Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 325 of 343
Found at i:104679934 original size:41 final size:41
Alignment explanation
Indices: 104679877--104679956 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 41
104679867 TACTATTTTC
*
104679877 TTGCTTCTAAATTGATGAACATATTCTCTAGAACCTCTAAT
1 TTGCTTCTAAATTGATGAAAATATTCTCTAGAACCTCTAAT
104679918 TTGCTTCTAAATTGATGAAAATATTCTCTAGAACCTCTA
1 TTGCTTCTAAATTGATGAAAATATTCTCTAGAACCTCTA
104679957 CTTCATCTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.39
Consensus pattern (41 bp):
TTGCTTCTAAATTGATGAAAATATTCTCTAGAACCTCTAAT
Found at i:104680165 original size:22 final size:23
Alignment explanation
Indices: 104680134--104680176 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
104680124 ACTACCATTT
104680134 TCTAAATAAAA-AATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
104680156 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
104680177 ATAATATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:104684515 original size:9 final size:9
Alignment explanation
Indices: 104684480--104684515 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
104684470 TCAATTTTTT
104684480 TAAAAATT-
1 TAAAAATTA
104684488 TAAAAATTTA
1 TAAAAA-TTA
104684498 TAAAAATTA
1 TAAAAATTA
104684507 TAAAAATTA
1 TAAAAATTA
104684516 ATATTTAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 6 0.23
9 14 0.54
10 6 0.23
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
TAAAAATTA
Found at i:104684641 original size:14 final size:13
Alignment explanation
Indices: 104684623--104684647 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104684613 ATATTCAATA
104684623 AAAAAAATCTTAC
1 AAAAAAATCTTAC
104684636 AAAAAAATCTTA
1 AAAAAAATCTTA
104684648 AATAAGAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAAAAATCTTAC
Found at i:104684643 original size:29 final size:29
Alignment explanation
Indices: 104684611--104684667 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
104684601 TCAATATATC
*
104684611 AAATATTCAATAAAAAAAATCTTACAAAA
1 AAATATTAAATAAAAAAAATCTTACAAAA
* * * *
104684640 AAATCTTAAATAAGAAATATTTTACAAA
1 AAATATTAAATAAAAAAAATCTTACAAA
104684668 TTTTTTTTCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.28
Consensus pattern (29 bp):
AAATATTAAATAAAAAAAATCTTACAAAA
Found at i:104689950 original size:19 final size:19
Alignment explanation
Indices: 104689910--104689952 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
104689900 ATGCCCATAT
*
104689910 TTATTTTATCTAAATAAAA
1 TTATTTTATCTAAAAAAAA
*
104689929 TTATTTT-TTTAAAAAAATA
1 TTATTTTATCTAAAAAAA-A
104689948 TTATT
1 TTATT
104689953 AATAATAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
TTATTTTATCTAAAAAAAA
Found at i:104691066 original size:16 final size:17
Alignment explanation
Indices: 104691045--104691079 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
104691035 GACGTGAAAT
104691045 TAATAAAATAAATA-AA
1 TAATAAAATAAATATAA
*
104691061 TAATAATATAAATATAA
1 TAATAAAATAAATATAA
104691078 TA
1 TA
104691080 GCATTCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
TAATAAAATAAATATAA
Found at i:104693046 original size:15 final size:15
Alignment explanation
Indices: 104693026--104693061 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
104693016 CCTTGACACG
*
104693026 AATTCTTAATGAACA
1 AATTCTTAACGAACA
104693041 AATTCTTAACGAACA
1 AATTCTTAACGAACA
*
104693056 AGTTCT
1 AATTCT
104693062 CCACCTCTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (15 bp):
AATTCTTAACGAACA
Found at i:104698021 original size:51 final size:51
Alignment explanation
Indices: 104697945--104698064 Score: 177
Period size: 51 Copynumber: 2.4 Consensus size: 51
104697935 AACTAAGTTA
* *
104697945 TCCGGATAAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATTAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
* * *
104697996 TCCGGATGAAATATGAAGCTCTTGTTGAAGTTAGAGCAACAAGGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
* *
104698047 TCCAGATGAAGTATGAAG
1 TCCGGATGAAATATGAAG
104698065 TAAGTTTGAG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
Found at i:104703695 original size:12 final size:12
Alignment explanation
Indices: 104703678--104703707 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
104703668 AATAAAAATG
104703678 TAAAAAAATATA
1 TAAAAAAATATA
104703690 TAAAAAAATATA
1 TAAAAAAATATA
104703702 TAAAAA
1 TAAAAA
104703708 GTAAGTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
TAAAAAAATATA
Found at i:104706710 original size:133 final size:131
Alignment explanation
Indices: 104706535--104706907 Score: 355
Period size: 133 Copynumber: 2.8 Consensus size: 131
104706525 AAATATAAGC
* * *
104706535 AAATTTTTATAATAATATATATTTTACTTCTCATC-AGAGTGTGCCTAAAAAGAATAGAATATGC
1 AAATTTTTATAATAATATATATTTTACTTCTCATCGA-AGTGTGACTAAAAAG-TTAAAATATGC
* * * *
104706599 TCACTCATTTACCGACAAGGTATACATGACATGACATTTATCTCTGTATGACTCGAAAAA-ATAT
64 TCACTCATTTACAGACAAGGTATACATGACATGACATTTATCTCTGCACGAAT-GAAAAACATAT
* *
104706663 TAGT
128 CAAT
** * * * *
104706667 AGTTTTTTTATAATAATATATATTTTACCTCTCATCGAAGTGTGATTGAAAATGTTAAAATGTGC
1 A-AATTTTTATAATAATATATATTTTACTTCTCATCGAAGTGTGACT-AAAAAGTTAAAATATGC
** * *
104706732 TCACTCATTTATCAGTGAA-GTATACATGATATGACATTTATC-CTTGCACGAATTAAAAACATA
64 TCACTCATTTA-CAGACAAGGTATACATGACATGACATTTATCTC-TGCACGAATGAAAAACATA
104706795 TCAAT
127 TCAAT
* * ** * *
104706800 AAATTTTT-TAATAATAGATATTTTACTTGTCGGCGGAA-TGT-ATCTGAAAAGTTATAATATGC
1 AAATTTTTATAATAATATATATTTTACTTCTCATC-GAAGTGTGA-CTAAAAAGTTAAAATATGC
* ** *
104706862 TTACTCATTTATTGATAAGGTATACATGACATGACATTTATCTCTG
64 TCACTCATTTACAGACAAGGTATACATGACATGACATTTATCTCTG
104706908 GGTGGCTTGG
Statistics
Matches: 194, Mismatches: 37, Indels: 22
0.77 0.15 0.09
Matches are distributed among these distances:
129 3 0.02
130 48 0.25
131 26 0.13
132 15 0.08
133 92 0.47
134 10 0.05
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (131 bp):
AAATTTTTATAATAATATATATTTTACTTCTCATCGAAGTGTGACTAAAAAGTTAAAATATGCTC
ACTCATTTACAGACAAGGTATACATGACATGACATTTATCTCTGCACGAATGAAAAACATATCAA
T
Found at i:104708802 original size:18 final size:17
Alignment explanation
Indices: 104708779--104708840 Score: 52
Period size: 20 Copynumber: 3.3 Consensus size: 17
104708769 AAAAACTATG
104708779 TAAAATTATATAAATAAA
1 TAAAATTATATAAA-AAA
*
104708797 TAAAATGATAATAACAAGAA
1 TAAAATTAT-ATAA-AA-AA
*
104708817 TAAAATGTGTATAAAAAAA
1 TAAAAT-TATAT-AAAAAA
104708836 TAAAA
1 TAAAA
104708841 GTAATATTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
18 8 0.22
19 12 0.33
20 13 0.36
21 3 0.08
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.26
Consensus pattern (17 bp):
TAAAATTATATAAAAAA
Found at i:104708839 original size:19 final size:19
Alignment explanation
Indices: 104708787--104708840 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
104708777 TGTAAAATTA
*
104708787 TATAAATAAATAAAATGAT
1 TATAAAAAAATAAAATGAT
* *
104708806 AATAACAAGAATAAAATG-T
1 TATAA-AAAAATAAAATGAT
104708825 GTATAAAAAAATAAAA
1 -TATAAAAAAATAAAA
104708841 GTAATATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (19 bp):
TATAAAAAAATAAAATGAT
Found at i:104708881 original size:29 final size:27
Alignment explanation
Indices: 104708826--104708881 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
104708816 ATAAAATGTG
*
104708826 TATAAAAAAATAAAAGTAATATTAATA
1 TATAAAAAAATAAAAGTAATATGAATA
104708853 TATAAATATAAATAAAAGT-ATAATGAATA
1 TATAAA-A-AAATAAAAGTAAT-ATGAATA
104708882 GAAATGTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 6 0.24
28 3 0.12
29 16 0.64
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.30
Consensus pattern (27 bp):
TATAAAAAAATAAAAGTAATATGAATA
Found at i:104709029 original size:3 final size:3
Alignment explanation
Indices: 104709023--104709055 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
104709013 AAACAACAAC
104709023 AAT AAT AAT AAT AAT AAT AAT -AT CAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
104709056 GAAGATAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 24 0.86
4 2 0.07
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:104711198 original size:88 final size:87
Alignment explanation
Indices: 104711080--104711385 Score: 454
Period size: 88 Copynumber: 3.5 Consensus size: 87
104711070 TAGTTTTGAT
* *
104711080 CGCTTCAATGCCATTTCAGAGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGG
1 CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGG
*
104711145 AGATACAAATTGTGGCTTTGAGC
66 AGATAC-AACTGTGGCTTTGAGC
* * *
104711168 CGCTCTAGTGCCATTTCAGGGAAAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGG
1 CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGG
** *
104711233 AGAT-CTGCTGT-ACTTTGAGC
66 AGATACAACTGTGGCTTTGAGC
*
104711253 CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGG
1 CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGG
* *
104711318 AGATACGGACTGTGGCTTCGAGC
66 AGATAC-AACTGTGGCTTTGAGC
* *
104711341 CACTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCATCGATCT
1 CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCT
104711386 GTTCCACTAC
Statistics
Matches: 196, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
85 73 0.37
86 4 0.02
87 5 0.03
88 114 0.58
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (87 bp):
CGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGG
AGATACAACTGTGGCTTTGAGC
Found at i:104711652 original size:86 final size:86
Alignment explanation
Indices: 104711379--104712276 Score: 1094
Period size: 86 Copynumber: 10.4 Consensus size: 86
104711369 ATTTGTAGCA
* *
104711379 TCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
* *
104711444 GGGGGTTAAGTCCCA-TCGTCT
66 GGGGGTTAAGGCTCACT-GTCT
* * * *
104711465 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCTTGTTACCCTATTACT
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAA--TTCAGCCTGTTACCCTACTGCT
*
104711530 TAGGGGGTTAAGGCCCA-TCGTCT
64 TAGGGGGTTAAGGCTCACT-GTCT
* * * *
104711553 TCGATCTGCTCCACTACTTCTTAGGGAAACAAGATTTGTAATTTAGCCTGTTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
104711618 GGGGGTTAAGGCTCACTGTCT
66 GGGGGTTAAGGCTCACTGTCT
* * * *
104711639 TCAATCTGCTCCACTATTGCTTAGGGTGACAAGATCTGTAATTTAGCCTGTTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
*
104711704 GGGGGTTAAGGCTAACCT-TCT
66 GGGGGTTAAGGCTCA-CTGTCT
* *
104711725 TCGATCTGCTCCACTACTGCTTAGGGAAACAAGATCTGTAATTTAGCCTGTTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
104711790 GGGGGTTAAGGCTCACTGTCT
66 GGGGGTTAAGGCTCACTGTCT
* * *
104711811 TCGATCTGCTCCACTACTTCTTAGGGTGACAAGATCTGTAATTCAGCCTATTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
*
104711876 GGGGGTTAAGGCT-AATCGTCT
66 GGGGGTTAAGGCTCACT-GTCT
* * * * *
104711897 TCGATCTGCTCTATTACTACTTAGGGAGACAAGATCTGTAATTCGGCTTGTTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
* *
104711962 AGGGGTTAAGGCTCA-TCGTGT
66 GGGGGTTAAGGCTCACT-GTCT
* * * * * *
104711983 TCGATCTGGTCCGCTACTACTTAAGGAGACAAGATTTGTAATTCAGCCTGTTACCCTATTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
* * **
104712048 GAGGGTTAAGGCTAACCATCT
66 GGGGGTTAAGGCTCACTGTCT
* * * *
104712069 TCAATCTGCTCTACTACTGCTTAGGGAGACAAGATCTATAATTCGGCCTGTTACCCTACTGCTTA
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
104712134 GGGGGTTAAGGC-C-C-GTCACCT
66 GGGGGTTAAGGCTCACTGT---CT
* * * * * *
104712155 TCGATCTGTTCCCCTACTACTTAGGGTGATAAGATTTGTAAATTCAGCCTGTTACCCTACTGCTT
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGT-AATTCAGCCTGTTACCCTACTGCTT
* **
104712220 AGGGGGTTAAGGCCCA-TCACCT
65 AGGGGGTTAAGGCTCACT-GTCT
* * * * *
104712242 TCGATCTGTTCCCCTACTGTTTAGGGTGATAAGAT
1 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGAT
104712277 TTTACGAATT
Statistics
Matches: 711, Mismatches: 85, Indels: 31
0.86 0.10 0.04
Matches are distributed among these distances:
83 1 0.00
84 1 0.00
85 4 0.01
86 550 0.77
87 76 0.11
88 79 0.11
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.32
Consensus pattern (86 bp):
TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTA
GGGGGTTAAGGCTCACTGTCT
Found at i:104712170 original size:44 final size:44
Alignment explanation
Indices: 104712116--104712267 Score: 155
Period size: 44 Copynumber: 3.5 Consensus size: 44
104712106 ATAATTCGGC
104712116 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCGTCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCGTCACCTTCGAT
* * * * **** ** *
104712160 CTGTTCCCCTACTACTTAGGGTGATAAGATTTGT-AAATTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCGTCACCTTCGA-T
*
104712203 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCGTCACCTTCGAT
* *
104712247 CTGTTCCCCTACTGTTTAGGG
1 CTGTTACCCTACTGCTTAGGG
104712268 TGATAAGATT
Statistics
Matches: 80, Mismatches: 25, Indels: 6
0.72 0.23 0.05
Matches are distributed among these distances:
42 1 0.01
43 29 0.36
44 49 0.61
45 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.32
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCGTCACCTTCGAT
Found at i:104713634 original size:10 final size:10
Alignment explanation
Indices: 104713600--104713634 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
104713590 TGGCCTCTCC
104713600 TTTTTCTTTT
1 TTTTTCTTTT
* *
104713610 CTTTTCTTCT
1 TTTTTCTTTT
104713620 TTTTTCTTTT
1 TTTTTCTTTT
104713630 TTTTT
1 TTTTT
104713635 TGAAGGTCTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:104714287 original size:11 final size:11
Alignment explanation
Indices: 104714273--104714317 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
104714263 AGATAAATAT
104714273 TATTTTATTAA
1 TATTTTATTAA
*
104714284 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
104714297 TATTTTATTAT
1 TATTTTATTAA
104714308 TATTTTATTA
1 TATTTTATTA
104714318 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:104716501 original size:46 final size:46
Alignment explanation
Indices: 104716449--104716811 Score: 458
Period size: 46 Copynumber: 7.9 Consensus size: 46
104716439 GTGCTCTCTA
** *
104716449 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
104716495 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTA
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* ** * *
104716541 ATACGAAATGTGTAAGACCATGGTCGAAAGATACCATGGCGACCTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* ** * *
104716587 ATACGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACGTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
104716633 ATATGAAATGAATAAGACCATTGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
*** * *
104716679 ACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
104716725 ACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* * * *
104716771 ATA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCA
104716812 TCATGTCAAA
Statistics
Matches: 283, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 282 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:104717118 original size:16 final size:17
Alignment explanation
Indices: 104717097--104717129 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
104717087 ATGATGGAGC
104717097 ATGAAA-TATTGATATA
1 ATGAAATTATTGATATA
104717113 ATGAAATTATTGATATA
1 ATGAAATTATTGATATA
104717130 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
ATGAAATTATTGATATA
Found at i:104719901 original size:31 final size:32
Alignment explanation
Indices: 104719866--104719951 Score: 81
Period size: 31 Copynumber: 2.7 Consensus size: 32
104719856 ATGATGTTAG
*
104719866 AGATATTATGA-TATTTTA-TAAT-TATTTAATT
1 AGATATTAT-ATTATTTTATTAATAT-TTTAATA
*
104719897 AGATA-AATATTATTTTATTAATATTTTAATA
1 AGATATTATATTATTTTATTAATATTTTAATA
104719928 AGATATTTTATTATTATTTTATTA
1 AGATA--TTA-TATTATTTTATTA
104719952 GTATATAAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
29 1 0.02
30 9 0.20
31 20 0.44
32 1 0.02
34 1 0.02
35 13 0.29
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (32 bp):
AGATATTATATTATTTTATTAATATTTTAATA
Found at i:104719921 original size:11 final size:11
Alignment explanation
Indices: 104719907--104719951 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
104719897 AGATAAATAT
104719907 TATTTTATTAA
1 TATTTTATTAA
*
104719918 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
104719931 TATTTTATTAT
1 TATTTTATTAA
104719942 TATTTTATTA
1 TATTTTATTA
104719952 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:104722102 original size:46 final size:46
Alignment explanation
Indices: 104722052--104722279 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
104722042 GCTCTCTGAT
* * * *
104722052 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
104722098 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
104722144 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
104722190 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
104722236 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
104722280 TCAAAGATAA
Statistics
Matches: 165, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 164 0.99
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:104726363 original size:19 final size:19
Alignment explanation
Indices: 104726339--104726384 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
104726329 GGGAAATTCT
104726339 AATGCAAATG-ATGCAATG
1 AATGCAAATGTATGCAATG
*
104726357 CAATGCAAATGTATGGAATG
1 -AATGCAAATGTATGCAATG
104726377 AATGCAAA
1 AATGCAAA
104726385 AGAAAGGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.22
Consensus pattern (19 bp):
AATGCAAATGTATGCAATG
Found at i:104728707 original size:18 final size:18
Alignment explanation
Indices: 104728640--104728700 Score: 72
Period size: 18 Copynumber: 3.3 Consensus size: 18
104728630 AAAAACTATG
104728640 TAAAA-GTATATAAATAAA
1 TAAAATGTATATAAA-AAA
104728658 TAAAATG-ATAATAACAAGAA
1 TAAAATGTAT-ATAA-AA-AA
104728678 TAAAATGTATATAAAAAA
1 TAAAATGTATATAAAAAA
104728696 TAAAA
1 TAAAA
104728701 GTAATATTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
18 14 0.37
19 8 0.21
20 14 0.37
21 2 0.05
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (18 bp):
TAAAATGTATATAAAAAA
Found at i:104728768 original size:27 final size:27
Alignment explanation
Indices: 104728716--104728768 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
104728706 ATTAATACAT
** *
104728716 AAATATAAATAGAAGTATAATGAATAG
1 AAATATAAATAGAAACATAATAAATAG
104728743 AAATAT-AATAGAAACATAAATAAATA
1 AAATATAAATAGAAACAT-AATAAATA
104728769 ATTAAAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (27 bp):
AAATATAAATAGAAACATAATAAATAG
Found at i:104728853 original size:3 final size:3
Alignment explanation
Indices: 104728827--104728921 Score: 88
Period size: 3 Copynumber: 31.7 Consensus size: 3
104728817 GAATATAAAT
* * * * * *
104728827 ATA ATA CTA ATA GTA ATA AT- ATA ATA ATG ACA ATA GTA ACAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
104728872 ATA ATA ATA ATA ATA ATA ATA ATA AT- ATCA ATA ATA AT- ATCA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA AT-A ATA
104728917 ATA AT
1 ATA AT
104728922 GAAGATAACA
Statistics
Matches: 74, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
2 6 0.08
3 62 0.84
4 6 0.08
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:104731591 original size:20 final size:20
Alignment explanation
Indices: 104731554--104731591 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
104731544 GCTTAGAGTT
* *
104731554 TTTTTTTTTCAATTAGGCCC
1 TTTTTTTTTAAATCAGGCCC
104731574 TTTTTTTTTAAATCAGGC
1 TTTTTTTTTAAATCAGGC
104731592 TCAATCCAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.16, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTTTTTTAAATCAGGCCC
Found at i:104733654 original size:35 final size:34
Alignment explanation
Indices: 104733614--104733692 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 34
104733604 CATAAAAATT
104733614 ATATAAAAAAAGAAAATA-TTA-AAATTAATATAAA
1 ATATAAAAAAAGAAAA-ACTTATAAA-TAATATAAA
* * *
104733648 ATTATAAAAATATAAAAACTTATAAATATTATAAA
1 A-TATAAAAAAAGAAAAACTTATAAATAATATAAA
104733683 ATATAAAAAA
1 ATATAAAAAA
104733693 TAATAATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
34 10 0.26
35 25 0.66
36 3 0.08
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (34 bp):
ATATAAAAAAAGAAAAACTTATAAATAATATAAA
Found at i:104733656 original size:27 final size:25
Alignment explanation
Indices: 104733599--104733710 Score: 98
Period size: 27 Copynumber: 4.2 Consensus size: 25
104733589 AATGGTTAAA
** *
104733599 AAAATCATAAAAATTATATAAAAAAAG
1 AAAAT-ATAAAAATTATA-AAAATTAT
*
104733626 AAAATATTAAAATTAATATAAAATTAT
1 AAAATATAAAAATT-ATA-AAAATTAT
*
104733653 AAAAATATAAAAACTTATAAATATTAT
1 -AAAATATAAAAA-TTATAAAAATTAT
*
104733680 AAAATATAAAAAATAATAATAAATTAT
1 AAAATAT-AAAAATTATAA-AAATTAT
104733707 AAAA
1 AAAA
104733711 GGAAATTTAT
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
26 20 0.28
27 36 0.50
28 14 0.19
29 2 0.03
ACGTcount: A:0.68, C:0.02, G:0.01, T:0.29
Consensus pattern (25 bp):
AAAATATAAAAATTATAAAAATTAT
Found at i:104733671 original size:26 final size:26
Alignment explanation
Indices: 104733642--104733710 Score: 86
Period size: 26 Copynumber: 2.6 Consensus size: 26
104733632 TTAAAATTAA
*
104733642 TATAAAATTATAAAAATATAAAAACT
1 TATAAAATTATAAAAATATAAAAAAT
104733668 TATAAATATTAT-AAAATATAAAAAAT
1 TATAAA-ATTATAAAAATATAAAAAAT
*
104733694 AATAATAAATTATAAAA
1 TAT-A-AAATTATAAAA
104733711 GGAAATTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
26 21 0.57
27 11 0.30
28 5 0.14
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (26 bp):
TATAAAATTATAAAAATATAAAAAAT
Found at i:104733684 original size:10 final size:9
Alignment explanation
Indices: 104733598--104733710 Score: 76
Period size: 9 Copynumber: 12.4 Consensus size: 9
104733588 AAATGGTTAA
*
104733598 AAAAATCAT
1 AAAAATTAT
104733607 AAAAATTAT
1 AAAAATTAT
104733616 ATAAAA--A-
1 A-AAAATTAT
*
104733623 AAGAAAATAT
1 AA-AAATTAT
*
104733633 TAAAATTAAT
1 AAAAATT-AT
104733643 ATAAAATTAT
1 A-AAAATTAT
104733653 AAAAA-TAT
1 AAAAATTAT
104733661 AAAAACTTAT
1 AAAAA-TTAT
*
104733671 AAATATTAT
1 AAAAATTAT
104733680 -AAAA-TAT
1 AAAAATTAT
*
104733687 AAAAAATAAT
1 -AAAAATTAT
104733697 AATAAATTAT
1 AA-AAATTAT
104733707 AAAA
1 AAAA
104733711 GGAAATTTAT
Statistics
Matches: 83, Mismatches: 8, Indels: 26
0.71 0.07 0.22
Matches are distributed among these distances:
6 1 0.01
7 7 0.08
8 12 0.14
9 30 0.36
10 27 0.33
11 6 0.07
ACGTcount: A:0.68, C:0.02, G:0.01, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Found at i:104734439 original size:8 final size:9
Alignment explanation
Indices: 104734427--104734482 Score: 58
Period size: 9 Copynumber: 6.0 Consensus size: 9
104734417 TTTTATGATT
104734427 TTTTTATAA
1 TTTTTATAA
*
104734436 TTTTTGTAA
1 TTTTTATAA
104734445 TTTTATATAAA
1 TTTT-TAT-AA
* *
104734456 TTTTAATAC
1 TTTTTATAA
*
104734465 TTTTTATGA
1 TTTTTATAA
104734474 TTTTTATAA
1 TTTTTATAA
104734483 AAATTTTAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
9 27 0.73
10 4 0.11
11 6 0.16
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:104741019 original size:7 final size:7
Alignment explanation
Indices: 104741007--104741066 Score: 93
Period size: 7 Copynumber: 8.6 Consensus size: 7
104740997 GCTTCCACGT
104741007 GAACTTG
1 GAACTTG
104741014 GAACTTG
1 GAACTTG
104741021 GAACTTG
1 GAACTTG
104741028 GAACTTG
1 GAACTTG
*
104741035 GAAGTTG
1 GAACTTG
*
104741042 GAAGTTG
1 GAACTTG
*
104741049 GAAGTTG
1 GAACTTG
104741056 GAACTTG
1 GAACTTG
104741063 GAAC
1 GAAC
104741067 CAGCTTTCCA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 51 1.00
ACGTcount: A:0.30, C:0.10, G:0.33, T:0.27
Consensus pattern (7 bp):
GAACTTG
Found at i:104742841 original size:70 final size:70
Alignment explanation
Indices: 104742728--104742868 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
104742718 AAAGGTTAAG
*
104742728 GCTTTAGATTTATGTAAGTTATGTGTGAATGTGTTAGTTTGAGTTTGTTGATATAAAGAAGTGGC
1 GCTTTAGATTTATGTAAGCTATGTGTGAATGTGTTAGTTTGAGTTTGTTGATATAAAGAAGTGGC
104742793 TTAGA
