 TTAATTTTTAACGAAATTTCTTATAGAGTAAGTTTCAAGTGGCATGTCAGTATGAGCAGCCAATA
1 TTAATTTTTAACGAAATTTCTTATAGAGTAAGTTTCAAGTGGCATGTCAGTATGAGCAGCCAATA
103476551 ATTACACTCACCTTCTCCGTCG
66 ATTACACTCACCTTCTCCGTCG
103476573 AAGTGGTCCT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (91 bp):
TTAATTTTTAACGAAATTTCTTATAGAGTAAGTTTCAAGTGGCATGTCAGTATGAGCAGCCAATA
ATTACACTCACCTTCTCCGTCGGAGT
Found at i:103484471 original size:12 final size:11
Alignment explanation
Indices: 103484432--103484480 Score: 50
Period size: 12 Copynumber: 4.6 Consensus size: 11
103484422 CAATTTTTAA
103484432 TTTAATTAA-T
1 TTTAATTAATT
*
103484442 TTAAATT--TT
1 TTTAATTAATT
*
103484451 TTAAATTAATAT
1 TTTAATTAAT-T
103484463 TTTAATTAATT
1 TTTAATTAATT
103484474 TTTAATT
1 TTTAATT
103484481 CAATCAATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
9 8 0.24
10 6 0.18
11 9 0.27
12 10 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTAATTAATT
Found at i:103487402 original size:22 final size:22
Alignment explanation
Indices: 103487373--103487429 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
103487363 GTAAAATGGT
*
103487373 AACAAAACAACAACCTAACAAC
1 AACAAAACAACAACATAACAAC
* **
103487395 AATAAAACAACAACATAACAGG
1 AACAAAACAACAACATAACAAC
103487417 AACAAAACAACAA
1 AACAAAACAACAA
103487430 TGGAAAAAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.67, C:0.25, G:0.04, T:0.05
Consensus pattern (22 bp):
AACAAAACAACAACATAACAAC
Found at i:103487403 original size:11 final size:11
Alignment explanation
Indices: 103487373--103487429 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
103487363 GTAAAATGGT
103487373 AACAAAACAAC
1 AACAAAACAAC
**
103487384 AACCTAACAAC
1 AACAAAACAAC
*
103487395 AATAAAACAAC
1 AACAAAACAAC
* **
103487406 AACATAACAGG
1 AACAAAACAAC
103487417 AACAAAACAAC
1 AACAAAACAAC
103487428 AA
1 AA
103487430 TGGAAAAAGT
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.67, C:0.25, G:0.04, T:0.05
Consensus pattern (11 bp):
AACAAAACAAC
Found at i:103488766 original size:59 final size:59
Alignment explanation
Indices: 103488667--103488779 Score: 140
Period size: 59 Copynumber: 1.9 Consensus size: 59
103488657 ATCTGGTATT
* * *
103488667 TTTTTTCTAATTTAGTATTTAAATTTTTTTTAGCTTAATTTGGTACTTGAGCTTGACGC
1 TTTTTCCTAATTTAGTACTTAAATTTTTTTTAGCTTAATTTGGTACTTAAGCTTGACGC
* * *
103488726 TTTTTCCTAATTT-GATACTTAAA-TTTTTTTGGGTTCAATTTGGTATTTAAGCTT
1 TTTTTCCTAATTTAG-TACTTAAATTTTTTTTAGCTT-AATTTGGTACTTAAGCTT
103488780 TTTTTTAGGT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 11 0.24
59 35 0.76
ACGTcount: A:0.22, C:0.10, G:0.13, T:0.55
Consensus pattern (59 bp):
TTTTTCCTAATTTAGTACTTAAATTTTTTTTAGCTTAATTTGGTACTTAAGCTTGACGC
Found at i:103488775 original size:28 final size:28
Alignment explanation
Indices: 103488734--103488809 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 28
103488724 GCTTTTTCCT
* *
103488734 AATTTGATACTTAAATTTTTTTGGGTTC
1 AATTTGATATTTAAATTTTTTTAGGTTC
* *
103488762 AATTTGGTATTTAAGCTTTTTTTTAGGTTC
1 AATTTGATATTTAA--ATTTTTTTAGGTTC
*
103488792 AATTTGATATCTAAATTT
1 AATTTGATATTTAAATTT
103488810 ATTAAATGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 15 0.38
30 24 0.62
ACGTcount: A:0.26, C:0.07, G:0.13, T:0.54
Consensus pattern (28 bp):
AATTTGATATTTAAATTTTTTTAGGTTC
Found at i:103495514 original size:31 final size:32
Alignment explanation
Indices: 103495456--103495515 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
103495446 TACAGAAGTT
*
103495456 GGGTTTTAGACAAAAACATTTTTTTTGTTGTC
1 GGGTTTTAGACAAAAACATCTTTTTTGTTGTC
