Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 331 of 343
Found at i:106118029 original size:21 final size:21
Alignment explanation
Indices: 106118003--106118043 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
106117993 ATTTTTCTCT
106118003 TTTTATTTTCTTTTTATTTTC
1 TTTTATTTTCTTTTTATTTTC
*
106118024 TTTTATTTTCTTTTTTTTTT
1 TTTTATTTTCTTTTTATTTT
106118044 GAAATAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTATTTTCTTTTTATTTTC
Found at i:106118041 original size:25 final size:26
Alignment explanation
Indices: 106117975--106118042 Score: 70
Period size: 25 Copynumber: 2.6 Consensus size: 26
106117965 GGCCTCTCCA
106117975 TTTTTTCTTTTTCTCTTTATTTTTCTCT
1 TTTTTTCTTTTT-T-TTTATTTTTCTCT
* *
106118003 TTTTAT-TTTCTTTTTA-TTTTCT-T
1 TTTTTTCTTTTTTTTTATTTTTCTCT
106118026 TTATTTTCTTTTTTTTT
1 TT-TTTTCTTTTTTTTT
106118043 TGAAATAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
23 3 0.09
24 9 0.26
25 12 0.35
26 1 0.03
27 4 0.12
28 5 0.15
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (26 bp):
TTTTTTCTTTTTTTTTATTTTTCTCT
Found at i:106118042 original size:10 final size:10
Alignment explanation
Indices: 106117982--106118042 Score: 68
Period size: 11 Copynumber: 5.7 Consensus size: 10
106117972 CCATTTTTTC
*
106117982 TTTTTCTCTT
1 TTTTTTTCTT
106117992 TATTTTTCTCTT
1 T-TTTTT-TCTT
106118004 TTTATTTTCTT
1 TTT-TTTTCTT
106118015 TTTATTTTCTT
1 TTT-TTTTCTT
*
106118026 TTATTTTCTT
1 TTTTTTTCTT
106118036 TTTTTTT
1 TTTTTTT
106118043 TGAAATAGAA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
10 14 0.31
11 23 0.51
12 8 0.18
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:106118043 original size:11 final size:11
Alignment explanation
Indices: 106118000--106118042 Score: 72
Period size: 11 Copynumber: 4.1 Consensus size: 11
106117990 TTTATTTTTC
106118000 TCTTTTTATTT
1 TCTTTTTATTT
106118011 TCTTTTTATTT
1 TCTTTTTATTT
106118022 TC-TTTTATTT
1 TCTTTTTATTT
106118032 TCTTTTT-TTT
1 TCTTTTTATTT
106118042 T
1 T
106118043 TGAAATAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 14 0.45
11 17 0.55
ACGTcount: A:0.07, C:0.09, G:0.00, T:0.84
Consensus pattern (11 bp):
TCTTTTTATTT
Found at i:106124406 original size:17 final size:18
Alignment explanation
Indices: 106124353--106124467 Score: 164
Period size: 17 Copynumber: 6.5 Consensus size: 18
106124343 AATCATATCT
*
106124353 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
106124372 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
106124390 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
106124407 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
106124424 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
106124442 TTTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
106124459 TCTAAGATT
1 TCTAAGATT
106124468 ACATATCATT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
17 47 0.53
18 31 0.35
19 10 0.11
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:106124411 original size:35 final size:35
Alignment explanation
Indices: 106124353--106124476 Score: 171
Period size: 35 Copynumber: 3.5 Consensus size: 35
106124343 AATCATATCT
*
106124353 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTG-TATCATA
106124390 TCTAAGATTG-TATCATATCTAAGATTGTATCATA
1 TCTAAGATTGATATCATATCTAAGATTGTATCATA
*
106124424 TCTAAGATTGCA-ATCATATTTAAGATTGTATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGTATCATA
*
106124459 TCTAAGATTACATATCAT
1 TCTAAGATT-GATATCAT
106124477 TGAAGATTAT
Statistics
Matches: 80, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
34 16 0.20
35 49 0.61
36 5 0.06
37 10 0.12
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (35 bp):
TCTAAGATTGATATCATATCTAAGATTGTATCATA
Found at i:106124432 original size:52 final size:53
Alignment explanation
Indices: 106124353--106124476 Score: 205
Period size: 52 Copynumber: 2.3 Consensus size: 53
106124343 AATCATATCT
106124353 TCTAAGATTGTATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
106124407 TCTAAGATTG-TATCATATCTAAGATTGCAATCATATTTAAGATTGTATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
106124459 TCTAAGATTACATATCAT
1 TCTAAGATT-GATATCAT
106124477 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
52 50 0.76
54 16 0.24
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (53 bp):
TCTAAGATTGATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:106131428 original size:47 final size:49
Alignment explanation
Indices: 106131306--106131485 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
106131296 TGTAACCCTC
* * * *
106131306 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
106131352 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
106131402 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
106131446 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
106131486 TCAACCATTC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:106131474 original size:94 final size:93
Alignment explanation
Indices: 106131314--106131485 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