66 TTAGA
104742798 GCTTTAGATTTATGTAAGCTATGTGTGAATGTGTTAGTTTGAGTTTGTTGATATAAAGAAGTGGC
1 GCTTTAGATTTATGTAAGCTATGTGTGAATGTGTTAGTTTGAGTTTGTTGATATAAAGAAGTGGC
104742863 TTAGA
66 TTAGA
104742868 G
1 G
104742869 GCTACGGATA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.27, C:0.04, G:0.28, T:0.42
Consensus pattern (70 bp):
GCTTTAGATTTATGTAAGCTATGTGTGAATGTGTTAGTTTGAGTTTGTTGATATAAAGAAGTGGC
TTAGA
Found at i:104748059 original size:25 final size:25
Alignment explanation
Indices: 104748024--104748078 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
104748014 CGGTTAAAGA
*
104748024 ATTCGCGCACATAGTGCCTCA-ATTC
1 ATTCGCACACATAGTGCCT-ATATTC
*
104748049 ATTCGCACACATAGTGTCTATATTC
1 ATTCGCACACATAGTGCCTATATTC
104748074 ATTCG
1 ATTCG
104748079 TTATTACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (25 bp):
ATTCGCACACATAGTGCCTATATTC
Found at i:104748307 original size:40 final size:40
Alignment explanation
Indices: 104748242--104748442 Score: 330
Period size: 40 Copynumber: 5.0 Consensus size: 40
104748232 GATTACACGT
* * * *
104748242 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATATGA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
104748282 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
104748322 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
104748362 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
104748402 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
104748442 C
1 C
104748443 TCTCAATTCT
Statistics
Matches: 152, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 152 1.00
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:104753642 original size:25 final size:25
Alignment explanation
Indices: 104753607--104753661 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
104753597 CGGTTAAAGA
*
104753607 ATTCGCGCACATAGTGCCTCA-ATTC
1 ATTCGCACACATAGTGCCT-ATATTC
*
104753632 ATTCGCACACATAGTGTCTATATTC
1 ATTCGCACACATAGTGCCTATATTC
104753657 ATTCG
1 ATTCG
104753662 TTATTACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (25 bp):
ATTCGCACACATAGTGCCTATATTC
Found at i:104753889 original size:40 final size:40
Alignment explanation
Indices: 104753824--104754024 Score: 312
Period size: 40 Copynumber: 5.0 Consensus size: 40
104753814 GATTACACGT
* * * *
104753824 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATATGA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
104753864 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
104753904 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
104753944 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
104753984 GACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
104754024 C
1 C
104754025 TCTCAATTCT
Statistics
Matches: 149, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 149 1.00
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:104769349 original size:27 final size:27
Alignment explanation
Indices: 104769315--104769368 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
104769305 ATAGACATAC
104769315 TGATACATTGATAGCAGCGAACCCTGA
1 TGATACATTGATAGCAGCGAACCCTGA
104769342 TGATACATTGATAGCAGCGAACCCTGA
1 TGATACATTGATAGCAGCGAACCCTGA
104769369 ATTTGGTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (27 bp):
TGATACATTGATAGCAGCGAACCCTGA
Found at i:104786005 original size:10 final size:10
Alignment explanation
Indices: 104785978--104786025 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
104785968 TTAAATTCTA
*
104785978 AAAGATAAAT
1 AAAGATAATT
104785988 ACAA-ATAATT
1 A-AAGATAATT
*
104785998 AAATATAATT
1 AAAGATAATT
*
104786008 AAAGATAATA
1 AAAGATAATT
104786018 AAAGATAA
1 AAAGATAA
104786026 ATGAAAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 2 0.06
10 29 0.88
11 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (10 bp):
AAAGATAATT
Found at i:104786035 original size:20 final size:19
Alignment explanation
Indices: 104785976--104786035 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 19
104785966 AATTAAATTC
104785976 TAAAAGATAAATACAAATAA
1 TAAAAGATAAATA-AAATAA
* * *
104785996 TTAAATATAATTAAAGATAA
1 TAAAAGATAAATAAA-ATAA
104786016 TAAAAGATAAATGAAAATAA
1 TAAAAGATAAAT-AAAATAA
104786036 ATCCTAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
19 2 0.06
20 27 0.84
21 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (19 bp):
TAAAAGATAAATAAAATAA
Found at i:104786630 original size:4 final size:4
Alignment explanation
Indices: 104786623--104786655 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
104786613 TTTTTCTTTT
*
104786623 TTAA TTAA TT-T TTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
104786656 TTTGCTTAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
3 2 0.08
4 24 0.92
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (4 bp):
TTAA
Found at i:104787902 original size:20 final size:21
Alignment explanation
Indices: 104787879--104787931 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 21
104787869 ACCCAAACAA
104787879 AATAAAGTAATAAATAATAAAATAA
1 AATAAA-TAA-AAAT-A-AAAATAA
104787904 AATAAATAAAAATAAAAATAAA
1 AATAAATAAAAATAAAAAT-AA
104787926 AATAAA
1 AATAAA
104787932 AATTGGGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 5 0.19
22 9 0.33
23 4 0.15
24 3 0.11
25 6 0.22
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (21 bp):
AATAAATAAAAATAAAAATAA
Found at i:104787913 original size:21 final size:21
Alignment explanation
Indices: 104787877--104787931 Score: 69
Period size: 20 Copynumber: 2.6 Consensus size: 21
104787867 TCACCCAAAC
*
104787877 AAAATAAAGT-AATAAATAAT-
1 AAAATAAAATAAATAAA-AATA
104787897 AAAATAAAATAAATAAAAATA
1 AAAATAAAATAAATAAAAATA
104787918 AAAATAAAAATAAA
1 AAAAT-AAAATAAA
104787932 AATTGGGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 12 0.39
21 11 0.35
22 8 0.26
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (21 bp):
AAAATAAAATAAATAAAAATA
Found at i:104787918 original size:6 final size:6
Alignment explanation
Indices: 104787877--104787934 Score: 62
Period size: 6 Copynumber: 8.8 Consensus size: 6
104787867 TCACCCAAAC
*
104787877 AAAATA AAGTAATA AATAATA AAATAAA ATAAATA AAAATA AAAATA AAAATA
1 AAAATA AA--AATA AA-AATA AAA-ATA A-AAATA AAAATA AAAATA AAAATA
104787930 AAAAT
1 AAAAT
104787935 TGGGTTGCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
6 25 0.54
7 13 0.28
8 8 0.17
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.21
Consensus pattern (6 bp):
AAAATA
Found at i:104792030 original size:131 final size:131
Alignment explanation
Indices: 104791796--104792132 Score: 541
Period size: 131 Copynumber: 2.6 Consensus size: 131
104791786 TAATTATTCA
* * *
104791796 TTTAAAAATTCTTAAAAATGAAGGAAATGTTCGATGTTTGGCAATTCGGGAAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * *
104791861 GTGCTAGGTTGCGATTTCCCGTTCATTCAAAACAATCGATTATTCCTTTGGGATTTCACTCATGT
66 GTGCTGGGTTGCGATTTCCCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCACTCATGT
104791926 C
131 C
* *
104791927 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTTGGGGAATCGTGCCTTATC
1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * *
104791992 GTGCTGGGTTGCGATTTCTCGTTCGTTCAAAACAATCGAATATTCCTTTGGAATTTTAGTCATGT
66 GTGCTGGGTTGCGATTTCCCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCACTCATGT
104792057 C
131 C
*
104792058 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCTA-C
1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
104792122 TGTGCTGGGTT
66 -GTGCTGGGTT
104792133 TTGATTTTTC
Statistics
Matches: 190, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
130 1 0.01
131 189 0.99
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (131 bp):
TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCGATTTCCCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCACTCATGT
C
Found at i:104796489 original size:14 final size:13
Alignment explanation
Indices: 104796453--104796489 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
104796443 AAAATTAAAT
104796453 CTAAATAATTATC
1 CTAAATAATTATC
*
104796466 CTTAATAATTATC
1 CTAAATAATTATC
104796479 CTAATATAATT
1 CTAA-ATAATT
104796490 GGAATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:104801595 original size:16 final size:17
Alignment explanation
Indices: 104801572--104801614 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
104801562 TCTATAATGC
*
104801572 ATTATAAATTATATAAT
1 ATTATAAATAATATAAT
104801589 A-TATAAAGATAATATAAT
1 ATTAT-AA-ATAATATAAT
104801607 ATTATAAA
1 ATTATAAA
104801615 CTAGAAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
16 3 0.14
17 4 0.18
18 12 0.55
19 3 0.14
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
ATTATAAATAATATAAT
Found at i:104802279 original size:14 final size:14
Alignment explanation
Indices: 104802260--104802287 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
104802250 ATTGGACTAC
104802260 TTAATTATTATAAT
1 TTAATTATTATAAT
104802274 TTAATTATTATAAT
1 TTAATTATTATAAT
104802288 ATTGAATGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTAATTATTATAAT
Found at i:104804223 original size:19 final size:19
Alignment explanation
Indices: 104804199--104804260 Score: 63
Period size: 19 Copynumber: 3.1 Consensus size: 19
104804189 TTTGGTTCAG
104804199 ACTTTCAATTGGTTGCTTT
1 ACTTTCAATTGGTTGCTTT
* *
104804218 ACTTTCAA-TGGCTTTGGTTGAC
1 ACTTTCAATTGG--TTGCTT--T
104804240 ACTTTCAATTGGTTGCTTT
1 ACTTTCAATTGGTTGCTTT
104804259 AC
1 AC
104804261 ATTTAAGTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
18 3 0.09
19 10 0.29
20 5 0.15
21 5 0.15
22 8 0.24
23 3 0.09
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.47
Consensus pattern (19 bp):
ACTTTCAATTGGTTGCTTT
Found at i:104804244 original size:41 final size:41
Alignment explanation
Indices: 104804183--104804260 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
104804173 AGGCAATTCT
*
104804183 AATGGCTTTGGTTCAGACTTTCAATTGGTTGCTTTACTTTC
1 AATGGCTTTGGTTCACACTTTCAATTGGTTGCTTTACTTTC
*
104804224 AATGGCTTTGGTTGACACTTTCAATTGGTTGCTTTAC
1 AATGGCTTTGGTTCACACTTTCAATTGGTTGCTTTAC
104804261 ATTTAAGTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.18, C:0.17, G:0.21, T:0.45
Consensus pattern (41 bp):
AATGGCTTTGGTTCACACTTTCAATTGGTTGCTTTACTTTC
Found at i:104812871 original size:18 final size:18
Alignment explanation
Indices: 104812850--104812891 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
104812840 TAATGCTAAC
*
104812850 AATAACCA-TAAACATAGT
1 AATAACCATTAAA-ATAAT
*
104812868 AATAACGATTAAAATAAT
1 AATAACCATTAAAATAAT
104812886 AATAAC
1 AATAAC
104812892 AACAACAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.24
Consensus pattern (18 bp):
AATAACCATTAAAATAAT
Found at i:104813100 original size:3 final size:3
Alignment explanation
Indices: 104813092--104813252 Score: 111
Period size: 3 Copynumber: 54.3 Consensus size: 3
104813082 TAGTACCATG
* *
104813092 ATA ATA ATA AAA ATA ATA ATA ATA ATA A-A ATA ATA AAA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
104813138 ATG TTA CTA ATA ATA ATA ATA ATA ATAA ATAA ATA ATG GTA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A ATA ATA ATA ATA ATA
* * *
104813184 TATA TATA A-A ATA ATA GTA ACA GTA ATA A-A ATA A-A TATA AT- ATA
1 -ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * *
104813228 ATA ATA ATA AAA ATA TTA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
104813253 CACTCTCCCC
Statistics
Matches: 124, Mismatches: 24, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
2 12 0.10
3 99 0.80
4 13 0.10
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:104813124 original size:26 final size:26
Alignment explanation
Indices: 104813094--104813252 Score: 103
Period size: 26 Copynumber: 5.9 Consensus size: 26
104813084 GTACCATGAT
104813094 AATAATAAAAATAATAATAATAATAA
1 AATAATAAAAATAATAATAATAATAA
** *
104813120 AATAATAAAAATAATAAT-ATGTTACT
1 AATAATAAAAATAATAATAATAATA-A
*
104813146 AATAATAATAATAATAATAAATAAATAA
1 AATAATAAAAATAATAAT-AAT-AATAA
** *
104813174 TGGTAATAAATATATATAA-AATAATAGTA