103495488 GGGTTTTAGACAAAAAC-TCTTTTTTGTT
1 GGGTTTTAGACAAAAACATCTTTTTTGTT
103495516 TTCGATTGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 10 0.37
32 17 0.63
ACGTcount: A:0.25, C:0.10, G:0.18, T:0.47
Consensus pattern (32 bp):
GGGTTTTAGACAAAAACATCTTTTTTGTTGTC
Found at i:103496934 original size:14 final size:14
Alignment explanation
Indices: 103496911--103496946 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
103496901 AAAATTTGTG
*
103496911 TTCTTGTTTTTTAT
1 TTCTTATTTTTTAT
103496925 TTCTTATTTTTTAT
1 TTCTTATTTTTTAT
103496939 TTCTTATT
1 TTCTTATT
103496947 ACTTTGCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.11, C:0.08, G:0.03, T:0.78
Consensus pattern (14 bp):
TTCTTATTTTTTAT
Found at i:103499153 original size:13 final size:14
Alignment explanation
Indices: 103499137--103499172 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
103499127 CAATCTCATA
103499137 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
103499150 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
103499163 TCTC-ATTTCA
1 TCTCAATTTCA
103499173 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:103499162 original size:18 final size:19
Alignment explanation
Indices: 103499124--103499164 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
103499114 TGGTTCATGT
103499124 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
103499143 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
103499161 TTTC
1 TTTC
103499165 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:103499364 original size:21 final size:21
Alignment explanation
Indices: 103499340--103499392 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
103499330 GACACATAAA
*
103499340 GTGCCTAAAATGACACACGAG
1 GTGCCTGAAATGACACACGAG
* *
103499361 GTGCCTGATACGACACACGAG
1 GTGCCTGAAATGACACACGAG
103499382 GTGCCTGAAAT
1 GTGCCTGAAAT
103499393 ACGATACATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.26, T:0.17
Consensus pattern (21 bp):
GTGCCTGAAATGACACACGAG
Found at i:103499394 original size:23 final size:23
Alignment explanation
Indices: 103499326--103499396 Score: 78
Period size: 21 Copynumber: 3.3 Consensus size: 23
103499316 CCTGATCAGT
** *
103499326 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
*
103499348 A-ATGACACACGAGGTGCCTG--
1 ATACGACACACGAGGTGCCTGAA
103499368 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
103499391 ATACGA
1 ATACGA
103499397 TACATAAAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
20 1 0.03
21 32 0.80
22 1 0.03
23 6 0.15
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:103499724 original size:15 final size:15
Alignment explanation
Indices: 103499699--103499756 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
103499689 TCATATATAT
103499699 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
*
103499715 TATAAATTCAATTAA
1 TATAAATTCAATCAA
* *
103499730 AATAATTTCAATCAA
1 TATAAATTCAATCAA
103499745 TATAAATTCAAT
1 TATAAATTCAAT
103499757 AAAACAGATA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
15 32 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:103499741 original size:30 final size:28
Alignment explanation
Indices: 103499702--103499760 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
103499692 TATATATTAT
103499702 ATAATTCAATCAATATAAATTCAATTAAA
1 ATAATTCAATCAATATAAATTCAA-TAAA
103499731 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAA-TTCAATCAATATAAATTCAATAAA
103499760 A
1 A
103499761 CAGATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (28 bp):
