Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 327 of 343
Found at i:105134326 original size:17 final size:19
Alignment explanation
Indices: 105134284--105134327 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
105134274 ACGAAATTTT
*
105134284 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
105134303 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
105134321 AA-TATTA
1 AATTATTA
105134328 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:105136793 original size:21 final size:21
Alignment explanation
Indices: 105136751--105136793 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
105136741 ATTCCCCACA
* *
105136751 GGAAGTGTAGGGATGGACGGG
1 GGAAGTGCAGGGATAGACGGG
* *
105136772 GGAAGTGCAGGGTTAGATGGG
1 GGAAGTGCAGGGATAGACGGG
105136793 G
1 G
105136794 TCATCATGCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.05, G:0.56, T:0.16
Consensus pattern (21 bp):
GGAAGTGCAGGGATAGACGGG
Found at i:105137838 original size:16 final size:17
Alignment explanation
Indices: 105137806--105137838 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
105137796 CATCAAGAAG
105137806 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
105137824 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
105137839 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:105142786 original size:10 final size:10
Alignment explanation
Indices: 105142766--105142816 Score: 54
Period size: 10 Copynumber: 5.1 Consensus size: 10
105142756 AATTAAATTC
105142766 TAAAGATAAA
1 TAAAGATAAA
105142776 TACAA-ATAAA
1 TA-AAGATAAA
105142786 TAAAGAT-AA
1 TAAAGATAAA
105142795 TAAAAGATAAA
1 T-AAAGATAAA
105142806 TGAAA-ATAAA
1 T-AAAGATAAA
105142816 T
1 T
105142817 CCTAAAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
9 5 0.14
10 23 0.64
11 8 0.22
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
TAAAGATAAA
Found at i:105142791 original size:20 final size:21
Alignment explanation
Indices: 105142766--105142816 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
105142756 AATTAAATTC
*
105142766 TAAAGATAAATACAA-ATAAA
1 TAAAGATAAATAAAAGATAAA
105142786 TAAAGAT-AATAAAAGATAAA
1 TAAAGATAAATAAAAGATAAA
105142806 TGAAA-ATAAAT
1 T-AAAGATAAAT
105142817 CCTAAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 6 0.22
20 15 0.56
21 6 0.22
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.22
Consensus pattern (21 bp):
TAAAGATAAATAAAAGATAAA
Found at i:105144733 original size:7 final size:7
Alignment explanation
Indices: 105144710--105144824 Score: 91
Period size: 7 Copynumber: 16.6 Consensus size: 7
105144700 TATCAATATC
105144710 TAAA-AA
1 TAAATAA
105144716 TAAAGTAA
1 TAAA-TAA
105144724 TAAATAA
1 TAAATAA
105144731 T-AA-AA
1 TAAATAA
105144736 TAAAATAA
1 T-AAATAA
*
105144744 TAAATAC
1 TAAATAA
105144751 T-AATAA
1 TAAATAA
*
105144757 -AATAAAA
1 TAA-ATAA
105144764 TAAAATAA
1 T-AAATAA
*
105144772 TAAATAC
1 TAAATAA
105144779 T-AATAA
1 TAAATAA
*
105144785 -AATAAAA
1 TAA-ATAA
105144792 TAAAATAA
1 T-AAATAA
105144800 TAAATAA
1 TAAATAA
105144807 TAAATAA
1 TAAATAA
105144814 TAAATAA
1 TAAATAA
105144821 TAAA
1 TAAA
105144825 AATTAAGAAA
Statistics
Matches: 88, Mismatches: 8, Indels: 25
0.73 0.07 0.21
Matches are distributed among these distances:
5 3 0.03
6 16 0.18
7 48 0.55
8 17 0.19
9 4 0.05
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.25
Consensus pattern (7 bp):
TAAATAA
Found at i:105144739 original size:5 final size:5
Alignment explanation
Indices: 105144729--105144799 Score: 70
Period size: 5 Copynumber: 13.0 Consensus size: 5
105144719 AGTAATAAAT
* *
105144729 AATAA AATAA AATAATA AATACT AATAA AATAA AATAA AATAATA AATACT
1 AATAA AATAA AAT-A-A AATA-A AATAA AATAA AATAA AAT-A-A AATA-A
105144780 AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA
105144800 TAAATAATAA
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
5 36 0.64
6 12 0.21
7 8 0.14
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (5 bp):
AATAA
Found at i:105144754 original size:10 final size:9
Alignment explanation
Indices: 105144729--105144824 Score: 72
Period size: 8 Copynumber: 10.2 Consensus size: 9
105144719 AGTAATAAAT
*
105144729 AATAAAATA
1 AATATAATA
105144738 AA-ATAATA
1 AATATAATA
105144746 AATACTAATAA
1 AATA-TAAT-A
*
105144757 AATAAAATA
1 AATATAATA
105144766 AA-ATAATA
1 AATATAATA
105144774 AATACTAATAA
1 AATA-TAAT-A
*
105144785 AATAAAATA
1 AATATAATA
105144794 AA-ATAATA
1 AATATAATA
105144802 AATAATAAATA
1 AAT-AT-AATA
*
105144813 ATAAATAATA
1 A-ATATAATA
105144823 AA
1 AA
105144825 AATTAAGAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
8 21 0.30
9 11 0.15
10 21 0.30
11 17 0.24
12 1 0.01
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (9 bp):
AATATAATA
Found at i:105144760 original size:28 final size:28
Alignment explanation
Indices: 105144729--105144805 Score: 154
Period size: 28 Copynumber: 2.8 Consensus size: 28
105144719 AGTAATAAAT
105144729 AATAAAATAAAATAATAAATACTAATAA
1 AATAAAATAAAATAATAAATACTAATAA
105144757 AATAAAATAAAATAATAAATACTAATAA
1 AATAAAATAAAATAATAAATACTAATAA
105144785 AATAAAATAAAATAATAAATA
1 AATAAAATAAAATAATAAATA
105144806 ATAAATAATA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.25
Consensus pattern (28 bp):
AATAAAATAAAATAATAAATACTAATAA
Found at i:105144842 original size:7 final size:7
Alignment explanation
Indices: 105144725--105144847 Score: 74
Period size: 7 Copynumber: 17.0 Consensus size: 7
105144715 ATAAAGTAAT
105144725 AAATAATA
1 AAATAA-A
105144733 AAATAAA
1 AAATAAA
105144740 ATAATAAA
1 A-AATAAA
* *
105144748 TACTAATA
1 AAATAA-A
105144756 AAAT--A
1 AAATAAA
105144761 AAATAAA
1 AAATAAA
105144768 ATAATAAA
1 A-AATAAA
* *
105144776 TACTAATA
1 AAATAA-A
105144784 AAAT--A
1 AAATAAA
105144789 AAATAAA
1 AAATAAA
105144796 ATAATAAA
1 A-AATAAA
*
105144804 TAATAAA
1 AAATAAA
*
105144811 TAATAAA
1 AAATAAA
*
105144818 TAATAAA
1 AAATAAA
*
105144825 AATTAAGA
1 AAATAA-A
105144833 AAAGTAAA
1 AAA-TAAA
105144841 AAATAAA
1 AAATAAA
105144848 GGTTGGGTTA
Statistics
Matches: 92, Mismatches: 12, Indels: 23
0.72 0.09 0.18
Matches are distributed among these distances:
5 10 0.11
7 42 0.46
8 37 0.40
9 3 0.03
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (7 bp):
AAATAAA
Found at i:105148523 original size:29 final size:29
Alignment explanation
Indices: 105148481--105148540 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
105148471 AATTTGTATC
105148481 ACTTCATCCCCTATTTATAGTACTAAGAA
1 ACTTCATCCCCTATTTATAGTACTAAGAA
105148510 ACTTCATCCCCTATTTATAGTACTAAGAA
1 ACTTCATCCCCTATTTATAGTACTAAGAA
105148539 AC
1 AC
105148541 CTAGTCTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.33
Consensus pattern (29 bp):
ACTTCATCCCCTATTTATAGTACTAAGAA
Found at i:105148623 original size:20 final size:19
Alignment explanation
Indices: 105148564--105148623 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 19
105148554 AATTAAATTC
105148564 TAAAAGATAAATACAAATCAA
1 TAAAAGATAAATA-AAAT-AA
*
105148585 T-AAAGATAATTAAAGATAA
1 TAAAAGATAAATAAA-ATAA
105148604 TAAAAGATAAATGAAAATAA
1 TAAAAGATAAAT-AAAATAA
105148624 ATCTTAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
19 5 0.15
20 25 0.74
21 4 0.12
ACGTcount: A:0.67, C:0.03, G:0.08, T:0.22
Consensus pattern (19 bp):
TAAAAGATAAATAAAATAA
Found at i:105149214 original size:13 final size:14
Alignment explanation
Indices: 105149191--105149220 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
105149181 ACTACGATTA
105149191 AAAATATAATATTT
1 AAAATATAATATTT
105149205 AAAA-ATAATATTT
1 AAAATATAATATTT
105149218 AAA
1 AAA
105149221 TATTAAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AAAATATAATATTT
Found at i:105152879 original size:132 final size:131
Alignment explanation
Indices: 105152640--105153161 Score: 469
Period size: 132 Copynumber: 4.0 Consensus size: 131
105152630 TGATTATACA
* * * *
105152640 TTTAAAAATTCTTTAAAACGAAGAC-GAGATTCGATATTTGGCAATTCGCAGAATAGTGCCCTAA
1 TTTAAAAATCCTTTAAAACGAAGGCAAAG-TTCGATATTTGGCAATTCGCAGAATCGTGCCCTAA
* * ** * *
105152704 CGTGTTGGGTTGCAATTTCGCGTTTGCTCGGAATAATCGAATATCCCTTCAAACTTTCACTCATG
65 CGTGTTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATCCCTTCAGA-TTTCACTCATG
*
105152769 CCT
129 TCT
* * * *
105152772 TTTAAAAATTCTTTAAAACGAAGGCAAAGTTTGATATTTGGCAATTCGCGGAATCGTACCCTAAC
1 TTTAAAAATCCTTTAAAACGAAGGCAAAGTTCGATATTTGGCAATTCGCAGAATCGTGCCCTAAC
* * * * * *
105152837 GTGTTGGGTTGTAATTTCTCGTTTGTTCAAAATAATCAAATATCCCTTCTAGATTCCATTCAGGT
66 GTGTTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATCCCTTC-AGATTTCACTCATGT
105152902 CT
130 CT
* * *** * * * *
105152904 TCTAAAAATCCTCTAAAACGAAGGCAATACG--CGGCGTTTGACAATTCG-GGAACCATGCCCTA
1 TTTAAAAATCCTTTAAAACGAAGGCAA-A-GTTCGATATTTGGCAATTCGCAGAATCGTGCCCTA
** ** * * * * *
105152966 TTGTGTTGGGTTGTGATTTCTCGTTTGTTCAAAACGATCGAATATTCTTTTAGGTTTTCACTCAT
64 ACGTGTTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATCCCTTCA-GATTTCACTCAT
105153031 GTCT
128 GTCT
* * * * * *
105153035 TTTAAGAAAACCCTTTAAAACAAAGGCTATGTTCGATGTTTGGCAATTC-AAGAATCGTGCCCTA
1 TTT-A-AAAATCCTTTAAAACGAAGGCAAAGTTCGATATTTGGCAATTCGCAGAATCGTGCCCTA
* * * * * *
105153099 TCGCGCTGGGTTGCAATCTCTCGTTTGTTCAAAACAATCGAATATCTCTTCGGAATTTCACTC
64 ACGTGTTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATCCCTTCAG-ATTTCACTC
105153162 GTATTTTCTA
Statistics
Matches: 313, Mismatches: 66, Indels: 21
0.78 0.17 0.05
Matches are distributed among these distances:
130 1 0.00
131 68 0.22
132 147 0.47
133 96 0.31
134 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (131 bp):
TTTAAAAATCCTTTAAAACGAAGGCAAAGTTCGATATTTGGCAATTCGCAGAATCGTGCCCTAAC
GTGTTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATCCCTTCAGATTTCACTCATGTC
T
Found at i:105153035 original size:131 final size:133
Alignment explanation
Indices: 105152830--105153149 Score: 331
Period size: 133 Copynumber: 2.4 Consensus size: 133
105152820 CGGAATCGTA
* * * *
105152830 CCCTAACGTGTTGGGTTGTAATTTCTCGTTTGTTCAAAATAATCAAATATCCCTTCTAGATTCCA
1 CCCTATCGTGTTGGGTTGTAATTTCTCGTTTGTTCAAAACAATCGAATATCTCTTCTAGATTCCA
* * * * **
105152895 TTCAGGTCTTCT-A-AAAATCCTCTAAAACGAAGGCAATACGCGGCGTTTGACAATTCGGGAACC
66 CTCAGGTCTTCTAAGAAAACCCTCTAAAACAAAGGCAATACGCGACGTTTGACAATTCAAGAACC
105152958 ATG
131 ATG
* * * * * *
105152961 CCCTATTGTGTTGGGTTGTGATTTCTCGTTTGTTCAAAACGATCGAATAT-TCTTTTAGGTTTTC
1 CCCTATCGTGTTGGGTTGTAATTTCTCGTTTGTTCAAAACAATCGAATATCTCTTCTA-GATTCC
* * * * *** * * *
105153025 ACTCATGTCTTTTAAGAAAACCCTTTAAAACAAAGGCTATGTTCGATGTTTGGCAATTCAAGAAT
65 ACTCAGGTCTTCTAAGAAAACCCTCTAAAACAAAGGCAATACGCGACGTTTGACAATTCAAGAAC
*
105153090 CGTG
130 CATG
* * * *
105153094 CCCTATCGCGCTGGGTTGCAATCTCTCGTTTGTTCAAAACAATCGAATATCTCTTC
1 CCCTATCGTGTTGGGTTGTAATTTCTCGTTTGTTCAAAACAATCGAATATCTCTTC
105153150 GGAATTTCAC
Statistics
Matches: 150, Mismatches: 35, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
130 5 0.03
131 58 0.39