106131304 TCCCATAAGT
* * *
106131314 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
106131379 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
106131407 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
106131472 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
106131486 TCAACCATTC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:106131730 original size:23 final size:23
Alignment explanation
Indices: 106131703--106131750 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
106131693 TCCTATATTT
106131703 AACATCAATAACTTAAAAATAAC
1 AACATCAATAACTTAAAAATAAC
106131726 AACATCAATAACTTAAAAATAAC
1 AACATCAATAACTTAAAAATAAC
106131749 AA
1 AA
106131751 TTATGCTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.62, C:0.17, G:0.00, T:0.21
Consensus pattern (23 bp):
AACATCAATAACTTAAAAATAAC
Found at i:106131961 original size:30 final size:30
Alignment explanation
Indices: 106131927--106131986 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
106131917 CCTTAATACG
106131927 AACTTTGGCAAAATTAC-CATTTTACCCCTA
1 AACTTTGGCAAAATTACAC-TTTTACCCCTA
* * *
106131957 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
106131987 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:106135497 original size:21 final size:21
Alignment explanation
Indices: 106135472--106135653 Score: 99
Period size: 20 Copynumber: 9.2 Consensus size: 21
106135462 TAGCCTTCGG
*
106135472 GCTTCCTTTTAGCACTTGTGT
1 GCTTCCATTTAGCACTTGTGT
*
106135493 GCTT-CAGTTAGC-CTTCG-G-
1 GCTTCCATTTAGCACTT-GTGT
106135511 GCTTCCATTTAGCACTTGTGT
1 GCTTCCATTTAGCACTTGTGT
*
106135532 GCTT-CAGTTAGC-CTTCG-G-
1 GCTTCCATTTAGCACTT-GTGT
*
106135550 GCTTCCATTTAGCACTTATGT
1 GCTTCCATTTAGCACTTGTGT
** *
106135571 G-TTTTAGTTAGC-CTTCG-G-
1 GCTTCCATTTAGCACTT-GTGT
* *
106135589 GCTTCCGTTTAGCACTTATGT
1 GCTTCCATTTAGCACTTGTGT
*
106135610 GCTT-CAGTTAGC-CTT-TAG-
1 GCTTCCATTTAGCACTTGT-GT
** *
106135628 GCTTCTGTTTAGCACTTATGT
1 GCTTCCATTTAGCACTTGTGT
106135649 GCTTC
1 GCTTC
106135654 AGCTAGACTT
Statistics
Matches: 121, Mismatches: 20, Indels: 40
0.67 0.11 0.22
Matches are distributed among these distances:
18 14 0.12
19 43 0.36
20 45 0.37
21 19 0.16
ACGTcount: A:0.13, C:0.24, G:0.21, T:0.42
Consensus pattern (21 bp):
GCTTCCATTTAGCACTTGTGT
Found at i:106135500 original size:39 final size:39
Alignment explanation
Indices: 106135454--106135671 Score: 328
Period size: 39 Copynumber: 5.6 Consensus size: 39
106135444 GCTCTAATGA
* *
106135454 GCTTCAGTTAGCCTTCGGGCTTCCTTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
*
106135493 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
106135532 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
* * *
106135571 GTTTTAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
** **
106135610 GCTTCAGTTAGCCTTTAGGCTTCTGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
* *
106135649 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
106135672 AGATCACGAT
Statistics
Matches: 165, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 165 1.00
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.40
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
Found at i:106137685 original size:45 final size:45
Alignment explanation
Indices: 106137634--106138200 Score: 307
Period size: 44 Copynumber: 12.4 Consensus size: 45
106137624 AATTCACAAG
* * *
106137634 TCTTATCTCCTTGAAGTTGTAGTGGAGCAGACTGAAGATAGTAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAA
** * * * *
106137679 TCTTATCTCTATTAAGTTGCAGTAGAGCAGATTAAAGCTA-TAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAA
* * * * * ** * *
106137723 TCCTATACT-TCTAAAGTTGCAGTAGGTCAGATCAAACCT-ACCATGGTGAA
1 TCTTAT-CTCCCTGAAGTTGCAGT-GG--AG--CAGA-TTGAAGATAGTAAA
* * **
106137773 TCTCT-TCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCCAG-AAA
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAA
* * * * * * *
106137817 CCTTATCCCCCTGAAGTTGCAATGGGGCA-AGTTGAAGTTA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGATAGTAAA
* **
106137861 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAA
* * * *
106137906 TTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAATTATAATTCACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG-AA-GAT-AGT---AAA
* * *
106137957 CCTTATCTCCCTGATGTTGCAGTGGAGCAGGTTGAAG-T--TAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAA
* * **
106137999 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAA
* * * *
106138045 TCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT-AGT-A-A-A
* * ** ** *
106138096 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCCA-TCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAA
* * *
106138140 TCTTATCTCCCTGAAGTTACAATGGAGCAGGTTGAAG-T--TAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAA
*
106138182 GTCTTATCTCCTTGAAGTT
1 -TCTTATCTCCCTGAAGTT
106138201 AAAAGAATCT
Statistics
Matches: 392, Mismatches: 97, Indels: 68
0.70 0.17 0.12
Matches are distributed among these distances:
42 6 0.02
43 52 0.13