ATAATTCAATCAATATAAATTCAATAAA
Found at i:103499919 original size:2 final size:2
Alignment explanation
Indices: 103499912--103499949 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
103499902 ATATCTCATT
*
103499912 CA CA CA CA CA CA CA CA CA CA CA TA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
103499950 TATATATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (2 bp):
CA
Found at i:103500780 original size:13 final size:13
Alignment explanation
Indices: 103500762--103500789 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
103500752 CCTCCTTTTA
103500762 TTCTTTTGTTTCT
1 TTCTTTTGTTTCT
103500775 TTCTTTTGTTTCT
1 TTCTTTTGTTTCT
103500788 TT
1 TT
103500790 TATATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.14, G:0.07, T:0.79
Consensus pattern (13 bp):
TTCTTTTGTTTCT
Found at i:103508260 original size:30 final size:31
Alignment explanation
Indices: 103508226--103508327 Score: 113
Period size: 30 Copynumber: 3.4 Consensus size: 31
103508216 AAAAAAATAA
*
103508226 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* * *
103508256 AAATTTCATTTTGAACCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
103508286 AAATTTCACTTAGACCCCTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCCTAAACTTTTC-TCT
103508316 AAATTTCATTTT
1 AAATTTCATTTT
103508328 AATCCTAAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 4 0.07
30 55 0.92
31 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.04, T:0.44
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTCT
Found at i:103508837 original size:19 final size:19
Alignment explanation
Indices: 103508815--103508857 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
103508805 AAAATTAATT
103508815 AAAAAAAAACAACACAAAA
1 AAAAAAAAACAACACAAAA
* * * *
103508834 AAAACAAATCAGCCCAAAA
1 AAAAAAAAACAACACAAAA
103508853 AAAAA
1 AAAAA
103508858 CCAAAGCAAA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.77, C:0.19, G:0.02, T:0.02
Consensus pattern (19 bp):
AAAAAAAAACAACACAAAA
Found at i:103508853 original size:31 final size:30
Alignment explanation
Indices: 103508817--103508889 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 30
103508807 AATTAATTAA
*
103508817 AAAAAAACAACACAAA-AAAAACAAATCAGCCC
1 AAAAAAA-AAC-CAAACAAAAA-AAAGCAGCCC
103508849 AAAAAAAAACCAAAGCAAAAAAAAGCAGCCC
1 AAAAAAAAACCAAA-CAAAAAAAAGCAGCCC
103508880 AAAAAGAAAA
1 AAAAA-AAAA
103508890 GGCCCAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
30 4 0.11
31 17 0.46
32 16 0.43
ACGTcount: A:0.71, C:0.21, G:0.07, T:0.01
Consensus pattern (30 bp):
AAAAAAAAACCAAACAAAAAAAAGCAGCCC
Found at i:103508904 original size:14 final size:15
Alignment explanation
Indices: 103508865--103508905 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
103508855 AAACCAAAGC
103508865 AAAAAAAAGCAGCCCA
1 AAAAAAAAG-AGCCCA
103508881 AAAAGAAAAG-GCCCA
1 AAAA-AAAAGAGCCCA
103508896 AAAAAAAAGA
1 AAAAAAAAGA
103508906 AAAAACAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.22
15 9 0.39
16 4 0.17
17 5 0.22
ACGTcount: A:0.68, C:0.17, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAGCCCA
Found at i:103509039 original size:15 final size:15
Alignment explanation
Indices: 103509019--103509111 Score: 114
Period size: 15 Copynumber: 5.9 Consensus size: 15
103509009 CAGGCCAGGA
* *
103509019 AAAAAAGAGAGAAAG
1 AAAAAAGAAAAAAAG
103509034 AAAAAAGAAAAAAAG
1 AAAAAAGAAAAAAAG
*
103509049 AAAGAAGAAAAAAAG
1 AAAAAAGAAAAAAAG
*
103509064 AAAAGAGAAAAAAAGG
1 AAAAAAGAAAAAAA-G
103509080 AAAAAAGGAAAAAAGAAG
1 AAAAAA-G-AAAAA-AAG
103509098 AAAAAAGAAAAAAA
