Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 322 of 343
Found at i:103820715 original size:46 final size:45
Alignment explanation
Indices: 103820614--103820707 Score: 127
Period size: 46 Copynumber: 2.1 Consensus size: 45
103820604 TGTAACCCGC
* * *
103820614 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GACATGCGCAA
* *
103820660 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-AGATGCTCAA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGACATGCGCAA
103820704 CCAT
1 CCAT
103820708 CCTAGTGACA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 10 0.23
46 33 0.77
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGACATGCGCAA
Found at i:103822929 original size:6 final size:6
Alignment explanation
Indices: 103822918--103822946 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
103822908 TTTGGAAAAT
103822918 TCTCCC TCTCCC TCTCCC TCTCCC TCTCC
1 TCTCCC TCTCCC TCTCCC TCTCCC TCTCC
103822947 ATTTCTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (6 bp):
TCTCCC
Found at i:103825651 original size:17 final size:19
Alignment explanation
Indices: 103825618--103825652 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
103825608 ATTATTTGGA
103825618 TATTGTATAACTTTTGTTT
1 TATTGTATAACTTTTGTTT
103825637 TATTGT-TAA-TTTTGTT
1 TATTGTATAACTTTTGTT
103825653 ACTATTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.20, C:0.03, G:0.11, T:0.66
Consensus pattern (19 bp):
TATTGTATAACTTTTGTTT
Found at i:103829180 original size:5 final size:5
Alignment explanation
Indices: 103829170--103829197 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
103829160 AAATATCTTA
103829170 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
103829198 CATACCATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:103829950 original size:28 final size:27
Alignment explanation
Indices: 103829918--103829970 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
103829908 CATTGGTAGA
*
103829918 TGAACTAACAAATTAATAAAGAAATTGG
1 TGAACCAACAAATTAATAAA-AAATTGG
*
103829946 TGAACCAACAAATTAATTAAAAATT
1 TGAACCAACAAATTAATAAAAAATT
103829971 AGTGTGCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.26
Consensus pattern (27 bp):
TGAACCAACAAATTAATAAAAAATTGG
Found at i:103835046 original size:15 final size:15
Alignment explanation
Indices: 103835026--103835055 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
103835016 AAACCTTTCA
*
103835026 ACATCATCTACAGGG
1 ACATCATCCACAGGG
103835041 ACATCATCCACAGGG
1 ACATCATCCACAGGG
103835056 TTATAAGTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.17
Consensus pattern (15 bp):
ACATCATCCACAGGG
Found at i:103855573 original size:18 final size:17
Alignment explanation
Indices: 103855542--103855575 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
103855532 TAAAAATAAA
103855542 ACTTTACAACTTGGGCC
1 ACTTTACAACTTGGGCC
*
103855559 ACTTTGACAATTTGGGC
1 ACTTT-ACAACTTGGGC
103855576 TGATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (17 bp):
ACTTTACAACTTGGGCC
Found at i:103855859 original size:16 final size:16
Alignment explanation
Indices: 103855834--103855873 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
103855824 AAAAATTATG
103855834 TTTTCCAT-CCTTCTAA
1 TTTTCCATCCCTTC-AA
*
103855850 TTTTCTATCCCTTCAA
1 TTTTCCATCCCTTCAA
103855866 TTTTCCAT
1 TTTTCCAT
103855874 TGTACCAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.17, C:0.30, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTCCATCCCTTCAA
Found at i:103859550 original size:142 final size:149
Alignment explanation
Indices: 103859392--103859711 Score: 333
Period size: 150 Copynumber: 2.2 Consensus size: 149
103859382 AAAGGGGAAA
* *
103859392 AAATGCATGCAGTGAAACAAACCCAGAAA-ACCAAAAGATAC-TT-AAC-A-C-ATTA-AAACCC
1 AAATGCATGTAATGAAACAAACCCA-AAACACCAAAA-ATACGTTAAACTATCAATTATAAACCC
* *
103859450 ATTAACCCACATAAAC-AAAATAAATCCCTGAAAATCACATGAGATAAAAGAGGGAAA-A-AAAA
64 ATTAACCCACATAAACAAAAAAAAAT-CCTGAAAATCACATAAGAT-AAAGA--GAAACAGAAAA
* * *
103859512 -G-AGAGAAAACGATAAAGAAA-AC
125 GGAAAAAAAAACGAGAAAGAAAGAC
* * * * *
103859534 AAATGCATGTACTGAAACATATCCAAAACACCAAAAATGCGTTAAAACTTTATCAATTATAACCC
1 AAATGCATGTAATGAAACAAACCCAAAACACCAAAAATACGTT-AAAC--TATCAATTATAAACC
*
103859599 CATTAACCCAGATAAACAAAAAAAAATCCTGAAAATCACATAAGATAAAGAGAAACAGAAAAGGA
63 CATTAACCCACATAAACAAAAAAAAATCCTGAAAATCACATAAGATAAAGAGAAACAGAAAAGGA
*
103859664 AAAAAAAAGGAGAAAGAAAGAC
128 AAAAAAAACGAGAAAGAAAGAC
*
103859686 GAATGCATGTAATGAAACAAACCCAA
1 AAATGCATGTAATGAAACAAACCCAA
103859712 CAAATCAGCA
Statistics
Matches: 145, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
141 6 0.04
142 30 0.21
144 3 0.02
147 5 0.03
148 2 0.01
149 13 0.09
150 39 0.27
151 23 0.16
152 24 0.17
ACGTcount: A:0.56, C:0.17, G:0.12, T:0.14
Consensus pattern (149 bp):
AAATGCATGTAATGAAACAAACCCAAAACACCAAAAATACGTTAAACTATCAATTATAAACCCAT
TAACCCACATAAACAAAAAAAAATCCTGAAAATCACATAAGATAAAGAGAAACAGAAAAGGAAAA
AAAAACGAGAAAGAAAGAC
Found at i:103862092 original size:43 final size:43
Alignment explanation
Indices: 103862036--103862208 Score: 170
Period size: 43 Copynumber: 4.0 Consensus size: 43
103862026 AGCTCATATA
* * * * *
103862036 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * * *
103862078 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATTATATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
103862121 ATGCCAATGTCCTAGACATGGTCTTAGACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* * *
103862164 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
103862207 AT
1 AT
103862209 AACCTAATGT
Statistics
Matches: 102, Mismatches: 26, Indels: 5
0.77 0.20 0.04
Matches are distributed among these distances:
42 6 0.06
43 95 0.93
44 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:103864845 original size:22 final size:22
Alignment explanation
Indices: 103864820--103864863 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
103864810 TAGTCATATA
103864820 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
103864842 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
103864864 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:103864908 original size:15 final size:14
Alignment explanation
Indices: 103864883--103864922 Score: 57
Period size: 13 Copynumber: 2.9 Consensus size: 14
103864873 TTTCAATTTT
103864883 ATTTT-AATAATAA
1 ATTTTAAATAATAA
103864896 ATTTTAAAATAAT-A
1 ATTTT-AAATAATAA
103864910 ATTTTAAATAATA
1 ATTTTAAATAATA
103864923 TTATTCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 12 0.50
14 6 0.25
15 6 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAAATAATAA
Found at i:103866068 original size:40 final size:41
Alignment explanation
Indices: 103866023--103866128 Score: 123
Period size: 40 Copynumber: 2.7 Consensus size: 41
103866013 ACATTTTGAC
*
103866023 ATACCAAAATTTTTAAAGG-TTTATC-ACTATTTCTAAGGATT
1 ATACCAAAATTTTTAAAGGATTTACCAAC-ATTTCTAAGG-TT
*
103866064 -TACCAAAATTTAT-AAGGATTTACCAACATTTCTAAGGTT
1 ATACCAAAATTTTTAAAGGATTTACCAACATTTCTAAGGTT
* *
103866103 ATACCAAAAATTTT-ATGGATTTACCA
1 ATACCAAAATTTTTAAAGGATTTACCA
103866129 GAATATCTAA
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
39 6 0.11
40 49 0.86
41 2 0.04
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (41 bp):
ATACCAAAATTTTTAAAGGATTTACCAACATTTCTAAGGTT
Found at i:103866107 original size:20 final size:20
Alignment explanation
Indices: 103866024--103866138 Score: 101
Period size: 20 Copynumber: 5.8 Consensus size: 20
103866014 CATTTTGACA
*
103866024 TACCAAAATTTTTAAAGG-TT
1 TACCAAAATTTCT-AAGGATT
* **
103866044 TATCACTATTTCTAAGGATT
1 TACCAAAATTTCTAAGGATT
*
103866064 TACCAAAATTTATAAGGATT
1 TACCAAAATTTCTAAGGATT
*
103866084 TACCAACATTTCTAAGG-TT
1 TACCAAAATTTCTAAGGATT
*
103866103 ATACCAAAAATTT-TATGGATT
1 -TACC-AAAATTTCTAAGGATT
* *
103866124 TACCAGAATATCTAA
1 TACCAAAATTTCTAA
103866139 AGATAATTTG
Statistics
Matches: 75, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
19 11 0.15
20 56 0.75
21 8 0.11
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (20 bp):
TACCAAAATTTCTAAGGATT
Found at i:103866316 original size:20 final size:20
Alignment explanation
Indices: 103866293--103866381 Score: 65
Period size: 20 Copynumber: 4.5 Consensus size: 20
103866283 GAAATATTTT
103866293 TAAATCCTTAAAAATTTTGG
1 TAAATCCTTAAAAATTTTGG
* * **
103866313 TAAAGCCCT-AAAATTCAGG
1 TAAATCCTTAAAAATTTTGG
* * *
103866332 TAAATCTTTAGATATTTTGG
1 TAAATCCTTAAAAATTTTGG
* **
103866352 TATAA-GCTTAGGAATTTTGG
1 TA-AATCCTTAAAAATTTTGG
103866372 TAAATCCTTA
1 TAAATCCTTA
103866382 GATATAACCT
Statistics
Matches: 50, Mismatches: 16, Indels: 6
0.69 0.22 0.08
Matches are distributed among these distances:
19 16 0.32
20 32 0.64
21 2 0.04
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (20 bp):
TAAATCCTTAAAAATTTTGG
Found at i:103866482 original size:20 final size:20
Alignment explanation
Indices: 103866447--103866513 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
103866437 TTTAATGAAG
103866447 CCTTA-AAATCTTTGGTAAAT
1 CCTTAGAAAT-TTTGGTAAAT
* *
103866467 CTTTAGATATTTTGGTATAA-
1 CCTTAGAAATTTTGGTA-AAT
103866487 CCTTAGAAATTTTGGTAAAT
1 CCTTAGAAATTTTGGTAAAT
*
103866507 GCTTAGA
1 CCTTAGA
103866514 TTGTTTTGGA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 2 0.05
20 32 0.82
21 5 0.13
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (20 bp):
CCTTAGAAATTTTGGTAAAT
Found at i:103878191 original size:28 final size:29
Alignment explanation
Indices: 103878141--103878210 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
103878131 AAATTTTAGA
*
103878141 AAAAAAAATATAAAAATTATTTTTAAAAAAT
1 AAAAAAAAT-T-AAAATTATTTTAAAAAAAT
103878172 AAAAAAAATTAAAATT-TTTTAAAAAAAT