44 117 0.30
45 108 0.28
46 4 0.01
47 8 0.02
48 4 0.01
49 9 0.02
50 21 0.05
51 63 0.16
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAA
Found at i:106137897 original size:44 final size:44
Alignment explanation
Indices: 106137778--106138200 Score: 309
Period size: 44 Copynumber: 9.3 Consensus size: 44
106137768 GTGAATCTCT
* * ** * **
106137778 TCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCCAGAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTA
* * *
106137822 TCCCCCTGAAGTTGCAATGGGGCA-AGTTGAAGTTACAAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGTTACAAGTCTTA
* * *
106137866 TCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAA-TTTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-C-AAGTCTTA
* * **
106137911 TCTCCCTGAAGTTGCAGTGGAGTAGATTGAAATTATAATTCACAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTG-----A-AGTT-ACAAGTCTTA
* *
106137962 TCTCCCTGATGTTGCAGTGGAGCAGGTTGAAGTTA-AAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTA
* **
106138005 TCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAA-TCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-C-AAGTCTTA
* * *
106138050 TTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATCACAGATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-T--A-CA-AG-TCTTA
* * ** **
106138101 TCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCCATCAA-TCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAGTCTTA
* * *
106138145 TCTCCCTGAAGTTACAATGGAGCAGGTTGAAGTTA-AAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTA
*
106138188 TCTCCTTGAAGTT
1 TCTCCCTGAAGTT
106138201 AAAAGAATCT
Statistics
Matches: 297, Mismatches: 59, Indels: 47
0.74 0.15 0.12
Matches are distributed among these distances:
42 2 0.01
43 54 0.18
44 92 0.31
45 69 0.23
46 6 0.02
47 4 0.01
48 1 0.00
49 3 0.01
50 3 0.01
51 62 0.21
52 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTA
Found at i:106138015 original size:183 final size:181
Alignment explanation
Indices: 106137818--106138200 Score: 393
Period size: 183 Copynumber: 2.1 Consensus size: 181
106137808 AGCCAGAAAC
* * * **
106137818 CTTATCCCCCTGAAGTTGCAATGGGGCA-AGTTGAAGTTA-C-AAGTCTTATCTCCCTGAAGTTG
1 CTTATCTCCCTGAAGTTGCAATGGAGCAGA-CTGAAGACAGCGAA-TCTTATCTCCCTGAAGTTG
* * * * * *
106137880 CAGTGGAGCAGACTGAAG-AT-AGC-GA-ATTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGA
64 CAGTGGAACAGACTGAAGCATAAGCACAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TCA
* * * *
106137941 AATTATAATTCACAAACCTTATCTCCCTGATGTTGCAGTGGAGCAGGTTGAAGTTAAAGT
128 AA--ACAA-T--C-AACCTTATCTCCCTGAAGTTACAATGGAGCAGGTTGAAGTTAAAGT
* * *
106138001 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGACAGCGAATCTTATCTCCCTGAAGTTGCA
* * *
106138066 GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
66 GTGGAACAGACTGAAGC-AT-AAGCACAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAA
* * *
106138131 AGCCATCAATCTTATCTCCCTGAAGTTACAATGGAGCAGGTTGAAGTTAAAGT
129 AACAATCAACCTTATCTCCCTGAAGTTACAATGGAGCAGGTTGAAGTTAAAGT
*
106138184 CTTATCTCCTTGAAGTT
1 CTTATCTCCCTGAAGTT
106138201 AAAAGAATCT
Statistics
Matches: 166, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
183 89 0.54
184 36 0.22
185 2 0.01
186 3 0.02
187 1 0.01
188 2 0.01
189 5 0.03
190 28 0.17
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (181 bp):
CTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGACAGCGAATCTTATCTCCCTGAAGTTGCA
GTGGAACAGACTGAAGCATAAGCACAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAA
CAATCAACCTTATCTCCCTGAAGTTACAATGGAGCAGGTTGAAGTTAAAGT
Found at i:106138019 original size:43 final size:43
Alignment explanation
Indices: 106137958--106138200 Score: 193
Period size: 43 Copynumber: 5.4 Consensus size: 43
106137948 ATTCACAAAC
* *
106137958 CTTATCTCCCTGATGTTGCAGTGGAGCAGGTTGAAGTTAAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAAAGT
* **
106138001 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAA-T
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA---AAGT
* * *
106138046 CTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATCACAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-T--A--A-AG-T
* * ** * *
106138097 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCCATCAA-T
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--TTAAAGT
* * *
106138141 CTTATCTCCCTGAAGTTACAATGGAGCAGGTTGAAGTTAAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAAAGT
*
106138184 CTTATCTCCTTGAAGTT
1 CTTATCTCCCTGAAGTT
106138201 AAAAGAATCT
Statistics
Matches: 156, Mismatches: 32, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
42 3 0.02
43 51 0.33
44 30 0.19
45 33 0.21
46 3 0.02
47 1 0.01
48 1 0.01
49 2 0.01
51 31 0.20
52 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAAAGT
Found at i:106138028 original size:139 final size:139
Alignment explanation
Indices: 106137814--106138169 Score: 453
Period size: 139 Copynumber: 2.5 Consensus size: 139
106137804 TTGAAGCCAG
* * * *
106137814 AAACCTTATCCCCCTGAAGTTGCAATGGGGCAAGTTGAAGTTACAAGTCTTATCTCCCTGAAGTT