132 1 0.01
133 82 0.55
134 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (133 bp):
CCCTATCGTGTTGGGTTGTAATTTCTCGTTTGTTCAAAACAATCGAATATCTCTTCTAGATTCCA
CTCAGGTCTTCTAAGAAAACCCTCTAAAACAAAGGCAATACGCGACGTTTGACAATTCAAGAACC
ATG
Found at i:105154699 original size:9 final size:10
Alignment explanation
Indices: 105154686--105154730 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
105154676 CTTTCTTTCC
105154686 TTTGCATTCA
1 TTTGCATTCA
105154696 -TTGCA-TCA
1 TTTGCATTCA
105154704 TTTGCATTGCA
1 TTTGCATT-CA
105154715 -TTGCA-TCA
1 TTTGCATTCA
105154723 TTTGCATT
1 TTTGCATT
105154731 AAATTTCCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
8 5 0.17
9 16 0.53
10 7 0.23
11 2 0.07
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (10 bp):
TTTGCATTCA
Found at i:105154718 original size:19 final size:18
Alignment explanation
Indices: 105154686--105154730 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 18
105154676 CTTTCTTTCC
105154686 TTTGCATTCATTGCATCA
1 TTTGCATTCATTGCATCA
105154704 TTTGCATTGCATTGCATCA
1 TTTGCATT-CATTGCATCA
105154723 TTTGCATT
1 TTTGCATT
105154731 AAATTTCCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (18 bp):
TTTGCATTCATTGCATCA
Found at i:105157287 original size:4 final size:4
Alignment explanation
Indices: 105157285--105157331 Score: 66
Period size: 4 Copynumber: 12.8 Consensus size: 4
105157275 TCCAAAAAAA
105157285 AAAG AAAG AAAG AAAG AAAG AAAG -AAG AAA- AAA- AAAG -AAG AAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
105157329 AAA
1 AAA
105157332 AGGAGAGGCC
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 12 0.30
4 28 0.70
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:105158388 original size:44 final size:44
Alignment explanation
Indices: 105158320--105159573 Score: 1212
Period size: 44 Copynumber: 28.5 Consensus size: 44
105158310 GGCGAATCTT
* * * ** *
105158320 GCAGATTTGGCATCTCTGTGTTGACAGAGAGCAGATTAAATATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * **
105158364 GCAGATTTGGCATCTCTGTATTGACAGAGATCAGATTAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
105158408 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
105158452 GCGGATTTGACGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * *
105158496 GCAGATTTGGCGTCTTTGTATCGGCGGAGAGTAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * * *** *
105158540 GCAGTTTTTGCGTCTATATAGCAGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * *
105158584 GCGGATTTGGCATCTCTGTAGCTT--CGGAGAGCAGATTGAAGATA
1 GCAGATTTGGCGTCTCTGTA--TTGGCAGAGAGCAGATCGAAGATA
* * * ** * *
105158628 ACAGATTTGGCATCTCTATAGCGGCGGAGAGCAAATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
** * **
105158672 ATAGATTTGGTGTCTCTGTAGCGGC-GAAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAG-AGAGCAGATCGAAGATA
* * ** * * *
105158716 GCAGATTTGGCATCTCTATAGCGGCGGAGAGCAGATCAAAAATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* **
105158760 GCAGATTTAGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
** * ** *
105158804 ATAGATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* ** *
105158848 GCAAATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * ** * * *
105158892 GCAAATTTAGCGTCTCTGTAGCGGCGGAGAGTAAATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * ** *
105158936 ACAGATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
105158980 GCAGATTTGGCGTCTCTGTATTGTCAGA-AGGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGA-GCAGATCGAAGATA
* * ** ** * *
105159024 ACAGATTTGGTGTCTCTGTAGCGGTGGAAAGCAGATAGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * ** * *** *
105159068 ACAAATTCAGCGTCTCTATAGCAGCAGAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* ** *
105159112 GCAGATTTGGCGTCTCTATAGCGGGAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * * * *
105159156 ACAGATTTGCCATCTCTGTGTTGGCGGAGAGCAGATCGAGGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
105159200 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
105159244 GCAGATTTGGCGTCTCTGTATTGTCAGAG-GACAGATCAAAAATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAG-CAGATCGAAGATA
* * * * *
105159288 GCATATTTGGCGTCTCTATATTGGCTGAGAGCAAATCGAGGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
**
105159332 GCAGATTTGGCAACTCTGTATTGGC-GAAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAG-AGAGCAGATCGAAGATA
* *
105159376 GCAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * *
105159420 GCAGATTTGGCGTCTCTGTATTGTCA-AAAGGCAAATTGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGA-GCAGATCGAAGATA
* *
105159464 GCAGATTTGGAGTCTCTGTATTGTCAGAG-GACAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAG-CAGATCGAAGATA
* * * *
105159508 GCAGATTTGGCATCTCTGTGTTGACAGAGAGCAGATCAAAGAT-
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
105159551 GACAGATTTGGCATCTCTGTATT
1 G-CAGATTTGGCGTCTCTGTATT
105159574 ACAGTGGAAC
Statistics
Matches: 1029, Mismatches: 164, Indels: 34
0.84 0.13 0.03
Matches are distributed among these distances:
43 7 0.01
44 1016 0.99
45 6 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (44 bp):
GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
Found at i:105162991 original size:131 final size:131
Alignment explanation
Indices: 105162621--105163130 Score: 504
Period size: 132 Copynumber: 3.9 Consensus size: 131
105162611 TGATTATACA
* * * * * * *
105162621 TTTAAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCAGAATAGTGCCCTAAC
1 TTTAAAAATCCTTTAAAACGAAGGCAATATTCGATGTTTGGCAATTCG-GGAATCGTGCCCTAAC
* * ** * *
105162686 GTGTTGGGTTGCAATTTCGCGTTTGCTCGGAATAATCGAATATCCCTTC-AAACTTTCACTCATG
65 GTGTTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATCCCTTCTAGA-TTTCACTCATG
*
105162750 CCT
129 TCT
* * * *
105162753 TTTAAAAATTCTTTAAAACGAAGGCAA-AGTTTGATATTTGGCAATTCGCGGAATCGTACCCTAA
1 TTTAAAAATCCTTTAAAACGAAGGCAATA-TTCGATGTTTGGCAATTCG-GGAATCGTGCCCTAA
* * * * * *
105162817 CGTGTTGGGTTGCAATTTCTCATTTGTTCAAAATAATCAAATATCCCTTCTAGATTCCATTCAGG
64 CGTGTTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATCCCTTCTAGATTTCACTCATG
105162882 TCT
129 TCT
* * * * * * *
105162885 TCTAAAAATCCTCTAAAACGAAGGCAATACTCGGTGTTTGACAATTCGGGAATCATGCCCTATCG
1 TTTAAAAATCCTTTAAAACGAAGGCAATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTAACG
** * * * *
105162950 TGTTGGGTTGTGATTTCTCGTTTGTTCAAAACGATCGAATAT-TCTTTTAGGTTTTCACTCATGT
66 TGTTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATCCCTTCTA-GATTTCACTCATGT
105163014 CT
130 CT
* * * * ** *
105163016 TTTAAGAAAACCCTTTAAAACAAAGGCTATGTTCGATGTTTGGCAATTCAAGAATCGTGCCCTAT
1 TTT-A-AAAATCCTTTAAAACGAAGGCAATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTAA
* * * *
105163081 CGCGCTGGGTTGCAATCTCTCGTTTGTTCAAAACAATCGAATATCTCTTC
64 CGTGTTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATCCCTTC
105163131 GGAATTTCAC
Statistics
Matches: 312, Mismatches: 59, Indels: 12
0.81 0.15 0.03
Matches are distributed among these distances:
130 5 0.02
131 65 0.21
132 149 0.48
133 89 0.29
134 4 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (131 bp):
TTTAAAAATCCTTTAAAACGAAGGCAATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTAACG
TGTTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATCCCTTCTAGATTTCACTCATGTC
T
Found at i:105168148 original size:29 final size:29
Alignment explanation
Indices: 105168086--105168142 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
105168076 AAAAAACTTT
* *
105168086 AAGAATTGAGAATTTTGAATAAAAAAATC
1 AAGAATTGACAATTTAGAATAAAAAAATC
105168115 AAGAATTGACAATTTAGAATAAAAAAAT
1 AAGAATTGACAATTTAGAATAAAAAAAT
105168143 TGAGAACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.58, C:0.04, G:0.12, T:0.26
Consensus pattern (29 bp):
AAGAATTGACAATTTAGAATAAAAAAATC
Found at i:105170320 original size:22 final size:21
Alignment explanation
Indices: 105170293--105170339 Score: 76
Period size: 22 Copynumber: 2.2 Consensus size: 21
105170283 TTTATATGTT
105170293 TTTATTTTTAAAAATTTAAGAA
1 TTTATTTTTAAAAATTTAA-AA
*
105170315 TTTATTTTTTAAAATTTAAAA
1 TTTATTTTTAAAAATTTAAAA
105170336 TTTA
1 TTTA
105170340 AATTTAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
TTTATTTTTAAAAATTTAAAA
Found at i:105170332 original size:7 final size:7
Alignment explanation
Indices: 105170303--105170352 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
105170293 TTTATTTTTA
105170303 AAAATTT
1 AAAATTT
105170310 AAGAATTT
1 AA-AATTT
***
105170318 ATTTTTT
1 AAAATTT
105170325 AAAATTT
1 AAAATTT
105170332 AAAATTT
1 AAAATTT
105170339 -AAATTT
1 AAAATTT
105170345 -AAATTT
1 AAAATTT
105170351 AA
1 AA
105170353 CACCTATAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 12 0.34
7 17 0.49
8 6 0.17
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (7 bp):
AAAATTT
Found at i:105170350 original size:29 final size:27
Alignment explanation
Indices: 105170261--105170346 Score: 77
Period size: 29 Copynumber: 3.0 Consensus size: 27
105170251 GTCTTTCTAG
105170261 TTTTTGTAAATTTAAAATTT-AATTTATA
1 TTTTT-TAAATTTAAAATTTAAATTTA-A
**
105170289 TGTTTTTATTTTTAAAAATTTAAGAATTT-A
1 T-TTTTTAAATTT-AAAATTT-A-AATTTAA
105170319 TTTTTTAAAATTTAAAATTTAAATTTAA
1 TTTTTT-AAATTTAAAATTTAAATTTAA
105170347 ATTTAACACC
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
27 5 0.11
28 8 0.17
29 23 0.49
30 6 0.13
32 5 0.11
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (27 bp):
TTTTTTAAATTTAAAATTTAAATTTAA
Found at i:105171449 original size:21 final size:21
Alignment explanation
Indices: 105171425--105171465 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
105171415 CGATTAATTC
*
105171425 AGTTTTAATTAAATTTTTCTT
1 AGTTTTAATTAAAATTTTCTT
105171446 AGTTTTAATTAAAATTTTCT
1 AGTTTTAATTAAAATTTTCT
105171466 AATTGTGGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (21 bp):
AGTTTTAATTAAAATTTTCTT
Found at i:105173207 original size:19 final size:19
Alignment explanation
Indices: 105173183--105173223 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
105173173 ATAGAGGATG
105173183 AGGCTAGGTTGTAGAGGCT
1 AGGCTAGGTTGTAGAGGCT
105173202 AGGCTAGGTTGTAGAGGCT
1 AGGCTAGGTTGTAGAGGCT
105173221 AGG
1 AGG
105173224 TTGTTGAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.22, C:0.10, G:0.44, T:0.24
Consensus pattern (19 bp):
AGGCTAGGTTGTAGAGGCT
Found at i:105181600 original size:28 final size:28
Alignment explanation
Indices: 105181560--105181621 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
105181550 AAGAAAGAAG
*
105181560 CATTTCTACTATGATAGAAATGTCTGGC
1 CATTTTTACTATGATAGAAATGTCTGGC
105181588 CATTTTTACTATGATAGAAATGTCTGGC
1 CATTTTTACTATGATAGAAATGTCTGGC
105181616 CATTTT
1 CATTTT
105181622 GAAAAGCAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (28 bp):
CATTTTTACTATGATAGAAATGTCTGGC
Found at i:105186164 original size:15 final size:15
Alignment explanation
Indices: 105186144--105186175 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