1 AAAAAAAATTAAAATTATTTTAAAAAAAT
* *
103878200 CATAAAAATTA
1 AAAAAAAATTA
103878211 TAAGACATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 20 0.56
29 6 0.17
30 1 0.03
31 9 0.25
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.31
Consensus pattern (29 bp):
AAAAAAAATTAAAATTATTTTAAAAAAAT
Found at i:103878534 original size:7 final size:7
Alignment explanation
Indices: 103878516--103878547 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
103878506 TAATGTTTGC
103878516 AATTATTA
1 AATTA-TA
103878524 AATTATA
1 AATTATA
103878531 AATTATA
1 AATTATA
103878538 AATTATA
1 AATTATA
103878545 AAT
1 AAT
103878548 ATCTTATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 19 0.79
8 5 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AATTATA
Found at i:103878572 original size:10 final size:9
Alignment explanation
Indices: 103878557--103878617 Score: 54
Period size: 10 Copynumber: 6.4 Consensus size: 9
103878547 TATCTTATAA
103878557 TTTAATGATT
1 TTTAAT-ATT
103878567 TTTAATAAATT
1 TTTAAT--ATT
*
103878578 TTTTATATT
1 TTTAATATT
103878587 TTATAATATT
1 TT-TAATATT
103878597 TTT-AT-TCT
1 TTTAATAT-T
103878605 TTTAATATT
1 TTTAATATT
103878614 TTTA
1 TTTA
103878618 TACTTTTGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
7 1 0.02
8 6 0.14
9 13 0.30
10 15 0.35
11 8 0.19
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTAATATT
Found at i:103878610 original size:17 final size:17
Alignment explanation
Indices: 103878577--103878624 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
103878567 TTTAATAAAT
103878577 TTTTTATAT-TTTATAATA
1 TTTTTAT-TCTTT-TAATA
103878595 TTTTTATTCTTTTAATA
1 TTTTTATTCTTTTAATA
*
103878612 TTTTTATACTTTT
1 TTTTTATTCTTTT
103878625 GTATTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 18 0.64
18 10 0.36
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTATTCTTTTAATA
Found at i:103878632 original size:8 final size:8
Alignment explanation
Indices: 103878577--103878632 Score: 51
Period size: 8 Copynumber: 6.6 Consensus size: 8
103878567 TTTAATAAAT
103878577 TTTTTATA
1 TTTTTATA
103878585 TTTTATAATA
1 TTTT-T-ATA
103878595 TTTTTAT-
1 TTTTTATA
103878602 TCTTTTAATA
1 T-TTTT-ATA
103878612 TTTTTATA
1 TTTTTATA
* *
103878620 CTTTTGTA
1 TTTTTATA
103878628 TTTTT
1 TTTTT
103878633 TTTTCTAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
7 1 0.03
8 23 0.57
9 8 0.20
10 8 0.20
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (8 bp):
TTTTTATA
Found at i:103878632 original size:17 final size:17
Alignment explanation
Indices: 103878577--103878633 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
103878567 TTTAATAAAT
103878577 TTTTTATA-TTTTATAATA
1 TTTTTATACTTTT-T-ATA
* *
103878595 TTTTTATTCTTTTAATA
1 TTTTTATACTTTTTATA
103878612 TTTTTATACTTTTGTAT-
1 TTTTTATACTTTT-TATA
103878629 TTTTT
1 TTTTT
103878634 TTTCTAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
17 20 0.61
18 9 0.27
19 4 0.12
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTTTATACTTTTTATA
Found at i:103878634 original size:27 final size:26
Alignment explanation
Indices: 103878576--103878634 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
103878566 TTTTAATAAA
103878576 TTTTTTATATTTTATAATATTTTTAT
1 TTTTTTATATTTTATAATATTTTTAT
*
103878602 TCTTTTAATATTTT-T-ATACTTTTGTAT
1 T-TTTTTATATTTTATAATA-TTTT-TAT
103878629 TTTTTT
1 TTTTTT
103878635 TTCTAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
25 3 0.11
26 10 0.36
27 15 0.54
ACGTcount: A:0.22, C:0.03, G:0.02, T:0.73
Consensus pattern (26 bp):
TTTTTTATATTTTATAATATTTTTAT
Found at i:103878693 original size:29 final size:30
Alignment explanation
Indices: 103878661--103878725 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
103878651 AAAATTAAAT
*
103878661 ATTTTTTATT-TTTT-CTATATTTTTTTATC
1 ATTTTTTATTCTTTTAATAT-TTTTTTTATC
103878690 A-TTTTTATTGCTTTTAATATTTTTTTTATC
1 ATTTTTTATT-CTTTTAATATTTTTTTTATC
103878720 -TTTTTT
1 ATTTTTT
103878726 CTATGTGTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
28 8 0.26
29 1 0.03
30 19 0.61
31 3 0.10
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (30 bp):
ATTTTTTATTCTTTTAATATTTTTTTTATC
Found at i:103878859 original size:22 final size:20
Alignment explanation
Indices: 103878841--103878887 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
103878831 TTTTTTTTCC
103878841 TATACTTTATAATAATTTTTA
1 TATA-TTTATAATAATTTTTA
*
103878862 TATATTTGTAATAATTTTT-
1 TATATTTATAATAATTTTTA
103878881 TATATTT
1 TATATTT
103878888 TCTATTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.28
20 14 0.56
21 4 0.16
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
TATATTTATAATAATTTTTA
Found at i:103878865 original size:21 final size:21
Alignment explanation
Indices: 103878824--103878885 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
103878814 TTTATGATTT
* *
103878824 TTTATAAT-TTTTTTTCCTATA
1 TTTATAATAATTTTTT-ATATA
103878845 CTTTATAATAA-TTTTTATATA
1 -TTTATAATAATTTTTTATATA
*
103878866 TTTGTAATAATTTTTTATAT
1 TTTATAATAATTTTTTATAT
103878886 TTTCTATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 9 0.26
21 13 0.37
22 13 0.37
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTATAATAATTTTTTATATA
Found at i:103881637 original size:38 final size:38
Alignment explanation
Indices: 103881586--103881661 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
103881576 TCTGAAGTAA
103881586 TCATGTATGACACCCAAATTCGAGAATTATATGGAAAC
1 TCATGTATGACACCCAAATTCGAGAATTATATGGAAAC
*
103881624 TCATGTATGACACCCAAATTTGAGAATTATATGGAAAC
1 TCATGTATGACACCCAAATTCGAGAATTATATGGAAAC
103881662 GAGCATAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (38 bp):
TCATGTATGACACCCAAATTCGAGAATTATATGGAAAC
Found at i:103881790 original size:92 final size:92
Alignment explanation
Indices: 103881633--103881817 Score: 343
Period size: 92 Copynumber: 2.0 Consensus size: 92
103881623 CTCATGTATG
*
103881633 ACACCCAAATTTGAGAATTATATGGAAACGAGCATAAAGGCATGATCCTCCAAATATATCAAAAA
1 ACACCCAAATTCGAGAATTATATGGAAACGAGCATAAAGGCATGATCCTCCAAATATATCAAAAA
103881698 ACATACTCATGTTGAACACATTACAGT
66 ACATACTCATGTTGAACACATTACAGT
* *
103881725 ACACCCAAATTCGAGAATTATATGGAAACGAGCATAGAGGCATTATCCTCCAAATATATCAAAAA
1 ACACCCAAATTCGAGAATTATATGGAAACGAGCATAAAGGCATGATCCTCCAAATATATCAAAAA
103881790 ACATACTCATGTTGAACACATTACAGT
66 ACATACTCATGTTGAACACATTACAGT
103881817 A
1 A
103881818 TCTGACACTT
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 90 1.00
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.24
Consensus pattern (92 bp):
ACACCCAAATTCGAGAATTATATGGAAACGAGCATAAAGGCATGATCCTCCAAATATATCAAAAA
ACATACTCATGTTGAACACATTACAGT
Found at i:103882282 original size:17 final size:17
Alignment explanation
Indices: 103882260--103882313 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
103882250 AAAGAATTGA
103882260 ACATATCCATGTAGGAC
1 ACATATCCATGTAGGAC
* *
103882277 ACATAT--A-GAATTGA-
1 ACATATCCATGTA-GGAC
103882291 ACATATCCATGTAGGAC
1 ACATATCCATGTAGGAC
103882308 ACATAT
1 ACATAT
103882314 ATGTATCTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
14 8 0.29
15 3 0.11
16 3 0.11
17 14 0.50
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (17 bp):
ACATATCCATGTAGGAC
Found at i:103882290 original size:31 final size:31
Alignment explanation
Indices: 103882252--103882314 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
103882242 AAAACTTTAA
103882252 AGAATTGAACATATCCATGTAGGACACATAT
1 AGAATTGAACATATCCATGTAGGACACATAT
103882283 AGAATTGAACATATCCATGTAGGACACATAT
1 AGAATTGAACATATCCATGTAGGACACATAT
103882314 A
1 A
103882315 TGTATCTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (31 bp):
AGAATTGAACATATCCATGTAGGACACATAT
Found at i:103886365 original size:26 final size:26
Alignment explanation
Indices: 103886311--103886365 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
103886301 CTTATATCGA
* *
103886311 TTTTTTTACTTTGATATTTAAATATT
1 TTTTTTTACTTTGATACTTAAATAAT
*
103886337 TTTTTTTA-TTATGATACTTATATAAT
1 TTTTTTTACTT-TGATACTTAAATAAT
103886363 TTT
1 TTT
103886366 ATCAGTGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (26 bp):
TTTTTTTACTTTGATACTTAAATAAT
Found at i:103886801 original size:17 final size:17
Alignment explanation
Indices: 103886779--103886817 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
103886769 GTAATTTCTA
* *
103886779 TAAAAATCTTAAAATTT
1 TAAAAATATTAAAAATT
103886796 TAAAAATATTAAAAATT
1 TAAAAATATTAAAAATT
103886813 TAAAA
1 TAAAA
103886818 GAAAATTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAAAATATTAAAAATT
Found at i:103895050 original size:21 final size:21
Alignment explanation
Indices: 103895021--103895061 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
103895011 ATCTGCTCAA
* *
103895021 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
*
103895042 ACTCTACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
103895062 TCGCTTGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:103896912 original size:43 final size:43
Alignment explanation
Indices: 103896864--103896948 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
103896854 AATAAGGCAA
103896864 TGTACCGATTTAATATTAAGCTATCGATTTCATCGCTATGTTG
1 TGTACCGATTTAATATTAAGCTATCGATTTCATCGCTATGTTG
103896907 TGTACCGATTTAATATTAAGCTATCGATTTCATCGCTATGTT
1 TGTACCGATTTAATATTAAGCTATCGATTTCATCGCTATGTT
103896949 AGGTGAAATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.42
Consensus pattern (43 bp):
TGTACCGATTTAATATTAAGCTATCGATTTCATCGCTATGTTG
Found at i:103898394 original size:12 final size:12
Alignment explanation
Indices: 103898377--103898412 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
103898367 ATTCATTTGA
