Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 330 of 343
Found at i:105868223 original size:89 final size:90
Alignment explanation
Indices: 105868127--105868376 Score: 387
Period size: 89 Copynumber: 2.8 Consensus size: 90
105868117 GATTTTTGAC
105868127 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
105868192 TTTTTTTGA-AGAGCAAAAATTG-GA
66 TTTTTTTGACA-AACAAAAATTGAGA
* * * *
105868216 AAGCAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
105868281 TTTTTTTGACAAACATAAATTGAAGA
66 TTTTTTTGACAAACAAAAATTG-AGA
* * *
105868307 AAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGATTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
105868372 TTTTT
66 TTTTT
105868377 GAAAAATAGA
Statistics
Matches: 145, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
89 79 0.54
90 1 0.01
91 65 0.45
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (90 bp):
AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTGACAAACAAAAATTGAGA
Found at i:105868238 original size:325 final size:325
Alignment explanation
Indices: 105867641--105868304 Score: 1249
Period size: 325 Copynumber: 2.0 Consensus size: 325
105867631 TAAATTGAAA
*
105867641 AAACATTAATTGAAAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACATAAATTGAAAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
105867706 TTTTGACGAACATAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAAC
66 TTTTGACAAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAAC
105867771 TCACCTCTCGCGATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGA
131 TCACCTCTCGCGATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGA
*
105867836 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGGAAAGCAGAAAT
196 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAAAAATTGGAAAGCAGAAAT
105867901 CGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC
261 CGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC
*
105867966 AAACATAAATTGAAATTACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACATAAATTGAAAATACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
105868030 ATTTTGACAAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAA
65 ATTTTGACAAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAA
*
105868095 CTCACCTCTCGCGATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTG
130 CTCACCTCTCGCGATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTG
105868160 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAAAAATTGGAAAGCAGAAA
195 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAAAAATTGGAAAGCAGAAA
105868225 TCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
260 TCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
105868290 C
325 C
105868291 AAACATAAATTGAA
1 AAACATAAATTGAA
105868305 GAAAACAAAA
Statistics
Matches: 331, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
325 328 0.99
326 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (325 bp):
AAACATAAATTGAAAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTGACAAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAAC
TCACCTCTCGCGATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGA
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAAAAATTGGAAAGCAGAAAT
CGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC
Found at i:105880847 original size:26 final size:26
Alignment explanation
Indices: 105880818--105880925 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
105880808 TGATACACAT
105880818 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105880844 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105880870 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105880896 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105880922 TGAT
1 TGAT
105880926 TGGAATTTTA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105890937 original size:17 final size:16
Alignment explanation
Indices: 105890911--105890949 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
105890901 TGGTAGAGAG
*
105890911 AAAAATAAAAGGAAAA
1 AAAAAAAAAAGGAAAA
*
105890927 CAAAAAAAAAAGTAAAA
1 -AAAAAAAAAAGGAAAA
105890944 AAAAAA
1 AAAAAA
105890950 GAGTTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.85, C:0.03, G:0.08, T:0.05
Consensus pattern (16 bp):
AAAAAAAAAAGGAAAA
Found at i:105903304 original size:37 final size:37
Alignment explanation
Indices: 105903254--105903329 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
105903244 GAGGTATTTA
* *
105903254 AATAAGGAATTGGATTGCATTTTACCTCCTATTCAAG
1 AATAAGAAATTGGATTGCATTTTACCCCCTATTCAAG
*
105903291 AATAAGAAATTGGATTGTATTTTACCCCCTATTCAAG
1 AATAAGAAATTGGATTGCATTTTACCCCCTATTCAAG
105903328 AA
1 AA
105903330 GTAGGAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (37 bp):
AATAAGAAATTGGATTGCATTTTACCCCCTATTCAAG
Found at i:105907343 original size:29 final size:29
Alignment explanation
Indices: 105907272--105907346 Score: 123
Period size: 29 Copynumber: 2.6 Consensus size: 29
105907262 ATGCATAATC
* *
105907272 ATTAATTTAATTCCATTTCATTTATAAGC
1 ATTAATTTAATTCTATTTCATTTATAAGA
*
105907301 ATTAATTTAATTCTATTTTATTTATAAGA
1 ATTAATTTAATTCTATTTCATTTATAAGA
105907330 ATTAATTTAATTCTATT
1 ATTAATTTAATTCTATT
105907347 ATTTCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.53
Consensus pattern (29 bp):
ATTAATTTAATTCTATTTCATTTATAAGA
Found at i:105923691 original size:16 final size:16
Alignment explanation
Indices: 105923670--105923708 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
105923660 GTTTGATTAA
*
105923670 CTGTAATAGAATAGAG
1 CTGTAATAAAATAGAG
105923686 CTGTAATAAAATAGAG
1 CTGTAATAAAATAGAG
*
105923702 TTGTAAT
1 CTGTAAT
105923709 TAGTAATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (16 bp):
CTGTAATAAAATAGAG
Found at i:105923918 original size:14 final size:14
Alignment explanation
Indices: 105923901--105923927 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
105923891 AATATAAATA
105923901 TTATTAAAAATAAT
1 TTATTAAAAATAAT
105923915 TTATTAAAAATAA
1 TTATTAAAAATAA
105923928 AAATATATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTATTAAAAATAAT
Found at i:105923976 original size:16 final size:16
Alignment explanation
Indices: 105923946--105923996 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 16
105923936 GATTTAATAA
*
105923946 TATTTTTA-ATAAAAT
1 TATTTTTATATTAAAT
105923961 TATTTTTATATTAAAT
1 TATTTTTATATTAAAT
* *
105923977 TA-TATTATATTAAAA
1 TATTTTTATATTAAAT
105923992 TATTT
1 TATTT
105923997 CAAATATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 21 0.70
16 9 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTTTTATATTAAAT
Found at i:105924650 original size:92 final size:92
Alignment explanation
Indices: 105924493--105924678 Score: 363
Period size: 92 Copynumber: 2.0 Consensus size: 92
105924483 TAGATAGTTA
105924493 TTAAGTTTGTTTAGTAAGTTGTCAGTAGAATGGTGTATATAAGTCAACTATTATAAGCTCATTGA
1 TTAAGTTTGTTTAGTAAGTTGTCAGTAGAATGGTGTATATAAGTCAACTATTATAAGCTCATTGA
105924558 ATTGAATCAAGTAAGAATTTTTTTTAC
66 ATTGAATCAAGTAAGAATTTTTTTTAC
*
105924585 TTAAGTTTGTTTAGTAAGTTGTTAGTAGAATGGTGTATATAAGTCAACTATTATAAGCTCATTGA
1 TTAAGTTTGTTTAGTAAGTTGTCAGTAGAATGGTGTATATAAGTCAACTATTATAAGCTCATTGA
105924650 ATTGAATCAAGTAAGAATTTTTTTTAC
66 ATTGAATCAAGTAAGAATTTTTTTTAC
105924677 TT
1 TT
105924679 TTGAATCAAT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 93 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (92 bp):
TTAAGTTTGTTTAGTAAGTTGTCAGTAGAATGGTGTATATAAGTCAACTATTATAAGCTCATTGA
ATTGAATCAAGTAAGAATTTTTTTTAC
Found at i:105924725 original size:20 final size:20
Alignment explanation
Indices: 105924671--105924728 Score: 55
Period size: 23 Copynumber: 2.8 Consensus size: 20
105924661 TAAGAATTTT
* *
105924671 TTTTACTTTTGAATCAATTG
1 TTTTACTTTTGAATAAATTC
105924691 TTCTTA-TTGAATTGAATAAATTC
1 TT-TTACTT---TTGAATAAATTC
105924714 TTTTACTTTTGAATA
1 TTTTACTTTTGAATA
105924729 GATTGTTCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
20 11 0.35
21 3 0.10
22 3 0.10
23 14 0.45
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (20 bp):
TTTTACTTTTGAATAAATTC
Found at i:105925569 original size:20 final size:21
Alignment explanation
Indices: 105925529--105925578 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
105925519 CTCTTGAATA
105925529 GATTGTTTTCCTATTTCAATT
1 GATTGTTTTCCTATTTCAATT
* *
105925550 GATTGTTTT-TTATTTTAATT
1 GATTGTTTTCCTATTTCAATT
105925570 GATTGTTTT
1 GATTGTTTT
105925579 AATATCTGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.18, C:0.06, G:0.12, T:0.64
Consensus pattern (21 bp):
GATTGTTTTCCTATTTCAATT
Found at i:105931271 original size:21 final size:22
Alignment explanation
Indices: 105931242--105931288 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
105931232 CAGAAGGAGT
*
105931242 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
105931264 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
105931285 GAGT
1 GAGT
105931289 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:105936122 original size:23 final size:23
Alignment explanation
Indices: 105936078--105936122 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
105936068 ACCAATTGAA
*
105936078 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
105936101 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
105936123 CACCTACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:105942545 original size:22 final size:22
Alignment explanation
Indices: 105942517--105942562 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
105942507 AATAATTTAC
105942517 CATATTTCTATAGGATACTTGT
1 CATATTTCTATAGGATACTTGT
*
105942539 CATATTTTTATAGGATACTTGT
1 CATATTTCTATAGGATACTTGT
105942561 CA
1 CA
105942563 ACCCTCTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (22 bp):
CATATTTCTATAGGATACTTGT
Found at i:105944131 original size:47 final size:47
Alignment explanation
Indices: 105944076--105944168 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
105944066 TGTCACTTAC
* *
105944076 ATGAAAAATTATAAATGATTTTATATTTCGATAATCCTATTATAAAT
1 ATGAAAAATTACAAATGATTTTATATTTCGAAAATCCTATTATAAAT
*
105944123 ATGAAAAATTACAAATGATTTTATATTTCGAAAATTCTATTATAAA
1 ATGAAAAATTACAAATGATTTTATATTTCGAAAATCCTATTATAAA
105944169 AAAGCAATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.41
Consensus pattern (47 bp):
ATGAAAAATTACAAATGATTTTATATTTCGAAAATCCTATTATAAAT
Found at i:105953287 original size:53 final size:53
Alignment explanation