1 AAAAAAGAAAAAAA
103509112 AAGAGTTTCA
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
15 41 0.60
16 11 0.16
17 2 0.03
18 12 0.18
19 2 0.03
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAAG
Found at i:103509045 original size:8 final size:8
Alignment explanation
Indices: 103509017--103509111 Score: 97
Period size: 8 Copynumber: 12.0 Consensus size: 8
103509007 AGCAGGCCAG
103509017 GAAAAAAA
1 GAAAAAAA
* *
103509025 GAGAGAAA
1 GAAAAAAA
103509033 G-AAAAAA
1 GAAAAAAA
103509040 GAAAAAAA
1 GAAAAAAA
*
103509048 G-AAAGAA
1 GAAAAAAA
103509055 GAAAAAAA
1 GAAAAAAA
*
103509063 G-AAAAGA
1 GAAAAAAA
103509070 GAAAAAAA
1 GAAAAAAA
*
103509078 GGAAAAAA
1 GAAAAAAA
*
103509086 GGAAAAAA
1 GAAAAAAA
103509094 GAAGAAAAAA
1 G-A-AAAAAA
103509104 GAAAAAAA
1 GAAAAAAA
103509112 AAGAGTTTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
7 17 0.24
8 47 0.65
9 1 0.01
10 7 0.10
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (8 bp):
GAAAAAAA
Found at i:103509047 original size:23 final size:23
Alignment explanation
Indices: 103509017--103509115 Score: 100
Period size: 23 Copynumber: 4.4 Consensus size: 23
103509007 AGCAGGCCAG
*
103509017 GAAAAAAAGAGAGAAAGAAAAAA
1 GAAAAAAAGAAAGAAAGAAAAAA
103509040 GAAAAAAAGAAAG-AAGAAAAAA
1 GAAAAAAAGAAAGAAAGAAAAAA
* *
103509062 -AGAAAAGAGAAAAAAAGGAAAAAA
1 GA-AAAAAAGAAAGAAA-GAAAAAA
* *
103509086 GGAAAAAAG-AAGAAA-AAAGAA
1 GAAAAAAAGAAAGAAAGAAAAAA
103509107 -AAAAAAAGA
1 GAAAAAAAGA
103509116 GTTTCAATTC
Statistics
Matches: 63, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
20 7 0.11
21 6 0.10
22 18 0.29
23 19 0.30
24 13 0.21
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (23 bp):
GAAAAAAAGAAAGAAAGAAAAAA
Found at i:103509739 original size:15 final size:16
Alignment explanation
Indices: 103509719--103509778 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 16
103509709 AGTGTCTTCT
*
103509719 AAAAATTT-GTGTTTC
1 AAAAATTTCGTATTTC
103509734 AAAAATTTTCGTATTTC
1 AAAAA-TTTCGTATTTC
*
103509751 AAAAATCCTCTTGT-TTTC
1 AAAAAT--T-TCGTATTTC
103509769 AAAAATTTCG
1 AAAAATTTCG
103509779 GTGTTTTGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
15 7 0.19
16 5 0.14
17 11 0.30
18 11 0.30
19 3 0.08
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.43
Consensus pattern (16 bp):
AAAAATTTCGTATTTC
Found at i:103509783 original size:18 final size:18
Alignment explanation
Indices: 103509762--103509808 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
103509752 AAAATCCTCT
*
103509762 TGTTTTCAAAAATTTCGG
1 TGTTTTCAAAAATTTCGA
* **
103509780 TGTTTT-GAAAATTTTTA
1 TGTTTTCAAAAATTTCGA
103509797 TGTTTTCAAAAA
1 TGTTTTCAAAAA
103509809 AAAAATATCG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.49
Consensus pattern (18 bp):
TGTTTTCAAAAATTTCGA
Found at i:103521729 original size:118 final size:121
Alignment explanation
Indices: 103521515--103521737 Score: 283
Period size: 118 Copynumber: 1.9 Consensus size: 121
103521505 AATTTTTAAA
* ** * *
103521515 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
*** ** *
103521580 GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTGTTTTTC
66 GTAAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTGTTTTTC
**
103521636 AAAATCAACTCAT-TTGCGAGAAATGAGTTGAGCCTCAAGACAC-TTGAGGTATTTTTAAATTT-
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT-AATTTA
*
103521698 T-TAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
65 TGTAAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCT
103521738 CGGGGCACGC
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