103898377 CATTCATGCATT
1 CATTCATGCATT
103898389 CATTCATGCATT
1 CATTCATGCATT
*
103898401 CATTCATACATT
1 CATTCATGCATT
103898413 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:103907010 original size:72 final size:71
Alignment explanation
Indices: 103906874--103907064 Score: 220
Period size: 72 Copynumber: 2.6 Consensus size: 71
103906864 TAAGCCTTTT
* * ** *
103906874 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGG
1 AATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGATGAGG
*
103906939 TATTTTC
65 TAATTTC
* ** *
103906946 GATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACATGATGAGG
1 AATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGATGAGG
103907011 TAATTTC
65 TAATTTC
* * * *
103907018 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGATGGGTTGA
1 AATTTTTGTTT-TTAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
103907065 ACCTTTTAAT
Statistics
Matches: 99, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
71 2 0.02
72 67 0.68
73 30 0.30
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (71 bp):
AATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGATGAGGT
AATTTC
Found at i:103907155 original size:53 final size:53
Alignment explanation
Indices: 103907018--103907175 Score: 192
Period size: 53 Copynumber: 2.9 Consensus size: 53
103907008 AGGTAATTTC
* * * * *
103907018 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGATGGGTTGAA-CCTTTT
1 AATTTTTGTTTTTCAA-AATCAACTCATATTGCTAGAGGTGAGTT-AAGCCTTTT
** **
103907072 AATTTCTACTTTTTCAAAATCAGTTCATATTGCTAGAGGTGAGTTAAGCCTTTT
1 AATTT-TTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTAAGCCTTTT
*
103907126 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCT
1 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTAAGCCT
103907176 CAGGTCACGC
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
53 42 0.48
54 39 0.44
55 7 0.08
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.40
Consensus pattern (53 bp):
AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTAAGCCTTTT
Found at i:103907169 original size:180 final size:183
Alignment explanation
Indices: 103906947--103907315 Score: 496
Period size: 193 Copynumber: 2.0 Consensus size: 183
103906937 GGTATTTTCG
** *
103906947 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACATGATGAGGT
1 ATTTTTGTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGATGAGGT
103907012 AATTTCAATTTCTG-T-TTG-TCAAGAATCAACTCATATTGCGAGA-GATGGGTTGAACCTTTTA
66 AATTTCAATTTCTGTTATTGTTCAAGAATCAACTCATATTGCGAGATG-TGGGTTGAACCTTTTA
* *
103907073 ATTTCTACTTTTTCAAAATCAGTTCATATTGCTAGAGGTGAGTTAAGCCTTTTA
130 ATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTTTTA
* ** *
103907127 ATTTTTGT-TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGG
1 ATTTTTGTGTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGATGAGG
*
103907191 TATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGATGTGGGTT
65 TAATTTCAATTTCTG--------TTA--TTGTTCAAGAATCAACTCATATTGCGAGATGTGGGTT
*
103907256 GAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
120 GAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCT
103907316 CAGGTCACGC
Statistics
Matches: 163, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
179 4 0.02
180 66 0.40
189 1 0.01
192 3 0.02
193 88 0.54
194 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (183 bp):
ATTTTTGTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGATGAGGT
AATTTCAATTTCTGTTATTGTTCAAGAATCAACTCATATTGCGAGATGTGGGTTGAACCTTTTAA
TTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTTTTA
Found at i:103907323 original size:140 final size:140
Alignment explanation
Indices: 103907096--103907401 Score: 501
Period size: 140 Copynumber: 2.2 Consensus size: 140
103907086 CAAAATCAGT
* ** *
103907096 TCATATTGCTAGAGGTGAGTT-AAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTA
1 TCATATTGCAAGAGGTGAGTTGAAGCCTTTTAATTTTACTTTTTCAAAATCAACTCATATTGCGA
103907160 GAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTC
66 GAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTC
103907225 AAGAATCAAC
131 AAGAATCAAC
* * * *
103907235 TCATATTGCGAGATGTGGGTTGAA-CCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCG
1 TCATATTGCAAGAGGTGAGTTGAAGCCTTTTAATTT-TACTTTTTCAAAATCAACTCATATTGCG
*
103907299 AGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTATGTTGTT
65 AGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTT
103907364 CAAGAATCAAC
130 CAAGAATCAAC
103907375 TCATATTGCAAGAGGTGAGTTG-AGCCT
1 TCATATTGCAAGAGGTGAGTTGAAGCCT
103907402 CAGGTCACGC
Statistics
Matches: 153, Mismatches: 11, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
139 30 0.20
140 123 0.80
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.38
Consensus pattern (140 bp):
TCATATTGCAAGAGGTGAGTTGAAGCCTTTTAATTTTACTTTTTCAAAATCAACTCATATTGCGA
GAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTC
AAGAATCAAC
Found at i:103907351 original size:13 final size:13
Alignment explanation
Indices: 103907333--103907366 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
103907323 CGCTGAGGTA
*
103907333 TTTTCAATTTCTG
1 TTTTCAATTTATG
103907346 TTTTCAATTTATG
1 TTTTCAATTTATG
103907359 TTGTTCAA
1 TT-TTCAA
103907367 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:103907410 original size:86 final size:86
Alignment explanation
Indices: 103907277--103907483 Score: 380
Period size: 86 Copynumber: 2.4 Consensus size: 86
103907267 TTTCTACTTT
*
103907277 TTCAA-AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAT
1 TTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAT
103907341 TTCTGTTTTCAATTTATGTTG
66 TTCTGTTTTCAATTTATGTTG
*
103907362 TTCAAGAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAT
1 TTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAT
103907427 TTCTGTTTTCAATTTATGTTG
66 TTCTGTTTTCAATTTATGTTG
*
103907448 TTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGA
103907484 ACCTTTTAAT
Statistics
Matches: 117, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
85 5 0.04
86 112 0.96
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.36
Consensus pattern (86 bp):
TTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAT
TTCTGTTTTCAATTTATGTTG
Found at i:103907437 original size:13 final size:13
Alignment explanation
Indices: 103907419--103907452 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
103907409 CGCTGAGGTA
*
103907419 TTTTCAATTTCTG
1 TTTTCAATTTATG
103907432 TTTTCAATTTATG
1 TTTTCAATTTATG
103907445 TTGTTCAA
1 TT-TTCAA
103907453 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:103907536 original size:226 final size:226
Alignment explanation
Indices: 103907122--103907581 Score: 818
Period size: 226 Copynumber: 2.0 Consensus size: 226
103907112 GAGTTAAGCC
* * *
103907122 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTATGTTGTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACGC
*
103907186 TGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGATGT
66 TGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGT
103907251 GGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
131 GGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
103907316 CAGG-TCAC-GCTGAGGTATTTTCAATTTCTG
196 C-GGTTCACAGCTGAGGTATTTTCAATTTCTG
103907346 TTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACG
1 TTTTCAATTTATGTTGTTCAA-AATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACG
*
103907411 CTGAGGTATTTTCAATTTCTGTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGG
65 CTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGG
103907476 TGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCC
130 TGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCC
103907541 TCGGTTCACATGCTGAGGTATTTTCAATTTCTG
195 TCGGTTCACA-GCTGAGGTATTTTCAATTTCTG
103907574 TCTTTCAA
1 T-TTTCAA
103907582 AAAAAAAATT
Statistics
Matches: 225, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
224 4 0.02
225 16 0.07
226 176 0.78
228 23 0.10
229 6 0.03
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.39
Consensus pattern (226 bp):
TTTTCAATTTATGTTGTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACGC
TGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGT
GGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
CGGTTCACAGCTGAGGTATTTTCAATTTCTG
Found at i:103907685 original size:72 final size:72
Alignment explanation
Indices: 103907501--103907727 Score: 260
Period size: 72 Copynumber: 3.0 Consensus size: 72
103907491 AATTTCTACT
* ** * * * *
103907501 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAATT
103907564 TCAATTTCTG
63 TCAATTTCTG
* *
103907574 TCTTTCAAAAAAAAAATTTCAACTCATATTGTGAAAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 T-TTTC------AAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
103907639 TAATTTCAATTTCTG
58 TAATTTCAATTTCTG
103907654 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
103907719 ATTTCTG
66 ATTTCTG
103907726 TT
1 TT
103907728 CAAAATGAGT
Statistics
Matches: 133, Mismatches: 11, Indels: 21
0.81 0.07 0.13
Matches are distributed among these distances:
72 63 0.47
73 5 0.04
74 4 0.03
79 4 0.03
80 28 0.21
82 28 0.21
83 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:103907738 original size:49 final size:49
Alignment explanation
Indices: 103907681--103907776 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
103907671 ATATTGCGAG
*
103907681 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
103907730 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
103907777 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:103907822 original size:121 final size:121
Alignment explanation