Indices: 105953206--105953356 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
105953196 CTTACACGGT
* *
105953206 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
105953261 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
105953314 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
105953357 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:105959328 original size:53 final size:53
Alignment explanation
Indices: 105959194--105959337 Score: 202
Period size: 53 Copynumber: 2.7 Consensus size: 53
105959184 CGCCCGTTTT
**
105959194 AGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACTTCGTATA
1 AGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACTTCGTATA
105959247 AGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGA-TTCCGTATA
1 AGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACTT-CGTATA
* *
105959300 AGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 AGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
105959338 ACCGTGTAAG
Statistics
Matches: 83, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
52 3 0.04
53 73 0.88
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (53 bp):
AGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACTTCGTATA
Found at i:105962401 original size:16 final size:17
Alignment explanation
Indices: 105962380--105962413 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
105962370 ATGGGTTAGC
105962380 ATTAATGACTAAA-TTT
1 ATTAATGACTAAAGTTT
*
105962396 ATTAATGATTAAAGTTT
1 ATTAATGACTAAAGTTT
105962413 A
1 A
105962414 ATTATATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (17 bp):
ATTAATGACTAAAGTTT
Found at i:105963694 original size:39 final size:39
Alignment explanation
Indices: 105963640--105963800 Score: 234
Period size: 39 Copynumber: 4.1 Consensus size: 39
105963630 CATCAAGGAC
* *
105963640 TCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACTGAA
1 TCCGGACCAAGCCCTGGAACAGGAAATAAGTTTACCGAA
*
105963679 TCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACCGAA
1 TCCGGACCAAGCCCTGGAACAGGAAATAAGTTTACCGAA
* * *
105963718 TCCGGACCAAGCCTTGGGACAGGAAATAAGTTTACCGAC
1 TCCGGACCAAGCCCTGGAACAGGAAATAAGTTTACCGAA
* *
105963757 TCCGGTCCAAGCCCTGGAACAGGAAATAGGTTTACC-AA
1 TCCGGACCAAGCCCTGGAACAGGAAATAAGTTTACCGAA
105963795 CTCCGG
1 -TCCGG
105963801 CTCGAGCCCT
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 110 0.99
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.17
Consensus pattern (39 bp):
TCCGGACCAAGCCCTGGAACAGGAAATAAGTTTACCGAA
Found at i:105975996 original size:25 final size:25
Alignment explanation
Indices: 105975953--105976003 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
105975943 ACGAATTTCA
* *
105975953 AATAGAACAGAATTCAATAAAGCAG
1 AATAGAACAAAATACAATAAAGCAG
* *
105975978 AATAGAACAAAATAGAATATAGCAG
1 AATAGAACAAAATACAATAAAGCAG
105976003 A
1 A
105976004 GCAATACTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.59, C:0.10, G:0.16, T:0.16
Consensus pattern (25 bp):
AATAGAACAAAATACAATAAAGCAG
Found at i:105979149 original size:15 final size:15
Alignment explanation
Indices: 105979126--105979156 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
105979116 CAAAAATATA
*
105979126 AAATTGAATTGAATC
1 AAATGGAATTGAATC
105979141 AAATGGAATTGAATC
1 AAATGGAATTGAATC
105979156 A
1 A
105979157 TCAACCATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.29
Consensus pattern (15 bp):
AAATGGAATTGAATC
Found at i:105982085 original size:3 final size:3
Alignment explanation
Indices: 105982077--105982104 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
105982067 TTACTACGCA
105982077 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
105982105 TTAACATACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:105982374 original size:24 final size:24
Alignment explanation
Indices: 105982347--105982393 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
105982337 TTTTCTACTA
*
105982347 TTATTAATTTTAAAATTTCATATG
1 TTATTAATATTAAAATTTCATATG
* * *
105982371 TTATTTATATTAAACTTTTATAT
1 TTATTAATATTAAAATTTCATAT
105982394 ATATATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.57
Consensus pattern (24 bp):
TTATTAATATTAAAATTTCATATG
Found at i:105982396 original size:17 final size:19
Alignment explanation
Indices: 105982371--105982412 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
105982361 ATTTCATATG
*
105982371 TTATTTATAT-TA-AACTT
1 TTATATATATATATAACTT
*
105982388 TTATATATATATATATCTT
1 TTATATATATATATAACTT
105982407 TTATAT
1 TTATAT
105982413 GTTAATGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 9 0.43
18 2 0.10
19 10 0.48
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
TTATATATATATATAACTT
Found at i:105982482 original size:25 final size:25
Alignment explanation
Indices: 105982405--105982482 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 25
105982395 TATATATATC
* *
105982405 TTTTATATGTTAATGATTTTAAATT
1 TTTTATATGTTAATTATTTTAAAAT
* * * *
105982430 CTTTTAT-TGTTATTTGTTTTGAACT
1 -TTTTATATGTTAATTATTTTAAAAT
* *
105982455 TTTTATATATTACTTATTTTAAAAT
1 TTTTATATGTTAATTATTTTAAAAT
105982480 TTT
1 TTT
105982483 ATCTTAAAAT
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
24 6 0.15
25 29 0.71
26 6 0.15
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.63
Consensus pattern (25 bp):
TTTTATATGTTAATTATTTTAAAAT
Found at i:105982556 original size:19 final size:20
Alignment explanation
Indices: 105982534--105982574 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
105982524 ATTTAAACTC
*
105982534 TTTTATACATTTTATTT-TA
1 TTTTATACATATTATTTATA
*
105982553 TTTTATATATATTATTTATA
1 TTTTATACATATTATTTATA
105982573 TT
1 TT
105982575 AAACTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATACATATTATTTATA
Found at i:105982615 original size:15 final size:14
Alignment explanation
Indices: 105982604--105982655 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
105982594 CTGTTATTAT
105982604 TTATATTTTTATTG
1 TTATATTTTTATTG
* *
105982618 CTATTATTTTTATTAA
1 TTA-TATTTTTATT-G
* *
105982634 TAATATTATTATTG
1 TTATATTTTTATTG
105982648 TTATATTT
1 TTATATTT
105982656 AATATTATTA
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 8 0.29
15 19 0.68
16 1 0.04
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (14 bp):
TTATATTTTTATTG
Found at i:105987924 original size:22 final size:22
Alignment explanation
Indices: 105987884--105987925 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
105987874 TGGCCACCCA
*
105987884 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
105987906 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
105987926 CCAATCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:105988049 original size:23 final size:23
Alignment explanation
Indices: 105987991--105988071 Score: 74
Period size: 23 Copynumber: 3.4 Consensus size: 23
105987981 AGGGGGTGGG
*
105987991 TTTTTGGTTTTTTGGAGAAGGATT
1 TTTTTGTTTTTTTGGAGAAGG-TT
* * * *
105988015 GTTCT-TTGTTTTGGAGGAGGTT
1 TTTTTGTTTTTTTGGAGAAGGTT
105988037 TTTTTGTTTTTTTGGAAAGAAGGTT
1 TTTTTGTTTTTTTGG--AGAAGGTT
105988062 ATTTTTGTTT
1 -TTTTTGTTT
105988072 CTTGGAAAGG
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
22 5 0.11
23 20 0.45
24 3 0.07
25 7 0.16
26 9 0.20
ACGTcount: A:0.15, C:0.01, G:0.27, T:0.57
Consensus pattern (23 bp):
TTTTTGTTTTTTTGGAGAAGGTT
Found at i:105988066 original size:25 final size:25
Alignment explanation
Indices: 105988032--105988080 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
105988022 GTTTTGGAGG
*
105988032 AGGTT-TTTTTGTTTTTTTGGAAAGA
1 AGGTTATTTTTG-TTTCTTGGAAAGA
105988057 AGGTTATTTTTGTTTCTTGGAAAG
1 AGGTTATTTTTGTTTCTTGGAAAG
105988081 GCTAGTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.53
Consensus pattern (25 bp):
AGGTTATTTTTGTTTCTTGGAAAGA
Found at i:105988382 original size:3 final size:3
Alignment explanation
Indices: 105988368--105988450 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
105988358 GAGCTTTGTT
* *
105988368 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
105988411 TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
105988451 ATATGCCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.11
3 49 0.75
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:105988437 original size:12 final size:12
Alignment explanation
Indices: 105988371--105988450 Score: 76
Period size: 12 Copynumber: 6.8 Consensus size: 12
105988361 CTTTGTTTTA
*
105988371 TTATTTTATTAT
1 TTATATTATTAT
* *
105988383 TTTTACTATTAT
1 TTATATTATTAT
105988395 TTATATTATTA-
1 TTATATTATTAT
* *
105988406 TTAT-TTCTCAT
1 TTATATTATTAT
105988417 GTATATATTATTAT
1 -T-TATATTATTAT
105988431 TTATATTATTA-
1 TTATATTATTAT
105988442 TTATATTAT
1 TTATATTAT
105988451 ATATGCCCTC
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
10 4 0.07
11 13 0.24
12 29 0.53
13 4 0.07
14 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (12 bp):
TTATATTATTAT
Found at i:105988802 original size:2 final size:2
Alignment explanation
Indices: 105988797--105988830 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
105988787 GTGTATCTAT
* *
105988797 TA TA TA CA TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
105988831 GTATTATTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:105991287 original size:19 final size:19
Alignment explanation
Indices: 105991265--105991311 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
105991255 CTTCCTTTCT
105991265 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
*
105991284 TTTGCATTACATTGCAACA
1 TTTGCATTACATTCCAACA
105991303 TTTGCATTA
1 TTTGCATTA
105991312 AACTTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:105994128 original size:8 final size:8
Alignment explanation
Indices: 105994115--105994143 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
105994105 AGGCAAAAAA
105994115 AAAAACAC
1 AAAAACAC
105994123 AAAAACAC
1 AAAAACAC
105994131 AAAAACAC
1 AAAAACAC
105994139 AAAAA
1 AAAAA
105994144 AAAACAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAACAC
Found at i:105994144 original size:10 final size:10
Alignment explanation
Indices: 105994108--105994155 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
105994098 AAGGCAAAGG
105994108 CAAAAAAAAA
1 CAAAAAAAAA
*
105994118 -AACACAAAAA
1 CAA-AAAAAAA
* *
105994128 CACAAAAACA
1 CAAAAAAAAA
105994138 CAAAAAAAAA
1 CAAAAAAAAA
105994148 CAAAAAAA
1 CAAAAAAA