118 32 0.37
119 12 0.14
120 30 0.34
121 13 0.15
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (121 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTAAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTGTTTTTC
Found at i:103522089 original size:189 final size:190
Alignment explanation
Indices: 103521447--103522240 Score: 1399
Period size: 188 Copynumber: 4.2 Consensus size: 190
103521437 GCTTTCCAAG
103521447 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
103521511 TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGT
66 TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGT
103521576 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAA-TTTTGTTTTTC
131 TTATGTTTTAAATTGACTCA-ATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
103521636 AAAATCAACTCAT-TTGCGAGAAATGAGTTGAGCCTCAAGACAC-TTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
103521699 T-AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGT
66 TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGT
103521763 TTATGTTTTAAATTGACTC-ATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
131 TTATGTTTTAAATTGACTCAATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
103521822 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTT
*
103521887 TTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTA-TTTTAG
65 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
103521951 TTTATGTTTTAAATTGACTC-ATTGCGAGAGGTGAGTTAAGCC-TTTAATTTTTGTTTTTC
130 TTTATGTTTTAAATTGACTCAATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
103522010 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
* * *
103522075 TAAAAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACACCGATGTATTTTTA
66 T-AAAAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
*
103522140 GTTTATATTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
129 GTTTATGTTTTAAATTGACTCA-ATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* **
103522203 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC
1 -AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
103522241 GCTCACATGC
Statistics
Matches: 584, Mismatches: 8, Indels: 21
0.95 0.01 0.03
Matches are distributed among these distances:
185 28 0.05
186 24 0.04
187 125 0.21
188 140 0.24
189 114 0.20
190 80 0.14
192 22 0.04
193 17 0.03
194 34 0.06
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (190 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGT
TTATGTTTTAAATTGACTCAATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:103522279 original size:16 final size:17
Alignment explanation
Indices: 103522258--103522291 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
103522248 TGCTGAGGTA
*
103522258 TTTTCAATTTATG-TTT
1 TTTTCAATCTATGCTTT
103522274 TTTTCAATCTATGCTTT
1 TTTTCAATCTATGCTTT
103522291 T
1 T
103522292 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTCAATCTATGCTTT
Found at i:103522394 original size:83 final size:87
Alignment explanation
Indices: 103522198--103522428 Score: 253
Period size: 90 Copynumber: 2.6 Consensus size: 87
103522188 TAATTTTTGT
*
103522198 TTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GCTCACATGCTGAGGTATTTT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGCGCACA-GCTGAGG-ATTTT
* **
103522262 CAATTTATGTTTTTTTCAATCTATGC
63 CAATTTATGCTTTACTCAATCTA-GC
* *
103522288 TTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG-GCAC-GCTGAGG-TTTTC
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGCGCACAGCTGAGGATTTTC
*