105186134 TATATAGACT
105186144 TAAATAACACTAAGA
1 TAAATAACACTAAGA
105186159 TAAATAACACTAAGA
1 TAAATAACACTAAGA
105186174 TA
1 TA
105186176 GATGCAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.12, G:0.06, T:0.22
Consensus pattern (15 bp):
TAAATAACACTAAGA
Found at i:105186226 original size:30 final size:30
Alignment explanation
Indices: 105186192--105186254 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
105186182 ACTTAACAAG
105186192 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
*
105186222 CAAATACCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
105186252 CAA
1 CAA
105186255 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:105188253 original size:4 final size:4
Alignment explanation
Indices: 105188244--105188274 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
105188234 GATCGAACAA
105188244 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
105188275 ATTACAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:105195005 original size:16 final size:16
Alignment explanation
Indices: 105194986--105195016 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
105194976 TATTTTAGAG
105194986 CATATAAATTTGAAAC
1 CATATAAATTTGAAAC
*
105195002 CATATATATTTGAAA
1 CATATAAATTTGAAA
105195017 ACTCTTTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (16 bp):
CATATAAATTTGAAAC
Found at i:105197882 original size:12 final size:12
Alignment explanation
Indices: 105197865--105197902 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
105197855 CGGCCCGCCC
105197865 ATATTAATTTTT
1 ATATTAATTTTT
105197877 ATATT-ATTTTT
1 ATATTAATTTTT
*
105197888 ATA-TAATTTTA
1 ATATTAATTTTT
105197899 ATAT
1 ATAT
105197903 ATATATAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
10 1 0.04
11 17 0.74
12 5 0.22
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:105198055 original size:30 final size:30
Alignment explanation
Indices: 105198019--105198076 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
105198009 CAATTTAACA
*
105198019 AGCAAATGCCTCTAAAATAATAACAAAATT
1 AGCAAATGCCTCTAAAATAATAAAAAAATT
* *
105198049 AGCAAATGTCTTTAAAATAATAAAAAAA
1 AGCAAATGCCTCTAAAATAATAAAAAAA
105198077 ATTAACAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.57, C:0.12, G:0.07, T:0.24
Consensus pattern (30 bp):
AGCAAATGCCTCTAAAATAATAAAAAAATT
Found at i:105198139 original size:22 final size:22
Alignment explanation
Indices: 105198114--105198156 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
105198104 TATCCAAACA
105198114 ATAACAACAAAATAGTAGCAAT
1 ATAACAACAAAATAGTAGCAAT
* **
105198136 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
105198157 AATAGGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAT
Found at i:105198160 original size:11 final size:11
Alignment explanation
Indices: 105198121--105198161 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
105198111 ACAATAACAA
105198121 CAAAATAGTAG
1 CAAAATAGTAG
* *
105198132 CAATATAATAG
1 CAAAATAGTAG
*
105198143 TAAAATAGTAG
1 CAAAATAGTAG
105198154 CAAAATAG
1 CAAAATAG
105198162 GAAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:105204671 original size:33 final size:33
Alignment explanation
Indices: 105204634--105204737 Score: 163
Period size: 33 Copynumber: 3.2 Consensus size: 33
105204624 CTTCTTCATC
* * *
105204634 AGAGTCTCTTTCTTCCACTGGATCCTCCCTACT
1 AGAGTCTCTTTCTTTCACTGAATCCTCTCTACT
105204667 AGAGTCTCTTTCTTTCACTGAATCCTCTCTACT
1 AGAGTCTCTTTCTTTCACTGAATCCTCTCTACT
* *
105204700 AGAGTTTCCTTCTTTCACTGAATCCTCTCTACT
1 AGAGTCTCTTTCTTTCACTGAATCCTCTCTACT
105204733 AGAGT
1 AGAGT
105204738 TTCCTTCTAC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 66 1.00
ACGTcount: A:0.18, C:0.31, G:0.12, T:0.39
Consensus pattern (33 bp):
AGAGTCTCTTTCTTTCACTGAATCCTCTCTACT
Found at i:105206575 original size:26 final size:26
Alignment explanation
Indices: 105206539--105206592 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
105206529 GATTTCATCT
*
105206539 ATGTTTACTAGATTAATGACTAATTG
1 ATGTTCACTAGATTAATGACTAATTG
*
105206565 ATGTTCACTAGATTGATGACTAATTG
1 ATGTTCACTAGATTAATGACTAATTG
105206591 AT
1 AT
105206593 TAAAACCGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (26 bp):
ATGTTCACTAGATTAATGACTAATTG
Found at i:105214999 original size:19 final size:20
Alignment explanation
Indices: 105214975--105215014 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
105214965 AGATAAATTT
*
105214975 TCATAAAATTT-GAATTTCA
1 TCATAAAATTTAAAATTTCA
*
105214994 TCATAATATTTAAAATTTCA
1 TCATAAAATTTAAAATTTCA
105215014 T
1 T
105215015 TTTTTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.42, C:0.10, G:0.03, T:0.45
Consensus pattern (20 bp):
TCATAAAATTTAAAATTTCA
Found at i:105222787 original size:9 final size:10
Alignment explanation
Indices: 105222776--105222837 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 10
105222766 GGTACAAATA
105222776 AATAAATAA-
1 AATAAATAAT
*
105222785 AATGCAATAAT
1 AAT-AAATAAT
105222796 AATGATAATAAT
1 AAT-A-AATAAT
105222808 AAT-AATAAT
1 AATAAATAAT
105222817 AATAAACTCAAT
1 AATAAA-T-AAT
105222829 AATAAATAA
1 AATAAATAA
105222838 AATGATAGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
9 12 0.27
10 9 0.20
11 6 0.13
12 18 0.40
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (10 bp):
AATAAATAAT
Found at i:105222833 original size:3 final size:3
Alignment explanation
Indices: 105222790--105222821 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
105222780 AATAAAATGC
*
105222790 AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
105222822 ACTCAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:105224329 original size:87 final size:87
Alignment explanation
Indices: 105224219--105224380 Score: 218
Period size: 87 Copynumber: 1.9 Consensus size: 87
105224209 AGACCTGATG
* * * * *
105224219 CGATCTACTCTGCTGTAACCTCAGAGAGATAAGATC-CTTTATTTTAATCCGCTCCACTGTAACT
1 CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTC-TGACTTCAATCCGCTCCACTGTAACC
105224283 TCAGGGAGATAGGATAGTGTCTT
65 TCAGGGAGATAGGATAGTGTCTT
* * * * *
105224306 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCT
1 CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCT
105224371 CAGGGAGATA
66 CAGGGAGATA
105224381 AGATCTGAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 63 0.98
88 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (87 bp):
CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCT
CAGGGAGATAGGATAGTGTCTT
Found at i:105224441 original size:131 final size:131
Alignment explanation
Indices: 105224306--105224604 Score: 324
Period size: 131 Copynumber: 2.3 Consensus size: 131
105224296 ATAGTGTCTT
* * *
105224306 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC-TGGCTTCAATCTGCTCCACTGTAACC
1 CGATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTTGACTTCAATCCGCTCCACTGTAACC
*
105224370 TCAGGGAGATAAGATCTGAAAT-TCTTTAG-TCTGTTCCACTGTAATCTCAGGGAAATAAGA-C-
65 TCAGGGAGATAAGA--T--AATGTC-TTAGATCTGCTCCACTGTAATCTCAGGGAAATAAGATCT
105224431 CTGG-TG
125 CTGGCTG
* * * * *
105224437 CGATCTGCTCTACTGTAACTTCAGGGAGATAAGATC-CTTTATTTTAATCCGCTCCACTGTAACT
1 CGATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCTCTTGACTTCAATCCGCTCCACTGTAACC
* * * * *
105224501 TCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGC
65 TCAGGGAGATAAGATAATGTCTTAGATCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTGGC
*
105224566 TT
130 TG
* *
105224568 CAATCTGCTCCACTGTGACCTCAGGGAGATAAGATCT
1 CGATCTGCTCCACTGT-AACTCAGGGAGATAAGATCT
105224605 GAAATTCTTT
Statistics
Matches: 141, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
127 5 0.04
128 30 0.21
129 2 0.01
130 6 0.04
131 96 0.68
132 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (131 bp):
CGATCTGCTCCACTGTAACTCAGGGAGATAAGATCTCTTGACTTCAATCCGCTCCACTGTAACCT
CAGGGAGATAAGATAATGTCTTAGATCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTGGCT
G
Found at i:105224443 original size:87 final size:90
Alignment explanation
Indices: 105224309--105224560 Score: 250
Period size: 87 Copynumber: 2.9 Consensus size: 90
105224299 GTGTCTTCGA
* * *
105224309 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAG
1 TCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTGGCTGCAATCTGCTCCACTGTAACCTCAG
105224374 GGAGATAAGATCTGAAATTCTTTAG
66 GGAGATAAGATCTGAAATTCTTTAG
* * * *
105224399 TCTGTTCCACTGTAATCTCAGGGAAATAAGA-C-CTGG-TGCGATCTGCTCTACTGTAACTTCAG
1 TCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTGGCTGCAATCTGCTCCACTGTAACCTCAG
** *
105224461 GGAGATAAGATCCT-TTA-T-TTTAA
66 GGAGATAAGAT-CTGAAATTCTTTAG
* * * ** * * * * *
105224484 TCCGCTCCACTGTAA-CTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCGCTGTAATCTCA
1 TCTGCTCCACTGTAATC-TCAGGGAAATAAGATCTCTGGCTGCAATCTGCTCCACTGTAACCTCA
105224547 GGGAGATAAGATCT
65 GGGAGATAAGATCT
105224561 CTGGCTTCAA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
84 1 0.01
85 29 0.21
86 5 0.04
87 66 0.49
88 6 0.04
89 1 0.01
90 28 0.21
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (90 bp):
TCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTGGCTGCAATCTGCTCCACTGTAACCTCAG
GGAGATAAGATCTGAAATTCTTTAG
Found at i:105224563 original size:218 final size:218
Alignment explanation
Indices: 105224179--105224650 Score: 847
Period size: 218 Copynumber: 2.2 Consensus size: 218
105224169 TGTTGTGTTC
* * *
105224179 AGTCTATTCCACTG-CATCTTCAGGGAAATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAG
1 AGTCTGTTCCACTGTAATC-TCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAG
105224243 AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCG
65 AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCG
105224308 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
130 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
105224373 GGGAGATAAGATCTGAAATTCTTT
195 GGGAGATAAGATCTGAAATTCTTT
* * * *
105224397 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGG
1 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGA
105224462 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGA
66 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGA
*
105224527 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTGACCTCAG
131 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAG
105224592 GGAGATAAGATCTGAAATTCTTT
196 GGAGATAAGATCTGAAATTCTTT
*
105224615 AGTCTGTTCCACTGTAATCTCAGGGGAATAAGACCT
1 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCT
105224651 TTTATAATGA
Statistics
Matches: 244, Mismatches: 9, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
218 241 0.99
219 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (218 bp):
AGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGA
GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGA
TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAG
GGAGATAAGATCTGAAATTCTTT
Found at i:105224578 original size:87 final size:87