105994156 TTTTTAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
9 2 0.07
10 27 0.90
11 1 0.03
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:105995399 original size:66 final size:66
Alignment explanation
Indices: 105995299--105995425 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
105995289 CATTCATATA
*
105995299 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
105995364 C
66 C
*
105995365 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
105995426 TAAGCATAGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:105995640 original size:86 final size:85
Alignment explanation
Indices: 105995529--105996041 Score: 302
Period size: 87 Copynumber: 5.9 Consensus size: 85
105995519 TGAAGATTTA
* * *
105995529 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCG
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAA-GATCTTAAACCCCTAAGCA
*
105995594 GTAGGGTAACAGACCGAATTG
65 GTAGGGAAACAGACCGAATTG
* * * *
105995615 CAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAG
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGATCTTAAACCCCTAAGCAG
** *
105995680 TAGGGAAACAGATTGAAGATG
66 TAGGGAAACAGACCGAA-TTG
** * * * * *
105995701 -ATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAATTTAC-AAG-CCTTAAACCCTTA
1 CA-GATC-TTAACCCCCTAAGCAGTAGGGAAACAGA-TCGAA--GACGAAGATCTTAAACCCCTA
* * * * *
105995762 AGCAGTAGGGTAACTGGCTGAAGATTTA
61 AGCAGTAGGGAAACAGACCG-A-A-TTG
** * * * ** *
105995790 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCA
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGATC-TTAAACCCCTAAGCA
* *
105995855 GTAGGGTAACA-AGCCGAATTTA
65 GTAGGGAAACAGA-CCGAA-TTG
* * * * ** * *
105995877 CA-AGCCTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAAATCTTAACCCCCTAA
1 CAGA-TCTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-CGA-AGATCTTAAACCCCTAA
* * *** *
105995940 CCAGTAGGGTAACAGGTTGAATTTA
62 GCAGTAGGGAAACAGACCGAA-TTG
* * * * * ** *
105995965 CAGATCTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGTA
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGATCTTAAACCCCTAAGCA
*
105996030 GTAGGGTAACAG
65 GTAGGGAAACAG
105996042 GCTGGAAATT
Statistics
Matches: 330, Mismatches: 76, Indels: 41
0.74 0.17 0.09
Matches are distributed among these distances:
85 31 0.09
86 49 0.15
87 118 0.36
88 97 0.29
89 34 0.10
90 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (85 bp):
CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGATCTTAAACCCCTAAGCAG
TAGGGAAACAGACCGAATTG
Found at i:105995674 original size:43 final size:43
Alignment explanation
Indices: 105995489--105996041 Score: 332
Period size: 43 Copynumber: 12.7 Consensus size: 43
105995479 ATTCACAAGC
* * * *
105995489 CTTAAGCCCCTAAGCAATAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* * *
105995534 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAA-GAT
* * * * * *
105995578 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * *
105995620 CTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * * **
105995663 CTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* ** * *
105995706 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAATTTACAAG-C
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGAT-GAAGAT
* * * * *
105995750 CTTAAACCCTTAAGCAGTAGGGTAACTG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* ** * * **
105995795 CTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* ** * *
105995838 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAATTTACAAG-C
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGAT-GAAGAT
* * * *
105995882 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAAAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* * * * *
105995927 CTTAACCCCCTAACCAGTAGGGTAACAGGTTGAA-TTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGA-AGAT
* * * * * **
105995970 CTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGA-AGAT
* *
105996014 CTTAAACCCCTAAGTAGTAGGGTAACAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAG
105996042 GCTGGAAATT
Statistics
Matches: 386, Mismatches: 100, Indels: 45
0.73 0.19 0.08
Matches are distributed among these distances:
42 31 0.08
43 141 0.37
44 123 0.32
45 90 0.23
46 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
Found at i:105995813 original size:175 final size:175
Alignment explanation
Indices: 105995578--105996041 Score: 497
Period size: 175 Copynumber: 2.7 Consensus size: 175
105995568 GACGAAGGGT
* * * * * * *
105995578 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGATCTTATCTCCCTAAGCAGTAGGG
1 CTTAAACCCCTAACCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGG
** * ** ***
105995642 AAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA-TTGAAGATGATGGG
66 AAACAGATCGAAGATGAAGGCCTTAACCCCCTAAGCAGTAGGGTAACAGAGCCGAA-ATGACAAG
* * *
105995706 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAAGC
130 CCTTAAACCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAAAC
* * *
105995750 CTTAAACCCTTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAACCAGTAGGGTAACAGGCTG-A-ATTTACAGATCTTAACCCCCTAAGCAGTAG
** * * * * *
105995815 GGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAATTTACA
64 GGAAACAGATCGAAGATGA-AGGCCTTAACCCCCTAAGCAGTAGGGTAACAGAGCCGAAATGACA
* * *
105995879 AGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAAT
128 AGCCTTAAACCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAAAC
* * * *
105995927 CTTAACCCCCTAACCAGTAGGGTAACAGGTTGAATTTACAGATCTTAACCCCTTAAGCAGTTGGG
1 CTTAAACCCCTAACCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGG
* * * *
105995992 AAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGTAGTAGGGTAACAG
66 AAACAGATCGAAGATGA-AGGCCTTAACCCCCTAAGCAGTAGGGTAACAG
105996042 GCTGGAAATT
Statistics
Matches: 240, Mismatches: 44, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
172 26 0.11
173 1 0.00
174 1 0.00
175 146 0.61
176 31 0.13
177 35 0.15
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (175 bp):
CTTAAACCCCTAACCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGG
AAACAGATCGAAGATGAAGGCCTTAACCCCCTAAGCAGTAGGGTAACAGAGCCGAAATGACAAGC
CTTAAACCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAAAC
Found at i:105995821 original size:132 final size:132
Alignment explanation
Indices: 105995477--105995960 Score: 651
Period size: 132 Copynumber: 3.7 Consensus size: 132
105995467 TAGAATCAGT
* * *
105995477 GAATTCACAAGCCTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
* * * * * *
105995542 CCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGG-TCTTAAACCCCTAATCGGTAGGGTAAC-A
66 CCTAAGCAGTAGGGAAACAGATTGAAGATGATGGGCT-TTAACCCCCTAAGCAGTAGGGTAACAA
105995605 GACC
130 G-CC
* * * * * *
105995609 GAA-TTGC-AGATCTT-ATCTCCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-AGATCTTAA
1 GAATTTACAAG-CCTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATCTTAA
105995668 CCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAAC
63 CCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAAC
105995733 AAGCC
128 AAGCC
* *
105995738 GAATTTACAAGCCTTAAACCCTTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGATCTTAACCC
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
** *
105995803 CCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
66 CCTAAGCAGTAGGGAAACAGATTGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
105995868 CC
131 CC
*
105995870 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCC
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
* * *
105995935 CCTAACCAGTAGGGTAACAGGTTGAA
66 CCTAAGCAGTAGGGAAACAGATTGAA
105995961 TTTACAGATC
Statistics
Matches: 308, Mismatches: 33, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
129 71 0.23
130 39 0.13
131 36 0.12
132 162 0.53
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (132 bp):
GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
CCTAAGCAGTAGGGAAACAGATTGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
CC
Found at i:105996016 original size:132 final size:132
Alignment explanation
Indices: 105995483--105996057 Score: 521
Period size: 132 Copynumber: 4.4 Consensus size: 132
105995473 CAGTGAATTC
* * * *
105995483 ACAAGCCTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAG
1 ACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAAC
** * * * * * *
105995548 CAGTAGGGAAACAGATCGAAGACGAAG-GGTCTTAAACCCCTAATCGGTAGGGTAAC-AGACCGA
66 CAGTAGGGAAACAGATAAAAAATGAAGAGCT-TTAACCCCCTAAGCAGTAGGGTAACAAG-CCGA
*
105995611 ATTG
129 AATG
* * * * * *
105995615 -C-AGATCTT-ATCTCCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-AGATCTTAACCCCCT
1 ACAAG-CCTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAAATCTTAACCCCCT
* ** * * *
105995674 AAGCAGTAGGGAAACAGATTGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCG
63 AACCAGTAGGGAAACAGATAAAAAATGAAGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCG
* *
105995739 AATTT
128 AAATG
* * * *
105995744 ACAAGCCTTAAACCCTTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGATCTTAACCCCCTAAG
1 ACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAAC
* * *
105995809 CAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAAT
66 CAGTAGGGAAACAGATAAAAAATGAAGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAAA
*
105995874 TT
131 TG
105995876 ACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAAC
1 ACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAAC
* * ** * * * * * *
105995941 CAGTAGGGTAACAGGT-TGAATTTACAGATC-TTAACCCCTTAAGCAGTTGGG-AA-ATAGATCG
66 CAGTAGGGAAACAGATAAAAAATGA-AGAGCTTTAACCCCCTAAGCAGTAGGGTAACA-AG-CCG
105996002 AAGATG
128 AA-ATG
*** *
105996008 ATGGGCCTTAAACCCCTAAGTAGTAGGGTAACAGGCTGGAA-A-TTACAAAT
1 ACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAAAT
105996058 TTCTTTTTCC
Statistics
Matches: 381, Mismatches: 46, Indels: 33
0.83 0.10 0.07
Matches are distributed among these distances:
129 72 0.19
130 42 0.11
131 70 0.18
132 194 0.51
133 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (132 bp):
ACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAAC
CAGTAGGGAAACAGATAAAAAATGAAGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAAA
TG
Found at i:105996180 original size:68 final size:68
Alignment explanation
Indices: 105996071--105996257 Score: 286
Period size: 68 Copynumber: 2.8 Consensus size: 68
105996061 TTTTTCCCTA
* * *
105996071 AAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG-AGGATCTTTTCTT