1 -AATAATAAAAATA-ATAATAATAATA--A
104813203 ACAGTAAT-AAAATAA-ATATAAT-ATAA
1 A-A-TAATAAAAATAATA-ATAATAATAA
* *
104813229 TAATAATAAAAATATTAAAAATAA
1 -AATAATAAAAATAATAATAATAA
104813253 CACTCTCCCC
Statistics
Matches: 101, Mismatches: 16, Indels: 31
0.68 0.11 0.21
Matches are distributed among these distances:
25 8 0.08
26 47 0.47
27 8 0.08
28 10 0.10
29 20 0.20
30 8 0.08
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (26 bp):
AATAATAAAAATAATAATAATAATAA
Found at i:104815361 original size:21 final size:22
Alignment explanation
Indices: 104815317--104815362 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
104815307 ACTTTCTAAG
**
104815317 TTATTTGATTTTTTTATTTTAA
1 TTATTTGATTTTTTTATTAAAA
*
104815339 TTATTT-ATTTTTTTGTTAAAA
1 TTATTTGATTTTTTTATTAAAA
104815360 TTA
1 TTA
104815363 ATGTTGGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (22 bp):
TTATTTGATTTTTTTATTAAAA
Found at i:104821107 original size:5 final size:5
Alignment explanation
Indices: 104821097--104821128 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
104821087 TTACTGTGAA
104821097 AAAAT AAAAT AAAAT -AAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
104821129 GACCACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:104821117 original size:14 final size:14
Alignment explanation
Indices: 104821098--104821128 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
104821088 TACTGTGAAA
104821098 AAATAAAATAAAAT
1 AAATAAAATAAAAT
104821112 AAATAAAATAAAAT
1 AAATAAAATAAAAT
104821126 AAA
1 AAA
104821129 GACCACACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:104827899 original size:26 final size:26
Alignment explanation
Indices: 104827853--104827905 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
104827843 TCAAACATGC
*
104827853 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
104827879 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
104827905 A
1 A
104827906 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:104829427 original size:26 final size:26
Alignment explanation
Indices: 104829392--104829499 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
104829382 TGAAATTCCC
*
104829392 ATCATAGAACATTTACCTAAACCATT
1 ATCATAGAACATTTACCTAACCCATT
*
104829418 ATCATGGAACATTTACCTAACCCATT
1 ATCATAGAACATTTACCTAACCCATT
* *
104829444 ATCATAGAATATTTACCTAATCCATT
1 ATCATAGAACATTTACCTAACCCATT
104829470 ATCAT-GAAACATTTACCTAACCCATT
1 ATCATAG-AACATTTACCTAACCCATT
104829496 ATCA
1 ATCA
104829500 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
25 1 0.01
26 73 0.99
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (26 bp):
ATCATAGAACATTTACCTAACCCATT
Found at i:104829469 original size:52 final size:52
Alignment explanation
Indices: 104829392--104829499 Score: 189
Period size: 52 Copynumber: 2.1 Consensus size: 52
104829382 TGAAATTCCC
*
104829392 ATCATAGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATAGAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCATT
* *
104829444 ATCATAGAATATTTACCTAATCCATTATCATGAAACATTTACCTAACCCATT
1 ATCATAGAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCATT
104829496 ATCA
1 ATCA
104829500 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (52 bp):
ATCATAGAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCATT
Found at i:104833117 original size:24 final size:24
Alignment explanation
Indices: 104833105--104833178 Score: 81
Period size: 24 Copynumber: 3.4 Consensus size: 24
104833095 ATCTTATTTT
104833105 TTAT-TTATTTATATAATTATTCA
1 TTATATTATTTATATAATTATTCA
* *
104833128 TTATATTATTTATATTATTATACA
1 TTATATTATTTATATAATTATTCA
104833152 -T-T-TTATTTATA-AATT-TT-A
1 TTATATTATTTATATAATTATTCA
104833170 TTATATTAT
1 TTATATTAT
104833179 ATATTTTACT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
18 1 0.02
19 2 0.05
20 4 0.09
21 13 0.30
22 1 0.02
23 5 0.12
24 17 0.40
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (24 bp):
TTATATTATTTATATAATTATTCA
Found at i:104833156 original size:17 final size:15
Alignment explanation
Indices: 104833108--104833186 Score: 60
Period size: 17 Copynumber: 5.3 Consensus size: 15
104833098 TTATTTTTTA
104833108 TTTATTTA-TATAA-
1 TTTATTTATTATAAT
* *
104833121 -TTATTCATTATATT
1 TTTATTTATTATAAT
104833135 ATTTATATTATTATACAT
1 -TTTAT-TTATTATA-AT
104833153 TTTATTTA-TA-AAT
1 TTTATTTATTATAAT
104833166 TTTATTATATTATATAT
1 TTTATT-TATTATA-AT
104833183 TTTA
1 TTTA
104833187 CTACGTATAT
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
12 6 0.12
13 12 0.23
14 3 0.06
15 4 0.08
16 8 0.15
17 18 0.35
18 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTATTTATTATAAT
Found at i:104833178 original size:21 final size:22
Alignment explanation
Indices: 104833105--104833178 Score: 75
Period size: 21 Copynumber: 3.4 Consensus size: 22
104833095 ATCTTATTTT
104833105 TTAT-TTATTTATATAATTATTCA
1 TTATATTATTTATA-AATTATT-A
104833128 TTATATTATTTAT--ATTATTA
1 TTATATTATTTATAAATTATTA
* *
104833148 TACATTTTATTTATAAATT-TTA
1 T-TATATTATTTATAAATTATTA
104833170 TTATATTAT
1 TTATATTAT
104833179 ATATTTTACT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
20 2 0.05
21 22 0.51
22 4 0.09
23 7 0.16
24 8 0.19
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (22 bp):
TTATATTATTTATAAATTATTA
Found at i:104835977 original size:24 final size:25
Alignment explanation
Indices: 104835940--104835986 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
104835930 AATTGAGCCG
*
104835940 AGTGAAATGAATTCAATTTAAATCA
1 AGTGAAATGAATTCAAGTTAAATCA
* *
104835965 AGTGAAAT-TATTCGAGTTAAAT
1 AGTGAAATGAATTCAAGTTAAAT
104835987 TTAAAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.34
Consensus pattern (25 bp):
AGTGAAATGAATTCAAGTTAAATCA
Found at i:104836493 original size:11 final size:11
Alignment explanation
Indices: 104836479--104836524 Score: 58
Period size: 11 Copynumber: 4.3 Consensus size: 11
104836469 TACCCATTCT
104836479 TTGCCCATACC
1 TTGCCCATACC
*
104836490 TTGCTCATACC
1 TTGCCCATACC
*
104836501 TTTCCCATACC
1 TTGCCCATACC
*
104836512 -TACCCATACC
1 TTGCCCATACC
104836522 TTG
1 TTG
104836525 GAAAGGTCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
10 9 0.31
11 20 0.69
ACGTcount: A:0.20, C:0.41, G:0.07, T:0.33
Consensus pattern (11 bp):
TTGCCCATACC
Found at i:104837086 original size:18 final size:18
Alignment explanation
Indices: 104837063--104837130 Score: 82
Period size: 18 Copynumber: 3.8 Consensus size: 18
104837053 CATTTACGGT
*
104837063 ACTATTCACATATATGGC
1 ACTATTCACGTATATGGC
* *
104837081 ACTATTCACGTATACGGT
1 ACTATTCACGTATATGGC
***
104837099 ACTATTCACGTATATAAT
1 ACTATTCACGTATATGGC
104837117 ACTATTCACGTATA
1 ACTATTCACGTATA
104837131 CGGTAGTTGG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (18 bp):
ACTATTCACGTATATGGC
Found at i:104837097 original size:36 final size:36
Alignment explanation
Indices: 104837057--104837135 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
104837047 TAAGACCATT
**
104837057 TACGGTACTATTCACATATATGGCACTATTCACGTA
1 TACGGTACTATTCACATATATAACACTATTCACGTA
* *
104837093 TACGGTACTATTCACGTATATAATACTATTCACGTA
1 TACGGTACTATTCACATATATAACACTATTCACGTA
104837129 TACGGTA
1 TACGGTA
104837136 GTTGGGATTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (36 bp):
TACGGTACTATTCACATATATAACACTATTCACGTA
Found at i:104844175 original size:6 final size:6
Alignment explanation
Indices: 104844164--104844238 Score: 82
Period size: 6 Copynumber: 12.7 Consensus size: 6
104844154 CCAATCTTTC
* * *
104844164 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTAT- TTTTTC CTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
104844211 TTATTTA TTATTA TTATTA -TTTTA TTTT
1 TT-TTTA TTTTTA TTTTTA TTTTTA TTTT
104844239 AGTTAAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
5 8 0.14
6 45 0.76
7 6 0.10
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:104844428 original size:43 final size:42
Alignment explanation
Indices: 104844346--104844436 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 42
104844336 TCCATGCTGT
* * **
104844346 CAAACAGTTCTATTCCAGCCCAGAATGCCATATCTCTGCAGC
1 CAAACAGTCCTATTCCAGCCCAGAATCCCATAAATCTGCAGC
*
104844388 CAAACAGTCCTATTCCAGCCTTAGAATCCCCA-AAATCTGCAGC
1 CAAACAGTCCTATTCCAGCC-CAGAAT-CCCATAAATCTGCAGC
104844431 CAAACA
1 CAAACA
104844437 CCCCTTTTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 19 0.45
43 20 0.48
44 3 0.07
ACGTcount: A:0.33, C:0.34, G:0.12, T:0.21
Consensus pattern (42 bp):
CAAACAGTCCTATTCCAGCCCAGAATCCCATAAATCTGCAGC
Found at i:104845102 original size:21 final size:21
Alignment explanation
Indices: 104845086--104845140 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
104845076 AATTTTGAAG
104845086 CACGAAATTTTTTTTTTAAAA
1 CACGAAATTTTTTTTTTAAAA
* * *
104845107 AATGAAAGTTTTTTTTTAAAA
1 CACGAAATTTTTTTTTTAAAA
104845128 CACGAGAATTTTT
1 CACGA-AATTTTT
104845141 AAACACGGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.45
Consensus pattern (21 bp):
CACGAAATTTTTTTTTTAAAA
Found at i:104845141 original size:17 final size:17
Alignment explanation
Indices: 104845119--104845547 Score: 218
Period size: 17 Copynumber: 24.8 Consensus size: 17
104845109 TGAAAGTTTT
*
104845119 TTTTTAAAACACGAGAA
1 TTTTTAAAACACGAAAA
*
104845136 TTTTT-AAACACGGAAA
1 TTTTTAAAACACGAAAA
**
104845152 TTTCAAAAACACGAAAA
1 TTTTTAAAACACGAAAA
**
104845169 TTTTTAAAACACGACATT
1 TTTTTAAAACACGA-AAA
* *
104845187 TTTTTGAAACACGAGAA
1 TTTTTAAAACACGAAAA
* * *
104845204 TTTTTAAAACAAGACAT
1 TTTTTAAAACACGAAAA
* **
104845221 TTTTTGAAACAC-AATT
1 TTTTTAAAACACGAAAA
**
104845237 TTTTTCTTAA-A--AAAA
1 TTTTT-AAAACACGAAAA
* *
104845252 --TTTAAAATACGAGAA
1 TTTTTAAAACACGAAAA
104845267 TTTTTAAAACACGAAAA
1 TTTTTAAAACACGAAAA
104845284 TTTTTAAAACACGAAAA
1 TTTTTAAAACACGAAAA
* *
104845301 TTTTTGAAACACGGAAAT
1 TTTTTAAAACAC-GAAAA
***
104845319 TTTTTAGAAA-ACGATTT
1 TTTTTA-AAACACGAAAA
* *
104845336 TTTTTAAAATCACCG-GAG
1 TTTTTAAAA-CA-CGAAAA
104845354 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
* *
104845372 TCTTTGAAACACCG-AAA
1 TTTTTAAAACA-CGAAAA
104845389 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
* ***
104845407 TTTTTGAAACACGGTCATTT
1 TTTTTAAAACAC-G--AAAA
104845427 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
* **
104845445 TTTTTGAAAGACATG-ATT
1 TTTTT-AAA-ACACGAAAA
*
104845463 TTTTTGAAAATA-G-AAA
1 TTTTT-AAAACACGAAAA
*
104845479 TTTATAAAACACGAAAA
1 TTTTTAAAACACGAAAA
*
104845496 TTTTTTCTGAAAACAAGAAAA
1 --TTTT-T-AAAACACGAAAA
* * *
104845517 TTTTTGAAACACTAGAA
1 TTTTTAAAACACGAAAA
*
104845534 TTTTGAAAACACGA
1 TTTTTAAAACACGA
104845548 TTTTTCTTTA
Statistics
Matches: 314, Mismatches: 69, Indels: 58
0.71 0.16 0.13
Matches are distributed among these distances:
12 2 0.01
13 4 0.01
15 10 0.03
16 30 0.10
17 148 0.47
18 75 0.24
19 20 0.06
20 8 0.03
21 17 0.05
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.33
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:104845198 original size:52 final size:50
Alignment explanation
Indices: 104845119--104845241 Score: 126
Period size: 52 Copynumber: 2.4 Consensus size: 50
104845109 TGAAAGTTTT
* *
104845119 TTTTTAAAACACGAGA-ATTTTTAAACACG-GAAATTTCAAAAACACGAAAA
1 TTTTTAAAACACGA-ATTTTTTTAAACACGAG-AATTTCAAAAACAAGAAAA
** * *
104845169 TTTTTAAAACACGACATTTTTTTGAAACACGAGAATTTTTAAAACAAGACAT
1 TTTTTAAAACACGA-ATTTTTTT-AAACACGAGAATTTCAAAAACAAGAAAA
*
104845221 TTTTTGAAACAC-AATTTTTTT
1 TTTTTAAAACACGAATTTTTTT
104845242 CTTAAAAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
50 23 0.37
51 6 0.10
52 32 0.52
53 1 0.02
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (50 bp):
TTTTTAAAACACGAATTTTTTTAAACACGAGAATTTCAAAAACAAGAAAA
Found at i:104845206 original size:35 final size:34
Alignment explanation
Indices: 104845117--104845537 Score: 192
Period size: 35 Copynumber: 12.1 Consensus size: 34
104845107 AATGAAAGTT
* *
104845117 TTTTTTTAAAACACGAGAATTTTT-AAACACGGAA
1 TTTTTTTGAAACACGAAAATTTTTAAAACAC-GAA
* ***