103522350 AATTTCTGCTTTACT-AATTCTA-C
64 AATTTATGCTTTACTCAA-TCTAGC
*
103522373 TTTTC-AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAG-GCCACACGCTGAG
1 TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGCG-CACA-GCTGAG
103522429 ATCTTTTCAA
Statistics
Matches: 125, Mismatches: 10, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
82 3 0.02
83 36 0.29
85 12 0.10
86 2 0.02
87 20 0.16
89 7 0.06
90 41 0.33
91 3 0.02
92 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (87 bp):
TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGCGCACAGCTGAGGATTTTCAA
TTTATGCTTTACTCAATCTAGC
Found at i:103522456 original size:13 final size:13
Alignment explanation
Indices: 103522440--103522473 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
103522430 TCTTTTCAAA
103522440 TTCTGTTTTTAAT
1 TTCTGTTTTTAAT
103522453 TTCTGTTTTTTTAAT
1 TTCTG--TTTTTAAT
103522468 TTCTGT
1 TTCTGT
103522474 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.32
15 13 0.68
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.71
Consensus pattern (13 bp):
TTCTGTTTTTAAT
Found at i:103522465 original size:15 final size:15
Alignment explanation
Indices: 103522445--103522473 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
103522435 TCAAATTCTG
103522445 TTTTTAATTTCTGTT
1 TTTTTAATTTCTGTT
103522460 TTTTTAATTTCTGT
1 TTTTTAATTTCTGT
103522474 GTTTCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (15 bp):
TTTTTAATTTCTGTT
Found at i:103522555 original size:13 final size:12
Alignment explanation
Indices: 103522537--103522567 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
103522527 GCTGAGGTAT
103522537 TTTCAATTTCTA
1 TTTCAATTTCTA
103522549 CTTTCAATTTCTA
1 -TTTCAATTTCTA
103522562 TTTCAA
1 TTTCAA
103522568 AAACCAACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.26, C:0.19, G:0.00, T:0.55
Consensus pattern (12 bp):
TTTCAATTTCTA
Found at i:103522629 original size:51 final size:52
Alignment explanation
Indices: 103522562--103522709 Score: 210
Period size: 51 Copynumber: 2.8 Consensus size: 52
103522552 TCAATTTCTA
* *
103522562 TTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTC-TAT-T
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCATATGT
*
103522612 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAAATTCTGT
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGC--A-TATGT
*
103522668 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
103522710 GGCTCACGTG
Statistics
Matches: 88, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
50 4 0.05
51 40 0.45
55 39 0.44
56 5 0.06
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (52 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCATATGT
Found at i:103523019 original size:30 final size:30
Alignment explanation
Indices: 103522979--103523080 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
103522969 AAAAAAATAA
* *
103522979 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAAC-TTTCATT
* *
103523009 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
* *
103523039 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
103523069 AAATTTCATTTT
1 AAATTTCATTTT
103523081 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 4 0.06
30 58 0.94
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCATT
Found at i:103523359 original size:10 final size:10
Alignment explanation
Indices: 103523340--103523389 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
103523330 TTTTTCGAAG
*
103523340 GAAAAAAGAA
1 GAAAAGAGAA
103523350 GAAAAGAGAA
1 GAAAAGAGAA