1 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-AAGTCTTATCTCCCTGAAGTT
* * ** *
106137879 GCAGTGGAGCAGACTGAAGATAGCGAATTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAAT
65 GCAGTGGAGCAGACTGAAGACAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAAC
*
106137944 TATAATTCAC
130 TATAAATCAC
*
106137954 AAACCTTATCTCCCTGATGTTGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
1 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * *
106138019 CAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCT
66 CAGTGGAGCAGACTGAAGACAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAACT
106138084 ATAAATCAC
131 ATAAATCAC
* * * * * ** * *
106138093 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCCATCAA-TCTTATCTCCCTGAAGT
1 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG--TTAAAGTCTTATCTCCCTGAAGT
* *
106138157 TACAATGGAGCAG
64 TGCAGTGGAGCAG
106138170 GTTGAAGTTA
Statistics
Matches: 188, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
139 119 0.63
140 66 0.35
141 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (139 bp):
AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
CAGTGGAGCAGACTGAAGACAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAACT
ATAAATCAC
Found at i:106138358 original size:44 final size:44
Alignment explanation
Indices: 106138249--106138372 Score: 130
Period size: 41 Copynumber: 2.9 Consensus size: 44
106138239 CTGAAGCTAT
* * * *
106138249 AAATCAC-AGATCTTATCTCTCTGAAGTTGCAATAGAGCAGATCA
1 AAATCACAAG-TCTTATCTCCCTGAAGTTACAGTGGAGCAGATCA
* * * *
106138293 AAAT-A-AA-CCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTTA
1 AAATCACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGATCA
*
106138334 AAATCACAAGTCTTATCTCCCTGAAGCTACAGTGGAGCA
1 AAATCACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCA
106138373 TACTAAAGAT
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
41 31 0.47
42 1 0.02
43 4 0.06
44 30 0.45
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.27
Consensus pattern (44 bp):
AAATCACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGATCA
Found at i:106138468 original size:101 final size:101
Alignment explanation
Indices: 106138287--106138473 Score: 268
Period size: 101 Copynumber: 1.9 Consensus size: 101
106138277 GCAATAGAGC
* * *
106138287 AGATCAAAATAAACCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTTAAAATCACAAGTCTTATCT
1 AGATCAAAACAAACCTTATCTCCCTAAAGTTTCAGTGGAGCAGGTGAAAATCACAAGTCTTATCT
106138352 CCCTGAAGCTACAGTGGAGCATACTAAAGATAGCAA
66 CCCTGAAGCTACAGTGGAGCATACTAAAGATAGCAA
* * * *
106138388 AGATCAAAACAAACCTTATCTCCCTAAAGTTGT-AGTGGAGTAGGTGGAAGTCACAAGTTTTATC
1 AGATCAAAACAAACCTTATCTCCCTAAAGTT-TCAGTGGAGCAGGTGAAAATCACAAGTCTTATC
* * *
106138452 TCTCTGAAGTTGCAGTGGAGCA
65 TCCCTGAAGCTACAGTGGAGCA
106138474 GACTGAATAT
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
101 74 0.99
102 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.26
Consensus pattern (101 bp):
AGATCAAAACAAACCTTATCTCCCTAAAGTTTCAGTGGAGCAGGTGAAAATCACAAGTCTTATCT
CCCTGAAGCTACAGTGGAGCATACTAAAGATAGCAA
Found at i:106138605 original size:44 final size:44
Alignment explanation
Indices: 106138542--106139424 Score: 276
Period size: 44 Copynumber: 19.6 Consensus size: 44
106138532 TAAATCATAG
* * * *
106138542 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCCATCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACATCA
* * * * * *
106138586 ATCTTATCTCCCTGAAGTTGCAATGGAGTAGGTTGAAG--TTAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACATCA
* * * * *
106138628 AGTCTTATCTCCTTGAAGTTGCAATGGAGCACA-CTGAAGATAGCGA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC-GAAGACATC-A
* * * *
106138674 TTCTTAT-TACCCTAAAGTTGCAGTGGAACAGA-CTGAAGCTATAAATCACA
1 ATCTTATCT-CCCTGAAGTTGCAGTGGAGCAGATC-GAAG----ACAT--CA
* * * * * *
106138724 GATCTTATCTCTCTGAAATTACAGTAGAGTAGATC-AAAACA--A
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACATCA
* * * * *
106138766 ACCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTTGAAGTCA-CA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACATCA
* * * *
106138809 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAATATAGTGA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC-GAAGACA-TCA
* * * * * * *
106138855 ATTTTATTTCCCTGAATTTGCAGTGGAACAGATTGAAGCTATAAATTATA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAG----ACA-T-CA
* * *
106138905 GATCTTATCTCTCTGAAGTTGTAGTAGG-GCAGATC-AAAACA--A
1 -ATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATCGAAGACATCA
* * * * *
106138947 ACCTTATCTCCCTAAAGTTGTAGTGGAGCAGATGGAAGTCA-CA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACATCA
* * * *
106138990 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGA-CTGAAAATAATGA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC-GAAGA-CATCA
* * * *
106139036 ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAG----ACAT--CA
** * * * *
106139086 GATCTTATCTATCTGAAGTTGCAGTAGAGAAAATC-AAAACA--A
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACATCA
* * * * *
106139128 ACCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTTGAAGTCAT-A
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACATCA
* * * * *
106139171 AGTCTTATCTCCCTGAAGCTGCAGTGGAACAGA-CTAAAGATAGCGA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC-GAAGACATC-A
* * ** * *
106139217 ATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTGAAGCTATAAATCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAG----ACAT--C-A
* * * * *
106139268 ATCTTATCTCTCTGGAG-CGACAGT-AAGGCAGAT-TATA-ACA--A
1 ATCTTATCTCCCTGAAGTTG-CAGTGGA-GCAGATCGA-AGACATCA
* * * * *
106139309 ACCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTGGAAGTCA-CA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACATCA
* * *
106139352 AGTATTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTGAAGATAGTGA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC-GAAGACA-TCA
* *
106139398 ATCTTATTTCCCTGAAGTTGTAGTGGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGA
106139425 ATAGATTAAA
Statistics
Matches: 608, Mismatches: 162, Indels: 137
0.67 0.18 0.15
Matches are distributed among these distances:
40 2 0.00
41 102 0.17
42 23 0.04
43 39 0.06
44 157 0.26
45 144 0.24
46 17 0.03
48 3 0.00
49 8 0.01
50 12 0.02
51 97 0.16
52 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACATCA
Found at i:106138894 original size:181 final size:181
Alignment explanation
Indices: 106138388--106139487 Score: 1429
Period size: 181 Copynumber: 6.1 Consensus size: 181
106138378 AAGATAGCAA
* * *
106138388 AGATCAAAACAAACCTTATCTCCCTAAAGTTGT-AGTGGAGTAGGTGGAAGTCACAAGTTTTATC
1 AGATCAAAACAAACCTTATCTCCCTGAAGTT-TCAGTGGAGCAGGTGGAAGTCACAAGTCTTATC
* * * **
106138452 TCTCTGAAGTTGCAGTGGAGCAGACTGAATATAGCGAATCTTATTTTTTTCTGAAGTTGCAGTGG
65 TCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTTA--TTTCCCTGAAGTTGCAGTGG
* *
106138517 AACAGATTGAAGTTATAAATCATAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
128 AACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
* * * * * * *
106138571 AGATCAAAGCCATCAATCTTATCTCCCTGAAGTTGCAATGGAGTAGGTTGAAGTTA-AAGTCTTA
1 AGATCAAA-ACA--AACCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTGGAAGTCACAAGTCTTA
* * * * * * *
106138635 TCTCCTTGAAGTTGCAATGGAGCACACTGAAGATAGCGATTCTTATTACCCTAAAGTTGCAGTGG
63 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGG
* * * *
106138700 AACAGACTGAAGCTATAAATCACAGATCTTATCTCTCTGAAATTACAGTAGAGT
128 AACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
*
106138754 AGATCAAAACAAACCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTTGAAGTCACAAGTCTTATCT
1 AGATCAAAACAAACCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTGGAAGTCACAAGTCTTATCT
* * * *
106138819 CCCTGAAGTTGCAGTGGAGCAGACTAAATATAGTGAATTTTATTTCCCTGAATTTGCAGTGGAAC
66 CCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
* * * *
106138884 AGATTGAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGTAGTAGGGC
131 AGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
* *
106138935 AGATCAAAACAAACCTTATCTCCCTAAAGTTGT-AGTGGAGCAGATGGAAGTCACAAGTCTTATC
1 AGATCAAAACAAACCTTATCTCCCTGAAGTT-TCAGTGGAGCAGGTGGAAGTCACAAGTCTTATC
* **
106138999 TCCCTGAAGTTGTAGTGGAGCAGACTGAAA-ATAATGAATCTTATTTCCCTGAAGTTGCAGTGGA
65 TCCCTGAAGTTGCAGTGGAGCAGACT-AAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGA
* *
106139063 ACAGATTGAAGCTATAAATCACAGATCTTATCTATCTGAAGTTGCAGTAGAGA
129 ACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
* * *
106139116 AAATCAAAACAAACCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTTGAAGTCATAAGTCTTATCT
1 AGATCAAAACAAACCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTGGAAGTCACAAGTCTTATCT
* * * *
106139181 CCCTGAAGCTGCAGTGGAACAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAAT
66 CCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
* * *
106139246 AGATTGAAGCTATAAATCACAAATCTTATCTCTCTGGAG-CGACAGTA-AGGC
131 AGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTG-CAGTAGA-GC
* * * * *
106139297 AGATTATAACAAACCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTGGAAGTCACAAGTATTATCT
1 AGATCAAAACAAACCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTGGAAGTCACAAGTCTTATCT
* * * *
106139362 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGTGAATCTTATTTCCCTGAAGTTGTAGTGGAAT
66 CCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
* * * * ** *
106139427 AGATTAAAGCTATAAATCACAAACCTTATCTCCCTGAAGCAGCAGTGGAGC
131 AGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
*
106139478 GGATCAAAAC
1 AGATCAAAAC
106139488 TACAAGTCTT
Statistics
Matches: 804, Mismatches: 100, Indels: 28
0.86 0.11 0.03
Matches are distributed among these distances:
180 43 0.05
181 590 0.73
182 8 0.01
183 80 0.10
184 2 0.00
185 46 0.06
186 35 0.04
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (181 bp):
AGATCAAAACAAACCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTGGAAGTCACAAGTCTTATCT
CCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
AGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