Alignment explanation
Indices: 105224269--105224598 Score: 242
Period size: 87 Copynumber: 3.8 Consensus size: 87
105224259 ATTTTAATCC
* ** * * * * *
105224269 GCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAACTTCAGGGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCAGGGA
* ** * *
105224333 GATAAGATCTCTGGCTTCAATCT
66 GATAGGAT-AGTGTCTTCGATCT
* * * * * *
105224356 GCTCCACTGTAACCTCAGGGAGATAAGAT-C-TGAAATTCTTTAGTCTGTTCCACTGTAATCTCA
1 GCTCCACTGTAACTTCAGGGAGATAAGATCCTTG--A--CTTCAATCCGCTCCACTGTAACCTCA
* * ** * *
105224419 GGGAAATAAGA-CCTG-GTGCGATCT
62 GGGAGATAGGATAGTGTCTTCGATCT
* * * * *
105224443 GCTCTACTGTAACTTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGA
1 GCTCCACTGTAACTTCAGGGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCAGGGA
105224508 GATAGGATAGTGTCTTCGATCT
66 GATAGGATAGTGTCTTCGATCT
* * * *
105224530 GCTCCGCTGTAA-TCTCAGGGAGATAAGAT-CTCTGGCTTCAATCTGCTCCACTGTGACCTCAGG
1 GCTCCACTGTAACT-TCAGGGAGATAAGATCCT-TGACTTCAATCCGCTCCACTGTAACCTCAGG
105224593 GAGATA
64 GAGATA
105224599 AGATCTGAAA
Statistics
Matches: 195, Mismatches: 38, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
85 29 0.15
86 7 0.04
87 123 0.63
88 4 0.02
89 1 0.01
90 31 0.16
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (87 bp):
GCTCCACTGTAACTTCAGGGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCAGGGA
GATAGGATAGTGTCTTCGATCT
Found at i:105224604 original size:44 final size:44
Alignment explanation
Indices: 105224231--105224604 Score: 296
Period size: 44 Copynumber: 8.6 Consensus size: 44
105224221 ATCTACTCTG
* *** * *
105224231 CTGTAACCTCAGAGAGATAAGATC-CTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTC-TGGCTTCAATCTGCTCCA
* * ** * * *
105224275 CTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
*
105224318 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
* * * * *
105224362 CTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTTAGTCTGTTCCA
1 CTGTAACCTCAGGGAGATAAGATCT---CTGGCTTCAATCTGCTCCA
* * * * *
105224408 CTGTAATCTCAGGGAAATAAGA-C-CTGG-TGCGATCTGCTCTA
1 CTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
* *** * *
105224449 CTGTAACTTCAGGGAGATAAGATC-CTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTC-TGGCTTCAATCTGCTCCA
* * ** * * *
105224493 CTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
*
105224536 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
*
105224580 CTGTGACCTCAGGGAGATAAGATCT
1 CTGTAACCTCAGGGAGATAAGATCT
105224605 GAAATTCTTT
Statistics
Matches: 255, Mismatches: 64, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
41 28 0.11
42 2 0.01
43 63 0.25
44 128 0.50
45 1 0.00
46 32 0.13
47 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (44 bp):
CTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
Found at i:105225855 original size:1 final size:1
Alignment explanation
Indices: 105225849--105225874 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
105225839 CCAAAGTCCC
105225849 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
105225875 AGGAAGCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:105237284 original size:9 final size:10
Alignment explanation
Indices: 105237273--105237334 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 10
105237263 GGTACAAATA
105237273 AATAAATAA-
1 AATAAATAAT
*
105237282 AATGCAATAAT
1 AAT-AAATAAT
105237293 AATGATAATAAT
1 AAT-A-AATAAT
105237305 AAT-AATAAT
1 AATAAATAAT
105237314 AATAAACTCAAT
1 AATAAA-T-AAT
105237326 AATAAATAA
1 AATAAATAA
105237335 AATGATAGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
9 12 0.27
10 9 0.20
11 6 0.13
12 18 0.40
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (10 bp):
AATAAATAAT
Found at i:105237330 original size:3 final size:3
Alignment explanation
Indices: 105237287--105237318 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
105237277 AATAAAATGC
*
105237287 AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
105237319 ACTCAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:105239747 original size:19 final size:20
Alignment explanation
Indices: 105239705--105239754 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
105239695 ATTACAAAAT
*
105239705 AATTCAAAATAATTTTTAAA
1 AATTCAAAATAAATTTTAAA
*
105239725 AATTTAAAATAAATTTT-AA
1 AATTCAAAATAAATTTTAAA
105239744 AATTCAAAATA
1 AATTCAAAATA
105239755 TCAAACAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (20 bp):
AATTCAAAATAAATTTTAAA
Found at i:105245795 original size:52 final size:52
Alignment explanation
Indices: 105245667--105245825 Score: 162
Period size: 52 Copynumber: 3.1 Consensus size: 52
105245657 TGACAGAAAA
* * * *
105245667 GATGTGATATATGTTTCCGTATAAGACCATAGCCGAGCTATGGCATCGGTAC
1 GATGTGATATATGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
* * * * *
105245719 AATGTGAT-T-CGCGTTCCCGCATAAGACCATAGCTGGGCTAT-GCATCGGTGT
1 GATGTGATATATG-ATT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
** *
105245770 GATGTGATAATATGATTCCGTATAAGACCATATTTGGGATATGGCATCGGTAT
1 GATGTGAT-ATATGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
105245823 GAT
1 GAT
105245826 ATGTGATCCG
Statistics
Matches: 85, Mismatches: 16, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
50 1 0.01
51 18 0.21
52 50 0.59
53 15 0.18
54 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (52 bp):
GATGTGATATATGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
Found at i:105267830 original size:14 final size:13
Alignment explanation
Indices: 105267809--105267837 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
105267799 TAAATACTAT
105267809 AATTTTTTTTCAA
1 AATTTTTTTTCAA
105267822 AATTTTTTTTCAA
1 AATTTTTTTTCAA
105267835 AAT
1 AAT
105267838 CACTATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (13 bp):
AATTTTTTTTCAA
Found at i:105270110 original size:19 final size:19
Alignment explanation
Indices: 105270086--105270125 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
105270076 GATATTGATT
105270086 GAATTTATTTCCAATTTTC
1 GAATTTATTTCCAATTTTC
105270105 GAATTTATTTCCAATTTTC
1 GAATTTATTTCCAATTTTC
105270124 GA
1 GA
105270126 CATTCATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.50
Consensus pattern (19 bp):
GAATTTATTTCCAATTTTC
Found at i:105276358 original size:48 final size:48
Alignment explanation
Indices: 105276246--105276378 Score: 169
Period size: 48 Copynumber: 2.8 Consensus size: 48
105276236 TTCAGGTACG
* **
105276246 AGTTCCCTTGAGTTGGCTTTAGGCCATGGTATAGGTA-TTCCGAGCGA
1 AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGTACTTCCGAGCGA
** * **
105276293 AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGTACTTTGGTGTTA
1 AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGTACTTCCGAGCGA
* *
105276341 GGTTACCTTGAGTTGGCTTCGAGCCATGGTATAGGTAC
1 AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGTAC
105276379 CTATCGTATG
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 34 0.45
48 41 0.55
ACGTcount: A:0.18, C:0.17, G:0.31, T:0.34
Consensus pattern (48 bp):
AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGTACTTCCGAGCGA
Found at i:105281269 original size:50 final size:50
Alignment explanation
Indices: 105281119--105281305 Score: 232
Period size: 50 Copynumber: 3.7 Consensus size: 50
105281109 CTGGTACGCA
* * * ** * *
105281119 TAGTAGCTTGCACTTAGTACTACACATGCGA-CCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGATCTAACCATCTGATACACG
* *
105281168 TAGTAGCCTGCACTTAGTACTACACAACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACT-----ACACACGCGATCTAACCATCTGATACACG
105281223 TAGTAGCCTGCACTTAGTACTACACACGCGATCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGATCTAACCATCTGATACACG
*
105281273 TAGTAGCCTGCACTTAGTACTACACACGTGATC
1 TAGTAGCCTGCACTTAGTACTACACACGCGATC
105281306 GAAGTTATCG
Statistics
Matches: 121, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
49 20 0.17
50 59 0.49
54 8 0.07
55 34 0.28
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGATCTAACCATCTGATACACG
Found at i:105282584 original size:12 final size:12
Alignment explanation
Indices: 105282567--105282596 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
105282557 CTGAGAGGTA
*
105282567 GAGTTTGGTATT
1 GAGTTTGATATT
105282579 GAGTTTGATATT
1 GAGTTTGATATT
105282591 GAGTTT
1 GAGTTT
105282597 TTCGCCTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (12 bp):
GAGTTTGATATT
Found at i:105286332 original size:40 final size:41
Alignment explanation
Indices: 105286222--105286337 Score: 164
Period size: 40 Copynumber: 2.9 Consensus size: 41
105286212 TGAGTTACCA
* * * *
105286222 TAGTGAATCAGGAACAAATCCAATCCAC-TTAATATATTTC
1 TAGTGAATCAGGAATAAATCCTATTCACTTTAATTTATTTC
*
105286262 TAGTGAATCAGGAATAAATCCTATTCACTTTAATTTCTTT-
1 TAGTGAATCAGGAATAAATCCTATTCACTTTAATTTATTTC
105286302 TAGTGAATCAGGAATAAATCCTATTCACTTTTAATT
1 TAGTGAATCAGGAATAAATCCTATTCAC-TTTAATT
105286338 CTCGAGAAGG
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
40 53 0.77
41 16 0.23
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (41 bp):
TAGTGAATCAGGAATAAATCCTATTCACTTTAATTTATTTC
Found at i:105287354 original size:14 final size:14
Alignment explanation
Indices: 105287337--105287369 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
105287327 ATAATTTTCA
105287337 TAATTTAATTTATT
1 TAATTTAATTTATT
*
105287351 TAATTTACTTTATT
1 TAATTTAATTTATT
105287365 TAATT
1 TAATT
105287370 AATATAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (14 bp):
TAATTTAATTTATT
Found at i:105291878 original size:12 final size:12
Alignment explanation
Indices: 105291861--105291894 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
105291851 ATATGGTTGT
105291861 TTAATTATTTAC
1 TTAATTATTTAC
105291873 TTAATTATTTAC
1 TTAATTATTTAC
105291885 TTAATTATTT
1 TTAATTATTT
105291895 TTATTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (12 bp):
TTAATTATTTAC
Found at i:105293778 original size:20 final size:22
Alignment explanation
Indices: 105293748--105293795 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
105293738 GAATATGCTG
*
105293748 TAAATTGAAAG-TTTTTGATAGA
1 TAAA-TGAAAGATTATTGATAGA
105293770 -AAATGAAAGATTATTGATAGA
1 TAAATGAAAGATTATTGATAGA
105293791 TAAAT
1 TAAAT
105293796 CACTTTTACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 6 0.26
21 13 0.57
22 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.35
Consensus pattern (22 bp):
TAAATGAAAGATTATTGATAGA
Found at i:105294526 original size:33 final size:33
Alignment explanation
Indices: 105294483--105294641 Score: 144
Period size: 33 Copynumber: 4.8 Consensus size: 33
105294473 CGGCTATCGA
*
105294483 ATATGTAAAGGAAAGGTATACTTTGTGTATACC
1 ATATGAAAAGGAAAGGTATACTTTGTGTATACC
** * * * *
105294516 ATATGAAAAGGCTATGTACACTATGTGTGTA-C
1 ATATGAAAAGGAAAGGTATACTTTGTGTATACC
* ***
105294548 ACT-TGGAAAGGCTGGGTATACTTTGTGTATACC
1 A-TATGAAAAGGAAAGGTATACTTTGTGTATACC
* *