104845151 -ATTTCAAAAACACGAAAATTTTTAAAACACGACA
1 TTTTTTTGAAACACGAAAATTTTTAAAACACGA-A
* *
104845185 TTTTTTTGAAACACGAGAATTTTTAAAACAAGACA
1 TTTTTTTGAAACACGAAAATTTTTAAAACACGA-A
**
104845220 -TTTTTTGAAACAC-AATTTTTTTCTTAAAA-A--AA
1 TTTTTTTGAAACACGAA--AATTT-TTAAAACACGAA
* * *
104845252 ----TTTAAAATACGAGAATTTTTAAAACACGAA
1 TTTTTTTGAAACACGAAAATTTTTAAAACACGAA
** * *
104845282 AATTTTTAAAACACGAAAATTTTTGAAACACGGAAA
1 TTTTTTTGAAACACGAAAATTTTTAAAACAC-G-AA
* *** *
104845318 TTTTTTAGAAA-ACGATTTTTTTTAAAATCACCGGA
1 TTTTTTTGAAACACGAAAATTTTTAAAA-CA-CGAA
* * *
104845353 -GTTTTTGAAAACACGAAAATCTTTGAAACACCGAA
1 TTTTTTTG-AAACACGAAAATTTTTAAAACA-CGAA
* * *
104845388 -ATTTTTGAAAACACGAAAATTTTTGAAACACGGTCAT
1 TTTTTTTG-AAACACGAAAATTTTTAAAACAC-G--AA
*
104845425 TTTTTTTGAAAACACGAAAATTTTTGAAAGACATG-A
1 TTTTTTTG-AAACACGAAAATTTTT-AAA-ACACGAA
* *
104845461 TTTTTTTGAAA-A-TAGAAATTTATAAAACACGAAAA
1 TTTTTTTGAAACACGA-AAATTTTTAAAACACG--AA
* *
104845496 TTTTTTCTGAAAACAAGAAAATTTTTGAAACACTAGAA
1 TTTTTT-TG-AAACACGAAAATTTTTAAAACAC--GAA
104845534 TTTT
1 TTTT
104845538 GAAAACACGA
Statistics
Matches: 300, Mismatches: 51, Indels: 68
0.72 0.12 0.16
Matches are distributed among these distances:
27 6 0.02
28 4 0.01
29 8 0.03
30 3 0.01
32 5 0.02
33 27 0.09
34 58 0.19
35 94 0.31
36 39 0.13
37 5 0.02
38 43 0.14
39 4 0.01
40 4 0.01
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.34
Consensus pattern (34 bp):
TTTTTTTGAAACACGAAAATTTTTAAAACACGAA
Found at i:104845499 original size:72 final size:73
Alignment explanation
Indices: 104845255--104845547 Score: 225
Period size: 71 Copynumber: 4.1 Consensus size: 73
104845245 AAAAAAATTT
* * * *
104845255 AAAATACGAGAATTTTTAAAACACGAAAA---TTTTT-AAAACACGAAAATTTTTGAAACACGGA
1 AAAACACGAAAATTTATAAAACACGAAAATTTTTTTTGAAAACACGAAAATTTTTGAAACACCGA
*
104845316 AATTTTTT
66 AATTTTTG
*** * * * *
104845324 AGAAA-ACGATTTTTTTTAAAATCACCG--GA--GTTTTTGAAAACACGAAAATCTTTGAAACAC
1 A-AAACACGAAAATTTATAAAA-CA-CGAAAATTTTTTTTGAAAACACGAAAATTTTTGAAACAC
104845384 CGAAATTTTTG
63 CGAAATTTTTG
* * *** * *
104845395 AAAACACGAAAATTTTTGAAACACGGTCATTTTTTTTGAAAACACGAAAATTTTTGAAAGACATG
1 AAAACACGAAAATTTATAAAACACGAAAATTTTTTTTGAAAACACGAAAATTTTTGAAACAC-CG
**
104845460 ATTTTTTTG
65 AAATTTTTG
* * * *
104845469 AAAATA-G-AAATTTATAAAACACGAAAATTTTTTCTGAAAACAAGAAAATTTTTGAAACA-CTA
1 AAAACACGAAAATTTATAAAACACGAAAATTTTTTTTGAAAACACGAAAATTTTTGAAACACCGA
104845531 GAA-TTTTG
66 -AATTTTTG
104845539 AAAACACGA
1 AAAACACGA
104845548 TTTTTCTTTA
Statistics
Matches: 178, Mismatches: 32, Indels: 25
0.76 0.14 0.11
Matches are distributed among these distances:
69 17 0.10
70 26 0.15
71 49 0.28
72 44 0.25
73 29 0.16
74 13 0.07
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (73 bp):
AAAACACGAAAATTTATAAAACACGAAAATTTTTTTTGAAAACACGAAAATTTTTGAAACACCGA
AATTTTTG
Found at i:104846152 original size:10 final size:11
Alignment explanation
Indices: 104846127--104846153 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
104846117 TGTTTTTATT
104846127 TTTTTAATTAC
1 TTTTTAATTAC
104846138 TTTTTAATTAC
1 TTTTTAATTAC
104846149 TTTTT
1 TTTTT
104846154 TTCTTTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTTAATTAC
Found at i:104846164 original size:10 final size:10
Alignment explanation
Indices: 104846151--104846204 Score: 56
Period size: 10 Copynumber: 5.2 Consensus size: 10
104846141 TTAATTACTT
104846151 TTTTTCTTTC
1 TTTTTCTTTC
104846161 TTTTTCTTTC
1 TTTTTCTTTC
104846171 TCTTTT-TTTC
1 T-TTTTCTTTC
*
104846181 TTTCTTTTTTC
1 TTT-TTCTTTC
*
104846192 TTCTTCTCTTC
1 TTTTTCT-TTC
104846203 TT
1 TT
104846205 CTTGTCTCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
9 2 0.05
10 21 0.55
11 15 0.39
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:104846170 original size:14 final size:13
Alignment explanation
Indices: 104846149--104846201 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 13
104846139 TTTTAATTAC
104846149 TTTT-TTTCTTTCT
1 TTTTCTTTCTTT-T
104846162 TTTTCTTTCTCTTT
1 TTTTCTTTCT-TTT
104846176 TTTTCTTTCTTTT
1 TTTTCTTTCTTTT
104846189 TTCTTCTTCTCTT
1 TT-TTCTT-TCTT
104846202 CTTCTTGTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
13 9 0.25
14 21 0.58
15 6 0.17
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTCTTTCTTTT
Found at i:104846787 original size:29 final size:29
Alignment explanation
Indices: 104846754--104846869 Score: 83
Period size: 29 Copynumber: 3.9 Consensus size: 29
104846744 TGTAATTTTT
*
104846754 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * * *
104846783 TGAAAGTTAAGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTAGGGT-TAAAATGAAATTTAA
* * *
104846812 AGAAAGTTTAAGGGTCAAAATAAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
104846841 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAA-TTTA-GGGTTAAAATGAAATTT
104846870 TTATTTTTAA
Statistics
Matches: 68, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
29 35 0.51
30 33 0.49
ACGTcount: A:0.47, C:0.03, G:0.21, T:0.29
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:104846838 original size:30 final size:30
Alignment explanation
Indices: 104846769--104846869 Score: 116
Period size: 30 Copynumber: 3.4 Consensus size: 30
104846759 ATTTAGGATT
*
104846769 AAAATGAAATTTAATGAAAG-TTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAAGGGTC
* *
104846798 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAAGGGTC
* * *
104846828 AAAATAAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAAGGGTC
*
104846858 AAAATGCAATTT
1 AAAATGAAATTT
104846870 TTATTTTTAA
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
29 19 0.32
30 41 0.68
ACGTcount: A:0.47, C:0.04, G:0.21, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAAGGGTC
Found at i:104846884 original size:14 final size:15
Alignment explanation
Indices: 104846865--104846899 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
104846855 GTCAAAATGC
104846865 AATTTTTATTTTT-A
1 AATTTTTATTTTTGA
*
104846879 AATTTTTTTTTTTGA
1 AATTTTTATTTTTGA
104846894 AATTTT
1 AATTTT
104846900 GAAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
AATTTTTATTTTTGA
Found at i:104847663 original size:118 final size:118
Alignment explanation
Indices: 104847455--104847685 Score: 363
Period size: 118 Copynumber: 2.0 Consensus size: 118
104847445 TGTTTTCCAT
* *
104847455 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACCGAGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGAGGTAGGGTGCTTGGGTTGTCATT
*
104847520 TTACTTCGCGTCAAAAGATTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCGCGTCAAAAGATTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
** *
104847573 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGAGGTAGGGTGCTTGGGTTGTCATT
* ****
104847638 CTACTTCGCGTCAAAAGGTTGTGTGACGTGTTGGGTAAAACTCCGCTA
66 CTACTTCGCGTCAAAAGATTGTGTGACGTGACAAGTAAAACTCCGCTA
104847686 ACCGGAAATA
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
118 102 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGAGGTAGGGTGCTTGGGTTGTCATT
CTACTTCGCGTCAAAAGATTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
Found at i:104853264 original size:11 final size:11
Alignment explanation
Indices: 104853250--104853295 Score: 67
Period size: 11 Copynumber: 4.3 Consensus size: 11
104853240 TACCCATTCT
104853250 TTGCCCATACC
1 TTGCCCATACC
104853261 TTGCCCATACC
1 TTGCCCATACC
*
104853272 TTTCCCATACC
1 TTGCCCATACC
*
104853283 -TACCCATACC
1 TTGCCCATACC
104853293 TTG
1 TTG
104853296 GAAAGGTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
10 9 0.29
11 22 0.71
ACGTcount: A:0.20, C:0.43, G:0.07, T:0.30
Consensus pattern (11 bp):
TTGCCCATACC
Found at i:104853278 original size:22 final size:22
Alignment explanation
Indices: 104853240--104853294 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
104853230 TATTAGAATA
*
104853240 TACCCAT-TCTTTGCCCATACC
1 TACCCATACCTTTGCCCATACC
*
104853261 TTGCCCATACCTTT-CCCATACC
1 -TACCCATACCTTTGCCCATACC
104853283 TACCCATACCTT
1 TACCCATACCTT
104853295 GGAAAGGTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.38
22 14 0.48
23 4 0.14
ACGTcount: A:0.20, C:0.44, G:0.04, T:0.33
Consensus pattern (22 bp):
TACCCATACCTTTGCCCATACC
Found at i:104854056 original size:19 final size:18
Alignment explanation
Indices: 104854011--104854058 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
104854001 TATCTGCTTG
104854011 TTTAATTTTTATATATTT
1 TTTAATTTTTATATATTT
*
104854029 TTTGGATTTTTA-ATCATTT
1 TTT-AATTTTTATAT-ATTT
104854048 TTGTAATTTTT
1 TT-TAATTTTT
104854059 TTTAGAATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 5 0.20
19 19 0.76
20 1 0.04
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (18 bp):
TTTAATTTTTATATATTT
Found at i:104858844 original size:21 final size:22
Alignment explanation
Indices: 104858815--104858861 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
104858805 CAGAAGGAGT
*
104858815 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
104858837 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
104858858 GAGT
1 GAGT
104858862 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:104863506 original size:21 final size:23
Alignment explanation
Indices: 104863481--104863529 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 23
104863471 TTCAACTATT
104863481 TAATTAT-AATAAATT-AATTAA
1 TAATTATAAATAAATTAAATTAA
104863502 TAATT-TAAATAAATTAAATTAA
1 TAATTATAAATAAATTAAATTAA
*
104863524 TCATTA
1 TAATTA
104863530 AGTTATCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 1 0.04
21 13 0.54
22 10 0.42
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TAATTATAAATAAATTAAATTAA
Found at i:104866603 original size:41 final size:41
Alignment explanation
Indices: 104866558--104866638 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
104866548 TTTTGTATTC
104866558 CTATTTCAAGTTGGAATTGAATTATTTTATTTTCTCTTTTT
1 CTATTTCAAGTTGGAATTGAATTATTTTATTTTCTCTTTTT
* * *
104866599 CTATTTCAATTTGGAATTGAATTATTTTCTTTTGTCTTTT
1 CTATTTCAAGTTGGAATTGAATTATTTTATTTTCTCTTTT
104866639 AATTTGACGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.59
Consensus pattern (41 bp):
CTATTTCAAGTTGGAATTGAATTATTTTATTTTCTCTTTTT
Found at i:104870251 original size:13 final size:13
Alignment explanation
Indices: 104870235--104870261 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
104870225 ATGTAACACC
104870235 AAAAAATTTAACA
1 AAAAAATTTAACA
104870248 AAAAAATTTAACA
1 AAAAAATTTAACA
104870261 A
1 A
104870262 TGTTAACAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAAAATTTAACA
Found at i:104870751 original size:19 final size:20
Alignment explanation
Indices: 104870728--104870773 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
104870718 CTGTTTGTTT
* *
104870728 AATTTTT-ATATATTTTTTG
1 AATTTTTAATAAATTTTGTG
*
104870747 GATTTTTAATAAATTTTGTG
1 AATTTTTAATAAATTTTGTG
104870767 AATTTTT
1 AATTTTT
104870774 TTAGAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (20 bp):
AATTTTTAATAAATTTTGTG
Found at i:104874946 original size:21 final size:23
Alignment explanation
Indices: 104874921--104874969 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
104874911 TTCAATTATT
104874921 TAATTAT-AATAAACT-AATTAA
1 TAATTATAAATAAACTAAATTAA
*
104874942 TAATT-TAAATAAATTAAATTAA
1 TAATTATAAATAAACTAAATTAA
*
104874964 TCATTA
1 TAATTA
104874970 AGTTATCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 1 0.04
21 12 0.52
22 10 0.43
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (23 bp):
TAATTATAAATAAACTAAATTAA
Found at i:104881933 original size:54 final size:54
Alignment explanation
Indices: 104881847--104881955 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 54
104881837 AGATCCTGTC
* * *
104881847 AGTTGCCCCATCATCAGCAAGCAAGCAGTCAATTCTCGATACCTGGTTTATCAA
1 AGTTGCCCCATCACCAACAAGCAAGCAATCAATTCTCGATACCTGGTTTATCAA
* **
104881901 AGTTGCCCCATCACCAACAAGCAAGCAATCAATTCTCGATGCCTTTTTTATCAA
1 AGTTGCCCCATCACCAACAAGCAAGCAATCAATTCTCGATACCTGGTTTATCAA
104881955 A
1 A