Indices: 103907608--103907848 Score: 428
Period size: 121 Copynumber: 2.0 Consensus size: 121
103907598 CATATTGTGA
*
103907608 AAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCAT
1 AAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCAT
* *
103907673 ATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTC
66 ATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTC
103907729 AAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCAT
1 AAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCAT
* * *
103907794 ATTACGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 ATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
103907849 TTTCAAAAAA
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 114 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (121 bp):
AAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCAT
ATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTC
Found at i:103907982 original size:75 final size:75
Alignment explanation
Indices: 103907730--103908083 Score: 455
Period size: 78 Copynumber: 4.7 Consensus size: 75
103907720 TTTCTGTTCA
* *
103907730 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
*
103907792 ATATTACGAG
66 ATATTGCGAG
* *
103907802 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC---AAAAAAATCAA
*
103907867 CTCATATTGTGAG
63 CTCATATTGCGAG
*
103907880 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
103907945 ATATTGCGAG
66 ATATTGCGAG
** * * *
103907955 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* *
103908019 GTATTGTGAG
66 ATATTGCGAG
*** * * *
103908029 AGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
103908084 TTTCTGCCTT
Statistics
Matches: 252, Mismatches: 21, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
72 42 0.17
73 5 0.02
74 44 0.17
75 63 0.25
76 23 0.09
77 6 0.02
78 69 0.27
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:103908175 original size:93 final size:93
Alignment explanation
Indices: 103908005--103908176 Score: 238
Period size: 93 Copynumber: 1.8 Consensus size: 93
103907995 TTCTGTTGTC
* * *
103908005 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
* *
103908070 TTTCCGTTTTTCAATTTCTGCCTTTCAA
66 TTTCCATCTTTCAATTTCTGCCTTTCAA
* * * *
103908098 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
*
103908162 ATTTCTATCTTTCAA
65 ATTTCCATCTTTCAA
103908177 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
92 2 0.03
93 66 0.97
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTCCATCTTTCAATTTCTGCCTTTCAA
Found at i:103908207 original size:77 final size:78
Alignment explanation
Indices: 103908077--103908460 Score: 353
Period size: 79 Copynumber: 4.7 Consensus size: 78
103908067 CAATTTCCGT
*** *
103908077 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTATTTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGAT
*
103908142 CACGCGCTGAGCTA
65 CACACGCTGAGCTA
* * * *
103908156 TTTTCAATTTCTATCTTTC-AAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAG-CTTCAGAT
1 TTTTCAATTTCTATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGAT
* *
103908219 CACACACTGAGGTA
65 CACACGCTGAGCTA
* * * *
103908233 TTTTTTCAATTTATATTTTTC-AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGA
1 --TTTTCAATTTCTATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGA
* *
103908297 TCACATG-TCGAGGTA
64 TCACACGCT-GAGCTA
** *
103908312 TTTTCAAAATCTATTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTATTTTTCAAA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* **
103908377 GCCTTGGCTCACGTGCTGAGCTA
56 GCCTTGGATCACACGCTGAGCTA
*
103908400 TTTTCAATTTCTATTTTTTTTCAAAAAAAATTTAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTCTA---TTTTTCAAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
103908461 TTTTTAATTT
Statistics
Matches: 252, Mismatches: 32, Indels: 39
0.78 0.10 0.12
Matches are distributed among these distances:
76 3 0.01
77 63 0.25
78 3 0.01
79 79 0.31
80 2 0.01
81 5 0.02
82 28 0.11
88 59 0.23
89 1 0.00
91 9 0.04
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (78 bp):
TTTTCAATTTCTATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATC
ACACGCTGAGCTA
Found at i:103908236 original size:170 final size:165
Alignment explanation
Indices: 103907912--103908236 Score: 454
Period size: 170 Copynumber: 1.9 Consensus size: 165
103907902 TGCTGAGGTA
**
103907912 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * * * *
103907977 CGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGC
66 CGCTGAGCTAATTTCAATTTCTATTGTCAAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGC
* *
103908042 CTCAGGTCACACGCCGAGGTATTTTCAATTTCCGT
131 CTCAGATCACACACCGAGGTATTTTCAATTTCCGT
*
103908077 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
1 TTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
* * *
103908141 TCACGCGCTGAGCTATTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAAAGGCGAG
63 --ACACGCTGAGCTAATTTCAATTTCTAT-TGTCAAAAAAATCAACTCATATTGCGAAAGGCGAG
* *
103908206 TTGAGCTTCAGATCACACACTGAGGTATTTT
125 TTGAGCCTCAGATCACACACCGAGGTATTTT
103908237 TTCAATTTAT
Statistics
Matches: 139, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
165 17 0.12
166 2 0.01
167 39 0.28
169 23 0.17
170 58 0.42
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (165 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGCTAATTTCAATTTCTATTGTCAAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGC
CTCAGATCACACACCGAGGTATTTTCAATTTCCGT
Found at i:103908405 original size:88 final size:88
Alignment explanation
Indices: 103908256--103908417 Score: 236
Period size: 88 Copynumber: 1.8 Consensus size: 88
103908246 TATTTTTCAA
* *
103908256 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGATCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGATCACATGTCGAGCTATTTTCAAAA
103908321 TCTATTTTTCAAATTCTGTTTTC
66 TCTATTTTTCAAATTCTGTTTTC
* * * * *
103908344 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGATCACATGTC-GAGCTATTTTCAAA
*
103908408 TTCTATTTTT
65 ATCTATTTTT
103908418 TTTCAAAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
87 1 0.02
88 64 0.98
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGATCACATGTCGAGCTATTTTCAAAA
TCTATTTTTCAAATTCTGTTTTC
Found at i:103908458 original size:249 final size:242
Alignment explanation
Indices: 103907857--103908462 Score: 733
Period size: 244 Copynumber: 2.5 Consensus size: 242
103907847 TTTTTCAAAA
* * ** * *
103907857 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGC-TCACGTGCTGAGCTATTTTCAA
* * * *
103907919 TTTCT-GTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
65 TTTCTATTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGCACACACTGA
* ** *
103907983 GGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGG
130 GGTAATTTCAATTTATGTTGTCAAAAAAATCAACTCACATTGCGAGAGGCGAGTTGAGCCTCAGG
** * *
103908048 TCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
195 TCACACGCCGAGGTATTTTCAAAATCCATTTTTCAAATTCTGCCTTTC
* *
103908096 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTC
1 ---AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTC
* * *
103908161 AATTTCTA-TCTTTCAAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGCTTCAGATCACACA
63 AATTTCTATTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG--CACACA
* * * * *
103908225 CTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAG
126 CTGAGGTA--ATTTCAATTTAT-GTTGTCAAAAAAATCAACTCACATTGCGAGAGGCGAGTTGAG
* * * *
103908290 CCTC-GGATCACATGTCGAGGTATTTTCAAAATCTATTTTTCAAATTCTG-TTTTC
188 CCTCAGG-TCACACGCCGAGGTATTTTCAAAATCCATTTTTCAAATTCTGCCTTTC
103908344 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
*
103908408 TTCTATTTTTTTTCAAAAAAAATTTAACTCATATTGCGAGAGGTGAGTTGAGCTT
66 TTCTA--TTTTTTC-AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCTT
103908463 TTTAATTTCT
Statistics
Matches: 312, Mismatches: 37, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
242 34 0.11
243 1 0.00
244 133 0.43
245 1 0.00
246 12 0.04
247 5 0.02
248 23 0.07
249 103 0.33
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (242 bp):
AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
TTCTATTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGCACACACTGAG
GTAATTTCAATTTATGTTGTCAAAAAAATCAACTCACATTGCGAGAGGCGAGTTGAGCCTCAGGT
CACACGCCGAGGTATTTTCAAAATCCATTTTTCAAATTCTGCCTTTC
Found at i:103908478 original size:30 final size:30
Alignment explanation
Indices: 103908444--103908503 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
103908434 ACTCATATTG
103908444 CGAGAGGTGAGTTGAG-CTTTTTAATTTCTA
1 CGAGAGGTGAGTTGAGTC-TTTTAATTTCTA
*
103908474 CGAGAGTTGAGTTGAGTCTTTTAATTTCTA
1 CGAGAGGTGAGTTGAGTCTTTTAATTTCTA
103908504 TTTTTCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.42
Consensus pattern (30 bp):
CGAGAGGTGAGTTGAGTCTTTTAATTTCTA
Found at i:103909228 original size:20 final size:20
Alignment explanation
Indices: 103909205--103909250 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
103909195 AGCCCCCCCC
103909205 AAAAAAACCTAAC-CCCAAA
1 AAAAAAACCTAACTCCCAAA
103909224 AAAAAAACCTAACTCCCAAA
1 AAAAAAACCTAACTCCCAAA
103909244 AAAAAAA
1 AAAAAAA
103909251 AACCAAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.67, C:0.26, G:0.00, T:0.07
Consensus pattern (20 bp):
AAAAAAACCTAACTCCCAAA
Found at i:103912674 original size:31 final size:31
Alignment explanation
Indices: 103912639--103912708 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
103912629 CTTGTCACTT
* * *
103912639 GTAGCCGAAGCTATCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
* * *
103912670 GTAGCCGGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
103912701 GTAGCCGA