1 AAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCA-AACCTCTTCTT
*
105996135 CCTG
65 CCAG
* *
105996139 AAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGCAAACCTCTTCTTC
1 AAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAACCTCTTCTTC
105996204 CAG
66 CAG
* *
105996207 AAATGGCATTGGAGAGGCTAAAAGCCATAGCAGATCTCCTTGAAGTTTCAG
1 AAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
105996258 TGGAAGAAGA
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
68 107 0.99
69 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (68 bp):
AAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAACCTCTTCTTC
CAG
Found at i:105996373 original size:44 final size:44
Alignment explanation
Indices: 105996324--105997052 Score: 645
Period size: 44 Copynumber: 16.6 Consensus size: 44
105996314 GATTTCAGCA
*
105996324 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * *
105996368 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * * * *
105996412 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-ATT
*
105996456 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* *
105996500 TGGCATCCCCGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * *
105996544 TGGCATCCCTGTGCTTATAGGGAAC-GGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAATATCAGATT
** * * * ** * * *
105996588 TGATATTCCTGTGCTTACAGTGAAGTAGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAA-ATATCAG-ATT
*
105996632 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * *
105996676 TGGCATCCCTGTGCTTATAGGGAATAAGTTGAAAACAACAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * *
105996720 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * * * * *
105996764 TGACATTCATGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-ATT
*
105996808 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
*
105996852 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * * *
105996896 TAGCATCCCTGTGCTTATAGGGAAC-GGATAGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAATATCAGATT
* * * * ** * * *
105996940 TGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAATATCAG-ATT
* * *
105996984 TGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
*
105997028 TGACATCCCTGTGCTTATAGGGAAC
1 TGGCATCCCTGTGCTTATAGGGAAC
105997053 GGATCGAAGA
Statistics
Matches: 550, Mismatches: 112, Indels: 46
0.78 0.16 0.06
Matches are distributed among these distances:
42 4 0.01
43 27 0.05
44 485 0.88
45 30 0.05
46 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
Found at i:105996530 original size:176 final size:176
Alignment explanation
Indices: 105996324--105997052 Score: 1287
Period size: 176 Copynumber: 4.1 Consensus size: 176
105996314 GATTTCAGCA
* *
105996324 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
105996389 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
105996454 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
131 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
*
105996500 TGGCATCCCCGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
** * *
105996565 GAACGGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGTGAAGTAGATCAAAGATTTCAG
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
105996630 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
131 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
* *
105996676 TGGCATCCCTGTGCTTATAGGGAATAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
*
105996741 GAACAAATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
105996806 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
131 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
*
105996852 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTAGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
** * * *
105996917 GAACGGATAGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAG
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
* *
105996982 CATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
131 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
*
105997028 TGACATCCCTGTGCTTATAGGGAAC
1 TGGCATCCCTGTGCTTATAGGGAAC
105997053 GGATCGAAGA
Statistics
Matches: 526, Mismatches: 27, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
176 526 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (176 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
Found at i:105997401 original size:4 final size:4
Alignment explanation
Indices: 105997392--105997418 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
105997382 CAAACACAAA
105997392 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
105997419 AACCTTGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:105997499 original size:22 final size:22
Alignment explanation
Indices: 105997459--105997500 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
105997449 TGGCCACCCA
*
105997459 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
105997481 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
105997501 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:105997626 original size:22 final size:22
Alignment explanation
Indices: 105997598--105997674 Score: 86
Period size: 22 Copynumber: 3.4 Consensus size: 22
105997588 TTGTTCTTTA
105997598 TTTTGGAAGAGGTTTTTTTGTT
1 TTTTGGAAGAGGTTTTTTTGTT
105997620 TTTTGG-AG-GTGTTTTTTTGTTT
1 TTTTGGAAGAG-GTTTTTTTG-TT
105997642 TTTTGGAAAGAAGGTTATTTTTGTT
1 TTTTGG-AAG-AGGTT-TTTTTGTT
*
105997667 TCTTGGAA
1 TTTTGGAA
105997675 AGGCTAGTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
20 1 0.02
21 11 0.23
22 14 0.30
24 4 0.09
25 10 0.21
26 7 0.15
ACGTcount: A:0.16, C:0.01, G:0.26, T:0.57
Consensus pattern (22 bp):
TTTTGGAAGAGGTTTTTTTGTT
Found at i:105998055 original size:27 final size:26
Alignment explanation
Indices: 105997975--105998058 Score: 66
Period size: 27 Copynumber: 3.0 Consensus size: 26
105997965 GAGCTTTGTT
*
105997975 TTATTATTT-TATTATTT-TTA-CTA
1 TTATTATTTATATTATTTATTATATA
105997998 TTATTTATGTTATTATTATTTCTCATGTATATA
1 TTA-TTAT-TTA-TATTA-TT-T-AT-TATATA
105998031 TTATTATTTATATTATTATATTATATA
1 TTATTATTTATATTATT-TATTATATA
105998058 T
1 T
105998059 GCCCTCTCCA
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
23 3 0.06
24 4 0.08
25 2 0.04
27 12 0.24
28 4 0.08
29 4 0.08
30 5 0.10
31 4 0.08
32 6 0.12
33 5 0.10
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (26 bp):
TTATTATTTATATTATTTATTATATA
Found at i:105998399 original size:2 final size:2
Alignment explanation
Indices: 105998394--105998427 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
105998384 GTATTTCTAT
* *
105998394 TA TA TA CA TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
105998428 GTATTATTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:106003077 original size:14 final size:14
Alignment explanation
Indices: 106003058--106003084 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
106003048 ATGTCAGACC
106003058 TATAAATTTAACAA
1 TATAAATTTAACAA
106003072 TATAAATTTAACA
1 TATAAATTTAACA
106003085 GTGTTAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (14 bp):
TATAAATTTAACAA
Found at i:106012813 original size:14 final size:14
Alignment explanation
Indices: 106012755--106012805 Score: 56
Period size: 12 Copynumber: 3.9 Consensus size: 14
106012745 TTTAACATAC
106012755 TATTATTACTATT-
1 TATTATTACTATTG
* *
106012768 T-TTGTTATTATTG
1 TATTATTACTATTG
106012781 --TTATTACTATTG
1 TATTATTACTATTG
106012793 TATTATTACTATT
1 TATTATTACTATT
106012806 ATTATATTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 19 0.61
13 1 0.03
14 11 0.35
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.63
Consensus pattern (14 bp):
TATTATTACTATTG
Found at i:106012897 original size:17 final size:17
Alignment explanation
Indices: 106012865--106012899 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
106012855 TCTTACATAC
* *
106012865 TTATATTTTTGTTATTA
1 TTATATTTTAGGTATTA
106012882 TTATATTTTAGGTATTA
1 TTATATTTTAGGTATTA
106012899 T
1 T
106012900 ATCTCTATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (17 bp):
TTATATTTTAGGTATTA
Found at i:106013030 original size:3 final size:3
Alignment explanation
Indices: 106012914--106013013 Score: 60
Period size: 3 Copynumber: 33.0 Consensus size: 3
106012904 CTATCTATAT
* * * *
106012914 TTA TATA TTA ATA TCA TTA -TA TTA CTA TTT TTA TT- TTCA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA
* * * * * * *
106012959 TTA TTA TTA CTTT TTA CTA TTA CTA TTA CTA TTA CTA CTA TTA GTA
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
106013005 TTA TTA TTA
1 TTA TTA TTA
106013014 CTGTTTTCAT
Statistics
Matches: 72, Mismatches: 20, Indels: 10
0.71 0.20 0.10
Matches are distributed among these distances:
2 4 0.06
3 61 0.85
4 7 0.10
ACGTcount: A:0.32, C:0.09, G:0.01, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:106013089 original size:12 final size:12
Alignment explanation
Indices: 106013061--106013109 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
106013051 TTTTATACTT
*
106013061 TTATTTATTTAC
1 TTATTTATTTGC
*
106013073 CTATTTATTTGC
1 TTATTTATTTGC
*
106013085 TTATTTCACTTTTC
1 TTATTT-A-TTTGC
106013099 TTATTTATTTG
1 TTATTTATTTG
106013110 TTTAAGTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
12 18 0.60
13 2 0.07
14 10 0.33
ACGTcount: A:0.18, C:0.12, G:0.04, T:0.65
Consensus pattern (12 bp):
TTATTTATTTGC
Found at i:106016660 original size:3 final size:3
Alignment explanation
Indices: 106016652--106016713 Score: 63
Period size: 3 Copynumber: 20.7 Consensus size: 3
106016642 ATTTGGACTT
* * **
106016652 TTA TTA TTA TTA TTA TTA TTA TT- TCTA TTA CTA TTA CTA TTA CAA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
*
106016697 TTA CTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
106016714 TGTCAATCAC
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
2 1 0.02
3 45 0.96
4 1 0.02
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:106021492 original size:41 final size:41
Alignment explanation
Indices: 106021435--106021519 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
106021425 GATATAAAGG
106021435 ATTGGAGAATGGAAATTTGAGATATTAGGCAAATTACAAAA
1 ATTGGAGAATGGAAATTTGAGATATTAGGCAAATTACAAAA
106021476 ATTGGAGAATGGAAATTTGAGATATTAGGCAAATTACAAAA
1 ATTGGAGAATGGAAATTTGAGATATTAGGCAAATTACAAAA
106021517 ATT
1 ATT
106021520 AAGGATTTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.46, C:0.05, G:0.21, T:0.28