105294581 ATATAAAAAGGAAGGGTATACTTTGTGTATACC
1 ATATGAAAAGGAAAGGTATACTTTGTGTATACC
* *
105294614 ACT-TGAAAAGGAAAGGTACACTATGTGT
1 A-TATGAAAAGGAAAGGTATACTTTGTGT
105294642 GTACACTTGA
Statistics
Matches: 101, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
32 25 0.25
33 75 0.74
34 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (33 bp):
ATATGAAAAGGAAAGGTATACTTTGTGTATACC
Found at i:105294608 original size:65 final size:66
Alignment explanation
Indices: 105294497--105294624 Score: 170
Period size: 65 Copynumber: 2.0 Consensus size: 66
105294487 GTAAAGGAAA
* * * * *
105294497 GGTATACTTTGTGTATACCATATGAAAAGGCTATGTACACTATGTGTGTA-CACTTGGAAAGGCT
1 GGTATACTTTGTGTATACCATATAAAAAGGCAAGGTACACTATGTGTATACCACTTGAAAAGGCT
105294561 G
66 G
* *
105294562 GGTATACTTTGTGTATACCATATAAAAAGG-AAGGGTATACTTTGTGTATACCACTTGAAAAGG
1 GGTATACTTTGTGTATACCATATAAAAAGGCAA-GGTACACTATGTGTATACCACTTGAAAAGG
105294625 AAAGGTACAC
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
64 1 0.02
65 42 0.78
66 11 0.20
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.32
Consensus pattern (66 bp):
GGTATACTTTGTGTATACCATATAAAAAGGCAAGGTACACTATGTGTATACCACTTGAAAAGGCT
G
Found at i:105294669 original size:98 final size:98
Alignment explanation
Indices: 105294489--105294673 Score: 264
Period size: 98 Copynumber: 1.9 Consensus size: 98
105294479 TCGAATATGT
** * *
105294489 AAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGCTATGTACACTATGTGTGTACACTTGG
1 AAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTACACTATGTGTGTACACTTGA
* *
105294554 AAAGGCTGGGTATACTTTGTGTATACCATATAA
66 AAAGGCTAGGTACACTTTGTGTATACCATATAA
*
105294587 AAAGGAAGGGTATACTTTGTGTATACCACT-TGAAAAGGAAAGGTACACTATGTGTGTACACTTG
1 AAAGGAAAGGTATACTTTGTGTATACCA-TATGAAAAGGAAAGGTACACTATGTGTGTACACTTG
* * *
105294651 AAAAGGTTATGTGCACTTTGTGT
65 AAAAGGCTAGGTACACTTTGTGT
105294674 GTACAAATTG
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
98 75 0.99
99 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (98 bp):
AAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTACACTATGTGTGTACACTTGA
AAAGGCTAGGTACACTTTGTGTATACCATATAA
Found at i:105294685 original size:33 final size:32
Alignment explanation
Indices: 105294502--105294731 Score: 162
Period size: 33 Copynumber: 7.0 Consensus size: 32
105294492 GGAAAGGTAT
* *
105294502 ACTTTGTGTATAC-CATATGAAAAGGCTATGTAC
1 ACTTTGTGTGTACAC-T-TGAAAAGGATATGTAC
* * * ** *
105294535 ACTATGTGTGTACACTTGGAAAGGCTGGGTAT
1 ACTTTGTGTGTACACTTGAAAAGGATATGTAC
* * * *
105294567 ACTTTGTGTATAC-CATATAAAAAGGA-AGGGTAT
1 ACTTTGTGTGTACAC-T-TGAAAAGGATA-TGTAC
* * *
105294600 ACTTTGTGTATACCACTTGAAAAGGAAAGGTAC
1 ACTTTGTGTGTA-CACTTGAAAAGGATATGTAC
* * *
105294633 ACTATGTGTGTACACTTGAAAAGGTTATGTGC
1 ACTTTGTGTGTACACTTGAAAAGGATATGTAC
* *
105294665 ACTTTGTGTGTACAAATTGAAAAGGGTATGTAC
1 ACTTTGTGTGTAC-ACTTGAAAAGGATATGTAC
*
105294698 ACTTCGTGTGTACTACTTGAAAAAGGA-ATGTAC
1 ACTTTGTGTGTAC-ACTTG-AAAAGGATATGTAC
105294731 A
1 A
105294732 TCTCGGGTGT
Statistics
Matches: 160, Mismatches: 28, Indels: 18
0.78 0.14 0.09
Matches are distributed among these distances:
31 1 0.01
32 52 0.32
33 96 0.60
34 10 0.06
35 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (32 bp):
ACTTTGTGTGTACACTTGAAAAGGATATGTAC
Found at i:105294731 original size:98 final size:98
Alignment explanation
Indices: 105294489--105294731 Score: 233
Period size: 98 Copynumber: 2.5 Consensus size: 98
105294479 TCGAATATGT
* * * **
105294489 AAAGGAAAGGTATACTTTGTGTATACCA-TATGAAAAGGCTATGTACACTATGTGTGTACACTTG
1 AAAGGAAGGGTACACTTCGTGTATACCACT-TGAAAAGGAAATGTACACTATGTGTGTACACTTG
* * * *
105294553 GAAAGGCTGGGTATACTTTGTGTATACCATATAA
65 AAAAGGCTAGGTACACTTTGTGTATACAATATAA
* * *
105294587 AAAGGAAGGGTATACTTTGTGTATACCACTTGAAAAGGAAAGGTACACTATGTGTGTACACTTGA
1 AAAGGAAGGGTACACTTCGTGTATACCACTTGAAAAGGAAATGTACACTATGTGTGTACACTTGA
* * * *
105294652 AAAGGTTATGTGCACTTTGTGTGTACAA-ATTGAA
66 AAAGGCTAGGTACACTTTGTGTATACAATA-T-AA
* * * * *
105294686 AAGGGTA-TGTACACTTCGTGTGTACTACTTGAAAAAGG-AATGTACA
1 AAAGGAAGGGTACACTTCGTGTATACCACTTG-AAAAGGAAATGTACA
105294732 TCTCGGGTGT
Statistics
Matches: 121, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
97 1 0.01
98 106 0.88
99 14 0.12
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.30
Consensus pattern (98 bp):
AAAGGAAGGGTACACTTCGTGTATACCACTTGAAAAGGAAATGTACACTATGTGTGTACACTTGA
AAAGGCTAGGTACACTTTGTGTATACAATATAA
Found at i:105294742 original size:33 final size:33
Alignment explanation
Indices: 105294672--105294753 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
105294662 TGCACTTTGT
* * *
105294672 GTGTACAAATTGAAAAGGGTATGTACACTTCGT
1 GTGTACAAATTGAAAAAGGAATGTACACTTCGG
* *
105294705 GTGTACTACTTGAAAAAGGAATGTACA-TCTCGG
1 GTGTACAAATTGAAAAAGGAATGTACACT-TCGG
105294738 GTGTAC-AATTAGAAAA
1 GTGTACAAATT-GAAAA
105294754 GAAAAGGTCC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
32 4 0.10
33 37 0.90
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (33 bp):
GTGTACAAATTGAAAAAGGAATGTACACTTCGG
Found at i:105297245 original size:6 final size:6
Alignment explanation
Indices: 105297228--105297305 Score: 66
Period size: 6 Copynumber: 13.0 Consensus size: 6
105297218 CCTTTTGGAC
* * * * * * * *
105297228 CTCCTC CTCCTT CTCCTT CTACTT CTTCTT CTTCTC CTTCTT CTTCTC
1 CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT
* *
105297276 CTGCTT CTCATT CTCCTT CTCCTT CTCCTT
1 CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT
105297306 ATTATTATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.03, C:0.45, G:0.01, T:0.51
Consensus pattern (6 bp):
CTCCTT
Found at i:105297255 original size:9 final size:9
Alignment explanation
Indices: 105297237--105297301 Score: 51
Period size: 9 Copynumber: 7.2 Consensus size: 9
105297227 CCTCCTCCTC
*
105297237 CTTCTCCTT
1 CTTCTTCTT
*
105297246 CTACTTCTT
1 CTTCTTCTT
*
105297255 CTTCTTCTC
1 CTTCTTCTT
105297264 CTTCTTCTT
1 CTTCTTCTT
* *
105297273 CTCCTGCTT
1 CTTCTTCTT
*
105297282 C-TCATTCTC
1 CTTC-TTCTT
*
105297291 CTTCTCCTT
1 CTTCTTCTT
105297300 CT
1 CT
105297302 CCTTATTATT
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
8 1 0.02
9 39 0.93
10 2 0.05
ACGTcount: A:0.03, C:0.42, G:0.02, T:0.54
Consensus pattern (9 bp):
CTTCTTCTT
Found at i:105297262 original size:21 final size:21
Alignment explanation
Indices: 105297231--105297301 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
105297221 TTTGGACCTC
*
105297231 CTCCTCCTTCTCCTTCTACTT
1 CTCCTTCTTCTCCTTCTACTT
* *
105297252 CTTCTTCTTCTCCTTCTTCTT
1 CTCCTTCTTCTCCTTCTACTT
* * *
105297273 CTCCTGCTTCTCATTCTCCTT
1 CTCCTTCTTCTCCTTCTACTT
105297294 CTCCTTCT
1 CTCCTTCT
105297302 CCTTATTATT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.03, C:0.44, G:0.01, T:0.52
Consensus pattern (21 bp):
CTCCTTCTTCTCCTTCTACTT
Found at i:105297282 original size:15 final size:15
Alignment explanation
Indices: 105297228--105297304 Score: 61
Period size: 15 Copynumber: 5.3 Consensus size: 15
105297218 CCTTTTGGAC
* *
105297228 CTCCTCCTCCTTCTC
1 CTCCTCCTTCTTCTT
* *
105297243 CTTCTACTTCTTCTT
1 CTCCTCCTTCTTCTT
*
105297258 CTTCTCCTTCTTCTT
1 CTCCTCCTTCTTCTT
* *
105297273 CTCCTGCTTC-TCAT
1 CTCCTCCTTCTTCTT
*
105297287 -T-CTCCTTCTCCTT
1 CTCCTCCTTCTTCTT
105297300 CTCCT
1 CTCCT
105297305 TATTATTATT
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
12 6 0.12
13 3 0.06
14 4 0.08
15 35 0.73
ACGTcount: A:0.03, C:0.45, G:0.01, T:0.51
Consensus pattern (15 bp):
CTCCTCCTTCTTCTT
Found at i:105297302 original size:27 final size:27
Alignment explanation
Indices: 105297234--105297304 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
105297224 GGACCTCCTC
* *
105297234 CTCCTTCTCCTTCTACTTCTTCTTCTT
1 CTCCTTCTCCTTCTCCTGCTTCTTCTT
*
105297261 CTCCTTCTTCTTCTCCTGCTTC-TCATT
1 CTCCTTCTCCTTCTCCTGCTTCTTC-TT
105297288 CTCCTTCTCCTTCTCCT
1 CTCCTTCTCCTTCTCCT
105297305 TATTATTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.05
27 37 0.95
ACGTcount: A:0.03, C:0.44, G:0.01, T:0.52
Consensus pattern (27 bp):
CTCCTTCTCCTTCTCCTGCTTCTTCTT
Found at i:105297505 original size:6 final size:6
Alignment explanation
Indices: 105297383--105297504 Score: 145
Period size: 6 Copynumber: 20.3 Consensus size: 6
105297373 TTTGGACCTC
* * * * * * *
105297383 CTCCTC CTCCTT CTGCTT CTGCTT CTACTT CTCTTT CTGCTT CTTCTT
1 CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT
105297431 CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT
1 CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT
* * * *
105297479 CTCATT CTCCTC CTTCTT CTTCTT CT
1 CTCCTT CTCCTT CTCCTT CTCCTT CT
105297505 TTATTATTAT
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 102 1.00
ACGTcount: A:0.02, C:0.44, G:0.02, T:0.52
Consensus pattern (6 bp):
CTCCTT
Found at i:105297511 original size:3 final size:3
Alignment explanation
Indices: 105297505--105297541 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
105297495 TTCTTCTTCT
105297505 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
105297542 ACCTAAAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:105298471 original size:16 final size:16
Alignment explanation
Indices: 105298450--105298487 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
105298440 AAAATATGCG
*
105298450 TTATATA-TATAATCAA
1 TTATATACT-TAATAAA
105298466 TTATATACTTAATAAA
1 TTATATACTTAATAAA
105298482 TTATAT
1 TTATAT
105298488 CTAATGTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 19 0.95
17 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (16 bp):
TTATATACTTAATAAA
Found at i:105299692 original size:31 final size:30
Alignment explanation
Indices: 105299621--105299693 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 30
105299611 AATTATACAT
* *
105299621 AAACTTTAATTTGGTGCAATTATACACGTG
1 AAACTTTAATTTGGTGCAAATATACACCTG
* * * *
105299651 ATACTCTAATTGTGGTTCAAATATATACCTG
1 AAACTTTAATT-TGGTGCAAATATACACCTG
105299682 AAACTTTAATTT
1 AAACTTTAATTT
105299694 TGATTTAATC
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
30 10 0.29
31 24 0.71
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (30 bp):
AAACTTTAATTTGGTGCAAATATACACCTG
Found at i:105304268 original size:48 final size:49
Alignment explanation
Indices: 105304175--105304268 Score: 129
Period size: 48 Copynumber: 1.9 Consensus size: 49
105304165 GATACCTGGG
*
105304175 AATCTCGCACAATAAGTGCCATTATAAATATAGCTGACGCTATCTCAATA
1 AATCTCGCACAATAAGTGCCA-TATAAATATAGCTGAAGCTATCTCAATA
* *
105304225 AATCTCGCACCCA-AAGTGCCA-ATATATATAGCTGAAGCTATCTC
1 AATCTCGCA-CAATAAGTGCCATATAAATATAGCTGAAGCTATCTC
105304269 GACAATGCTC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
48 21 0.52
50 17 0.43
51 2 0.05
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (49 bp):
AATCTCGCACAATAAGTGCCATATAAATATAGCTGAAGCTATCTCAATA
Found at i:105305892 original size:28 final size:28
Alignment explanation
Indices: 105305847--105305902 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