104881956 TTCAAACCTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (54 bp):
AGTTGCCCCATCACCAACAAGCAAGCAATCAATTCTCGATACCTGGTTTATCAA
Found at i:104893523 original size:20 final size:20
Alignment explanation
Indices: 104893495--104893534 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
104893485 TCCGACTAGA
104893495 GGATGGGTTAAACTTAATAC
1 GGATGGGTTAAACTTAATAC
*
104893515 GGATTGGTTAAACTTAATAC
1 GGATGGGTTAAACTTAATAC
104893535 AAATGGAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
GGATGGGTTAAACTTAATAC
Found at i:104895999 original size:26 final size:26
Alignment explanation
Indices: 104895962--104896045 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
104895952 TGATACAAAT
* *
104895962 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
104895988 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
104896014 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
104896040 TGATAA
1 TGATAA
104896046 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:104898948 original size:6 final size:6
Alignment explanation
Indices: 104898937--104898964 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
104898927 CCTTCTTTCT
104898937 ATATAC ATATAC ATATAC ATATAC ATAT
1 ATATAC ATATAC ATATAC ATATAC ATAT
104898965 TATTAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (6 bp):
ATATAC
Found at i:104900332 original size:18 final size:19
Alignment explanation
Indices: 104900294--104900339 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
104900284 TTATAAATAG
*
104900294 TATTATTTTCATATATCCT
1 TATTATTTTCATATATACT
104900313 TA-TATTTATCAT-TATACT
1 TATTATTT-TCATATATACT
104900331 TATTATTTT
1 TATTATTTT
104900340 ATCCTAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (19 bp):
TATTATTTTCATATATACT
Found at i:104904585 original size:14 final size:13
Alignment explanation
Indices: 104904565--104904596 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
104904555 ATTAAAAGAG
104904565 AAAAAAACAAAAA
1 AAAAAAACAAAAA
104904578 ATAAAAAACAAAAA
1 A-AAAAAACAAAAA
104904592 AAAAA
1 AAAAA
104904597 CAAAAAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.91, C:0.06, G:0.00, T:0.03
Consensus pattern (13 bp):
AAAAAAACAAAAA
Found at i:104906902 original size:75 final size:75
Alignment explanation
Indices: 104906797--104908143 Score: 984
Period size: 75 Copynumber: 16.9 Consensus size: 75
104906787 TTTCTATTTC
* * ** * *
104906797 AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACATGCTGAAGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
104906862 TGTTTTTCAA
66 TGTTTTTCAA
* * *
104906872 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTTAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
*
104906936 TTCTGTTTTAATTTCTGTTTTTTA
63 TTCTG--TT--TTTC-------AA
* * * * *
104906960 AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
104907025 TGTGTTTTAATTTA
66 TGT-TTTTCA---A
* *
104907039 TGTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTATTTTC
1 ------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
104907104 AATCTCTGTTTTTCAA
60 AATTTCTGTTTTTCAA
* * * * **
104907120 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAA-TT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* **
104907183 T-ATCATC-A
66 TGTTTTTCAA
* * * * * *
104907191 AAAAATCAACTCATATTGTGAGAGGTGAGTTAAGCCTCAAGACCCGTTGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
***
104907256 TGCTCAATTTATGTTTTTC
66 TG-------T-T-TTTCAA
104907275 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
104907340 TTTTTTTC-A
66 TGTTTTTCAA
* * * *
104907349 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
104907414 TGTGTTTTAATTTA
66 TGT-TTTTCA---A
* * * * **
104907428 TGTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGGGCCTCAAGTCACATTGAGGTATTTT-
1 ------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
104907492 -A--TC-----ATCAA
60 AATTTCTGTTTTTCAA
* *
104907500 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
104907565 TGTTTTAATTTCCGTGTTTCAA
66 TG--------T---T-TTTCAA
* * * * * *
104907587 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACGATGAGGTATTTTTAATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
104907652 CTGTTTTCTTCAA
65 CTG-TTT-TTCAA
* *
104907665 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC-CTGTTGAGG
1 ------------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC-GCTGAGG
104907729 TATTTTCAATTTCTGTTTTAATTTCCGTGTTTCAA
53 TATTTTCAATTTCTG--------T---T-TTTCAA
* * * *
104907764 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGAGGTATTTTTAATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
104907829 CTGTTTTTC--
65 CTGTTTTTCAA
* * * *
104907838 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGTTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
104907903 TGTTTTTTTCAATTTA
66 TG--TTTTTC-A---A
* * *
104907919 TGTTTTTCAAAAATCAGCTCATATTGCGAGAGTTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
1 --------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
*
104907984 TCAATTTCTGCTTTTCAA
58 TCAATTTCTGTTTTTCAA
* * *
104908002 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* *
104908067 TATTTGTCAA
66 TGTTTTTCAA
*
104908077 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
104908142 TG
66 TG
104908144 CTTTCCAATT
Statistics
Matches: 1027, Mismatches: 133, Indels: 224
0.74 0.10 0.16
Matches are distributed among these distances:
66 52 0.05
68 1 0.00
70 1 0.00
71 56 0.05
72 6 0.01
73 62 0.06
74 66 0.06
75 228 0.22
76 5 0.00
77 26 0.03
78 6 0.01
79 4 0.00
80 1 0.00
81 8 0.01
82 1 0.00
83 6 0.01
84 66 0.06
85 111 0.11
86 23 0.02
87 9 0.01
88 157 0.15
89 123 0.12
96 2 0.00
99 6 0.01
100 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAA
Found at i:104906946 original size:12 final size:12
Alignment explanation
Indices: 104906929--104906956 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
104906919 GCTGAGGTAT
104906929 TTTTAATTTCTG
1 TTTTAATTTCTG
104906941 TTTTAATTTCTG
1 TTTTAATTTCTG
104906953 TTTT
1 TTTT
104906957 TTAAAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (12 bp):
TTTTAATTTCTG
Found at i:104907031 original size:88 final size:87
Alignment explanation
Indices: 104906851--104907115 Score: 324
Period size: 85 Copynumber: 3.0 Consensus size: 87
104906841 TGCTGAAGTA
* * *
104906851 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTT-AATTTCTGTTTTT-TAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG--GA
*
104906916 CACGCTGAGGTATTTTTAA-TTTCTG
62 CACGCTGAGGTATTTTCAATTTTCTG
* * *
104906941 TTTTAATTTCTGTTTTTTAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
1 TTTTAATTTCTGTTTTTTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACG
* *
104907006 CTGAGGTATTGTCAATTTTTGTG
66 CTGAGGTATTTTCAA-TTTTCTG
* * *
104907029 TTTTAATTTATG---TTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTAATTTCTGTTTTTTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACG
* *
104907091 CTAAGGTATTTTCAA-TCTCTG
66 CTGAGGTATTTTCAATTTTCTG
104907112 TTTT
1 TTTT
104907116 TCAAAAAAAT
Statistics
Matches: 154, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
83 8 0.05
85 58 0.38
86 17 0.11
88 54 0.35
89 13 0.08
90 4 0.03
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (87 bp):
TTTTAATTTCTGTTTTTTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACG
CTGAGGTATTTTCAATTTTCTG
Found at i:104907197 original size:71 final size:73
Alignment explanation
Indices: 104907045--104907563 Score: 313
Period size: 74 Copynumber: 6.9 Consensus size: 73
104907035 TTTATGTTTC
** * * * *
104907045 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTATTTTCAATCTC
1 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAAT-T-
* **
104907110 TGTTTTTCAA
64 TGATCATCAA
* *
104907120 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAATTT-
1 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTG
104907184 ATCATC-A
66 ATCATCAA
* *
104907191 AAAAATCAACTCATATTGTGAGAGGTGAGTT-AAGCCTCAAGACCCGTTGAGGTATTTTTAATTT
1 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAA-CCTCAAGACACGTTGAGGTATTTTCAA-TT
* * *
104907255 CTGCTCAATTTATGTTTTTC
64 -TGATC-A-TCA-------A
* * * *
104907275 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAA-TT-
** **
104907340 TTTTTTTC-A
64 TGATCATCAA
* * ** * * *
104907349 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAA---T
* ***
104907414 TGTGTTTTAATTTATGTTTC
63 T-TG-----A-TCA--TCAA
** * *
104907434 AAAAATCAACTCATATTGTGAGAGGTGAGTTGGGCCTCAAGTCACATTGAGGTA---T---TTT-
1 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTG
104907492 ATCATCAA
66 ATCATCAA
* * * * *
104907500 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTT
104907564 TTGTTTTAAT
Statistics
Matches: 356, Mismatches: 56, Indels: 67
0.74 0.12 0.14
Matches are distributed among these distances:
66 49 0.14
68 2 0.01
69 2 0.01
70 2 0.01
71 55 0.15
72 8 0.02
73 2 0.01
74 61 0.17
75 56 0.16
76 7 0.02
82 4 0.01
84 60 0.17
85 48 0.13
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTG
ATCATCAA
Found at i:104907529 original size:66 final size:66
Alignment explanation
Indices: 104907434--104907557 Score: 194
Period size: 66 Copynumber: 1.9 Consensus size: 66
104907424 TTTATGTTTC
* * * *
104907434 AAAAATCAACTCATATTGTGAGAGGTGAGTTGGGCCTCAAGTCACATTGAGGTATTTTATCATCA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTTATCATCA
104907499 A
66 A
* *
104907500 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTT
104907558 CAATTTTTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 52 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (66 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTTATCATCA
A
Found at i:104907553 original size:151 final size:151
Alignment explanation
Indices: 104907120--104907650 Score: 613
Period size: 151 Copynumber: 3.4 Consensus size: 151
104907110 TGTTTTTCAA
* *
104907120 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTT-AATTCA
* * * * * * *
104907185 TCATCAAAAAATCAACTCATATTGTGAGAGGTGAGTTAAGCCTCAAGACCCGTTGAGGTATTTTT
65 TCA--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
* * *
104907250 AATTTCTG-CTCAATTTATGTTTTTC
128 AATTTTTGTTTTAATTTATG--TTTC
* * * **
104907275 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTT-AA-TTC
* *
104907340 TTTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTAT
64 -----ATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAT
*
104907404 TGTCAATTTTTGTGTTTTAATTTATGTTTC
124 TTTCAA-TTTT-TGTTTTAATTTATGTTTC
* **
104907434 AAAAATCAACTCATATTGTGAGAGGTGAGTTGGGCCTCAAGTCACATTGAGGTATTTT-A-TCAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTAATTCAT
104907497 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAT
66 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAT
*
104907562 TTTTGTTTTAATTTCCGTGTTTC
131 TTTTGTTTTAATTT--ATGTTTC
*
104907585 AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACGA-TGAGGTATTTTTAA
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCAC-ATTGAGGTA-TTTTAA
104907649 TT
61 TT
104907651 TCTGTTTTCT
Statistics
Matches: 323, Mismatches: 34, Indels: 36
0.82 0.09 0.09
Matches are distributed among these distances:
149 11 0.03
150 6 0.02
151 66 0.20
154 48 0.15
155 62 0.19
156 3 0.01
157 2 0.01
158 53 0.16
159 59 0.18
160 2 0.01
161 11 0.03
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (151 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTAATTCAT
CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAT
TTTTGTTTTAATTTATGTTTC
Found at i:104907651 original size:88 final size:88
Alignment explanation
Indices: 104907498--104907835 Score: 477
Period size: 88 Copynumber: 3.8 Consensus size: 88
104907488 TTTTATCATC
* * * *
104907498 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACGATGAGGTATTTTCAATT
*
104907563 TTTGTTTTAATTTCCGTGTTTCA
66 TCTGTTTTAATTTCCGTGTTTCA
* *
104907586 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACGATGAGGTATTTTTAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACGATGAGGTATTTTCAATT
* *
104907651 TCTGTTTTCTTCAATTTCTGTTTTTC-
66 TCTG--TT-TT-AATTTCCGTGTTTCA
* * *
104907677 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC-CTGTTGAGGTATTTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCAC-GATGAGGTATTTTCAAT
104907739 TTCTGTTTTAATTTCCGTGTTTCA
65 TTCTGTTTTAATTTCCGTGTTTCA
* *
104907763 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGAGGTATTTTTAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACGATGAGGTATTTTCAATT
104907828 TCTGTTTT
66 TCTGTTTT
104907836 TCAAAAATCA
Statistics
Matches: 220, Mismatches: 21, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
85 12 0.05
86 2 0.01
87 2 0.01
88 127 0.58
89 61 0.28
90 2 0.01
91 2 0.01
92 12 0.05
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (88 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACGATGAGGTATTTTCAATT
TCTGTTTTAATTTCCGTGTTTCA
Found at i:104907905 original size:250 final size:238
Alignment explanation
Indices: 104907191--104908478 Score: 1247
Period size: 250 Copynumber: 5.3 Consensus size: 238
104907181 TTTATCATCA
* * * * * *
104907191 AAAAATCAACTCATATTGTGAGAGGTGAGTTAAGCCTCAAGACCCGTTGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*** *
104907256 TGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
66 TG-TC------T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACG
* *
104907321 CTGAGGTATTTTCAATTTCTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
123 ATGAGGTATTTTCAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
** * * * * *
104907386 CGGGGCACGCTGAGGTATTGTCAATTTTTGTGTT-TT-AATTTATG--TTTC
187 CAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCTTCAATTTCTGCTTTTC
* * * * **
104907434 AAAAATCAACTCATATTGTGAGAGGTGAGTTGGGCCTCAAGTCACATTGAGGTATTTT--A----
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* * *
104907493 --TC--ATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTA
66 TGTCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGATGAGGTA
* *
104907554 TTTTCAATTTTTGTTTTAATTTCCGTGTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTT
131 TTTTCAATTTCTG--------T---T-TTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * * *
104907619 GAACCTCAAGTCACGATGAGGTATTTTTAATTTCTGTTTTCTTCAATTTCTGTTTTTC
181 GAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCTTCAATTTCTGCTTTTC
* *
104907677 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC-CTGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC-GCTGAGGTATTTTCAATTT
*
104907741 CTGTTTTAATTTCCGTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGG
65 CTG--------T-C-T-TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
104907806 TCACGATGAGGTATTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
118 TCACGATGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * * * *
104907871 GCCTCAAGACATGTTGAGGTAATTTCAATTTCTGTTTTTTTCAATTTATGTTTTTC
183 GCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCTTCAATTTCTGCTTTTC
* * *
104907927 AAAAATCAGCTCATATTGCGAGAGTTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* * *
104907992 TG-CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTA
66 TGTCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGATGAGGTA
* * * * * *
104908056 ATTTCAATTTATATTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
131 TTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* *
104908121 CGCTGAGGTATTTTCAATTTCTGCTTTC--CAATTTCTGCTCTTC
194 CGCTGAGGTATTTTCAATTTCTGTTTTCTTCAATTTCTGCTTTTC
* * *
104908164 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTCAGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
* *
104908229 TCTGT-TTTTC--AAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGTTG
64 TCTGTCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GATG
*
104908290 AGGTCTTTTCAATTTCTGTCTTTCAATTTCTGTGCATCAAAATCAACTCATATTGCGAGAGGTGA
126 AGGTATTTTCAATTTCTG--------TTT-T-T-CA--AAAATCAACTCATATTGCGAGAGGTGA
** *
104908355 GTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTGATGTTTTTTTCAATTTAC-GCTTTTC
178 GTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCTTCAATTT-CTGCTTTTC
* *
104908416 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGA-ACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTATTTTCAATT
104908479 AATGTTTTTT
Statistics
Matches: 885, Mismatches: 93, Indels: 127
0.80 0.08 0.11
Matches are distributed among these distances:
225 65 0.07
233 1 0.00
234 2 0.00
236 3 0.00
237 121 0.14
238 4 0.00
239 211 0.24
240 3 0.00
241 8 0.01
242 1 0.00
243 109 0.12
245 1 0.00
247 3 0.00
248 1 0.00
249 1 0.00
250 260 0.29
251 4 0.00
252 12 0.01
253 5 0.01
254 1 0.00
257 1 0.00
259 1 0.00
260 1 0.00
264 2 0.00
265 64 0.07
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (238 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGATGAGGTA
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
CTGAGGTATTTTCAATTTCTGTTTTCTTCAATTTCTGCTTTTC
Found at i:104907914 original size:16 final size:16
Alignment explanation
Indices: 104907893--104907925 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
104907883 GTTGAGGTAA
*
104907893 TTTCAATTTCTGTTTT
1 TTTCAATTTATGTTTT
104907909 TTTCAATTTATGTTTT
1 TTTCAATTTATGTTTT
104907925 T
1 T
104907926 CAAAAATCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.09, G:0.06, T:0.70
Consensus pattern (16 bp):
TTTCAATTTATGTTTT
Found at i:104907978 original size:89 final size:88
Alignment explanation
Indices: 104907819--104907998 Score: 270
Period size: 89 Copynumber: 2.0 Consensus size: 88
104907809 CGATGAGGTA
* *
104907819 TTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATG
1 TTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
* *
104907884 TTGAGGTAATTTCAATTTCTGTT
66 CTGAGGTAATTTCAATTTCTGCT
* * * *
104907907 TTTTTCAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGTTGAGTTGAGCCTCAGGGCAC
1 TTTTT-AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
104907972 GCTGAGGTATTTTCAATTTCTGCT
65 GCTGAGGTAATTTCAATTTCTGCT
104907996 TTT
1 TTT
104907999 CAAAAAAATC
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
88 5 0.06
89 77 0.94
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (88 bp):
TTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
CTGAGGTAATTTCAATTTCTGCT
Found at i:104908106 original size:150 final size:149
Alignment explanation
Indices: 104907909--104908398 Score: 563
Period size: 164 Copynumber: 3.1 Consensus size: 149
104907899 TTTCTGTTTT
* *
104907909 TTTCAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGTTGAGTTGAGCCTCAGGGCACGC
1 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
104907974 TGAGGTATTTTCAATTTCTGCT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 TGAGGTATTTTCAATTTCTGCTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
104908038 TCAGGACATGCTGAGGTAA
131 TCAGGACACGCTGAGGTAA
* *
104908057 TTTCAATTTATATTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
1 TTTCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
104908122 GCTGAGGTATTTTCAATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGA
64 GCTGAGGTATTTTCAATTTCTG-----------CT-CT-TTCAAAAAAATCAACTCATATTGCGA
* *
104908187 GAGGTGAGTTAAACCTCAGGACACGCTGAGGTAA
116 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
* * *
104908221 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTC-GGCTCACA
1 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCAC-
* *
104908285 TGTTGAGGTCTTTTCAATTTCTG-TCTTTCAATTTCTGTGCATCAAAATCAACTCATATTGCGAG
64 -GCTGAGGTATTTTCAATTTCTGCTCTTTCAA---------A--AAAATCAACTCATATTGCGAG
* *
104908349 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTAT
117 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
*
104908382 TTTCAATTGATGTTTTT
1 TTTCAATTTATGTTTTT
104908399 TTCAATTTAC
Statistics
Matches: 292, Mismatches: 20, Indels: 47
0.81 0.06 0.13
Matches are distributed among these distances:
148 16 0.05
150 70 0.24
151 2 0.01
152 1 0.00
159 1 0.00
161 69 0.24
162 40 0.14
163 1 0.00
164 92 0.32
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (149 bp):
TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
TGAGGTATTTTCAATTTCTGCTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
TCAGGACACGCTGAGGTAA
Found at i:104908106 original size:489 final size:479
Alignment explanation
Indices: 104907188--104908478 Score: 1503
Period size: 489 Copynumber: 2.6 Consensus size: 479
104907178 CAATTTATCA
* *
104907188 TCAAAAAATCAACTCATATTGTGAGAGGTGAGTTAAGCCTCAAGACCCGTTGAGGTATTTTTAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGA-CCGTTGAGGTATTTTCAAT
*
104907253 TTCTGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
65 TTCTG-T-AA-TT-TG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
* *
104907318 ACGCTGAGGTATTTTCAATTTCTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
125 ACGATGAGGTATTTTCAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
** * * *
104907383 CCTCGGGGCACGCTGAGGT-ATTGTCAATTTTTG-TGTTTT-AATTTATG-TTTCAAAAATCAAC
189 CCTCAAGACACGCTGAGGTAATT-TCAATTTATGTTTTTTTCAATTTATGTTTTCAAAAATCAAC
* * * * **
104907444 TCATATTGTGAGAGGTGAGTTGGGCCTCAAGTCACATTGAGGTATTTT--A--TCATCAAAAAAA
253 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCATCAAAAAAA
* * *
104907505 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTTT
318 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA---TTGTTA
* *
104907570 TAATTTCCGTGTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACGA
380 TAATTT-C-TG-TTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGGCACGA
* * * *
104907635 TGAGGTATTTTTAATTTCTGTTTTCTTCAATTTCTGTTTT
442 TGAGGTATTTTCAATTTCTGCTTTC--CAATTTCTGCTCT
*
104907675 TC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCTGTTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACC-GTTGAGGTATTTTCAAT
*
104907739 TTCTGTTTTAATTTCCGTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA
65 TTCTG---TAATTT--GT-TTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
104907804 GGTCACGATGAGGTATTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
121 GGTCACGATGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * *
104907869 GAGCCTCAAGACATGTTGAGGTAATTTCAATTTCTGTTTTTTTCAATTTATGTTTTTCAAAAATC
186 GAGCCTCAAGACACGCTGAGGTAATTTCAATTTATGTTTTTTTCAATTTATG-TTTTCAAAAATC
* * *
104907934 AGCTCATATTGCGAGAGTTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGCTTTT
250 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA-TT-T-C--AT
*
104907999 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAA-
310 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
* *
104908063 T-TTAT-A-TT-TG-TC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
375 TGTTATAATTTCTGTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGGCAC
*
104908122 GCTGAGGTATTTTCAATTTCTGCTTTCCAATTTCTGCTCT
440 GATGAGGTATTTTCAATTTCTGCTTTCCAATTTCTGCTCT
* * * *
104908162 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTCAGGACACGCTGAGGTAATTTCAA
1 TC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGAC-CGTTGAGGTATTTTCAA
*
104908227 TTTCTG-----T-TTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTC-GGCTCACA
64 TTTCTGTAATTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC-
* *
104908285 TGTTGAGGTCTTTTCAATTTCTGTCTTTCAATTTCTGTGCATCAAAATCAACTCATATTGCGAGA
127 -GATGAGGTATTTTCAATTTCTG--------TTT-T-T-CA--AAAATCAACTCATATTGCGAGA
* * *
104908350 GGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTGATGTTTTTTTCAATTTACGCTTTT
178 GGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTATGTTTTTTTCAATTTATG-TTTT
* * *
104908415 CAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGAACGCTGAGGTATTTTCAATT
242 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
104908479 AATGTTTTTT
Statistics
Matches: 702, Mismatches: 60, Indels: 83
0.83 0.07 0.10
Matches are distributed among these distances:
473 2 0.00
474 40 0.06
476 19 0.03
477 4 0.01
478 1 0.00
481 1 0.00
484 3 0.00
485 4 0.01
486 65 0.09
487 24 0.03
488 3 0.00
489 321 0.46
490 79 0.11
491 8 0.01
492 2 0.00