Consensus pattern (41 bp):
ATTGGAGAATGGAAATTTGAGATATTAGGCAAATTACAAAA
Found at i:106024710 original size:78 final size:79
Alignment explanation
Indices: 106024601--106024751 Score: 277
Period size: 79 Copynumber: 1.9 Consensus size: 79
106024591 CTCAATTTCT
106024601 CTTTTCAAATTCCACCTAAAGAGGTAG-TTTTTTTTTCTCAAAATTCACTATAATTTTATTTCAT
1 CTTTTCAAATTCCACCTAAAGAGGTAGTTTTTTTTTTCTCAAAATTCACTATAATTTTATTTCAT
*
106024665 TTAATACATATCGC
66 TCAATACATATCGC
*
106024679 CTTTTCAAATTCCACCTAAAGAGGTAGTTTTTTTTTTCTCAAAATTTACTATAATTTTATTTCAT
1 CTTTTCAAATTCCACCTAAAGAGGTAGTTTTTTTTTTCTCAAAATTCACTATAATTTTATTTCAT
106024744 TCAATACA
66 TCAATACA
106024752 CATGGTCTCA
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
78 27 0.39
79 43 0.61
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (79 bp):
CTTTTCAAATTCCACCTAAAGAGGTAGTTTTTTTTTTCTCAAAATTCACTATAATTTTATTTCAT
TCAATACATATCGC
Found at i:106033878 original size:26 final size:25
Alignment explanation
Indices: 106033849--106033903 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
106033839 AATTAAAGTA
*
106033849 AAAAAAATTAAATCGTAAAAATGGTT
1 AAAAAAATTAAATAGTAAAAATGG-T
*
106033875 AAAAAAATTGAATAGTAAAAATGGT
1 AAAAAAATTAAATAGTAAAAATGGT
106033900 AAAA
1 AAAA
106033904 GTTAAGCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 5 0.19
26 22 0.81
ACGTcount: A:0.62, C:0.02, G:0.13, T:0.24
Consensus pattern (25 bp):
AAAAAAATTAAATAGTAAAAATGGT
Found at i:106034241 original size:16 final size:17
Alignment explanation
Indices: 106034220--106034252 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
106034210 ATAACTCGTG
106034220 TATTAAA-TTACAAAAT
1 TATTAAAGTTACAAAAT
106034236 TATTAAAGTTTACAAAA
1 TATTAAAG-TTACAAAA
106034253 GTTACCATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (17 bp):
TATTAAAGTTACAAAAT
Found at i:106035170 original size:71 final size:71
Alignment explanation
Indices: 106035087--106035418 Score: 342
Period size: 71 Copynumber: 4.7 Consensus size: 71
106035077 TGATCAGGGA
* * * **
106035087 TTAATCTGATGGTTGAGATCTAGCATATGTTGTGGATTCTCGACAGCTTGAGTGAATAACATCAA
1 TTAAT-TGATGGTTGAGATCCAACATATGTTGTGGATTCTCGACAACTTGAGTGAGCAACATCAA
106035152 ATCTTTC
65 ATCTTTC
* * *
106035159 TTAATTGATGGTTGAGATCCAACACATGTTGTGGATTCTTGACAACTTGGGTGAGCAACATCAAA
1 TTAATTGATGGTTGAGATCCAACATATGTTGTGGATTCTCGACAACTTGAGTGAGCAACATCAAA
106035224 TCTTTC
66 TCTTTC
* ** * * * ** * * * * * *
106035230 TTTATCAATGGCTAAAATCCAGTATATGTTGCGGGTTC-CTGACAGCTTAAGTGAGTAACACCAA
1 TTAATTGATGGTTGAGATCCAACATATGTTGTGGATTCTC-GACAACTTGAGTGAGCAACATCAA
106035294 ATCTTTC
65 ATCTTTC
* * * *
106035301 TTAATTGATGGTTGAGATCAAACACATGTTGTGAATTCTCGACAACTAGAGTGAGCAACATCAAA
1 TTAATTGATGGTTGAGATCCAACATATGTTGTGGATTCTCGACAACTTGAGTGAGCAACATCAAA
106035366 TCTTTC
66 TCTTTC
* ** *** *
106035372 TTTATCAATGGCCAAGATCCAATATATGTTGTGGATTCTCGACAACT
1 TTAATTGATGGTTGAGATCCAACATATGTTGTGGATTCTCGACAACT
106035419 CAAGGGAGTA
Statistics
Matches: 205, Mismatches: 53, Indels: 5
0.78 0.20 0.02
Matches are distributed among these distances:
71 199 0.97
72 6 0.03
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Consensus pattern (71 bp):
TTAATTGATGGTTGAGATCCAACATATGTTGTGGATTCTCGACAACTTGAGTGAGCAACATCAAA
TCTTTC
Found at i:106035428 original size:142 final size:142
Alignment explanation
Indices: 106035111--106035415 Score: 477
Period size: 142 Copynumber: 2.1 Consensus size: 142
106035101 GAGATCTAGC
* * *
106035111 ATATGTTGTGGATTCTCGACAGCTTGAGTGAATAACATCAAATCTTTCTTAATTGATGGTTGAGA
1 ATATGTTGTGGATTCTCGACAGCTTAAGTGAGTAACACCAAATCTTTCTTAATTGATGGTTGAGA
* * * * *
106035176 TCCAACACATGTTGTGGATTCTTGACAACTTGGGTGAGCAACATCAAATCTTTCTTTATCAATGG
66 TCAAACACATGTTGTGAATTCTCGACAACTAGAGTGAGCAACATCAAATCTTTCTTTATCAATGG
* *
106035241 CTAAAATCCAGT
131 CCAAAATCCAAT
* *
106035253 ATATGTTGCGGGTTC-CTGACAGCTTAAGTGAGTAACACCAAATCTTTCTTAATTGATGGTTGAG
1 ATATGTTGTGGATTCTC-GACAGCTTAAGTGAGTAACACCAAATCTTTCTTAATTGATGGTTGAG
106035317 ATCAAACACATGTTGTGAATTCTCGACAACTAGAGTGAGCAACATCAAATCTTTCTTTATCAATG
65 ATCAAACACATGTTGTGAATTCTCGACAACTAGAGTGAGCAACATCAAATCTTTCTTTATCAATG
*
106035382 GCCAAGATCCAAT
130 GCCAAAATCCAAT
106035395 ATATGTTGTGGATTCTCGACA
1 ATATGTTGTGGATTCTCGACA
106035416 ACTCAAGGGA
Statistics
Matches: 146, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
141 1 0.01
142 144 0.99
143 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (142 bp):
ATATGTTGTGGATTCTCGACAGCTTAAGTGAGTAACACCAAATCTTTCTTAATTGATGGTTGAGA
TCAAACACATGTTGTGAATTCTCGACAACTAGAGTGAGCAACATCAAATCTTTCTTTATCAATGG
CCAAAATCCAAT
Found at i:106035625 original size:30 final size:30
Alignment explanation
Indices: 106035589--106035649 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
106035579 AGTGTATATA
106035589 TTGAACAATGTTAAATAGTATGAAGTAAAG
1 TTGAACAATGTTAAATAGTATGAAGTAAAG
106035619 TTGAACAATGTTAAATAGTATGAAGTAAAG
1 TTGAACAATGTTAAATAGTATGAAGTAAAG
106035649 T
1 T
106035650 AGTTTGGTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.46, C:0.03, G:0.20, T:0.31
Consensus pattern (30 bp):
TTGAACAATGTTAAATAGTATGAAGTAAAG
Found at i:106037910 original size:15 final size:17
Alignment explanation
Indices: 106037890--106037921 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
106037880 ATCCAAAAAC
106037890 ATAATT-TTTAT-TAAA
1 ATAATTATTTATCTAAA
106037905 ATAATTATTTATCTAAA
1 ATAATTATTTATCTAAA
106037922 CAAAGTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
ATAATTATTTATCTAAA
Found at i:106039701 original size:13 final size:13
Alignment explanation
Indices: 106039683--106039720 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
106039673 TCTAAATTAC
106039683 ATAATATATAAAA
1 ATAATATATAAAA
106039696 ATAATATTATAAAA
1 ATAATA-TATAAAA
*
106039710 A-AATAGATAAA
1 ATAATATATAAA
106039721 GAGTAAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 5 0.22
13 10 0.43
14 8 0.35
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (13 bp):
ATAATATATAAAA
Found at i:106050533 original size:59 final size:59
Alignment explanation
Indices: 106050485--106050827 Score: 533
Period size: 59 Copynumber: 5.8 Consensus size: 59
106050475 TAAATGAATG
* * * *
106050485 ATTAATCGAAAATTTATTAATTATTCATAGAATTATTATGAAATATAATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
106050544 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
* *
106050603 ATTAATCAAAAATTGATTAATTATTCATAGAATTATTATGAAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
** * *
106050662 ATTAATTGAAATTTAATTAATTATTCATATAATTATTATGAAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
*
106050721 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATATA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
** * * * *
106050780 ATTAATCGGAAATTAATTAAATATTCGTTAAATTATTATGAAACATGA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGA
106050828 ACCAGCTTTT
Statistics
Matches: 262, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 262 1.00
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (59 bp):
ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
Found at i:106050565 original size:19 final size:20
Alignment explanation
Indices: 106050541--106050755 Score: 62
Period size: 19 Copynumber: 10.9 Consensus size: 20
106050531 AATTATTTAT
106050541 TTAATTAATCA-AAAATTAA
1 TTAATTAATCATAAAATTAA
*
106050560 TTAATTATTCATAAAATT-A
1 TTAATTAATCATAAAATTAA
* * * *
106050579 TT-ATGAAAT-ATGATTATTTAT
1 TTAAT-TAATCAT-A-AAATTAA
*
106050600 TTAATTAATCA-AAAATTGA
1 TTAATTAATCATAAAATTAA
* *
106050619 TTAATTATTCATAGAATT-A
1 TTAATTAATCATAAAATTAA
* * * *
106050638 TT-ATGAAAT-ATGATTATTTAT
1 TTAAT-TAATCAT-A-AAATTAA
*
106050659 TTAATTAAT--TGAAATTTAA
1 TTAATTAATCAT-AAAATTAA
* *
106050678 TTAATTATTCATATAATT-A
1 TTAATTAATCATAAAATTAA
* * * *
106050697 TT-ATGAAAT-ATGATTATTTAT
1 TTAAT-TAATCAT-A-AAATTAA
106050718 TTAATTAATCA-AAAATTAA
1 TTAATTAATCATAAAATTAA
*
106050737 TTAATTATTCATAAAATTA
1 TTAATTAATCATAAAATTA
106050756 TTATGAAATA
Statistics
Matches: 141, Mismatches: 33, Indels: 43
0.65 0.15 0.20
Matches are distributed among these distances:
18 12 0.09
19 68 0.48
20 37 0.26
21 16 0.11
22 8 0.06
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (20 bp):
TTAATTAATCATAAAATTAA
Found at i:106050707 original size:16 final size:16
Alignment explanation
Indices: 106050633--106050714 Score: 50
Period size: 16 Copynumber: 5.4 Consensus size: 16
106050623 TTATTCATAG
106050633 AATTATTATGAAATAT
1 AATTATTATGAAATAT
* *
106050649 GATTATT-T---ATTT
1 AATTATTATGAAATAT
* *
106050661 AATTAAT-TGAAATTT
1 AATTATTATGAAATAT
**
106050676 AATTAATTAT-TCATAT
1 AATT-ATTATGAAATAT
106050692 AATTATTATGAAATAT
1 AATTATTATGAAATAT
*
106050708 GATTATT
1 AATTATT
106050715 TATTTAATTA
Statistics
Matches: 49, Mismatches: 11, Indels: 12
0.68 0.15 0.17
Matches are distributed among these distances:
12 9 0.18
15 14 0.29
16 25 0.51
17 1 0.02
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.50
Consensus pattern (16 bp):
AATTATTATGAAATAT
Found at i:106051233 original size:41 final size:41
Alignment explanation
Indices: 106051169--106051318 Score: 194
Period size: 41 Copynumber: 3.7 Consensus size: 41
106051159 GGTGTTTTAC
* * *
106051169 TAAAAGCGCCACTAAAAA-CAGAGCATTAGCGGCACTTTTGG
1 TAAAA-CGCCGCTAAAAACCAGAGCATTGGCGGCGCTTTTGG
* ***
106051210 TAAAACGCCGCTAAAAACAAGAGCATTGGCAATGCTTTTGG
1 TAAAACGCCGCTAAAAACCAGAGCATTGGCGGCGCTTTTGG
* * *
106051251 TAAAACGCCGCAAAAAACCAGAGCATTGGAGGCGCTTTTGA
1 TAAAACGCCGCTAAAAACCAGAGCATTGGCGGCGCTTTTGG
106051292 TAAAACGCCGCTAAAAACCAGAGCATT
1 TAAAACGCCGCTAAAAACCAGAGCATT
106051319 TAAAGCGCCG
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
40 11 0.12
41 82 0.88
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAACCAGAGCATTGGCGGCGCTTTTGG
Found at i:106051353 original size:27 final size:27
Alignment explanation
Indices: 106051292--106051345 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
106051282 GCGCTTTTGA
*
106051292 TAAAACGCCGCTAAAAACCAGAGCATT
1 TAAAGCGCCGCTAAAAACCAGAGCATT
106051319 TAAAGCGCCGCTAAAAACCAGAGCATT
1 TAAAGCGCCGCTAAAAACCAGAGCATT
106051346 AGCGGCGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.26, G:0.17, T:0.15
Consensus pattern (27 bp):
TAAAGCGCCGCTAAAAACCAGAGCATT
Found at i:106051553 original size:14 final size:14
Alignment explanation
Indices: 106051531--106051635 Score: 57
Period size: 14 Copynumber: 7.2 Consensus size: 14
106051521 TTAATTATCA
*
106051531 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