103523360 GAAAAGAGAA
1 GAAAAGAGAA
* *
103523370 -AGAGGAGAA
1 GAAAAGAGAA
103523379 GAAAAGA-AA
1 GAAAAGAGAA
103523388 GA
1 GA
103523390 GTACCGGCGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAGAGAA
Found at i:103523390 original size:17 final size:19
Alignment explanation
Indices: 103523343--103523385 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
103523333 TTCGAAGGAA
103523343 AAAAGAAGAAA-A-GAGAAG
1 AAAAG-AGAAAGAGGAGAAG
103523361 AAAAGAGAAAGAGGAGAAG
1 AAAAGAGAAAGAGGAGAAG
103523380 AAAAGA
1 AAAAGA
103523386 AAGAGTACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 6 0.26
19 12 0.52
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAGAGAAAGAGGAGAAG
Found at i:103523472 original size:10 final size:10
Alignment explanation
Indices: 103523457--103523481 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
103523447 GTAGGAGGAG
103523457 AAGAAGAAGA
1 AAGAAGAAGA
103523467 AAGAAGAAGA
1 AAGAAGAAGA
103523477 AAGAA
1 AAGAA
103523482 AAAAAAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (10 bp):
AAGAAGAAGA
Found at i:103523473 original size:13 final size:14
Alignment explanation
Indices: 103523455--103523493 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
103523445 GTGTAGGAGG
103523455 AGAAGAAG-AAGAA
1 AGAAGAAGAAAGAA
103523468 AGAAGAAGAAAGAA
1 AGAAGAAGAAAGAA
103523482 A-AA-AA-AAAGAA
1 AGAAGAAGAAAGAA
103523493 A
1 A
103523494 AAAAATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 7 0.28
12 2 0.08
13 10 0.40
14 6 0.24
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (14 bp):
AGAAGAAGAAAGAA
Found at i:103523660 original size:15 final size:14
Alignment explanation
Indices: 103523612--103523680 Score: 50
Period size: 15 Copynumber: 4.6 Consensus size: 14
103523602 CAACACAAAA
103523612 AAAAACAAATCAGCCC
1 AAAAA-AAA-CAGCCC
***
103523628 AAAAAAAACCAAAGC
1 AAAAAAAA-CAGCCC
103523643 AAAAAAAAGCAGCCC
1 AAAAAAAA-CAGCCC
103523658 AAAAAGAAA-AGGCCC
1 AAAAA-AAACA-GCCC
103523673 AAAAAAAA
1 AAAAAAAA
103523681 AGAAAAAACA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
14 4 0.09
15 31 0.72
16 8 0.19
ACGTcount: A:0.67, C:0.22, G:0.10, T:0.01
Consensus pattern (14 bp):
AAAAAAAACAGCCC
Found at i:103523682 original size:14 final size:15
Alignment explanation
Indices: 103523643--103523683 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
103523633 AAACCAAAGC
103523643 AAAAAAAAGCAGCCCA
1 AAAAAAAAG-AGCCCA
103523659 AAAAGAAAAG-GCCCA
1 AAAA-AAAAGAGCCCA
103523674 AAAAAAAAGA
1 AAAAAAAAGA
103523684 AAAAACAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.22
15 9 0.39
16 4 0.17
17 5 0.22
ACGTcount: A:0.68, C:0.17, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAGCCCA
Found at i:103523814 original size:14 final size:13
Alignment explanation
Indices: 103523796--103523882 Score: 79
Period size: 13 Copynumber: 6.5 Consensus size: 13
103523786 GCAGGCCAGG
103523796 AAAAAAAGAGAAA
1 AAAAAAAGAGAAA
*
103523809 GAAAAAAGA-AAA
1 AAAAAAAGAGAAA
*
103523821 AAAGAAAGAGAAA
1 AAAAAAAGAGAAA
103523834 AAAGAAAAGAGAAA
1 AAA-AAAAGAGAAA
* *
103523848 AAAGGAAAAAAGGAA
1 AAA--AAAAGAGAAA
*
103523863 AAAAGAAGA-AAA
1 AAAAAAAGAGAAA
103523875 AAGAAAAA
1 AA-AAAAA
103523883 AAAAGAGTTT
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
12 14 0.23
13 22 0.37
14 12 0.20
15 12 0.20
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAGAAA
Found at i:103523818 original size:7 final size:7
Alignment explanation
Indices: 103523797--103523888 Score: 84
Period size: 7 Copynumber: 13.1 Consensus size: 7
103523787 CAGGCCAGGA