105305837 CAAAAAGGAG
** *
105305847 GATTATTCAAAGTGATTTCAATGGACAA
1 GATTATTCAAAGCAATTTCAATAGACAA
105305875 GATTATTCAAAGCAATTTCAATAGACAA
1 GATTATTCAAAGCAATTTCAATAGACAA
105305903 TGGGGATGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.30
Consensus pattern (28 bp):
GATTATTCAAAGCAATTTCAATAGACAA
Found at i:105310529 original size:3 final size:3
Alignment explanation
Indices: 105310521--105310576 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
105310511 TACAAGAATG
105310521 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
105310569 TAT TAT TA
1 TAT TAT TA
105310577 CGTGTCACTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:105311658 original size:18 final size:18
Alignment explanation
Indices: 105311621--105311663 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
105311611 AAAAGCATCA
* *
105311621 TTCAATCCAAACAATGAT
1 TTCAAACCAAACAATAAT
*
105311639 TTCAAACCAAACATTAAT
1 TTCAAACCAAACAATAAT
*
105311657 TTTAAAC
1 TTCAAAC
105311664 TAGGATTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (18 bp):
TTCAAACCAAACAATAAT
Found at i:105312423 original size:3 final size:3
Alignment explanation
Indices: 105312415--105312466 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
105312405 GTTGTGTATA
* * *
105312415 TAT TAT TAT TACT AAT TAT TAT TAT T-T CTAG TAT TAT TAT AAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
105312461 TAT TAT
1 TAT TAT
105312467 GTTAGTGTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
2 1 0.03
3 37 0.93
4 2 0.05
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:105312436 original size:16 final size:15
Alignment explanation
Indices: 105312415--105312454 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
105312405 GTTGTGTATA
*
105312415 TATTATTATTACTAAT
1 TATTATTATTACT-AG
*
105312431 TATTATTATTTCTAG
1 TATTATTATTACTAG
105312446 TATTATTAT
1 TATTATTAT
105312455 AATTATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.60
Consensus pattern (15 bp):
TATTATTATTACTAG
Found at i:105312627 original size:23 final size:26
Alignment explanation
Indices: 105312601--105312656 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 26
105312591 TTTTTTTGTA
105312601 TATATTATTCAT-ACTA-T-CA-TTAT
1 TATATTATT-ATCACTATTACATTTAT
105312624 TATATTATTATCACTATTACATTTAT
1 TATATTATTATCACTATTACATTTAT
105312650 TATATTA
1 TATATTA
105312657 GTATTATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
22 2 0.07
23 13 0.45
24 1 0.03
25 2 0.07
26 11 0.38
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.54
Consensus pattern (26 bp):
TATATTATTATCACTATTACATTTAT
Found at i:105314091 original size:31 final size:31
Alignment explanation
Indices: 105314052--105314118 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
105314042 TGGAAGTATG
105314052 ACTA-CTTATCAAGAGTGGTATGGTTCAAAA
1 ACTACCTTATCAAGAGTGGTATGGTTCAAAA
105314082 ACTACCTTATCAAGAGTGGTATGGTTCAAAA
1 ACTACCTTATCAAGAGTGGTATGGTTCAAAA
105314113 ACTACC
1 ACTACC
105314119 CCCATCGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 4 0.11
31 32 0.89
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (31 bp):
ACTACCTTATCAAGAGTGGTATGGTTCAAAA
Found at i:105317203 original size:18 final size:19
Alignment explanation
Indices: 105317200--105317249 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
105317190 AACCCAAAAA
*
105317200 AAAAGAAAAAACCTAA-CTC
1 AAAA-AAAAAACCTAACCCC
105317219 AAAAAAAAAACCTAACCCC
1 AAAAAAAAAACCTAACCCC
105317238 AAAAAAAAAACC
1 AAAAAAAAAACC
105317250 AAGAAACTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 11 0.38
19 18 0.62
ACGTcount: A:0.68, C:0.24, G:0.02, T:0.06
Consensus pattern (19 bp):
AAAAAAAAAACCTAACCCC
Found at i:105317247 original size:25 final size:24
Alignment explanation
Indices: 105317154--105317228 Score: 114
Period size: 24 Copynumber: 3.1 Consensus size: 24
105317144 AGCCCTCCCT
105317154 AAAAAAAAACCTAACCCAAAAAAA
1 AAAAAAAAACCTAACCCAAAAAAA
* *
105317178 AGAAAAAAACATAACCCAAAAAAA
1 AAAAAAAAACCTAACCCAAAAAAA
* *
105317202 AAGAAAAAACCTAACTCAAAAAAA
1 AAAAAAAAACCTAACCCAAAAAAA
105317226 AAA
1 AAA
105317229 CCTAACCCCA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.75, C:0.17, G:0.03, T:0.05
Consensus pattern (24 bp):
AAAAAAAAACCTAACCCAAAAAAA
Found at i:105319708 original size:24 final size:24
Alignment explanation
Indices: 105319656--105319825 Score: 193
Period size: 25 Copynumber: 7.0 Consensus size: 24
105319646 GCTTTATCAT
* *
105319656 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTC
* *
105319681 ATAA-TCGGGGCAAAAGCCCTTTTT
1 ATAACT-GGGGCATAAGCCCTTTTC
105319705 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
* *
105319730 ATAATTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTC
105319755 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
* *
105319780 ATAATTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTC
105319803 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
105319826 GCACTTCCTC
Statistics
Matches: 126, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
23 19 0.15
24 33 0.26
25 74 0.59
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTC
Found at i:105319734 original size:49 final size:49
Alignment explanation
Indices: 105319655--105319824 Score: 229
Period size: 50 Copynumber: 3.5 Consensus size: 49
105319645 TGCTTTATCA
* * * *
105319655 TATAACTGGAGGCCT-AGCCTCTTT-TAATAATCGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTATCATAATTGGGGCATAAGCCCTTTT
*
105319704 TATAACTGGGGCATAAGCCCTTTATCATAATTGGGGCATAAGCCCTTCAT
1 TATAACTGGGGCATAAGCCCTTTATCATAATTGGGGCATAAGCCCTT-TT
*
105319754 CATAACTGGGGCATAAGCCCTTTATCATAATTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTATCATAATTGGGGCATAAGCCCTTTT
*
105319802 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
105319825 TGCACTTCCT
Statistics
Matches: 110, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
48 31 0.28
49 34 0.31
50 45 0.41
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (49 bp):
TATAACTGGGGCATAAGCCCTTTATCATAATTGGGGCATAAGCCCTTTT
Found at i:105319899 original size:20 final size:20
Alignment explanation
Indices: 105319871--105319941 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
105319861 GCATTTACAA
*
105319871 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
105319891 ACATATCATGTGCGTATCAT
1 ACATATCATGTGCATATCAT
*
105319911 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
105319931 ACATATCATGT
1 ACATATCATGT
105319942 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:105320006 original size:25 final size:25
Alignment explanation
Indices: 105319978--105320025 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
105319968 ATATATAAAC
* * *
105319978 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
105320003 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
105320026 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:105321254 original size:26 final size:27
Alignment explanation
Indices: 105321185--105321257 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
105321175 GGGCATATTT
* * *
105321185 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTATAGGGGCT-TTACG
105321212 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTACCCTATAGGGGCTTTACG
*
105321239 GTC-TTTTA-CCTAATAGGGG
1 GTCACTTTACCCT-ATAGGGG
105321258 TATTTTAGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 3 0.08
26 11 0.28
27 25 0.62
28 1 0.03
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (27 bp):
GTCACTTTACCCTATAGGGGCTTTACG
Found at i:105321332 original size:27 final size:27
Alignment explanation
Indices: 105321302--105321489 Score: 121
Period size: 27 Copynumber: 6.9 Consensus size: 27
105321292 GTAAATCTAC
*
105321302 AAACTAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTCAGTAATTTTAT
* * * *
105321329 AAACCAATGGTATTTCTA-CAATTTTTAG
1 AAACTAAGGGTATTTC-AGTAA-TTTTAT
* * *
105321357 AAAGTCAAGGGTATTTCTA-TAACTTTGT
1 AAACT-AAGGGTATTTC-AGTAATTTTAT
* * * *
105321385 ACA-TCAGGGGTATTTTAGTAATTTTAC
1 AAACT-AAGGGTATTTCAGTAATTTTAT
* * * *
105321412 AAATTAAGGGTATTTCGGTAATTTCAC
1 AAACTAAGGGTATTTCAGTAATTTTAT
* ** *
105321439 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACTAAGGGTATTTCAGTAATTTTAT
*
105321466 AAACTAAGGGTATTTTAGTAATTT
1 AAACTAAGGGTATTTCAGTAATTT
105321490 GTAAATCGAG
Statistics
Matches: 127, Mismatches: 29, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.77
28 14 0.11
29 14 0.11
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
AAACTAAGGGTATTTCAGTAATTTTAT
Found at i:105321462 original size:110 final size:108
Alignment explanation
Indices: 105321299--105321501 Score: 241
Period size: 110 Copynumber: 1.9 Consensus size: 108
105321289 TTGGTAAATC
*** * * *
105321299 TACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTACAATTTTTAGAAAGTCA
1 TACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTCTACAA-TTTTACAAACT-A
*
105321364 AGGGTATTTCTA-TAACTTTGTACATC-AGGGGTATTTTAGTAATTT
64 AGGGTATTT-TAGTAA-TTTGTAAATCGAGGGGTATTTTAGTAATTT
* * **
105321409 TACAAATTAAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT-TGGTAATTTTACAAACTAA
1 TACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTCT-ACAATTTTACAAACTAA
105321473 GGGTATTTTAGTAATTTGTAAATCGAGGG
65 GGGTATTTTAGTAATTTGTAAATCGAGGG
105321502 TAAAACAGTA
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
107 11 0.14
108 17 0.22
109 10 0.13
110 41 0.52
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (108 bp):
TACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTCTACAATTTTACAAACTAAG
GGTATTTTAGTAATTTGTAAATCGAGGGGTATTTTAGTAATTT
Found at i:105321703 original size:27 final size:27
Alignment explanation
Indices: 105321483--105321692 Score: 253
Period size: 27 Copynumber: 7.8 Consensus size: 27
105321473 GGGTATTTTA
*
105321483 GTAATT-TGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
105321509 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
105321536 GTAGTTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
105321563 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
105321590 GTAATTCTATAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
105321617 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* * *
105321644 GTAATTATGTAAATTGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
105321671 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
105321693 CTTTGGTAAT
Statistics
Matches: 161, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
26 7 0.04
27 154 0.96
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:105321719 original size:27 final size:27
Alignment explanation
Indices: 105321698--105321787 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
105321688 GGGTACTTTG
*
105321698 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
105321725 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * * *
105321752 GTATTTTTACAAA-CTAAGCGTTTTTCG
1 GTAATTTTACAAATCGAAG-GTATTTCA
105321779 GTAATTTTA
1 GTAATTTTA
105321788 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
26 3 0.06
27 51 0.94
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:105323864 original size:12 final size:12
Alignment explanation
Indices: 105323847--105323882 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
105323837 ATTCATTTGA
105323847 CATTCATGCATT
1 CATTCATGCATT
105323859 CATTCATGCATT
1 CATTCATGCATT
*
105323871 CATTCATACATT
1 CATTCATGCATT
105323883 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:105329385 original size:13 final size:15
Alignment explanation
Indices: 105329361--105329394 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
105329351 TTTAATTTTC
105329361 AAAATTTCAAAAA-A
1 AAAATTTCAAAAATA
105329375 AAAATTT-AAAAATA
1 AAAATTTCAAAAATA
105329389 AAAATT
1 AAAATT
105329395 GCATTTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATTTCAAAAATA
Found at i:105329424 original size:30 final size:31
Alignment explanation
Indices: 105329390--105329491 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
105329380 TTAAAAATAA
*
105329390 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
105329420 AAATTTCATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
105329450 AAATTTCACTTAGACCCCTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCCTAAACTTTTC-TCT
105329480 AAATTTCATTTT
1 AAATTTCATTTT
105329492 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.06
30 57 0.92
31 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTCT
Found at i:105329913 original size:17 final size:14
Alignment explanation
Indices: 105329880--105329916 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
105329870 GACTTTGAAA
105329880 AAGAAGAAAAGAGG
1 AAGAAGAAAAGAGG
105329894 AAGAAGAAAAGAGG
1 AAGAAGAAAAGAGG
105329908 AAGAAGAAA
1 AAGAAGAAA
105329917 GAAAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
AAGAAGAAAAGAGG
Found at i:105330053 original size:15 final size:13
Alignment explanation
Indices: 105330031--105330069 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
105330021 GCAGCCCAAG
105330031 AAAAAAACAACAAA
1 AAAAAAACAA-AAA
105330045 AACAAAAACAAAAA
1 AA-AAAAACAAAAA
105330059 AAAAGAAACAA
1 AAAA-AAACAA
105330070 GCCCAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 2 0.09
14 13 0.57
15 8 0.35
ACGTcount: A:0.85, C:0.13, G:0.03, T:0.00
Consensus pattern (13 bp):
AAAAAAACAAAAA
Found at i:105330067 original size:20 final size:20
Alignment explanation
Indices: 105330044--105330085 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
105330034 AAAACAACAA
105330044 AAACAAAAACAAAAAAAAAG
1 AAACAAAAACAAAAAAAAAG
***
105330064 AAACAAGCCCAAAAAAAAAG
1 AAACAAAAACAAAAAAAAAG
105330084 AA
1 AA
105330086 GAGCAGGCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.79, C:0.14, G:0.07, T:0.00
Consensus pattern (20 bp):
AAACAAAAACAAAAAAAAAG
Found at i:105330243 original size:22 final size:20
Alignment explanation
Indices: 105330218--105330268 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
105330208 GGCCCAGCAG
105330218 AGAAAAAAAAGAAAAGAAAAGA
1 AGAAAAAAAAG-AAAGAAAA-A
* *
105330240 AG-AAAAAGAGAAGGAAAAA
1 AGAAAAAAAAGAAAGAAAAA
105330259 AGAAAAAAAA
1 AGAAAAAAAA
105330269 AAGAGGTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 3 0.12
20 13 0.52
21 7 0.28
22 2 0.08
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (20 bp):
AGAAAAAAAAGAAAGAAAAA
Found at i:105330245 original size:19 final size:19
Alignment explanation
Indices: 105330218--105330272 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
105330208 GGCCCAGCAG
*
105330218 AGAAAAAAAAGAAAAGAAA
1 AGAAGAAAAAGAAAAGAAA
*
105330237 AGAAGAAAAAGAGAAGGAAA
1 AGAAGAAAAAGA-AAAGAAA
*
105330257 A-AAGAAAAAAAAAAGA
1 AGAAGAAAAAGAAAAGA
105330273 GGTTCAATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
18 4 0.13
19 20 0.65
20 7 0.23
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (19 bp):
AGAAGAAAAAGAAAAGAAA
Found at i:105330251 original size:11 final size:9
Alignment explanation
Indices: 105330218--105330268 Score: 57
Period size: 9 Copynumber: 5.1 Consensus size: 9
105330208 GGCCCAGCAG
105330218 AGAAAAAAA
1 AGAAAAAAA
105330227 AGAAAAGAAA
1 AGAAAA-AAA
105330237 AGAAGAAAAA
1 AGAA-AAAAA
105330247 GAGAAGGAAAAA
1 -AGAA--AAAAA
105330259 AGAAAAAAA
1 AGAAAAAAA
105330268 A
1 A
105330269 AAGAGGTTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
9 12 0.32
10 10 0.26
11 10 0.26
12 6 0.16
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:105330269 original size:11 final size:11
Alignment explanation
Indices: 105330220--105330272 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
105330210 CCCAGCAGAG
105330220 AAAAAAAAG-A
1 AAAAAAAAGAA
*
105330230 AAAGAAAAGAA
1 AAAAAAAAGAA
* *
105330241 GAAAAAGAGAA
1 AAAAAAAAGAA
**
105330252 GGAAAAAAGAA
1 AAAAAAAAGAA
105330263 AAAAAAAAGA
1 AAAAAAAAGA
105330273 GGTTCAATTC
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
10 8 0.24
11 26 0.76
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:105330438 original size:16 final size:17
Alignment explanation
Indices: 105330412--105330449 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
105330402 TTATATTTAT
105330412 ATTTTTAATTTAATTTG
1 ATTTTTAATTTAATTTG
* *
105330429 ATTTTT-ATTTTATTTT
1 ATTTTTAATTTAATTTG
105330445 ATTTT
1 ATTTT
105330450 AAATGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTTTAATTTAATTTG
Found at i:105330646 original size:18 final size:18
Alignment explanation
Indices: 105330602--105331119 Score: 220
Period size: 17 Copynumber: 29.8 Consensus size: 18
105330592 TCAATAATCC
*
105330602 TCGTGCTTTT-AAAAATTC
1 TCGTG-TTTTCAAAAATTT
* *
105330620 TCATG-TTTCAAAAATCT
1 TCGTGTTTTCAAAAATTT
*
105330637 TCGTGTTTTC-AAAATTC
1 TCGTGTTTTCAAAAATTT
*
105330654 TAGTG-TTTC-AAAATTT
1 TCGTGTTTTCAAAAATTT
*
105330670 TCTTGTTTTCAGAAAAATTTT
1 TCGTGTTTTC--AAAAA-TTT
*
105330691 TCGTGTTTT-ATAAATTT
1 TCGTGTTTTCAAAAATTT
* * **
105330708 CCGTATTTTCAAAAA-AA
1 TCGTGTTTTCAAAAATTT
* *
105330725 TCATGCCTTTCAAAAATTT
1 TCGTG-TTTTCAAAAATTT
**
105330744 TCGTGTTTTCAAAAAAATGA
1 TCGTGTTTTC--AAAAATTT
*
105330764 CCGTG-TTTCAAAAATTT
1 TCGTGTTTTCAAAAATTT
* ** *
105330781 CCGTG-TTAAAAGAAATCT
1 TCGTGTTTTCAA-AAATTT
* *
105330799 TCATATTTTCAAAAAATTT
1 TCGTGTTTTC-AAAAATTT
*
105330818 TCGTG-TTTCAAAAATCT
1 TCGTGTTTTCAAAAATTT
105330835 TCGTGTTTTCAAAAA-TT
1 TCGTGTTTTCAAAAATTT
*
105330852 TCG-GTGTTTCAAAGATTT
1 TCGTGT-TTTCAAAAATTT
* **
105330870 TTGTGTTTTCAAAAA-CA
1 TCGTGTTTTCAAAAATTT
* ***
105330887 CCGGTGATTTT-AAAAAAAA
1 TC-GTG-TTTTCAAAAATTT
*
105330906 TCGT-TTTCTAAAAAATTT
1 TCGTGTTT-TCAAAAATTT
*
105330924 CCGTG-TTTCAAAAATTT
1 TCGTGTTTTCAAAAATTT
105330941 TCGTGTTTT-AAAAATTT
1 TCGTGTTTTCAAAAATTT
*
105330958 TCGTGTTTT-AAAAATTC
1 TCGTGTTTTCAAAAATTT
*
105330975 TCGTATTTT---AAATTT
1 TCGTGTTTTCAAAAATTT
** **
105330990 T--T-TTTAAGAAAAAAAT
1 TCGTGTTT-TCAAAAATTT
* *
105331006 T-GTG-TTTCAAAAAATG
1 TCGTGTTTTCAAAAATTT
** * *
105331022 TATTCTTTT-AAAAATTC
1 TCGTGTTTTCAAAAATTT
* *
105331039 TCGTG-TTTCAAAAAATG
1 TCGTGTTTTCAAAAATTT
105331056 TCGTGTTTT-AAAAATTT
1 TCGTGTTTTCAAAAATTT
**
105331073 TCGTG-TTTCTGAAATTT
1 TCGTGTTTTCAAAAATTT
* *
105331090 CCGTG-TTT-AAAAATTC
1 TCGTGTTTTCAAAAATTT
105331106 TCGTGTTTT-AAAAA
1 TCGTGTTTTCAAAAA
105331120 AAACTTTCAT
Statistics
Matches: 376, Mismatches: 86, Indels: 77
0.70 0.16 0.14
Matches are distributed among these distances:
12 3 0.01
13 1 0.00
15 6 0.02
16 48 0.13
17 175 0.47
18 90 0.24
19 26 0.07
20 16 0.04
21 11 0.03
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (18 bp):
TCGTGTTTTCAAAAATTT
Found at i:105330661 original size:34 final size:34
Alignment explanation
Indices: 105330590--105330757 Score: 108
Period size: 36 Copynumber: 4.8 Consensus size: 34
105330580 AAAATTGTAA
* * *
105330590 TTTCAATAATCCTCGTGCTTTTAAAAATTCTCATG
1 TTTCAAAAATCTTCGTG-TTTTCAAAATTCTCATG
105330625 TTTCAAAAATCTTCGTGTTTTCAAAATTCT-AGTG
1 TTTCAAAAATCTTCGTGTTTTCAAAATTCTCA-TG
* * * *
105330659 TTTC-AAAATTTTCTTGTTTTCAGAAAAATTTTTCGTG
1 TTTCAAAAATCTTCGTGTTTTC---AAAA-TTCTCATG
* * * ***
105330696 TTTTATAAAT-TTCCGTATTTTCAAAAAAATCATG
1 TTTCAAAAATCTT-CGTGTTTTCAAAATTCTCATG
*
105330730 CCTTTCAAAAATTTTCGTGTTTTCAAAA
1 --TTTCAAAAATCTTCGTGTTTTCAAAA
105330758 AAATGACCGT
Statistics
Matches: 104, Mismatches: 18, Indels: 21
0.73 0.13 0.15
Matches are distributed among these distances:
33 16 0.15
34 22 0.21
35 19 0.18
36 24 0.23
37 12 0.12
38 11 0.11
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.45
Consensus pattern (34 bp):
TTTCAAAAATCTTCGTGTTTTCAAAATTCTCATG
Found at i:105330677 original size:16 final size:16
Alignment explanation
Indices: 105330590--105330668 Score: 68
Period size: 16 Copynumber: 4.6 Consensus size: 16
105330580 AAAATTGTAA
*
105330590 TTTCAATAATCCTCGTG
1 TTTCAA-AATTCTCGTG
* *
105330607 CTTTTAAAAATTCTCATG
1 --TTTCAAAATTCTCGTG
*
105330625 TTTCAAAAATCTTCGTG
1 TTTCAAAATTC-TCGTG
*
105330642 TTTTCAAAATTCTAGTG
1 -TTTCAAAATTCTCGTG
105330659 TTTCAAAATT
1 TTTCAAAATT
105330669 TTCTTGTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
16 19 0.38
17 8 0.16
18 18 0.36
19 5 0.10
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.44
Consensus pattern (16 bp):
TTTCAAAATTCTCGTG
Found at i:105330679 original size:17 final size:16
Alignment explanation
Indices: 105330625--105330680 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 16
105330615 AATTCTCATG
*
105330625 TTTCAAAAATCTTCGTGT
1 TTTC-AAAAT-TTCTTGT
*
105330643 TTTCAAAA-TTCTAGT
1 TTTCAAAATTTCTTGT
105330658 GTTTCAAAATTTTCTTGT
1 -TTTCAAAA-TTTCTTGT
105330676 TTTCA
1 TTTCA
105330681 GAAAAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 5 0.16
16 8 0.25
17 9 0.28
18 10 0.31
ACGTcount: A:0.27, C:0.14, G:0.09, T:0.50
Consensus pattern (16 bp):
TTTCAAAATTTCTTGT
Found at i:105330773 original size:37 final size:35
Alignment explanation
Indices: 105330623--105330971 Score: 132
Period size: 36 Copynumber: 9.8 Consensus size: 35
105330613 AAAATTCTCA
* ***
105330623 TGTTTCAAAAATCTTCGTGTTTTCAAAATTCTA-G
1 TGTTTCAAAAATTTTCGTGTTTTCAAAAAAATACG
* * *
105330657 TGTTTC-AAAATTTTCTTGTTTTCAGAAAAATTTTTCG
1 TGTTTCAAAAATTTTCGTGTTTTCA-AAAAA--ATACG
* * * * *
105330694 TGTTTTATAAATTTCCGTATTTTCAAAAAAAT-CA
1 TGTTTCAAAAATTTTCGTGTTTTCAAAAAAATACG
105330728 TGCCTTTCAAAAATTTTCGTGTTTTCAAAAAAATGACCG
1 TG--TTTCAAAAATTTTCGTGTTTTCAAAAAAAT-A-CG
* * *
105330767 TGTTTCAAAAATTTCCGTG--TT-AAAAGAAATCTTCA
1 TGTTTCAAAAATTTTCGTGTTTTCAAAA-AAA--TACG
* ** *
105330802 TATTTTCAAAAAATTTTCGTG-TTTCAAAAATCTTCG
1 T-GTTTC-AAAAATTTTCGTGTTTTCAAAAAAATACG
* ** **
105330838 TGTTTTCAAAAA-TTTCG-GTGTTTCAAAGATTTTTG
1 TG-TTTCAAAAATTTTCGTGT-TTTCAAAAAAATACG
*** *
105330873 TGTTTTCAAAAA-CACCGGTGATTTTAAAAAAAAT-CG
1 TG-TTTCAAAAATTTTC-GTG-TTTTCAAAAAAATACG
* ** *