106051545 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* * *
106051559 ATATGATTTAGGGT
1 TTATGGTTTAAGGT
* *
106051573 CTAAGGTTTAAGAGTT
1 TTATGGTTTAAG-G-T
* *
106051589 AATTGTGGTTTAAGAT
1 --TTATGGTTTAAGGT
* * *
106051605 ATATGATTTAGGGT
1 TTATGGTTTAAGGT
*
106051619 TTAAGGTTTAAGGT
1 TTATGGTTTAAGGT
106051633 TTA
1 TTA
106051636 GGAGTTAACT
Statistics
Matches: 64, Mismatches: 23, Indels: 8
0.67 0.24 0.08
Matches are distributed among these distances:
14 52 0.81
15 1 0.02
16 2 0.03
18 9 0.14
ACGTcount: A:0.30, C:0.01, G:0.25, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:106051577 original size:21 final size:21
Alignment explanation
Indices: 106051544--106051623 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 21
106051534 TAGTTTAAGG
*
106051544 TTTATGGTTTAAGATATATGA
1 TTTAGGGTTTAAGATATATGA
* * * *
106051565 TTTAGGGTCTAAGGTTTAAGA
1 TTTAGGGTTTAAGATATATGA
*
106051586 GTTAATTGTGGTTTAAGATATATGA
1 -TT--TAG-GGTTTAAGATATATGA
106051611 TTTAGGGTTTAAG
1 TTTAGGGTTTAAG
106051624 GTTTAAGGTT
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
21 24 0.55
22 4 0.09
24 4 0.09
25 12 0.27
ACGTcount: A:0.30, C:0.01, G:0.25, T:0.44
Consensus pattern (21 bp):
TTTAGGGTTTAAGATATATGA
Found at i:106051739 original size:7 final size:7
Alignment explanation
Indices: 106051728--106051801 Score: 67
Period size: 7 Copynumber: 10.3 Consensus size: 7
106051718 TTAAGGTGTA
106051728 AGGGTTT
1 AGGGTTT
* *
106051735 GGGGTTA
1 AGGGTTT
106051742 AGGGTTT
1 AGGGTTT
106051749 AGGGTTT
1 AGGGTTT
106051756 AGGGTTT
1 AGGGTTT
*
106051763 AGTGTTT
1 AGGGTTT
* *
106051770 ATGGGATA
1 A-GGGTTT
*
106051778 AGGGTTA
1 AGGGTTT
*
106051785 AGAGATTT
1 AG-GGTTT
106051793 AGGGTTT
1 AGGGTTT
106051800 AG
1 AG
106051802 ATTAATTAGT
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
7 44 0.83
8 9 0.17
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.38
Consensus pattern (7 bp):
AGGGTTT
Found at i:106051743 original size:21 final size:21
Alignment explanation
Indices: 106051718--106051761 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
106051708 GTGTTGGAGT
*
106051718 TTAA-GGTGTAAGGGTTTGGGG
1 TTAAGGGT-TAAGGGTTTAGGG
*
106051739 TTAAGGGTTTAGGGTTTAGGG
1 TTAAGGGTTAAGGGTTTAGGG
106051760 TT
1 TT
106051762 TAGTGTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.39
Consensus pattern (21 bp):
TTAAGGGTTAAGGGTTTAGGG
Found at i:106051762 original size:14 final size:14
Alignment explanation
Indices: 106051690--106051801 Score: 68
Period size: 14 Copynumber: 7.9 Consensus size: 14
106051680 GGGATTATAA
106051690 TTTAGGGTTTAAGGG
1 TTTAGGGTTT-AGGG
*
106051705 -TTAGTG-TT-GGAG
1 TTTAGGGTTTAGG-G
* *
106051717 TTTAAGGTGTAAGGG
1 TTTAGGGT-TTAGGG
* *
106051732 TTTGGGGTTAAGGG
1 TTTAGGGTTTAGGG
106051746 TTTAGGGTTTAGGG
1 TTTAGGGTTTAGGG
*
106051760 TTTAGTGTTTATGGG
1 TTTAGGGTTTA-GGG
* * * *
106051775 ATAAGGGTTAAGAGA
1 TTTAGGGTTTAG-GG
106051790 TTTAGGGTTTAG
1 TTTAGGGTTTAG
106051802 ATTAATTAGT
Statistics
Matches: 73, Mismatches: 17, Indels: 14
0.70 0.16 0.13
Matches are distributed among these distances:
11 2 0.03
12 1 0.01
13 6 0.08
14 34 0.47
15 28 0.38
16 2 0.03
ACGTcount: A:0.21, C:0.00, G:0.39, T:0.39
Consensus pattern (14 bp):
TTTAGGGTTTAGGG
Found at i:106051769 original size:21 final size:21
Alignment explanation
Indices: 106051728--106051801 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
106051718 TTAAGGTGTA
* *
106051728 AGGGTTTGGGGTTAAGGGTTT
1 AGGGTTTAGGGTTAAGAGTTT
* *
106051749 AGGGTTTAGGGTTTAGTGTTT
1 AGGGTTTAGGGTTAAGAGTTT
* *
106051770 ATGGGATAAGGGTTAAGAGATTT
1 A-GGGTTTAGGGTTAAGAG-TTT
106051793 AGGGTTTAG
1 AGGGTTTAG
106051802 ATTAATTAGT
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
21 19 0.45
22 19 0.45
23 4 0.10
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.38
Consensus pattern (21 bp):
AGGGTTTAGGGTTAAGAGTTT
Found at i:106057249 original size:19 final size:19
Alignment explanation
Indices: 106057227--106057267 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
106057217 TTTATTGATA
106057227 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
106057245 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
106057264 TTTT
1 TTTT
106057268 GACTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:106057615 original size:43 final size:43
Alignment explanation
Indices: 106057523--106057606 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
106057513 AATTTCATGA
* *
106057523 CCTTTAGCGGTGTTTGTGGGAAAAGCGTTGCTAAAGGTCATAG
1 CCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATAG
* * *
106057566 CCTTTAGTGGCGTTTGTGGGAAAAGTGTCGTTAAAGGTCAT
1 CCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCAT
106057607 GATTTTTAGC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.13, G:0.32, T:0.32
Consensus pattern (43 bp):
CCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATAG
Found at i:106059856 original size:38 final size:38
Alignment explanation
Indices: 106059805--106059877 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
106059795 ATATTTTGCG
* *
106059805 GCGTTTTTCTCATAAACGCCGCTTTTGCTTTACTTTTA
1 GCGTTTTTCTCATAAACGCCGCTATTGCCTTACTTTTA
*
106059843 GCGTTTTTCTCATAAACGCCTCTATTGCCTTACTT
1 GCGTTTTTCTCATAAACGCCGCTATTGCCTTACTT
106059878 ATTGCAGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.16, C:0.26, G:0.12, T:0.45
Consensus pattern (38 bp):
GCGTTTTTCTCATAAACGCCGCTATTGCCTTACTTTTA
Found at i:106060127 original size:60 final size:60
Alignment explanation
Indices: 106060042--106060169 Score: 154
Period size: 60 Copynumber: 2.1 Consensus size: 60
106060032 TATTCGTAAG
* *
106060042 TTTAC-TTTTAGTCACTCAACATCAAAA-AGTTAGAAAATAGAT-ACTAAACTATTCAAAAA
1 TTTACATTTTAGTCACACAACATCAAAATA-TTAGAAAACA-ATCACTAAACTATTCAAAAA
* * * *
106060101 TTTACATTTTGGTCACACAACTTCAAAATATTATAAAACAATCACTAAACTTTTCAAAAA
1 TTTACATTTTAGTCACACAACATCAAAATATTAGAAAACAATCACTAAACTATTCAAAAA
*
106060161 TTTTCATTT
1 TTTACATTT
106060170 AAATCACTGG
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
59 7 0.12
60 51 0.86
61 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.35
Consensus pattern (60 bp):
TTTACATTTTAGTCACACAACATCAAAATATTAGAAAACAATCACTAAACTATTCAAAAA
Found at i:106063415 original size:131 final size:127
Alignment explanation
Indices: 106063155--106063581 Score: 338
Period size: 130 Copynumber: 3.3 Consensus size: 127
106063145 TAAAATAATT
* * * * * * * * *
106063155 GAATATCCCTTCAAAATTTCACTCATATCTTCTAAAAATCTTTTAAAACGAAGGCAATACTCGAT
1 GAATATCCCTT--TAATTGCACTCACATTTTCTAAAAA-CTTTCAAAACGAAGACGATATTCAAT
* * * * * * *
106063220 ATTT-GATAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAATACAA
63 GTTTGGA-AATTTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCAA-ACAA
106063284 TC
126 TC
* ** *
106063286 GAATATTCCTTTATATTCGCACTCATGTTTAT-TAAAAACACTTT-AAAACGAAGACGATGTTCA
1 GAATATCCCTTTA-ATT-GCACTCACATTT-TCT-AAAA-ACTTTCAAAACGAAGACGATATTCA
** *
106063349 ATGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGTTCGAAACA
61 ATGTTTGGAAATTTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTC-AAACA
*
106063414 ATT
125 ATC
* * * * * * * *
106063417 GAAGATCCCTTCGGAATTTCATTCACATTTTCTAAAATCTTTCAAAATGAAGGCGATATTCGATG
1 GAATATCCCTT--TAATTGCACTCACATTTTCTAAAAACTTTCAAAACGAAGACGATATTCAATG
* * * *
106063482 TTTGGAAATTTGAGAATAGAGCCCTATTGTGCTGGGTTGCGCTTTTTCATTTGTTCAAATTAATC
64 TTTGGAAATTTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCAAA-CAATC
* **
106063547 GAATATCCCTTTGGAATTTCACTCGTATTTTCTAA
1 GAATATCCCTTT--AATTGCACTCACATTTTCTAA
106063582 GGTGAGGCAA
Statistics
Matches: 236, Mismatches: 46, Indels: 29
0.76 0.15 0.09
Matches are distributed among these distances:
129 8 0.03
130 107 0.45
131 104 0.44
132 15 0.06
133 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (127 bp):
GAATATCCCTTTAATTGCACTCACATTTTCTAAAAACTTTCAAAACGAAGACGATATTCAATGTT
TGGAAATTTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCAAACAATC
Found at i:106064581 original size:20 final size:20
Alignment explanation
Indices: 106064556--106064597 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
106064546 AATATATTTG
106064556 ATTTGTTAATCTCACATAAA
1 ATTTGTTAATCTCACATAAA
106064576 ATTTGTTAATCTCACATAAA
1 ATTTGTTAATCTCACATAAA
106064596 AT
1 AT
106064598 GGTAGTTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.05, T:0.40
Consensus pattern (20 bp):
ATTTGTTAATCTCACATAAA
Found at i:106070513 original size:16 final size:16
Alignment explanation
Indices: 106070480--106070513 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
106070470 CTGTGCTGTT
* *
106070480 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
106070496 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
106070512 AA
1 AA
106070514 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:106073336 original size:21 final size:21
Alignment explanation
Indices: 106073310--106073350 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
106073300 AGACGAGCAA
* *
106073310 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
106073331 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
106073351 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:106075287 original size:16 final size:16
Alignment explanation
Indices: 106075254--106075287 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
106075244 GGAGATTGTT
* *
106075254 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
106075270 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
106075286 AA
1 AA
106075288 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:106077305 original size:19 final size:20
Alignment explanation
Indices: 106077256--106077318 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 20
106077246 AAATAGATAT
106077256 TTATT-TAATTATTAAATTA
1 TTATTATAATTATTAAATTA
*
106077275 TTGTTATAATTATT-AATTA
1 TTATTATAATTATTAAATTA
*
106077294 TTA-T-TAA-TATTATATTA
1 TTATTATAATTATTAAATTA
106077311 -TATTATAA
1 TTATTATAA
106077319 AATAAATTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
16 6 0.16
17 8 0.22
18 4 0.11
19 11 0.30
20 8 0.22
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
TTATTATAATTATTAAATTA
Found at i:106077713 original size:20 final size:20
Alignment explanation
Indices: 106077669--106077707 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
106077659 GCAGGGGAAG
*
106077669 GAAAGAAAGAAAGGAGAAAA