103523797 AAAAAAG
1 AAAAAAG
*
103523804 -AGAAAG
1 AAAAAAG
103523810 AAAAAAG
1 AAAAAAG
103523817 AAAAAA-
1 AAAAAAG
*
103523823 AGAAAGAG
1 A-AAAAAG
103523831 AAAAAAG
1 AAAAAAG
*
103523838 AAAAGAG
1 AAAAAAG
103523845 AAAAAAGG
1 AAAAAA-G
103523853 AAAAAAGG
1 AAAAAA-G
103523861 AAAAAAG
1 AAAAAAG
103523868 AAGAAAA-
1 AA-AAAAG
*
103523875 AAGAAA-
1 AAAAAAG
103523881 AAAAAAG
1 AAAAAAG
103523888 A
1 A
103523889 GTTTCAATTC
Statistics
Matches: 71, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
6 14 0.20
7 37 0.52
8 20 0.28
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:103523823 original size:8 final size:8
Alignment explanation
Indices: 103523806--103523884 Score: 72
Period size: 8 Copynumber: 9.4 Consensus size: 8
103523796 AAAAAAAGAG
103523806 AAAG-AAA
1 AAAGAAAA
103523813 AAAGAAAA
1 AAAGAAAA
103523821 AAAGAAAGA
1 AAAGAAA-A
103523830 GAAA-AAAGA
1 -AAAGAAA-A
103523839 AAAGAGAAA
1 AAAGA-AAA
*
103523848 AAAGGAAA
1 AAAGAAAA
*
103523856 AAAGGAAA
1 AAAGAAAA
103523864 AAAGAAGAAA
1 AAAG-A-AAA
103523874 AAAGAAAA
1 AAAGAAAA
103523882 AAA
1 AAA
103523885 AAGAGTTTCA
Statistics
Matches: 63, Mismatches: 2, Indels: 13
0.81 0.03 0.17
Matches are distributed among these distances:
7 4 0.06
8 34 0.54
9 13 0.21
10 12 0.19
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAGAAAA
Found at i:103523871 original size:28 final size:25
Alignment explanation
Indices: 103523806--103523883 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 25
103523796 AAAAAAAGAG
103523806 AAAGAAAAAAGAAAAAAAGAAAGAGAAA
1 AAAGAAAAAAG-AAAAAAGAAA--GAAA
*
103523834 AAAGAAAAGAGAAAAAAG---GAAA
1 AAAGAAAAAAGAAAAAAGAAAGAAA
*
103523856 AAAGGAAAAAAGAAGAAA-AAAGAAA
1 AAA-GAAAAAAGAAAAAAGAAAGAAA
103523881 AAA
1 AAA
103523884 AAAGAGTTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
22 7 0.16
23 12 0.28
25 7 0.16
27 7 0.16
28 10 0.23
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (25 bp):
AAAGAAAAAAGAAAAAAGAAAGAAA
Found at i:103523884 original size:28 final size:29
Alignment explanation
Indices: 103523798--103523889 Score: 91
Period size: 30 Copynumber: 3.0 Consensus size: 29
103523788 AGGCCAGGAA
103523798 AAAAAGAGAAAGAAAAAAGAAAAAAAGAAAGAG
1 AAAAA-AG-AAGAAAAAAG-AAAAAA-AAAGAG
103523831 AAAAAAGAA-AAGAGAAA-AAAGGAAAAAAG-G
1 AAAAAAGAAGAA-A-AAAGAAA--AAAAAAGAG
103523861 AAAAAAGAAGAAAAAAGAAAAAAAAAGAG
1 AAAAAAGAAGAAAAAAGAAAAAAAAAGAG
103523890 TTTCAATTCG
Statistics
Matches: 52, Mismatches: 0, Indels: 18
0.74 0.00 0.26
Matches are distributed among these distances:
28 7 0.13
29 4 0.08
30 19 0.37
31 9 0.17
32 8 0.15
33 5 0.10
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (29 bp):
AAAAAAGAAGAAAAAAGAAAAAAAAAGAG
Found at i:103524243 original size:20 final size:21
Alignment explanation
Indices: 103524206--103524244 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
103524196 AAAAAATATT
*
103524206 AAAAAAAAGTCTCATATTTAC
1 AAAAAAAAATCTCATATTTAC
*
103524227 AAAAAAAAATTTC-TATTT
1 AAAAAAAAATCTCATATTT
103524245 TTCAAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.33
Consensus pattern (21 bp):
AAAAAAAAATCTCATATTTAC
Found at i:103524291 original size:21 final size:21
Alignment explanation
Indices: 103524252--103524290 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
103524242 TTTTTCAAAA
103524252 TTTCTCGTGCCTTCAAAAATT
1 TTTCTCGTGCCTTCAAAAATT
*
103524273 TTTCTCGTG-TTTCAAAAA
1 TTTCTCGTGCCTTCAAAAA
103524291 AAATATATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.44
Consensus pattern (21 bp):
TTTCTCGTGCCTTCAAAAATT
Done.