Found at i:106139153 original size:92 final size:91
Alignment explanation
Indices: 106139038--106139335 Score: 247
Period size: 92 Copynumber: 3.3 Consensus size: 91
106139028 AATAATGAAT
* *
106139038 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTATCTGAA
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAA
*
106139103 GTTGCAGTAGAGAAAATCAAAACAAAC
66 G-TGCAGTAGAGAAAATAAAAACAAAC
* * * * *
106139130 CTTATCTCCCTGAAGTTTCAGTGGAGCAGGTTGAAG---T-CAT-A-AG-TCTTATCTCCCTGAA
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAA
* *
106139188 GCTGCAGT-G-GAACAGACTAAAGATAGCGAAT
66 G-TGCAGTAGAGAA-A-A-TAAA-A-A-CAAAC
* * * * *
106139219 CTTATTTCCCTGAAGTTGTAGTGGAATAGATTGAAGCTATAAATCACAAATCTTATCTCTCTGGA
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAA
* * * * *
106139284 GCGACAGTA-AGGCAGATTATAACAAAC
66 GTG-CAGTAGA-GAAAATAAAAACAAAC
*
106139311 CTTATCTTCCTGAAGTTGCAGTGGA
1 CTTATCTCCCTGAAGTTGCAGTGGA
106139336 GCAGGTGGAA
Statistics
Matches: 158, Mismatches: 31, Indels: 34
0.71 0.14 0.15
Matches are distributed among these distances:
83 3 0.02
84 2 0.01
85 21 0.13
86 5 0.03
87 2 0.01
88 3 0.02
89 34 0.22
92 58 0.37
93 3 0.02
94 2 0.01
95 4 0.03
96 19 0.12
98 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (91 bp):
CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAA
GTGCAGTAGAGAAAATAAAAACAAAC
Found at i:106139425 original size:543 final size:545
Alignment explanation
Indices: 106138388--106139443 Score: 1580
Period size: 543 Copynumber: 1.9 Consensus size: 545
106138378 AAGATAGCAA
* * *
106138388 AGATCAAAACAAACCTTATCTCCCTAAAGTTGTAGTGGAGTAGGTGGAAGTCACAAGTTTTATCT
1 AGATCAAAACAAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGATGGAAGTCACAAGTCTTATCT
* * * **
106138453 CTCTGAAGTTGCAGTGGAGCAGACTGAATATAGCGAATCTTATTTTTTTCTGAAGTTGCAGTGGA
66 CCCTGAAGTTGCAGTGGAGCAGACTGAAAATAACGAATCTTA-TTTTCCCTGAAGTTGCAGTGGA
* * * * * *
106138518 ACAGATTGAAGTTATAAATCATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCCA
130 ACAGATTGAAGCTATAAATCACAGATCTTATCTATCTGAAGTTGCAGTAGAGAAAATCAAAGACA
* * * * *
106138583 TCAATCTTATCTCCCTGAAGTTGCAATGGAGTAGGTTGAAGTTAAAGTCTTATCTCCTTGAAGTT
195 -CAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTCAAAGTCTTATCTCCCTGAAGCT
* * *
106138648 GCAATGGAGCACACTGAAGATAGCGATTCTTATTACCCTAAAGTTGCAGTGGAACAGACTGAAGC
259 GCAATGGAACACACTAAAGATAGCGAATCTTATTACCCTAAAGTTGCAGTGGAACAGACTGAAGC
* ** *
106138713 TATAAATCACAGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCAAAACAAACCTTATCTCCC
324 TATAAATCACAAATCTTATCTCTCTGAAACGACAGTAGAGCAGATCAAAACAAACCTTATCTCCC
* * *
106138778 TGAAGTTTCAGTGGAGCAGGTTGAAGTCACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
389 TGAAGTTGCAGTGGAGCAGGTGGAAGTCACAAGTATTATCTCCCTGAAGTTGCAGTGGAGCAGAC
* * * *
106138843 TAAATATAGTGAATTTTATTTCCCTGAATTTGCAGTGGAACAGATTGAAGCTATAAATTATAGAT
454 TAAAGATAGTGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTATAGAT
106138908 CTTATCTCTCTGAAGTTGTAGTAGGGC
519 CTTATCTCTCTGAAGTTGTAGTAGGGC
106138935 AGATCAAAACAAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGATGGAAGTCACAAGTCTTATCT
1 AGATCAAAACAAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGATGGAAGTCACAAGTCTTATCT
* *
106139000 CCCTGAAGTTGTAGTGGAGCAGACTGAAAATAATGAATCTTA-TTTCCCTGAAGTTGCAGTGGAA
66 CCCTGAAGTTGCAGTGGAGCAGACTGAAAATAACGAATCTTATTTTCCCTGAAGTTGCAGTGGAA
106139064 CAGATTGAAGCTATAAATCACAGATCTTATCTATCTGAAGTTGCAGTAGAGAAAATCAAA-ACA-
131 CAGATTGAAGCTATAAATCACAGATCTTATCTATCTGAAGTTGCAGTAGAGAAAATCAAAGACAC
* *
106139127 AACCTTATCTCCCTGAAGTTTCAGTGGAGCAGGTTGAAGTCATAAGTCTTATCTCCCTGAAGCTG
196 AACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTCA-AAGTCTTATCTCCCTGAAGCTG
* * * * * * *
106139192 CAGTGGAACAGACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTGAAGCT
260 CAATGGAACACACTAAAGATAGCGAATCTTATTACCCTAAAGTTGCAGTGGAACAGACTGAAGCT
* * * * *
106139257 ATAAATCACAAATCTTATCTCTCTGGAGCGACAGTA-AGGCAGATTATAACAAACCTTATCTTCC
325 ATAAATCACAAATCTTATCTCTCTGAAACGACAGTAGA-GCAGATCAAAACAAACCTTATCTCCC
106139321 TGAAGTTGCAGTGGAGCAGGTGGAAGTCACAAGTATTATCTCCCTGAAGTTGCAGTGGAGCAGAC
389 TGAAGTTGCAGTGGAGCAGGTGGAAGTCACAAGTATTATCTCCCTGAAGTTGCAGTGGAGCAGAC
* * *
106139386 TGAAGATAGTGAATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTAAAGCTATAAAT
454 TAAAGATAGTGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAAT
106139444 CACAAACCTT
Statistics
Matches: 455, Mismatches: 52, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
542 38 0.08
543 241 0.53
544 2 0.00
545 75 0.16
547 99 0.22
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (545 bp):
AGATCAAAACAAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGATGGAAGTCACAAGTCTTATCT
CCCTGAAGTTGCAGTGGAGCAGACTGAAAATAACGAATCTTATTTTCCCTGAAGTTGCAGTGGAA
CAGATTGAAGCTATAAATCACAGATCTTATCTATCTGAAGTTGCAGTAGAGAAAATCAAAGACAC
AACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTCAAAGTCTTATCTCCCTGAAGCTGC
AATGGAACACACTAAAGATAGCGAATCTTATTACCCTAAAGTTGCAGTGGAACAGACTGAAGCTA
TAAATCACAAATCTTATCTCTCTGAAACGACAGTAGAGCAGATCAAAACAAACCTTATCTCCCTG