1 GTAGCCGA
103912709 TGATCAGGTA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTAATCAA
Found at i:103912730 original size:46 final size:46
Alignment explanation
Indices: 103912663--103912754 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
103912653 CACTATTCAC
* *
103912663 TGATCAGGTAGCCGGAGCTACCATTTTTCACTAATCAAGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * *
103912709 TGATCAGGTAGCCGAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
103912755 AGCTACCACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (46 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:103912747 original size:31 final size:31
Alignment explanation
Indices: 103912709--103912767 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
103912699 AAGTAGCCGA
103912709 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
103912740 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCGAAGCTACCACTTTT
103912768 TACTTGCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAT
Found at i:103912842 original size:50 final size:50
Alignment explanation
Indices: 103912747--103913073 Score: 528
Period size: 50 Copynumber: 6.5 Consensus size: 50
103912737 CATTGATCAG
* * * * *
103912747 GTAGCCGAAGCTACCACTTTTTACTTGCCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
103912798 GTAGCTGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* * *
103912848 GTAGCCGAAGCTATCACTTATCACTTTCACTTATCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
103912898 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
103912948 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
103912998 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
103913048 GTAGACAAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
103913074 GTTGCCATGG
Statistics
Matches: 259, Mismatches: 17, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
50 237 0.92
51 22 0.08
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:103919285 original size:31 final size:31
Alignment explanation
Indices: 103919247--103919307 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
103919237 GAAATAGATA
* *
103919247 CATGTGGCGAAGAGAGT-AATTGTTGAGCAAT
1 CATGTGGCAAAAAGAGTAAATT-TTGAGCAAT
103919278 CATGTGGCAAAAAGAGTAAATTTTGAGCAA
1 CATGTGGCAAAAAGAGTAAATTTTGAGCAA
103919308 GTATAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.38, C:0.10, G:0.28, T:0.25
Consensus pattern (31 bp):
CATGTGGCAAAAAGAGTAAATTTTGAGCAAT
Found at i:103933432 original size:58 final size:58
Alignment explanation
Indices: 103933370--103933485 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
103933360 ATATTATATT
103933370 AACCAGGTAGAGTTTCTTGTTATTGATTTTTGGTTGAAACTAGAGAAGAAGAAATGAA
1 AACCAGGTAGAGTTTCTTGTTATTGATTTTTGGTTGAAACTAGAGAAGAAGAAATGAA
103933428 AACCAGGTAGAGTTTCTTGTTATTGATTTTTGGTTGAAACTAGAGAAGAAGAAATGAA
1 AACCAGGTAGAGTTTCTTGTTATTGATTTTTGGTTGAAACTAGAGAAGAAGAAATGAA
103933486 GAAGATGAGT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (58 bp):
AACCAGGTAGAGTTTCTTGTTATTGATTTTTGGTTGAAACTAGAGAAGAAGAAATGAA
Found at i:103935047 original size:18 final size:17
Alignment explanation
Indices: 103935020--103935053 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
103935010 TACAAAGAGC
*
103935020 TTTTTTTCTTTTTCTTT
1 TTTTTTTCTTTCTCTTT
103935037 TTTTTTGTCTTTCTCTT
1 TTTTTT-TCTTTCTCTT
103935054 CCTAAAAGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTTTTCTTTCTCTTT
Found at i:103939907 original size:23 final size:21
Alignment explanation
Indices: 103939865--103939909 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
103939855 GAGGTGAGAT
**
103939865 AAAATTTTAAATTTTATATTA
1 AAAATTTTAAATTAAATATTA
103939886 AAAATATTTAAATTAAATTATTA
1 AAAAT-TTTAAATTAAA-TATTA
103939909 A
1 A
103939910 CATAAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 9 0.45
23 6 0.30
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
AAAATTTTAAATTAAATATTA
Found at i:103943136 original size:21 final size:21
Alignment explanation
Indices: 103943074--103943173 Score: 71
Period size: 21 Copynumber: 4.9 Consensus size: 21
103943064 GTACATCGTT
* *
103943074 AACAGAAGCTC-GAA-AGCTA
1 AACAGAAGCTCATAAGAGCTG
* * *
103943093 AACAGAAACCCATAAG-GTTTG
1 AACAGAAGCTCATAAGAG-CTG
**
103943114 AACAGAAGCTTGTAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
* * *
103943135 AACGGAAACTCATAAGAGTTG
1 AACAGAAGCTCATAAGAGCTG
*
103943156 AACAAAAGCTCATAAGAG
1 AACAGAAGCTCATAAGAG
103943174 TCGAACTCAT
Statistics
Matches: 59, Mismatches: 18, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
19 9 0.15
20 3 0.05
21 46 0.78
22 1 0.02
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.16
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:103943149 original size:42 final size:42
Alignment explanation
Indices: 103943074--103943216 Score: 142
Period size: 42 Copynumber: 3.6 Consensus size: 42
103943064 GTACATCGTT
* * *
103943074 AACAGAAGCTCG-AA-AGCTAAACAGAAACCCATAAGGTTTG
1 AACAAAAGCTCGTAAGAGCTAAACGGAAACTCATAAGGTTTG
* * *
103943114 AACAGAAGCTTGTAAGAGCTGAACGGAAACTCATAAGAG-TTG
1 AACAAAAGCTCGTAAGAGCTAAACGGAAACTCATAAG-GTTTG
* *
103943156 AACAAAAGCTCATAAGAG-T---C-G-AACTCATAAGATTTG
1 AACAAAAGCTCGTAAGAGCTAAACGGAAACTCATAAGGTTTG
103943192 AACAAAAGCTCGTAAGAGCTAAACG
1 AACAAAAGCTCGTAAGAGCTAAACG
103943217 AAAAGTAAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 17
0.77 0.08 0.15
Matches are distributed among these distances:
36 30 0.35
37 2 0.02
38 1 0.01
40 12 0.14
41 3 0.04
42 36 0.42
43 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.17
Consensus pattern (42 bp):
AACAAAAGCTCGTAAGAGCTAAACGGAAACTCATAAGGTTTG
Found at i:103943174 original size:21 final size:21
Alignment explanation
Indices: 103943103--103943209 Score: 68
Period size: 21 Copynumber: 5.4 Consensus size: 21
103943093 AACAGAAACC
*
103943103 CATAAG-GTTTGAACAGAAGCT
1 CATAAGAG-TTGAACAAAAGCT
** * *
103943124 TGTAAGAGCTGAACGGAAA-CT
1 CATAAGAGTTGAAC-AAAAGCT
103943145 CATAAGAGTTGAACAAAAGCT
1 CATAAGAGTTGAACAAAAGCT
*
103943166 CATAAGAG-T---C-GAA-CT
1 CATAAGAGTTGAACAAAAGCT
*
103943181 CATAAGATTTGAACAAAAGCT
1 CATAAGAGTTGAACAAAAGCT
*
103943202 CGTAAGAG
1 CATAAGAG
103943210 CTAAACGAAA
Statistics
Matches: 63, Mismatches: 14, Indels: 18
0.66 0.15 0.19
Matches are distributed among these distances:
15 9 0.14
16 3 0.05
17 1 0.02
19 1 0.02
20 6 0.10
21 40 0.63
22 3 0.05
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (21 bp):
CATAAGAGTTGAACAAAAGCT
Found at i:103943193 original size:36 final size:36
Alignment explanation
Indices: 103943141--103943209 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
103943131 GCTGAACGGA
103943141 AACTCATAAGAGTTGAACAAAAGCTCATAAGAGTCG
1 AACTCATAAGAGTTGAACAAAAGCTCATAAGAGTCG
* *
103943177 AACTCATAAGATTTGAACAAAAGCTCGTAAGAG
1 AACTCATAAGAGTTGAACAAAAGCTCATAAGAG
103943210 CTAAACGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.20
Consensus pattern (36 bp):
AACTCATAAGAGTTGAACAAAAGCTCATAAGAGTCG
Found at i:103948428 original size:20 final size:20
Alignment explanation
Indices: 103948400--103948437 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
103948390 GTATAAAAAT
* *
103948400 TAAATTGATTCATTTAATAA
1 TAAAATGATTAATTTAATAA
103948420 TAAAATGATTAATTTAAT
1 TAAAATGATTAATTTAAT
103948438 CCCGTCCTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (20 bp):
TAAAATGATTAATTTAATAA
Found at i:103950647 original size:24 final size:24
Alignment explanation
Indices: 103950611--103950658 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
103950601 GATTTTCTAG
103950611 AAAAGCTGATATTTTCTAATGTTT
1 AAAAGCTGATATTTTCTAATGTTT
*
103950635 AAAAGCTGTTATTTTCTAATGTTT
1 AAAAGCTGATATTTTCTAATGTTT
103950659 GAATTATTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.48
Consensus pattern (24 bp):
AAAAGCTGATATTTTCTAATGTTT
Found at i:103953091 original size:21 final size:21
Alignment explanation
Indices: 103953067--103953106 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
103953057 GGCCGTGTTC
*
103953067 CTCAGCCATATGGCTGTGTCT
1 CTCAGCCACATGGCTGTGTCT
* *
103953088 CTCAGGCACATGGTTGTGT
1 CTCAGCCACATGGCTGTGT
103953107 ATTCCTATCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.25, G:0.28, T:0.33
Consensus pattern (21 bp):
CTCAGCCACATGGCTGTGTCT
Found at i:103955261 original size:47 final size:45
Alignment explanation
Indices: 103955160--103955261 Score: 109
Period size: 47 Copynumber: 2.2 Consensus size: 45
103955150 ATCATTTTCA
*
103955160 GATACAGAATCAATACAGATATACAGAATCAGACATAATTATTTTG
1 GATACA-AATCAATACAGATATACAGAATCAGACATAAGTATTTTG
* *
103955206 AATAACAAATTCAATACGGATATACAGAATCGAAGACACT-AGTA-TTTG
1 GAT-ACAAA-TCAATACAGATATACAGAATC--AGACA-TAAGTATTTTG
103955254 GATACAAA
1 GATACAAA
103955262 ATAACGGAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
46 4 0.09
47 28 0.60
48 6 0.13
49 8 0.17
50 1 0.02
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.25
Consensus pattern (45 bp):
GATACAAATCAATACAGATATACAGAATCAGACATAAGTATTTTG
Found at i:103960082 original size:5 final size:5
Alignment explanation
Indices: 103960068--103960100 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
103960058 AAATAGGCTA
103960068 CATA- CATAC CATAC CATAC CATAC CATAC CATA
1 CATAC CATAC CATAC CATAC CATAC CATAC CATA
103960101 TATACATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.21
Consensus pattern (5 bp):
CATAC
Found at i:103960092 original size:15 final size:14
Alignment explanation
Indices: 103960068--103960105 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
103960058 AAATAGGCTA
103960068 CATACATACCATAC
1 CATACATACCATAC
103960082 CATACCATACCATAC
1 CATA-CATACCATAC
*
103960097 CATATATAC
1 CATACATAC