1 GAAAGAAAAAAAGGAGAAAA
106077689 GAAAGAAAAAAAGG-GAAAA
1 GAAAGAAAAAAAGGAGAAAA
106077708 TTAAAGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (20 bp):
GAAAGAAAAAAAGGAGAAAA
Found at i:106078822 original size:39 final size:39
Alignment explanation
Indices: 106078779--106078869 Score: 128
Period size: 39 Copynumber: 2.3 Consensus size: 39
106078769 TACTGTTATT
*
106078779 GTTACTGTTACTGATTCAACACTTTGTGTGTCGAATACC
1 GTTACTGTTACTGATTCAACACTTTATGTGTCGAATACC
* * * **
106078818 GTTACTGTTACCGATTCAGCACTTTATGTGTTGAATATT
1 GTTACTGTTACTGATTCAACACTTTATGTGTCGAATACC
106078857 GTTACTGTTACTG
1 GTTACTGTTACTG
106078870 TTCTGGATTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.42
Consensus pattern (39 bp):
GTTACTGTTACTGATTCAACACTTTATGTGTCGAATACC
Found at i:106078867 original size:45 final size:44
Alignment explanation
Indices: 106078729--106078871 Score: 152
Period size: 45 Copynumber: 3.3 Consensus size: 44
106078719 ACTGTGACTA
* *
106078729 TTACCGTTACTATTACCGATTCGGCACTTTGTGTGTCGAATACTG
1 TTACCGTTACTGTTACCGATTCAGCACTTTGTGTGTCGAATA-TG
** * *
106078774 TTATTGTTACTGTTACTGATTCAACACTTTGTGTGTCG-A-A--
1 TTACCGTTACTGTTACCGATTCAGCACTTTGTGTGTCGAATATG
* *
106078814 -TACCGTTACTGTTACCGATTCAGCACTTTATGTGTTGAATATTG
1 TTACCGTTACTGTTACCGATTCAGCACTTTGTGTGTCGAATA-TG
*
106078858 TTACTGTTACTGTT
1 TTACCGTTACTGTT
106078872 CTGGATTCGT
Statistics
Matches: 79, Mismatches: 13, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
39 31 0.39
40 1 0.01
41 1 0.01
43 1 0.01
44 1 0.01
45 44 0.56
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (44 bp):
TTACCGTTACTGTTACCGATTCAGCACTTTGTGTGTCGAATATG
Found at i:106079153 original size:18 final size:18
Alignment explanation
Indices: 106079129--106079215 Score: 70
Period size: 18 Copynumber: 4.9 Consensus size: 18
106079119 AATTGATTGA
106079129 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTAT
* * *
106079147 TATTGAATAATTGATTGT
1 TACTGAATAACTGATTAT
* *
106079165 TACCGAATAACTTG-CTAT
1 TACTGAATAAC-TGATTAT
* *
106079183 TACTGAATAAATAATTAT
1 TACTGAATAACTGATTAT
* *
106079201 T-CTGATTGACTGATT
1 TACTGAATAACTGATT
106079216 GTTAATAAAT
Statistics
Matches: 51, Mismatches: 16, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
17 11 0.22
18 38 0.75
19 2 0.04
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:106079184 original size:36 final size:36
Alignment explanation
Indices: 106079119--106079192 Score: 96
Period size: 36 Copynumber: 2.1 Consensus size: 36
106079109 ATAATCGATC
* * *
106079119 AATTGATTGATACTGAATAACTGATTATTATTGAAT
1 AATTGATTGATACCGAATAACTGACTATTACTGAAT
*
106079155 AATTGATTGTTACCGAATAACTTG-CTATTACTGAAT
1 AATTGATTGATACCGAATAAC-TGACTATTACTGAAT
106079191 AA
1 AA
106079193 ATAATTATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 31 0.94
37 2 0.06
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (36 bp):
AATTGATTGATACCGAATAACTGACTATTACTGAAT
Found at i:106079244 original size:28 final size:27
Alignment explanation
Indices: 106079192--106079244 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
106079182 TTACTGAATA
* *
106079192 AATAATTATTCTGATTGACTGATTGTT
1 AATAAATATTCTGATTGACTAATTGTT
*
106079219 AATAAATATTACTGATTGATTAATTG
1 AATAAATATT-CTGATTGACTAATTG
106079245 CTATTGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.45
Consensus pattern (27 bp):
AATAAATATTCTGATTGACTAATTGTT
Found at i:106079638 original size:14 final size:14
Alignment explanation
Indices: 106079619--106079646 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106079609 ATGAAGTTGA
106079619 AATAATTGATAAAG
1 AATAATTGATAAAG
106079633 AATAATTGATAAAG
1 AATAATTGATAAAG
106079647 TAAGTGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (14 bp):
AATAATTGATAAAG
Found at i:106080560 original size:121 final size:121
Alignment explanation
Indices: 106080428--106080657 Score: 406
Period size: 121 Copynumber: 1.9 Consensus size: 121
106080418 ATTTTAACAT
*
106080428 AATATATATAAATATTAAAAATATTTTTTTATTGCTATATCTATGTCCTCAATTTTTAAAAATTA
1 AATATATATAAATATTAAAAATATTTTTTTATTGCCATATCTATGTCCTCAATTTTTAAAAATTA
**
106080493 TCGTGTCCCTGTATCTGTATTGTGTCGTACCTGTATTGTGTGTCTGTGACATAAAA
66 TCGTGTCCCCATATCTGTATTGTGTCGTACCTGTATTGTGTGTCTGTGACATAAAA
* *
106080549 AATATATATAAATATTAAAAATATTTTTTTATTGCCGTATCTGTGTCCTCAATTTTTAAAAATTA
1 AATATATATAAATATTAAAAATATTTTTTTATTGCCATATCTATGTCCTCAATTTTTAAAAATTA
*
106080614 TCGTGTCCCCATATCTGTATTGTGTTGTACCTGTATTGTGTGTC
66 TCGTGTCCCCATATCTGTATTGTGTCGTACCTGTATTGTGTGTC
106080658 CGTGTCCATG
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 103 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (121 bp):
AATATATATAAATATTAAAAATATTTTTTTATTGCCATATCTATGTCCTCAATTTTTAAAAATTA
TCGTGTCCCCATATCTGTATTGTGTCGTACCTGTATTGTGTGTCTGTGACATAAAA
Found at i:106081524 original size:14 final size:14
Alignment explanation
Indices: 106081505--106081532 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106081495 TAACCTATAA
106081505 ATTGACATTCTATT
1 ATTGACATTCTATT
106081519 ATTGACATTCTATT
1 ATTGACATTCTATT
106081533 TTTCACAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50
Consensus pattern (14 bp):
ATTGACATTCTATT
Found at i:106082796 original size:23 final size:23
Alignment explanation
Indices: 106082770--106082815 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
106082760 ATTCGTTTAT
106082770 TTTATTATTC-TATATTTAAATTA
1 TTTATTATTCAT-TATTTAAATTA
*
106082793 TTTATTATTCATTATTTATATTA
1 TTTATTATTCATTATTTAAATTA
106082816 AGTTATCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTATTATTCATTATTTAAATTA
Found at i:106082806 original size:14 final size:14
Alignment explanation
Indices: 106082788--106082874 Score: 51
Period size: 14 Copynumber: 6.1 Consensus size: 14
106082778 TCTATATTTA
106082788 AATTATTTATTATT
1 AATTATTTATTATT
*
106082802 CATTATTTA-TATT
1 AATTATTTATTATT
106082815 AAGTTATCTTATTATAT
1 AA-TTAT-TTATTAT-T
*
106082832 ATATT-TTTAATA-T
1 A-ATTATTTATTATT
106082845 ATATTATCTTA-TATGT
1 A-ATTAT-TTATTAT-T
106082861 -ATTATTTATT-TT
1 AATTATTTATTATT
106082873 AA
1 AA
106082875 ACCCTTTTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 23
0.69 0.04 0.27
Matches are distributed among these distances:
12 1 0.02
13 16 0.27
14 21 0.36
15 11 0.19
16 5 0.08
17 4 0.07
18 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (14 bp):
AATTATTTATTATT
Found at i:106083182 original size:18 final size:18
Alignment explanation
Indices: 106083161--106083195 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
106083151 TATAGAATAG
*
106083161 CGTATTTATATATATATA
1 CGTATCTATATATATATA
*
106083179 CGTATCTATGTATATAT
1 CGTATCTATATATATAT
106083196 TTATCCATAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.49
Consensus pattern (18 bp):
CGTATCTATATATATATA
Found at i:106083458 original size:35 final size:34
Alignment explanation
Indices: 106083390--106083459 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 34
106083380 ATTACTATTA
* *
106083390 TTTCTTTATTATTTTATTACTGTTATTATTTTAT
1 TTTCTTTATTATTTCATTACTGCTATTATTTTAT
*
106083424 TTTCTTT-TTATTTCATTATGCTGCTCTTATTTTAT
1 TTTCTTTATTATTTCATTA--CTGCTATTATTTTAT
106083459 T
1 T
106083460 AGCATATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 10 0.32
34 7 0.23
35 14 0.45
ACGTcount: A:0.17, C:0.10, G:0.04, T:0.69
Consensus pattern (34 bp):
TTTCTTTATTATTTCATTACTGCTATTATTTTAT
Found at i:106086918 original size:26 final size:26
Alignment explanation
Indices: 106086887--106086994 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
106086877 TGAAATTCCC
*
106086887 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
106086913 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
106086939 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
106086965 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
106086991 ATCA
1 ATCA
106086995 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:106098844 original size:43 final size:42
Alignment explanation
Indices: 106098771--106098880 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 42
106098761 GGGCTTCAAC
* * * *
106098771 CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAA
1 CCCCTAAGCAGTAGGGTAACAGGTCAAATTTACAAA-CTTAAA
** * *
106098814 CCCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATTTAAA
1 CCCCTAAGCAGTAGGGTAACAGGTCAAATTTACAAACTTAAA
* *
106098856 CCCCTAAGCAGCAGGGAAACAGGTC
1 CCCCTAAGCAGTAGGGTAACAGGTC
106098881 GAGCTTTAAC
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 27 0.48
43 29 0.52
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (42 bp):
CCCCTAAGCAGTAGGGTAACAGGTCAAATTTACAAACTTAAA
Found at i:106099281 original size:87 final size:86
Alignment explanation
Indices: 106099059--106099323 Score: 261
Period size: 86 Copynumber: 3.0 Consensus size: 86
106099049 GGATATCTAC
* * *
106099059 AGATCTTATCACCCTAAGCAGTAGGGAAACAGATCAAATG-CAATGGGTCTTAAACCCCTAAGCA
1 AGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCAAA-GACAATGAGCCTTAAACCCCTAAGCA
* **
106099123 GTAGGGTAACAGAC-CAAATTGC
65 GTAGGGTAACAG-CTGAAATTAT
* * * * *
106099145 AGATCTTATCTCCCTCAGTAGCAGGGAAACAGATCGAAGGTA-AAAGAGCCTTAAACCCCTAAGC
1 AGATCTTATCTCCCTAAGCAGTAGGGAAACAGATC-AAAG-ACAATGAGCCTTAAACCCCTAAGC
*
106099209 AGTAGGGTAACTAGCTGAATTTAT
64 AGTAGGGTAAC-AGCTGAAATTAT
* * * * *
106099233 AGATCTTACCTCCCTAAGCAGTAGTGG-AGCAGATCAAAGACGATGAGCCTT-GACCCCTAAGTA
1 AGATCTTATCTCCCTAAGCAGTAG-GGAAACAGATCAAAGACAATGAGCCTTAAACCCCTAAGCA
*
106099296 GCAGGGTAACATGCTGAAAATTAT
65 GTAGGGTAACA-GCTG-AAATTAT
106099320 AGAT
1 AGAT
106099324 TCTATCTTCC
Statistics
Matches: 146, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
85 1 0.01
86 56 0.38
87 54 0.37
88 33 0.23
89 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (86 bp):
AGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCAAAGACAATGAGCCTTAAACCCCTAAGCAG
TAGGGTAACAGCTGAAATTAT
Found at i:106100750 original size:4 final size:4
Alignment explanation
Indices: 106100741--106100766 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
106100731 TTAACCCCTT
106100741 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
106100767 CGTTTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:106100783 original size:16 final size:16
Alignment explanation
Indices: 106100741--106100775 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
106100731 TTAACCCCTT
**
106100741 TTTATTTATTTATTTA
1 TTTATTTATTCGTTTA
106100757 TTTATTTATTCGTTTA
1 TTTATTTATTCGTTTA