AAGTTGCAGTGGAGCAGGTGGAAGTCACAAGTATTATCTCCCTGAAGTTGCAGTGGAGCAGACTA
AAGATAGTGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTATAGATCT
TATCTCTCTGAAGTTGTAGTAGGGC
Found at i:106140574 original size:31 final size:31
Alignment explanation
Indices: 106140533--106140679 Score: 224
Period size: 31 Copynumber: 4.7 Consensus size: 31
106140523 CTTGTCACTT
*
106140533 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
106140564 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
* * *
106140595 GTAGCTGGAGCTATCACTTTTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
* *
106140626 GTAGCTGGAGCTACCACTTTTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
106140657 GTAGCCA-AAGCTACCACTTTTCA
1 GTAG-CAGAAGCTACCACTTTTCA
106140680 TTAGTCATTT
Statistics
Matches: 108, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 107 0.99
32 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCAGAAGCTACCACTTTTCACTGATCAG
Found at i:106140759 original size:50 final size:50
Alignment explanation
Indices: 106140657--106140830 Score: 224
Period size: 50 Copynumber: 3.5 Consensus size: 50
106140647 CACTGATCAG
* * * * *
106140657 GTAGCCAAAGCTACCACTTTTCA-TTAGTCATTTGTCATTGATCAGATGAGT
1 GTAGCCGAAGCTATCACTTATCACTT--TCATTTGTCCTTGATCAGATAAGT
*
106140708 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* * * * *
106140758 GTAGTCTAAGCTATTACTTATCACTTTCATTTTTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
106140808 GTAGCCGAAGCTATCACTTATCA
1 GTAGCCGAAGCTATCACTTATCA
106140831 TTTGTTGCCA
Statistics
Matches: 107, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
50 85 0.79
51 20 0.19
52 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:106143048 original size:9 final size:10
Alignment explanation
Indices: 106143018--106143051 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
106143008 CTCCAGCCTA
106143018 AAACCAAACT
1 AAACCAAACT
106143028 AAACCAAACT
1 AAACCAAACT
106143038 AAACC-AACT
1 AAACCAAACT
106143047 AAACC
1 AAACC
106143052 CCAAATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.59, C:0.32, G:0.00, T:0.09
Consensus pattern (10 bp):
AAACCAAACT
Found at i:106146937 original size:32 final size:32
Alignment explanation
Indices: 106146896--106147020 Score: 223
Period size: 32 Copynumber: 3.9 Consensus size: 32
106146886 AATGCTTATC
106146896 ATGCCCATCATCCATTAACTATTAAAATGTTA
1 ATGCCCATCATCCATTAACTATTAAAATGTTA
* *
106146928 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGTTA
106146960 ATGCCCATCATCCATTAACTATTAAAATGTTA
1 ATGCCCATCATCCATTAACTATTAAAATGTTA
*
106146992 ATGCCCATCATTCATTAACTATTAAAATG
1 ATGCCCATCATCCATTAACTATTAAAATG
106147021 CTAAAATGCA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 88 1.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGTTA
Found at i:106146997 original size:64 final size:64
Alignment explanation
Indices: 106146896--106147024 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
106146886 AATGCTTATC
106146896 ATGCCCATCATCCATTAACTATTAAAATGTTAATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGTTAATGCCCATCATTCATTAACTATTAAAATGCTA
106146960 ATGCCCATCATCCATTAACTATTAAAATGTTAATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGTTAATGCCCATCATTCATTAACTATTAAAATGCTA
106147024 A
1 A
106147025 AATGCATACA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (64 bp):
ATGCCCATCATCCATTAACTATTAAAATGTTAATGCCCATCATTCATTAACTATTAAAATGCTA
Found at i:106147346 original size:3 final size:3
Alignment explanation
Indices: 106147338--106147465 Score: 77
Period size: 3 Copynumber: 42.0 Consensus size: 3
106147328 TAACTTAACA
*
106147338 TAT TAT TAT TACT T-T TAT TAT TAT TAT TAT TAT TAT TAC TACT T-T
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* * * *
106147383 TAT CT-T TAT T-T TCTT TAC TAT TAT TTT TAT TAT CAT TATT TATT TATT
1 TAT -TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TA-T TA-T TA-T
* * * *
106147431 TAT TAC TAT TGT TAT TAT TAT TGT CA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
106147466 ATATGTTTTA
Statistics
Matches: 98, Mismatches: 17, Indels: 20
0.73 0.13 0.15
Matches are distributed among these distances:
2 8 0.08
3 73 0.74
4 17 0.17
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:106147372 original size:30 final size:29
Alignment explanation
Indices: 106147338--106147452 Score: 103
Period size: 30 Copynumber: 4.0 Consensus size: 29
106147328 TAACTTAACA
106147338 TATTATTATTACTTTTATTATTATTATTAT
1 TATTATTATTACTTTTATTATTATTATT-T
* *
106147368 TATTATTACTACTTTTATCT-TTATT-TTC
1 TATTATTATTACTTTTAT-TATTATTATTT
* * *
106147396 T-TTACTATTATTTTTATTATCATTA-TT
1 TATTATTATTACTTTTATTATTATTATTT
* *
106147423 TATTTATTTATTACTATTGTTATTATTATT
1 TA-TTA-TTATTACTTTTATTATTATTATT
106147453 GTCATATTAT
Statistics
Matches: 66, Mismatches: 12, Indels: 13
0.73 0.13 0.14
Matches are distributed among these distances:
26 1 0.02
27 19 0.29
28 1 0.02
29 5 0.08
30 38 0.58
31 2 0.03
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.66
Consensus pattern (29 bp):
TATTATTATTACTTTTATTATTATTATTT