103960106 ATAAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.42, C:0.34, G:0.00, T:0.24
Consensus pattern (14 bp):
CATACATACCATAC
Found at i:103964208 original size:47 final size:51
Alignment explanation
Indices: 103964112--103964209 Score: 150
Period size: 47 Copynumber: 2.0 Consensus size: 51
103964102 AGAACAAGGA
*
103964112 AGAGGTACGACCTCATCAGTTTTTTTTTTTAGAATGTCTTGATTACGTTTT
1 AGAGGTACGACCTCATCAGTTTTGTTTTTTAGAATGTCTTGATTACGTTTT
*
103964163 AGAGGTACGA-C-C-TCAG-TTTGTTTTTTAGAATGTCTTGATTGCGTTTT
1 AGAGGTACGACCTCATCAGTTTTGTTTTTTAGAATGTCTTGATTACGTTTT
103964210 CATTAATTGG
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 29 0.64
48 4 0.09
49 1 0.02
50 1 0.02
51 10 0.22
ACGTcount: A:0.20, C:0.13, G:0.20, T:0.46
Consensus pattern (51 bp):
AGAGGTACGACCTCATCAGTTTTGTTTTTTAGAATGTCTTGATTACGTTTT
Found at i:103978337 original size:52 final size:52
Alignment explanation
Indices: 103978266--103978365 Score: 146
Period size: 52 Copynumber: 1.9 Consensus size: 52
103978256 ATCAAGTGAC
** * *
103978266 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTGG
* *
103978318 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGAGACAA
103978366 AGTGATAAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (52 bp):
AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTGG
Found at i:103978389 original size:37 final size:37
Alignment explanation
Indices: 103978339--103978485 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
103978329 TAATAGCTTC
* *
103978339 GGCTATACTTATCTGATCAAGAGACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
103978376 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
*
103978413 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
**
103978450 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
103978485 G
1 G
103978486 ATCATACGTA
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
Found at i:103980509 original size:19 final size:19
Alignment explanation
Indices: 103980485--103980544 Score: 120
Period size: 19 Copynumber: 3.2 Consensus size: 19
103980475 TTACTTTAGT
103980485 TTCCTTATTAGGAACTCTA
1 TTCCTTATTAGGAACTCTA
103980504 TTCCTTATTAGGAACTCTA
1 TTCCTTATTAGGAACTCTA
103980523 TTCCTTATTAGGAACTCTA
1 TTCCTTATTAGGAACTCTA
103980542 TTC
1 TTC
103980545 AATATATGAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.43
Consensus pattern (19 bp):
TTCCTTATTAGGAACTCTA
Found at i:103990261 original size:20 final size:19
Alignment explanation
Indices: 103990219--103990261 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
103990209 GGTCACCTAA
* * *
103990219 TAAAACATTTTGTTTCACT
1 TAAAACATTTTGGTCCACG
103990238 TAAAACAATTTTGGTCCACG
1 TAAAAC-ATTTTGGTCCACG
103990258 TAAA
1 TAAA
103990262 TTTAAAAATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.37
Consensus pattern (19 bp):
TAAAACATTTTGGTCCACG
Found at i:103993881 original size:15 final size:16
Alignment explanation
Indices: 103993861--103993893 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
103993851 TTAATATGAA
103993861 ATAATTCATA-AATTT
1 ATAATTCATATAATTT
*
103993876 ATAATTTATATAATTT
1 ATAATTCATATAATTT
103993892 AT
1 AT
103993894 TTTATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (16 bp):
ATAATTCATATAATTT
Found at i:103994713 original size:31 final size:31
Alignment explanation
Indices: 103994678--103994744 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
103994668 AAAAAACCTT
*
103994678 AATAGC-CTAATGACTTAAATAAAAACTTTTA
1 AATAGCTC-AATGACTTAAATAAAAAATTTTA
* * *
103994709 AATAGTTCAGTGACTTAAATAAAAAATTTTG
1 AATAGCTCAATGACTTAAATAAAAAATTTTA
103994740 AATAG
1 AATAG
103994745 TTCACTGATC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.48, C:0.09, G:0.10, T:0.33
Consensus pattern (31 bp):
AATAGCTCAATGACTTAAATAAAAAATTTTA
Found at i:103994745 original size:31 final size:31
Alignment explanation
Indices: 103994688--103994748 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
103994678 AATAGCCTAA
*
103994688 TGACTTAAATAAAAACTTTTAAATAGTTCAG
1 TGACTTAAATAAAAAATTTTAAATAGTTCAG
*
103994719 TGACTTAAATAAAAAATTTTGAATAGTTCA
1 TGACTTAAATAAAAAATTTTAAATAGTTCA
103994749 CTGATCAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.36
Consensus pattern (31 bp):
TGACTTAAATAAAAAATTTTAAATAGTTCAG
Found at i:104003827 original size:27 final size:27
Alignment explanation
Indices: 104003779--104003883 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
104003769 ACGAGGCTGC
* * *
104003779 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
104003806 CAGATATTGTGGCAGAGCCACCAGAT-
1 CAGATATTGTGGCAGAGCCACCAGATA
* * **
104003832 CCGATAATTGTGGCATAGCCACC-GGGA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
104003859 CAGATATATGTGGCAGAGCCACCAG
1 CAGATAT-TGTGGCAGAGCCACCAG
104003884 GACGCTTCCT
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.11
27 57 0.88
28 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:104005466 original size:26 final size:26
Alignment explanation
Indices: 104005435--104005542 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
104005425 TGAAATGCCC
*
104005435 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
104005461 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
104005487 ACCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
104005513 ATCATGGACCATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
104005539 ATCA
1 ATCA
104005543 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:104012313 original size:27 final size:26
Alignment explanation
Indices: 104012265--104012397 Score: 124
Period size: 27 Copynumber: 4.9 Consensus size: 26
104012255 GCGAGGCTGC
* * *
104012265 CAGATATTGTGACAAAGTCACCAGAT
1 CAGATATTGTGGCAGAGCCACCAGAT
104012291 ACAGATATTGTGGCAGAGCCACCAGAT
1 -CAGATATTGTGGCAGAGCCACCAGAT
* * *
104012318 CCGATAATTGTGGCATAGCCACCGGGA-
1 CAGAT-ATTGTGGCAGAGCCACC-AGAT
*
104012345 CAGATATATGTGGCAGAGCCACCAAAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
* *
104012372 TAGATAAATTGTGGCATAGCCACCAG
1 CAGAT--ATTGTGGCAGAGCCACCAG
104012398 GACGCTTCCT
Statistics
Matches: 87, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
26 7 0.08
27 61 0.70
28 17 0.20
29 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:104012357 original size:54 final size:54
Alignment explanation
Indices: 104012291--104012400 Score: 168
Period size: 55 Copynumber: 2.0 Consensus size: 54
104012281 GTCACCAGAT
* * *
104012291 ACAGATATTGTGGCAGAGCCACCAGATCCGAT-AATTGTGGCATAGCCACCGGG
1 ACAGATATTGTGGCAGAGCCACCAAATCAGATAAATTGTGGCATAGCCACCAGG
*
104012344 ACAGATATATGTGGCAGAGCCACCAAATTAGATAAATTGTGGCATAGCCACCAGG
1 ACAGATAT-TGTGGCAGAGCCACCAAATCAGATAAATTGTGGCATAGCCACCAGG
104012399 AC
1 AC
104012401 GCTTCCTCCA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
53 8 0.16
54 21 0.41
55 22 0.43
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (54 bp):
ACAGATATTGTGGCAGAGCCACCAAATCAGATAAATTGTGGCATAGCCACCAGG
Found at i:104013982 original size:26 final size:26
Alignment explanation
Indices: 104013951--104014058 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
104013941 TGAAATGCCC
*
104013951 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
104013977 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* ** *
104014003 ACCATGGAATGTTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
104014029 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
104014055 ATCA
1 ATCA
104014059 ATTTGTACCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:104023175 original size:40 final size:40
Alignment explanation
Indices: 104023120--104023200 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
104023110 CGGGATTTGA
*
104023120 AAGATATCATGCATTAGCATATCCCATCAATTCTAACTTT
1 AAGATATCATGCATTAGCATATCCCATCAAGTCTAACTTT
104023160 AAGATATCATGCATTAGCATATCCCATCAAGTCTAACTTT
1 AAGATATCATGCATTAGCATATCCCATCAAGTCTAACTTT
104023200 A
1 A
104023201 CTCCATTTGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (40 bp):
AAGATATCATGCATTAGCATATCCCATCAAGTCTAACTTT
Found at i:104024652 original size:28 final size:28
Alignment explanation
Indices: 104024592--104024654 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
104024582 TCTTTGGTAG
* * *
104024592 ACTTCCCATATAAGACAGTCATTGGCGG
1 ACTTTCCACATAAGACAGTCATTGGCGA
* * *
104024620 CCTTTCCACATAAGATAGTTATTGGCGA
1 ACTTTCCACATAAGACAGTCATTGGCGA
104024648 ACTTTCC
1 ACTTTCC
104024655 TTGATTTTGG
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (28 bp):
ACTTTCCACATAAGACAGTCATTGGCGA
Found at i:104027212 original size:7 final size:7
Alignment explanation
Indices: 104027202--104027228 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
104027192 ACTCCAAACT
104027202 CAAAATA
1 CAAAATA
104027209 CAAAATA
1 CAAAATA
104027216 CAAAATA
1 CAAAATA
104027223 CAAAAT
1 CAAAAT
104027229 TTTCCTGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.15, G:0.00, T:0.15
Consensus pattern (7 bp):
CAAAATA
Found at i:104034363 original size:24 final size:24
Alignment explanation
Indices: 104034317--104034365 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
104034307 TTTGATATGG
*
104034317 AATTTTTTAAATTATAAGGATTTT
1 AATTTTTTAAATTATAAGAATTTT
* * *
104034341 AATTTTTTTAATTTTAATAATTTT
1 AATTTTTTAAATTATAAGAATTTT
104034365 A
1 A
104034366 TGCTTTTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (24 bp):
AATTTTTTAAATTATAAGAATTTT
Found at i:104034513 original size:21 final size:23
Alignment explanation
Indices: 104034488--104034531 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
104034478 TTTCACCTAA
*
104034488 TTATAATTT-TA-AAAATAATTT
1 TTATAATTTCTAGAAAAAAATTT
104034509 TTATAATTTCTAGAAAAAAATTT
1 TTATAATTTCTAGAAAAAAATTT