493 54 0.08
495 3 0.00
496 1 0.00
497 3 0.00
498 1 0.00
499 1 0.00
500 1 0.00
502 62 0.09
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (479 bp):
TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACCGTTGAGGTATTTTCAATT
TCTGTAATTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGATG
AGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
ACACGCTGAGGTAATTTCAATTTATGTTTTTTTCAATTTATGTTTTCAAAAATCAACTCATATTG
CGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCATCAAAAAAATCAACTCA
TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTGTTATAATTTCTGTT
CAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGGCACGATGAGGTATTTTCAA
TTTCTGCTTTCCAATTTCTGCTCT
Found at i:104908300 original size:75 final size:73
Alignment explanation
Indices: 104908149--104908315 Score: 194
Period size: 75 Copynumber: 2.2 Consensus size: 73
104908139 TTCTGCTTTC
*
104908149 CAATTTCTG-CTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTCAGGACACGC
1 CAATTTCTGTCT-TTC--AAAAATCAACTCATATCGCGAGAGGTGAGTTAAACCTCAGGACACGC
104908213 TGAGGTAATTT
63 TGAGGTAATTT
* * * * *
104908224 CAATTTCTGTTTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGT
1 CAATTTCTGTCTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTAAACCTCAGG---ACACGC
**
104908288 TGAGGTCTTTT
63 TGAGGTAATTT
104908299 CAATTTCTGTCTTTCAA
1 CAATTTCTGTCTTTCAA
104908316 TTTCTGTGCA
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
72 2 0.03
73 35 0.44
75 41 0.52
76 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (73 bp):
CAATTTCTGTCTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTAAACCTCAGGACACGCTGA
GGTAATTT
Found at i:104908315 original size:14 final size:14
Alignment explanation
Indices: 104908296--104908322 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
104908286 GTTGAGGTCT
104908296 TTTCAATTTCTGTC
1 TTTCAATTTCTGTC
104908310 TTTCAATTTCTGT
1 TTTCAATTTCTGT
104908323 GCATCAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.19, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTGTC
Found at i:104908402 original size:88 final size:87
Alignment explanation
Indices: 104908221--104908625 Score: 394
Period size: 88 Copynumber: 4.6 Consensus size: 87
104908211 GCTGAGGTAA
* ** *
104908221 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG---ACAC
* * * * *
104908286 GTTGAGGTCTTTTCAATT-TCTGTC
63 GCTGAGGTATTTTCAATTATGTTTT
** * *
104908310 TTTCAATTTCTG-TGCATC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGCT-TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-GGACACG
104908373 CTGAGGTATTTTCAATTGATGTTTT
64 CTGAGGTATTTTCAATT-ATGTTTT
104908398 TTTCAATTTAC-GCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGA-AC
1 TTTCAATTT-CTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC--GGACAC
104908461 GCTGAGGTATTTTCAATTAATG-TTT
63 GCTGAGGTATTTTCAATT-ATGTTTT
* * * *
104908486 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTACGAGCGTTGAGTTGAGCCTCGGGTCACAT
1 TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-GG--ACAC
* * * *
104908551 GCCGAGGTATTTTCAA-AATCTGTT
63 GCTGAGGTATTTTCAATTATGTTTT
*** * * *
104908575 TGGAAAATTCTG-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAG
104908626 TCTTTGCTCA
Statistics
Matches: 270, Mismatches: 33, Indels: 27
0.82 0.10 0.08
Matches are distributed among these distances:
86 19 0.07
87 3 0.01
88 144 0.53
89 86 0.32
90 18 0.07
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (87 bp):
TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGACACGCT
GAGGTATTTTCAATTATGTTTT
Found at i:104910526 original size:17 final size:19
Alignment explanation
Indices: 104910497--104910542 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
104910487 ACAATAATAT
104910497 AAAATA-ATGATATGTACAA
1 AAAATATAT-ATATGTACAA
*
104910516 AAAATATATATATGTACAT
1 AAAATATATATATGTACAA
104910535 AAAATATA
1 AAAATATA
104910543 CACTAATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 23 0.92
20 2 0.08
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (19 bp):
AAAATATATATATGTACAA
Found at i:104910776 original size:17 final size:18
Alignment explanation
Indices: 104910731--104910776 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
104910721 GCATTAAAAA
104910731 ATATATACATA-ATATAT
1 ATATATACATATATATAT
*
104910748 ATAAATACATATA-ATAT
1 ATATATACATATATATAT
104910765 ATATATACATAT
1 ATATATACATAT
104910777 TAGAAATGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 25 0.96
18 1 0.04
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATATACATATATATAT
Found at i:104911188 original size:24 final size:22
Alignment explanation
Indices: 104911161--104911204 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
104911151 GGTCACCGGC
104911161 CGAAAGAAAGAAAGAAAAAAGATT
1 CGAAAG-AAG-AAGAAAAAAGATT
*
104911185 CGAAAGAAGAGGAAAAAAGA
1 CGAAAGAAGAAGAAAAAAGA
104911205 AAAAAATGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 3 0.16
24 6 0.32
ACGTcount: A:0.66, C:0.05, G:0.25, T:0.05
Consensus pattern (22 bp):
CGAAAGAAGAAGAAAAAAGATT
Found at i:104911480 original size:18 final size:17
Alignment explanation
Indices: 104911454--104911516 Score: 58
Period size: 18 Copynumber: 3.7 Consensus size: 17
104911444 CTAGGGTTTT
*
104911454 TTAGTTTTTTTTTTTGGG
1 TTAGGTTTTTTTTTT-GG
**
104911472 TTAGGTTTTTGTTTTTTC
1 TTAGGTTTTT-TTTTTGG
*
104911490 TT--CTTTTTTTTTTGG
1 TTAGGTTTTTTTTTTGG
104911505 TTAGGTTTTTTT
1 TTAGGTTTTTTT
104911517 GGGGGGGGCT
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
15 7 0.20
16 5 0.14
17 7 0.20
18 11 0.31
19 5 0.14
ACGTcount: A:0.05, C:0.03, G:0.17, T:0.75
Consensus pattern (17 bp):
TTAGGTTTTTTTTTTGG
Found at i:104912531 original size:146 final size:147
Alignment explanation
Indices: 104912284--104913359 Score: 1124
Period size: 146 Copynumber: 7.3 Consensus size: 147
104912274 GTGATCTGAA
104912284 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAATACCTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAA-ACAGAAATTGAAAATACCTC
*
104912349 AGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAAT
61 AGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAAT
*
104912413 TGAAAATACCTCAACGTGTCTTGAG
123 TGAAAATACCTCAGCGTGTCTTGAG
** * *
104912438 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGT
* *
104912502 GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACA-AAATTGAAAAT
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAA-ACAGAAATTGAAAAT
* *
104912566 ACCTCAGCATGTCTTAAG
130 ACCTCAGCGTGTCTTGAG
** * * *
104912584 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGACAACAGAAATTCAAATTACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAAAACAGAAATTGAAAATACCTCAG
104912649 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAA
63 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAA
*
104912714 ATACCTCAACGTGTCTTGAG
128 ATACCTCAGCGTGTCTTGAG
* ** * * *
104912734 TCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAAATACCTCAACGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGT
* ** * * *
104912798 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTA
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATA
*
104912861 CCTCAGCGTGTC-CGAG
131 CCTCAGCGTGTCTTGAG
*
104912877 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACCTCAGC
* * ** * * *
104912942 ATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTACAACAGAAATTGAAA
64 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTGAAAACAGAAATTGAAA
* *
104913007 TTACCTCAGCGTGTCCTGAG
128 ATACCTCAGCGTGTCTTGAG
* *
104913027 GCTCCACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAGTTGAAAAACGGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTT------------TTG-AAAACAGAAATT
* * * * *
104913092 GAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCTCTCGTAATACAAGTTGATTTTTTTGA
50 GAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGA
* *
104913157 CAACAGAAATTGAAATTACCTCAGCGTGTCTTGAG
113 AAACAGAAATTGAAAATACCTCAGCGTGTCTTGAG
* *
104913192 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT--------TAA--G--AATACCTCAGCGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGT
* *** * *
104913245 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---ACAT-ACAA-A-AAATTGATAATA
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATA
**
104913304 CCTCAGCGTGTCCCGAG
131 CCTCAGCGTGTCTTGAG
* * *
104913321 GCTCAACTCACCTCTCACAATATGAATTGA-ATTTTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
104913360 TAAAACATCA
Statistics
Matches: 809, Mismatches: 78, Indels: 92
0.83 0.08 0.09
Matches are distributed among these distances:
128 4 0.00
129 53 0.07
130 1 0.00
131 4 0.00
132 1 0.00
135 31 0.04
137 13 0.02
139 1 0.00
141 2 0.00
143 29 0.04
144 34 0.04
145 10 0.01
146 225 0.28
147 3 0.00
148 22 0.03
149 45 0.06
150 166 0.21
152 5 0.01
154 28 0.03
162 4 0.00
164 26 0.03
165 74 0.09
166 28 0.03
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (147 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATA
CCTCAGCGTGTCTTGAG
Found at i:104912852 original size:368 final size:370
Alignment explanation
Indices: 104912279--104913226 Score: 1359
Period size: 368 Copynumber: 2.5 Consensus size: 370
104912269 AGTGTGTGAT
*
104912279 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAAT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAGACAGAAATTGAAAAT
* * *
104912344 ACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAG
63 ACCTCA-CACGTGAACCGAGGCTCAACTCACCTCTCACAATATAAGTTGA-TATTTTGAAAACAG
104912409 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
126 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
104912474 AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
191 AAAACAGAAATTGAAATTACCTCAGCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
104912539 ATTTTTTTGAAAGAC-AAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCA
255 ATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCA
104912603 ATATGAGTTGATTTTTTTTTGACAACAGAAATTCAAATTACCTCAGCGTGTC
320 ATATGAGTTGATTTTTTTTT-ACAACAGAAATTCAAATTACCTCAGCGTGTC
*
104912655 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACC
* * * ** *
104912719 TCA-ACGTG-TCTTGAGTCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAAT
66 TCACACGTGAAC-CGAGGCTCAACTCACCTCTCACAATATAAGTTGATATTTTGAAAACAGAAAT
104912781 TGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA
130 TGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA
104912846 CAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
195 CAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
104912911 TTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATG
260 TTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATG
*
104912976 AGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTC
325 AGTTGATTTTTTTTTACAACAGAAATTCAAATTACCTCAGCGTGTC
* *
104913022 CTGAGGCTCCACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAGTTGAAAAACGG
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-----G-A-AA---G----ACAG
** * * * ** * *
104913087 AAATTGAAAATACCTC-GGCGTGTGACCTAAGGCTCAACTCGCCTCTCGTAATACAAGTTGATTT
52 AAATTGAAAATACCTCACACGTG-AACC-GAGGCTCAACTCACCTCTCACAATATAAGTTGA-TA
* * * **
104913151 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
114 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
104913216 AGTTGATTTTT
179 AGTTGAATTTT
104913227 TTAAGAATAC
Statistics
Matches: 514, Mismatches: 35, Indels: 36
0.88 0.06 0.06
Matches are distributed among these distances:
367 119 0.23
368 175 0.34
369 1 0.00
370 32 0.06
372 22 0.04
373 12 0.02
374 2 0.00
376 33 0.06
382 23 0.04
384 25 0.05
386 70 0.14
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (370 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACC
TCACACGTGAACCGAGGCTCAACTCACCTCTCACAATATAAGTTGATATTTTGAAAACAGAAATT
GAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAC
AGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATGA
GTTGATTTTTTTTTACAACAGAAATTCAAATTACCTCAGCGTGTC
Done.