105330909 T-TTTCTAAAAAATTTCCGTG-TTTCAAAAATTTTCG
1 TGTTTC--AAAAATTTTCGTGTTTTCAAAAAAATACG
*
105330944 TGTTTTAAAAATTTTCGTGTTTT-AAAAA
1 TGTTTCAAAAATTTTCGTGTTTTCAAAAA
105330972 TTCTCGTATT
Statistics
Matches: 241, Mismatches: 45, Indels: 58
0.70 0.13 0.17
Matches are distributed among these distances:
33 17 0.07
34 51 0.21
35 44 0.18
36 53 0.22
37 51 0.21
38 18 0.07
39 7 0.03
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (35 bp):
TGTTTCAAAAATTTTCGTGTTTTCAAAAAAATACG
Found at i:105330859 original size:35 final size:34
Alignment explanation
Indices: 105330625--105330972 Score: 161
Period size: 35 Copynumber: 9.8 Consensus size: 34
105330615 AATTCTCATG
* *
105330625 TTTCAAAAATCTTCGTGTTTTCAAAATTC-TAGTG-
1 TTTCAAAAAT-TTCGTG-TTTCAAAAATCTTCGTGT
* * *
105330659 TTTCAAAATTTTCTTGTTTTCAGAAAAATTTTTCGTGT
1 TTTCAAAAATTTCGTG-TTTC--AAAAA-TCTTCGTGT
* * ** * *
105330697 TTT-ATAAATTTCCGTATTTTCAAAAA-AATCATGCC
1 TTTCAAAAATTT-CGT-GTTTCAAAAATCTTCGTG-T
***
105330732 TTTCAAAAATTTTCGTGTTTTCAAAAAAATGACCGTG-
1 TTTCAAAAA-TTTCGTG-TTTC--AAAAATCTTCGTGT
** * *
105330769 TTTCAAAAATTTCCGTGTTAAAAGAAATCTTCATAT
1 TTTCAAAAATTT-CGTGTTTCAA-AAATCTTCGTGT
105330805 TTTCAAAAAATTTTCGTGTTTCAAAAATCTTCGTGT
1 TTTC-AAAAA-TTTCGTGTTTCAAAAATCTTCGTGT
* * *
105330841 TTTCAAAAATTTCGGTGTTTCAAAGATTTTTGTGT
1 TTTCAAAAATTTC-GTGTTTCAAAAATCTTCGTGT
*** * ***
105330876 TTTCAAAAACACCGGTGATTTTAAAAAAAATCGT-T
1 TTTCAAAAATTTC-GTG-TTTCAAAAATCTTCGTGT
* *
105330911 TTCTAAAAAATTTCCGTGTTTCAAAAATTTTCGTGT
1 TT-TCAAAAATTT-CGTGTTTCAAAAATCTTCGTGT
*
105330947 TTT-AAAAATTTTCGTGTTTTAAAAAT
1 TTTCAAAAA-TTTCGTGTTTCAAAAAT
105330973 TCTCGTATTT
Statistics
Matches: 239, Mismatches: 50, Indels: 50
0.71 0.15 0.15
Matches are distributed among these distances:
33 10 0.04
34 37 0.15
35 69 0.29
36 62 0.26
37 40 0.17
38 17 0.07
39 4 0.02
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (34 bp):
TTTCAAAAATTTCGTGTTTCAAAAATCTTCGTGT
Found at i:105331157 original size:17 final size:17
Alignment explanation
Indices: 105331137--105331174 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
105331127 CATTTTTTAA
*
105331137 AAAAATTTTCGTG-CTT
1 AAAAATTCTCGTGTCTT
*
105331153 CAAAATTCTCGTGTCTT
1 AAAAATTCTCGTGTCTT
105331170 AAAAA
1 AAAAA
105331175 AAGTTTTCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (17 bp):
AAAAATTCTCGTGTCTT
Found at i:105331176 original size:19 final size:19
Alignment explanation
Indices: 105331098--105331176 Score: 58
Period size: 19 Copynumber: 4.3 Consensus size: 19
105331088 TTCCGTGTTT
*
105331098 AAAAATTCTCGTGTTTTAAA
1 AAAAATTCTCGTGTCTT-AA
* * *
105331118 AAAAACTT-TCATTTTTTAA
1 AAAAA-TTCTCGTGTCTTAA
*
105331137 AAAAATTTTCGTG-CTT--
1 AAAAATTCTCGTGTCTTAA
*
105331153 CAAAATTCTCGTGTCTTAA
1 AAAAATTCTCGTGTCTTAA
105331172 AAAAA
1 AAAAA
105331177 GTTTTCATAT
Statistics
Matches: 46, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
16 11 0.24
17 3 0.07
18 4 0.09
19 14 0.30
20 12 0.26
21 2 0.04
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.39
Consensus pattern (19 bp):
AAAAATTCTCGTGTCTTAA
Found at i:105331721 original size:40 final size:40
Alignment explanation
Indices: 105331666--105331747 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
105331656 TTTGTTTTCA
105331666 AAAAAAAAATCATGCATTTGCATCGTGTTGTATATATTCT
1 AAAAAAAAATCATGCATTTGCATCGTGTTGTATATATTCT
105331706 AAAAAAAAATCATGCATTTGCATCGTGTTGTATATATTCT
1 AAAAAAAAATCATGCATTTGCATCGTGTTGTATATATTCT
105331746 AA
1 AA
105331748 CTTGTTTTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (40 bp):
AAAAAAAAATCATGCATTTGCATCGTGTTGTATATATTCT
Found at i:105337086 original size:84 final size:83
Alignment explanation
Indices: 105336878--105337507 Score: 342
Period size: 74 Copynumber: 7.8 Consensus size: 83
105336868 ACTATTTTGG
* * * * *
105336878 CAAAAACCAACTCATACTGCGAGAGGTGAGTTGAAGCCTCAGGACATGCTGAGGTATTTTCTATT
1 CAAAAATCAATTCATATTGCGAGAGGTGAGTTG-AGCCTCAGGACACGCTGAGGTATTTTCAATT
*
105336943 TCTGTTTTTTCATTTATGTTTT
65 CCTG---TTTCATTTATGTTTT
* *
105336965 CAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTC
1 CAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTC
105337030 CTG-TTCAATTTATGTTTT
66 CTGTTTC-ATTTATGTTTT
*** * *
105337048 TTCAAATCAACTTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAGTTTCAA--
1 CAAAAATCAA-TTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
*
105337111 ----TTTC--TTGT-TTTT
65 CCTGTTTCATTTATGTTTT
* * * *
105337123 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAACGCCGAGGTATTTTCAAAT
1 CAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC-ACGCTGAGGTATTTTC-AAT
* *
105337188 T-C---TAC-TTCA------
64 TCCTGTTTCATTTATGTTTT
* * * ** * *
105337197 -AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTAGCTCACG-TGTTGCAGTCACTTTCA
1 CAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG-AG--GT-ATTTTCA
* * * *
105337260 ATTTCTGTTTTTTATGTCTGTTTT
62 ATTCCTG--TTTCATTTATGTTTT
* * * * * * *
105337284 C-TAAATCAACTCATAATTGCAAGAAGTGAGTTGAGCATCGGGGCACCGCTGAGGTATTTTCAA-
1 CAAAAATCAATTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGACA-CGCTGAGGTATTTTCAAT
* *
105337347 TACTG------TT-TG---G
64 TCCTGTTTCATTTATGTTTT
* * * * *
105337357 CAAAAAACCAACTCATACTGCGAGAGGTGAGTTGAG-CTCAGGACATGCTGAGGTATTTTCCATT
1 C-AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
*
105337421 TCTGTTTTTCAATTTATGTTTT
65 CCTG--TTTC-ATTTATGTTTT
* * * * * *
105337443 CAAAAATCAATTCATATTGCTAGAGGTGAATGGAGTCTCAGGTCATACGCCGAGGTATTTTCAAT
1 CAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAAT
105337508 AGATGTTTTT
Statistics
Matches: 417, Mismatches: 77, Indels: 97
0.71 0.13 0.16
Matches are distributed among these distances:
71 1 0.00
72 19 0.05
73 49 0.12
74 53 0.13
75 42 0.10
76 7 0.02
77 1 0.00
78 2 0.00
79 4 0.01
80 1 0.00
81 1 0.00
82 5 0.01
83 20 0.05
84 48 0.12
85 32 0.08
86 44 0.11
87 44 0.11
88 39 0.09
89 3 0.01
90 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (83 bp):
CAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTC
CTGTTTCATTTATGTTTT
Found at i:105337153 original size:74 final size:73
Alignment explanation
Indices: 105337033--105337432 Score: 283
Period size: 73 Copynumber: 5.3 Consensus size: 73
105337023 TCAATTCCTG
* *
105337033 TTCAATTTATGTTTTTTC--AAATCAACTTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTCAATTTCTG-TTTTTCAAAAATCAAC-TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
*
105337096 CTGAGGTAGT
64 CTGAGGTATT
* *
105337106 TTCAATTTCTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAACG
1 TTCAATTTC-TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC-ACG
*
105337171 CCGAGGTATT
64 CTGAGGTATT
* ** * * **
105337181 TTCAAATTC--TACTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTAGCTCACG-
1 TTCAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* *
105337243 TGTTGCAGTCACT
65 TG-AG--GT-ATT
** * * *
105337256 TTCAATTTCTGTTTTTTATGTCTGTTTTCTAAATCAACTCATAATTGCAAGAAGTGAGTTGAGCA
1 TTCAATTTCTG---TTT-T-TC------AAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCC
* *
105337321 TCGGGGCACCGCTGAGGTATT
54 TCAGGACA-CGCTGAGGTATT
* ** * * *
105337342 TTCAA-TACTGTTTGGCAAAAAACCAACTCATACTGCGAGAGGTGAGTTGAG-CTCAGGACATGC
1 TTCAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
105337405 TGAGGTATT
65 TGAGGTATT
*
105337414 TTCCATTTCTGTTTTTCAA
1 TTCAATTTCTGTTTTTCAA
105337433 TTTATGTTTT
Statistics
Matches: 251, Mismatches: 51, Indels: 51
0.71 0.14 0.14
Matches are distributed among these distances:
71 1 0.00
72 25 0.10
73 66 0.26
74 51 0.20
75 48 0.19
80 2 0.01
81 1 0.00
82 5 0.02
85 4 0.02
86 7 0.03
87 14 0.06
88 22 0.09
89 3 0.01
90 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (73 bp):
TTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTATT
Found at i:105337382 original size:235 final size:230
Alignment explanation
Indices: 105336966--105337393 Score: 535
Period size: 235 Copynumber: 1.8 Consensus size: 230
105336956 TTATGTTTTC
* * *
105336966 AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTCC
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTACTTTCAATTCC
* * * *
105337031 TGTTCAATTTATGTTTTTTCAAATCAACTTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
66 TGTT-AATTTATGTTTTTTCAAATCAACTTCATATTGCAAGAAGTGAGTTGAGCATCAGGACACG
* ** * *
105337096 CTGAGGTAGTTTCAATTTCTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
130 CTGAGGTAGTTTCAATTACTTGTTTGGCAAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCT
105337161 CGGGGCAACGCCGAGGTATTTTCAAATTCTACTTCA
195 CGGGGCAACGCCGAGGTATTTTCAAATTCTACTTCA
* *
105337197 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-TAGCTCACGTGTTGCA-GTCACTTTCA
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAG-ACAC--GTTG-AGGT-ACTTTCA
* *
105337260 ATTTCTGTT-TTTTATGTCTGTTTTCTAAATCAAC-TCATAATTGCAAGAAGTGAGTTGAGCATC
61 ATTCCTGTTAATTTATGT-T-TTTTC-AAATCAACTTCAT-ATTGCAAGAAGTGAGTTGAGCATC
* * *
105337323 GGGGCACCGCTGAGGTATTTTCAA-TAC-TGTTTGGCAAAAAACCAACTCATACTGCGAGAGGTG
122 AGGACA-CGCTGAGGTAGTTTCAATTACTTGTTTGGC-AAAAACCAACTCATACTGCGAGAGGTG
105337386 AGTTGAGC
185 AGTTGAGC
105337394 TCAGGACATG
Statistics
Matches: 167, Mismatches: 19, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
230 2 0.01
231 38 0.23
232 7 0.04
233 7 0.04
234 29 0.17
235 68 0.41
236 16 0.10
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (230 bp):
AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTACTTTCAATTCC
TGTTAATTTATGTTTTTTCAAATCAACTTCATATTGCAAGAAGTGAGTTGAGCATCAGGACACGC
TGAGGTAGTTTCAATTACTTGTTTGGCAAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCTC
GGGGCAACGCCGAGGTATTTTCAAATTCTACTTCA
Found at i:105337649 original size:20 final size:20
Alignment explanation
Indices: 105337621--105337658 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
105337611 CAAAAAAAAA
*
105337621 TCAACTCATATTGCGAGAGG
1 TCAACTCATAGTGCGAGAGG
*
105337641 TCAATTCATAGTGCGAGA
1 TCAACTCATAGTGCGAGA
105337659 AATGAGTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (20 bp):
TCAACTCATAGTGCGAGAGG
Found at i:105338852 original size:6 final size:6
Alignment explanation
Indices: 105338841--105338865 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
105338831 ACACGCGGTG
105338841 GCCGGC GCCGGC GCCGGC GCCGGC G
1 GCCGGC GCCGGC GCCGGC GCCGGC G
105338866 AGCTCCGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.48, G:0.52, T:0.00
Consensus pattern (6 bp):
GCCGGC
Found at i:105451706 original size:26 final size:26
Alignment explanation
Indices: 105451669--105451726 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
105451659 TGATACAAAT
105451669 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
105451695 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
105451721 TGATAA
1 TGATAA
105451727 GAATTTCATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.34, C:0.03, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Done.