104034532 ATGAAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 2 0.10
23 9 0.45
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTATAATTTCTAGAAAAAAATTT
Found at i:104036192 original size:56 final size:56
Alignment explanation
Indices: 104036130--104036244 Score: 230
Period size: 56 Copynumber: 2.1 Consensus size: 56
104036120 CTATACTATC
104036130 AAATATGATATAAAAAATTAAAATGTAATTGCACTCAATTAACTTAACGCGATTAA
1 AAATATGATATAAAAAATTAAAATGTAATTGCACTCAATTAACTTAACGCGATTAA
104036186 AAATATGATATAAAAAATTAAAATGTAATTGCACTCAATTAACTTAACGCGATTAA
1 AAATATGATATAAAAAATTAAAATGTAATTGCACTCAATTAACTTAACGCGATTAA
104036242 AAA
1 AAA
104036245 ATTAGAGTTC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.30
Consensus pattern (56 bp):
AAATATGATATAAAAAATTAAAATGTAATTGCACTCAATTAACTTAACGCGATTAA
Found at i:104037061 original size:39 final size:39
Alignment explanation
Indices: 104037007--104037085 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
104036997 AAACCCTTAA
104037007 TTACTCAACAACACTTCAATTATCATTATTCAAATTTAT
1 TTACTCAACAACACTTCAATTATCATTATTCAAATTTAT
104037046 TTACTCAACAACACTTCAATTATCATTATTCAAATTTAT
1 TTACTCAACAACACTTCAATTATCATTATTCAAATTTAT
104037085 T
1 T
104037086 ATTAATTTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (39 bp):
TTACTCAACAACACTTCAATTATCATTATTCAAATTTAT
Found at i:104040002 original size:39 final size:38
Alignment explanation
Indices: 104039957--104040097 Score: 210
Period size: 39 Copynumber: 3.6 Consensus size: 38
104039947 CCCGTGCTAC
104039957 TTTGTTTTATTATTAATTAAAACTACTCCCCCATACTAT
1 TTTGTTTTATTATTAATTAAAACTA-TCCCCCATACTAT
*
104039996 TTTGTTTTATTATTAATTAAAACTATTCCCCATACTAT
1 TTTGTTTTATTATTAATTAAAACTATCCCCCATACTAT
*
104040034 TTTGTTTTCATTATTAATTAAAACCATTCCCCCATACTAT
1 TTTGTTTT-ATTATTAATTAAAACTA-TCCCCCATACTAT
* *
104040074 TTTATTTTTATTTTTAATTAAAAC
1 TTT-GTTTTATTATTAATTAAAAC
104040098 CATACTTTAT
Statistics
Matches: 94, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
38 20 0.21
39 41 0.44
40 29 0.31
41 4 0.04
ACGTcount: A:0.31, C:0.17, G:0.02, T:0.50
Consensus pattern (38 bp):
TTTGTTTTATTATTAATTAAAACTATCCCCCATACTAT
Found at i:104041882 original size:145 final size:145
Alignment explanation
Indices: 104041611--104041898 Score: 533
Period size: 145 Copynumber: 2.0 Consensus size: 145
104041601 GATTCGTTCT
* *
104041611 CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAGCCAAATC
1 CTGACGATACAGAGACGACAAATCATCTTAGATATGCTGTCTCGTAATCACGTGAAAGCCAAATC
104041676 AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
66 AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
104041741 GAAATCATCTGAACG
131 GAAATCATCTGAACG
*
104041756 CTGACGA-ACAGAGACGACAAATCATCTTAGCTATGCTGTCTCGTAATCACGTGAAAGCCAAATC
1 CTGACGATACAGAGACGACAAATCATCTTAGATATGCTGTCTCGTAATCACGTGAAAGCCAAATC
104041820 AGCTATGTCTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAG
66 AGCTATGTC-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAG
104041885 TGAAATCATCTGAA
130 TGAAATCATCTGAA
104041899 GGCGAGATCT
Statistics
Matches: 139, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
144 63 0.45
145 76 0.55
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (145 bp):
CTGACGATACAGAGACGACAAATCATCTTAGATATGCTGTCTCGTAATCACGTGAAAGCCAAATC
AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
GAAATCATCTGAACG
Found at i:104042054 original size:350 final size:347
Alignment explanation
Indices: 104041409--104042103 Score: 1286
Period size: 350 Copynumber: 2.0 Consensus size: 347
104041399 GATTTGTTCC
* *
104041409 CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAGCCAAATC
1 CTGACGATACAGAGACGACAAATCATCTTAGATATGCTGTCTCGTAATCACGTGAAAGCCAAATC
*
104041474 AGCTATGCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTA
66 AGCTATGCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTA
104041539 AACATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCAATCAAAGTGAAGATGCCAAACTTCGAT
131 AACATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCAATCAAAGTGAAGATGCCAAACTTCGAT
104041604 TCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAG
196 TCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAG
104041669 CCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTG
261 CCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTG
104041734 CTTCAGTGAAATCATCTGAACG
326 CTTCAGTGAAATCATCTGAACG
*
104041756 CTGACGA-ACAGAGACGACAAATCATCTTAGCTATGCTGTCTCGTAATCACGTGAAAGCCAAATC
1 CTGACGATACAGAGACGACAAATCATCTTAGATATGCTGTCTCGTAATCACGTGAAAGCCAAATC
104041820 AGCTATGTCTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAG
66 AGCTATG-C-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAG
*
104041885 TGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTT
129 T-AAA-CATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCAATCAAAGTGAAGATGCCAAACTT
104041950 CGATTCGTTCTCTGAC-ATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTG
192 CGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTG
104042014 AAAGCCAAATCAGCTATGTCTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
257 AAAGCCAAATCAGCTATGTC-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
104042079 ATCTGCTTCAGTGAAATCATCTGAA
321 ATCTGCTTCAGTGAAATCATCTGAA
104042104 GGCGAGATCT
Statistics
Matches: 338, Mismatches: 5, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
346 61 0.18
347 8 0.02
348 55 0.16
349 71 0.21
350 143 0.42
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (347 bp):
CTGACGATACAGAGACGACAAATCATCTTAGATATGCTGTCTCGTAATCACGTGAAAGCCAAATC
AGCTATGCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTA
AACATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCAATCAAAGTGAAGATGCCAAACTTCGAT
TCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAG
CCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTG
CTTCAGTGAAATCATCTGAACG
Found at i:104042115 original size:205 final size:206
Alignment explanation
Indices: 104041763--104042323 Score: 1015
Period size: 205 Copynumber: 2.7 Consensus size: 206
104041753 ACGCTGACGA
* * *
104041763 ACAGAGACGACAAATCATCTTAGCTATGCTGTCTCGTAATCACGTGAAAGCCAAATCAGCTATGT
1 ACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAGCCAAATCAGCTATGT
104041828 CTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTGAAATCA
66 CTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTGAAATCA
104041893 TCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGT
131 TCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGT
104041958 TCTCTGAC-AT
196 TCTCTGACAAT
104041968 ACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAGCCAAATCAGCTATGT
1 ACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAGCCAAATCAGCTATGT
104042033 CTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTGAAATCA
66 CTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTGAAATCA
104042098 TCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGT
131 TCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGT
104042163 TCTCTGACAAT
196 TCTCTGACAAT
104042174 ACAGAGACGACAAATCATCTTAGATTTGC-TTCATCGTAATCACGTGAAAGCCAAATCAGCTATG
1 ACAGAGACGACAAATCATCTTAGATTTGCTTTC-TCGTAATCACGTGAAAGCCAAATCAGCTATG
*
104042238 TC-TTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT-ATAA-
65 TCTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTGA-AAT
* *
104042300 CATCTGAAGGCCAGATCTGTTATG
129 CATCTGAAGGCGAGATCTGCTATG
104042324 CTGCGGCCTA
Statistics
Matches: 347, Mismatches: 6, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
204 23 0.07
205 260 0.75
206 64 0.18
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (206 bp):
ACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAGCCAAATCAGCTATGT
CTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTGAAATCA
TCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGT
TCTCTGACAAT
Found at i:104050314 original size:13 final size:15
Alignment explanation
Indices: 104050284--104050314 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
104050274 TTCCAGATTT
104050284 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
104050299 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
104050314 T
1 T
104050315 AGAAAGCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:104054921 original size:40 final size:39
Alignment explanation
Indices: 104054787--104054940 Score: 240
Period size: 39 Copynumber: 3.9 Consensus size: 39
104054777 TTGATTCCAC
* * *
104054787 TCCCCCATGCTACTTTGTTTTATTATTAATTAAAACTAC
1 TCCCCCATACTATTTTGTTTTATTATTAATTAAAACTAT
104054826 TCCCCCATACTATTTTGTTTTATTATTAATTAAAACTAT
1 TCCCCCATACTATTTTGTTTTATTATTAATTAAAACTAT
104054865 T-CCCCATACTATTTTGTTTTCATTATTAATTAAAA-TCAT
1 TCCCCCATACTATTTTGTTTT-ATTATTAATTAAAACT-AT
104054904 TCCCCCATACTATTTTGTTTTTATTATTAATTAAAAC
1 TCCCCCATACTATTTTG-TTTTATTATTAATTAAAAC
104054941 CATACTTTAT
Statistics
Matches: 107, Mismatches: 3, Indels: 8
0.91 0.03 0.07
Matches are distributed among these distances:
38 20 0.19
39 54 0.50
40 29 0.27
41 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.47
Consensus pattern (39 bp):
TCCCCCATACTATTTTGTTTTATTATTAATTAAAACTAT
Found at i:104057938 original size:30 final size:30
Alignment explanation
Indices: 104057904--104057966 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
104057894 ACTTATTTTA
104057904 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
104057934 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
104057964 TTG
1 TTG
104057967 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:104058120 original size:12 final size:12
Alignment explanation
Indices: 104058090--104058122 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
104058080 TATATATTTT
104058090 AAAATT-ATATA