106100773 TTT
1 TTT
106100776 TATTATTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTATTTATTCGTTTA
Found at i:106100800 original size:23 final size:23
Alignment explanation
Indices: 106100774--106100819 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
106100764 ATTCGTTTAT
106100774 TTTATTATTC-TATATTTAAATTA
1 TTTATTATTCAT-TATTTAAATTA
*
106100797 TTTATTATTCATTATTTATATTA
1 TTTATTATTCATTATTTAAATTA
106100820 AGTTATCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTATTATTCATTATTTAAATTA
Found at i:106100810 original size:14 final size:14
Alignment explanation
Indices: 106100792--106100878 Score: 51
Period size: 14 Copynumber: 6.1 Consensus size: 14
106100782 TCTATATTTA
106100792 AATTATTTATTATT
1 AATTATTTATTATT
*
106100806 CATTATTTA-TATT
1 AATTATTTATTATT
106100819 AAGTTATCTTATTATAT
1 AA-TTAT-TTATTAT-T
*
106100836 ATATT-TTTAATA-T
1 A-ATTATTTATTATT
106100849 ATATTATCTTA-TATGT
1 A-ATTAT-TTATTAT-T
106100865 -ATTATTTATT-TT
1 AATTATTTATTATT
106100877 AA
1 AA
106100879 ACCCTTTTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 23
0.69 0.04 0.27
Matches are distributed among these distances:
12 1 0.02
13 16 0.27
14 21 0.36
15 11 0.19
16 5 0.08
17 4 0.07
18 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (14 bp):
AATTATTTATTATT
Found at i:106101186 original size:18 final size:18
Alignment explanation
Indices: 106101165--106101199 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
106101155 TATAGAATAG
*
106101165 CGTATTTATATATATATA
1 CGTATCTATATATATATA
*
106101183 CGTATCTATGTATATAT
1 CGTATCTATATATATAT
106101200 TTATCCATAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.49
Consensus pattern (18 bp):
CGTATCTATATATATATA
Found at i:106101438 original size:17 final size:16
Alignment explanation
Indices: 106101390--106101440 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
106101380 AGTATTACTA
106101390 TTATTTCTTTATTATT
1 TTATTTCTTTATTATT
*
106101406 TTATTACTGTTATTATT
1 TTATTTCT-TTATTATT
*
106101423 TTATTTTCTTTTTTATT
1 TTA-TTTCTTTATTATT
106101440 T
1 T
106101441 CATTATGCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
16 7 0.23
17 19 0.63
18 4 0.13
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.75
Consensus pattern (16 bp):
TTATTTCTTTATTATT
Found at i:106108684 original size:16 final size:16
Alignment explanation
Indices: 106108659--106108690 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
106108649 ATCCGGAAGA
106108659 CTTATATGCATGAATT
1 CTTATATGCATGAATT
*
106108675 CTTATGTGCATGAATT
1 CTTATATGCATGAATT
106108691 TCTCCTTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (16 bp):
CTTATATGCATGAATT
Found at i:106112887 original size:47 final size:49
Alignment explanation
Indices: 106112765--106112944 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
106112755 TGTAACCCGC
* * * *
106112765 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
106112811 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
106112861 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
106112905 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
106112945 TCAACGATTC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:106112933 original size:94 final size:93
Alignment explanation
Indices: 106112773--106112944 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
106112763 GCCCATAAGT
* * *
106112773 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
106112838 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
106112866 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
106112931 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
106112945 TCAACGATTC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:106115454 original size:18 final size:18
Alignment explanation
Indices: 106115418--106115551 Score: 200
Period size: 18 Copynumber: 7.5 Consensus size: 18
106115408 AATCATATCT
*
106115418 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
106115437 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
106115455 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
106115472 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
106115490 TCTAAGGTTGCAATCATA
1 TCTAAGATTGCAATCATA
106115508 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
* *
106115526 TTTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
106115543 TCTAAGATT
1 TCTAAGATT
106115552 ACATATCATT
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
17 30 0.28
18 65 0.61
19 11 0.10
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:106115476 original size:35 final size:36
Alignment explanation
Indices: 106115418--106115560 Score: 211
Period size: 35 Copynumber: 4.0 Consensus size: 36
106115408 AATCATATCT
106115418 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
106115455 TCTAAGATTG-TATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
*
106115490 TCTAAGGTTGCA-ATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
* *
106115526 TTTAAGATTG-TATCATATCTAAGATTACATATCAT
1 TCTAAGATTGATATCATATCTAAGATTGCA-ATCAT
106115561 TGAAGATTAT
Statistics
Matches: 98, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
35 51 0.52
36 37 0.38
37 10 0.10
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (36 bp):
TCTAAGATTGATATCATATCTAAGATTGCAATCATA
Found at i:106115501 original size:53 final size:53
Alignment explanation
Indices: 106115418--106115560 Score: 198
Period size: 53 Copynumber: 2.6 Consensus size: 53
106115408 AATCATATCT
*
106115418 TCTAAGATTGTATATCATATCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTG-A-ATCATATCTAAGATTGCAATCATATCTAAGATTGCAATCATA
*
106115472 TCTAAGATTGCAATCATATCTAAGGTTGCAATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATATCTAAGATTGCAATCATATCTAAGATTGCAATCATA
* * *
106115526 TTTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGAATCATATCTAAGATTGCA-ATCAT
106115561 TGAAGATTAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 49 0.61
54 31 0.39
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (53 bp):
TCTAAGATTGAATCATATCTAAGATTGCAATCATATCTAAGATTGCAATCATA
Found at i:106116167 original size:83 final size:83
Alignment explanation
Indices: 106115947--106116299 Score: 625
Period size: 83 Copynumber: 4.2 Consensus size: 83
106115937 TTCGATTTGT
* * *
106115947 AAGGATGTCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
*
106116012 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
106116030 AAGGATGCCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCG
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCG
*
106116095 ATTTGTTCCTTGTAACCAC
65 ATTTGTTCCTTGTAAGCAC
*
106116114 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
106116179 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
106116197 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
106116262 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
106116280 AAGGATGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
106116300 GATCTGCTTC
Statistics
Matches: 260, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
83 182 0.70
84 78 0.30
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:106116938 original size:119 final size:119
Alignment explanation
Indices: 106116223--106116935 Score: 1183
Period size: 119 Copynumber: 6.0 Consensus size: 119
106116213 CTTGAGTCTG
* * * * * * *
106116223 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
106116288 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
106116342 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
106116407 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
106116461 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTTCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
106116526 CAAATCATCTTGGATTTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
106116580 TTTGAGAACGTCTGAAAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
106116645 AAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
106116699 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCATTGTAAACACAGGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* * *
106116764 CAAATTATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
106116818 TTTGAGAATGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATCC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
106116883 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
106116936 CTTCGATCTG
Statistics
Matches: 559, Mismatches: 35, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 559 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:106116975 original size:44 final size:44
Alignment explanation
Indices: 106116927--106117106 Score: 177
Period size: 44 Copynumber: 4.1 Consensus size: 44
106116917 TGAAGGTTAG
106116927 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
106116971 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * * ** *
106117013 ATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCATAGGAATGTTAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAA
* * *
106117059 ATCTACTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
106117103 ATCT
1 ATCT
106117107 TGTTTCTTTG
Statistics
Matches: 107, Mismatches: 23, Indels: 12
0.75 0.16 0.08
Matches are distributed among these distances:
42 2 0.02
43 13 0.12
44 78 0.73
45 12 0.11
46 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:106117999 original size:12 final size:12
Alignment explanation
Indices: 106117982--106118032 Score: 61
Period size: 12 Copynumber: 4.3 Consensus size: 12
106117972 CCATTTTTTC
106117982 TTTTTCTCTTTA
1 TTTTTCTCTTTA
*
106117994 TTTTTCTCTTTT
1 TTTTTCTCTTTA
*
106118006 TATTTTCTTTTTA
1 T-TTTTCTCTTTA
106118019 -TTTTCT-TTTA
1 TTTTTCTCTTTA
106118029 TTTT
1 TTTT
106118033 CTTTTTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
10 4 0.12
11 9 0.26
12 12 0.35
13 9 0.26
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTTCTCTTTA
Found at i:106118027 original size:10 final size:10
Alignment explanation
Indices: 106118003--106118041 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
106117993 ATTTTTCTCT
106118003 TTTTATTTTC
1 TTTTATTTTC
106118013 TTTTTATTTTC
1 -TTTTATTTTC
106118024 TTTTATTTTC
1 TTTTATTTTC
106118034 TTTT-TTTT
1 TTTTATTTT
106118042 TTGAAATAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 4 0.14
10 14 0.50
11 10 0.36
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTATTTTC
Done.