1 AAAATTAATATA
104058101 AAAA-TAATATA
1 AAAATTAATATA
104058112 AAAATTAATAT
1 AAAATTAATAT
104058123 GGGCGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:104058425 original size:18 final size:19
Alignment explanation
Indices: 104058391--104058426 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
104058381 TTTTTTTGTT
*
104058391 TAAATTTAATTATAAAATA
1 TAAATTTAATGATAAAATA
104058410 TAAATTTAA-GATAAAAT
1 TAAATTTAATGATAAAAT
104058427 TAATTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (19 bp):
TAAATTTAATGATAAAATA
Found at i:104059162 original size:13 final size:13
Alignment explanation
Indices: 104059144--104059180 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
104059134 CAAAAGCCTC
104059144 TCTTTTGTTTTTT
1 TCTTTTGTTTTTT
*
104059157 TCTTTTG-TCTTT
1 TCTTTTGTTTTTT
104059169 TCTTTT-TTTTTT
1 TCTTTTGTTTTTT
104059181 GGTAAAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 14 0.67
13 7 0.33
ACGTcount: A:0.00, C:0.11, G:0.05, T:0.84
Consensus pattern (13 bp):
TCTTTTGTTTTTT
Found at i:104062614 original size:17 final size:16
Alignment explanation
Indices: 104062594--104062628 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
104062584 TATTAATTAT
104062594 TATACTATATTTATGAA
1 TATACTATATTTAT-AA
*
104062611 TATATTATATTTATAA
1 TATACTATATTTATAA
104062627 TA
1 TA
104062629 GTGAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (16 bp):
TATACTATATTTATAA
Found at i:104062664 original size:24 final size:24
Alignment explanation
Indices: 104062632--104062684 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
104062622 TATAATAGTG
* *
104062632 AATTTTTAAAAAATATATATATAA
1 AATTTTTAAAAAATAAATAAATAA
*
104062656 CATTTTTAAAAAATAAATAAATAA
1 AATTTTTAAAAAATAAATAAATAA
104062680 AATTT
1 AATTT
104062685 CAAATTTAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
AATTTTTAAAAAATAAATAAATAA
Found at i:104066104 original size:51 final size:51
Alignment explanation
Indices: 104066036--104066143 Score: 137
Period size: 51 Copynumber: 2.1 Consensus size: 51
104066026 GCCCTCAAAG
* * *
104066036 TTTACACATTCTATCAATTCCGTCTTTGATTTAACAGATTTACCT-TCAACA
1 TTTACACATTCTATCAATTCAGTC-TTGATTTAACAAATTTACCTAGCAACA
* * * *
104066087 TTTACACATTTTGTCAATTTAGTCTTGATTTAACAAATTTAGCTAGCAACA
1 TTTACACATTCTATCAATTCAGTCTTGATTTAACAAATTTACCTAGCAACA
104066138 TTTACA
1 TTTACA
104066144 AACTATACCA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
50 18 0.37
51 31 0.63
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.42
Consensus pattern (51 bp):
TTTACACATTCTATCAATTCAGTCTTGATTTAACAAATTTACCTAGCAACA
Found at i:104067866 original size:22 final size:22
Alignment explanation
Indices: 104067834--104067882 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
104067824 ATAAAAAATT
104067834 TAAA-AATAATTTGTTAAATAA
1 TAAATAATAATTTGTTAAATAA
*
104067855 TAAATAATAATTTTTTAAATAA
1 TAAATAATAATTTGTTAAATAA
104067877 TAAATA
1 TAAATA
104067883 TTAACTCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
TAAATAATAATTTGTTAAATAA
Found at i:104068095 original size:8 final size:8
Alignment explanation
Indices: 104068084--104068108 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
104068074 TTTTAAATTT
104068084 TTTTTTTA
1 TTTTTTTA
104068092 TTTTTTTA
1 TTTTTTTA
104068100 TTTTTTTA
1 TTTTTTTA
104068108 T
1 T
104068109 AAATTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTTTA
Found at i:104071612 original size:20 final size:21
Alignment explanation
Indices: 104071559--104071612 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
104071549 AAATATCGTC
104071559 ATGTCTCGAGACAATGTTCCCT
1 ATGTCTCGAGACAATG-TCCCT
* *
104071581 ATCTCTCAAGACAATG-CCACT
1 ATGTCTCGAGACAATGTCC-CT
104071602 -TGTCTCGAGAC
1 ATGTCTCGAGAC
104071613 CCTGGACCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 11 0.41
21 2 0.07
22 14 0.52
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (21 bp):
ATGTCTCGAGACAATGTCCCT
Found at i:104072823 original size:18 final size:19
Alignment explanation
Indices: 104072794--104072833 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
104072784 TTTCTAATAG
104072794 TTTTTATAAATTTTAATCT
1 TTTTTATAAATTTTAATCT
*
104072813 TTTTTAT-AATTTTAATGT
1 TTTTTATAAATTTTAATCT
104072831 TTT
1 TTT
104072834 CTAAATTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTATAAATTTTAATCT
Found at i:104072840 original size:17 final size:17
Alignment explanation
Indices: 104072795--104072841 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
104072785 TTCTAATAGT
104072795 TTTTATAAATTTTAATC
1 TTTTATAAATTTTAATC
* *
104072812 TTTTTTATAATTTTAATG
1 TTTTATA-AATTTTAATC
*
104072830 TTTTCTAAATTT
1 TTTTATAAATTT
104072842 ACTTTTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTTATAAATTTTAATC
Found at i:104075131 original size:14 final size:15
Alignment explanation
Indices: 104075112--104075144 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
104075102 TTCCTTATGG
104075112 TTTTCTGTTTC-TTC
1 TTTTCTGTTTCTTTC
*
104075126 TTTTCTTTTTCTTTC
1 TTTTCTGTTTCTTTC
104075141 TTTT
1 TTTT
104075145 AATGTTAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTCTGTTTCTTTC
Found at i:104081122 original size:24 final size:24
Alignment explanation
Indices: 104081090--104081138 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
104081080 AGTTAACATA
*
104081090 ACTTTCAACTCTTGACCCGAACTT
1 ACTTTCAACTCTTGACCCAAACTT
104081114 ACTTTCAACTCTTGACCCAAACTT
1 ACTTTCAACTCTTGACCCAAACTT
104081138 A
1 A
104081139 AGAAATTAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.33, G:0.06, T:0.33
Consensus pattern (24 bp):
ACTTTCAACTCTTGACCCAAACTT
Found at i:104083675 original size:17 final size:18
Alignment explanation
Indices: 104083637--104083677 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
104083627 TGTTGAAAAT
* *
104083637 TTAAATTTATATATATTT
1 TTAAATTTATATAAATTA
104083655 TTAAATTT-TATAAATTA
1 TTAAATTTATATAAATTA
104083672 TTAAAT
1 TTAAAT
104083678 CAATATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAAATTTATATAAATTA
Found at i:104086733 original size:3 final size:3
Alignment explanation
Indices: 104086725--104086825 Score: 105
Period size: 3 Copynumber: 33.3 Consensus size: 3
104086715 TTTGTTAATT
*
104086725 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
* * * * *
104086771 TTA TCT- TTA CTA TTA TTG TTA GTA TTA TTA CTA CTA TTA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
104086816 CTA TCA TTA T
1 TTA TTA TTA T
104086826 ATTTATACCT
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
2 1 0.01
3 76 0.94
4 4 0.05
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:104087001 original size:36 final size:34
Alignment explanation
Indices: 104086961--104087029 Score: 86
Period size: 36 Copynumber: 2.0 Consensus size: 34
104086951 CATATTTTCG
104086961 TATATTTTATAA-TTTGTATATACATATACTTATATC
1 TATATTTTATAACTTT-TATA-A-ATATACTTATATC
* *
104086997 TATATTTTCTAACTTTTATAAATATATTTATAT
1 TATATTTTATAACTTTTATAAATATACTTATAT
104087030 GTACATACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 11 0.37
35 1 0.03
36 15 0.50
37 3 0.10
ACGTcount: A:0.36, C:0.07, G:0.01, T:0.55
Consensus pattern (34 bp):
TATATTTTATAACTTTTATAAATATACTTATATC
Found at i:104087149 original size:14 final size:14
Alignment explanation
Indices: 104087132--104087162 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
104087122 CTATTTACTC
*
104087132 TTTTTTATTTTTAT
1 TTTTTTATTATTAT
104087146 TTTTTTATTATTAT
1 TTTTTTATTATTAT
104087160 TTT
1 TTT
104087163 CAAATTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTATTATTAT
Found at i:104092727 original size:31 final size:31
Alignment explanation
Indices: 104092692--104092763 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
104092682 GTAAAAATGG
* *
104092692 TCAAATAAAGATTTAA-TATTTTTAAAAGTAC
1 TCAAATAAAGACTCAACT-TTTTTAAAAGTAC
* * *
104092723 TCAAATAATGGCTCAACTTTTTTAAAAGTGC
1 TCAAATAAAGACTCAACTTTTTTAAAAGTAC
104092754 TCAAATAAAG
1 TCAAATAAAG
104092764 GCTTTTCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 33 0.97
32 1 0.03
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.35
Consensus pattern (31 bp):
TCAAATAAAGACTCAACTTTTTTAAAAGTAC
Found at i:104094030 original size:25 final size:23
Alignment explanation
Indices: 104093993--104094053 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
104093983 ATTATAAATT
*
104093993 ATAAATTTCATTTTAATAGAAATCAA
1 ATAAATAT-ATTTTAAT-GAAAT-AA
* *
104094019 ATATATATATTTTTATGAAATAA
1 ATAAATATATTTTAATGAAATAA
*
104094042 GTAAATATATTT
1 ATAAATATATTT
104094054 AATTTTAAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 12 0.40
24 5 0.17
25 7 0.23
26 6 0.20
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (23 bp):
ATAAATATATTTTAATGAAATAA
Found at i:104094148 original size:18 final size:18
Alignment explanation
Indices: 104094125--104094164 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
104094115 AAAAATCGAC
* *
104094125 AAATAAAAATACATATAT
1 AAATAAAAATAAAGATAT
*
104094143 AAATAATAATAAAGATAT
1 AAATAAAAATAAAGATAT
104094161 AAAT
1 AAAT
104094165 TATTTTTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (18 bp):
AAATAAAAATAAAGATAT
Found at i:104098110 original size:29 final size:29
Alignment explanation
Indices: 104098077--104098134 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
104098067 GGGAATAATG
104098077 CCAAGCTAAAGGGAGAAGTAAACCATTAC
1 CCAAGCTAAAGGGAGAAGTAAACCATTAC
104098106 CCAAGCTAAAGGGAGAAGTAAACCATTAC
1 CCAAGCTAAAGGGAGAAGTAAACCATTAC
104098135 TCATATGTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.45, C:0.21, G:0.21, T:0.14
Consensus pattern (29 bp):
CCAAGCTAAAGGGAGAAGTAAACCATTAC
Done.