Found at i:106148595 original size:26 final size:26
Alignment explanation
Indices: 106148533--106148596 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 26
106148523 AGTTTGGCAA
* *
106148533 TGCTTTTCAAAAGTGCTTTTGAAAAG
1 TGCTTTTGAAAAGTACTTTTGAAAAG
* * * *
106148559 TGATGTGGAAAAGTACTTTTGAGAAG
1 TGCTTTTGAAAAGTACTTTTGAAAAG
106148585 TGCTTTTGAAAA
1 TGCTTTTGAAAA
106148597 TTTTAGTTTA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGCTTTTGAAAAGTACTTTTGAAAAG
Found at i:106149513 original size:86 final size:86
Alignment explanation
Indices: 106149350--106149519 Score: 281
Period size: 86 Copynumber: 2.0 Consensus size: 86
106149340 TATAAAGTAA
* *
106149350 GGTGAATGAAAGTTTGTGAGCAATCAAATGTAAAAAAGTCTTGGTAAAAAATTTTTAGAAAATCA
1 GGTGAATGAAAGTTTGTGAGCAATCAAATATAAAAAAGTCTTAGTAAAAAATTTTTAGAAAATCA
106149415 ATTAATTCTTTAATAAAAAAT
66 ATTAATTCTTTAATAAAAAAT
*
106149436 GGTGAATGATAGTTTGTGAGCAATCAAATATAAAAAAAGTCTTAGTAAAATAA-TTTTAGAAAAT
1 GGTGAATGAAAGTTTGTGAGCAATCAAATAT-AAAAAAGTCTTAGTAAAA-AATTTTTAGAAAAT
106149500 CAATTAATT-TTTAATAAAAA
64 CAATTAATTCTTTAATAAAAA
106149520 TTGCATTCAA
Statistics
Matches: 79, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
86 40 0.51
87 37 0.47
88 2 0.03
ACGTcount: A:0.48, C:0.05, G:0.14, T:0.33
Consensus pattern (86 bp):
GGTGAATGAAAGTTTGTGAGCAATCAAATATAAAAAAGTCTTAGTAAAAAATTTTTAGAAAATCA
ATTAATTCTTTAATAAAAAAT
Found at i:106155173 original size:21 final size:21
Alignment explanation
Indices: 106155147--106155187 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
106155137 AGACGAGCAA
* *
106155147 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
106155168 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
106155188 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:106163079 original size:12 final size:12
Alignment explanation
Indices: 106163025--106163090 Score: 50
Period size: 12 Copynumber: 5.8 Consensus size: 12
106163015 TATTAAATTA
* *
106163025 ATTATTTTTGAT
1 ATTATTATTAAT
*
106163037 A-TATTATTATT
1 ATTATTATTAAT
106163048 ATTA-TATT--T
1 ATTATTATTAAT
* *
106163057 ACTACTATTAAT
1 ATTATTATTAAT
*
106163069 ATTATTATTAAC
1 ATTATTATTAAT
106163081 ATTATTATTA
1 ATTATTATTA
106163091 TCATCGTATA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
9 4 0.09
10 4 0.09
11 12 0.28
12 23 0.53
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.58
Consensus pattern (12 bp):
ATTATTATTAAT
Found at i:106163375 original size:23 final size:22
Alignment explanation
Indices: 106163343--106163391 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
106163333 TCATATGTAT
106163343 ATATTTTATGTACATACTTTTA
1 ATATTTTATGTACATACTTTTA
** *
106163365 ATATTATTATGTATTTATTTTTA
1 ATATT-TTATGTACATACTTTTA
106163388 ATAT
1 ATAT
106163392 ATGTATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (22 bp):
ATATTTTATGTACATACTTTTA
Found at i:106163402 original size:23 final size:23
Alignment explanation
Indices: 106163360--106163405 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
106163350 ATGTACATAC
*
106163360 TTTTAATATTATTATGTATTTAT
1 TTTTAATATTATTATATATTTAT
106163383 TTTTAATA-TATGTATATATTTAT
1 TTTTAATATTAT-TATATATTTAT
106163406 GTAGTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTAATATTATTATATATTTAT
Found at i:106163529 original size:16 final size:16
Alignment explanation
Indices: 106163508--106163541 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
106163498 TGTTATGTAC
106163508 ATATTTTTTAAATATT
1 ATATTTTTTAAATATT
*
106163524 ATATTTTTTATATATT
1 ATATTTTTTAAATATT
106163540 AT
1 AT
106163542 GATGTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATATTTTTTAAATATT
Found at i:106163615 original size:88 final size:89
Alignment explanation
Indices: 106163443--106163622 Score: 201
Period size: 86 Copynumber: 2.1 Consensus size: 89
106163433 TTCTAATATG
* * * *
106163443 TATATATATTATGTAAATATTTTAATACTATATTATGTATATATATATTTATATATGTTATGTAC
1 TATATATATGATGTAAATATTTTAATACTACATTATGTATATATATATTTATATATCTTATGTAA
*
106163508 ATATTTTTTAAATATTATATTTTT
66 ATATTTTCTAAATATTATATTTTT
* *
106163532 TATATATTATGATGTATATATTTTAATA-T-CATTA-GT-TATATATTTTTTATACTATCTTATG
1 TATATA-TATGATGTAAATATTTTAATACTACATTATGTATATATA-TATTTATA-TATCTTATG
* * *
106163593 TAAATA-TTTCT-AATACTATATATTG
63 TAAATATTTTCTAAATATTATATTTTT
106163618 TATAT
1 TATAT
106163623 TTCTAATACC
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
86 22 0.28
87 13 0.17
88 17 0.22
89 7 0.09
90 19 0.24
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (89 bp):
TATATATATGATGTAAATATTTTAATACTACATTATGTATATATATATTTATATATCTTATGTAA
ATATTTTCTAAATATTATATTTTT
Found at i:106163768 original size:25 final size:25
Alignment explanation
Indices: 106163715--106163867 Score: 129
Period size: 25 Copynumber: 6.1 Consensus size: 25
106163705 AATATATATA
* *
106163715 TATATCATGTATATATGATTTT-TTA-
1 TATATTATGTATATAT--TTTTAATAC
*
106163740 TATATTATGTATATATCTTTAATAC
1 TATATTATGTATATATTTTTAATAC
**
106163765 TATATTAT-T-TATATTTTTCTTAC
1 TATATTATGTATATATTTTTAATAC
* *
106163788 -ATATTATCTTATGTATATTTTAATAAC
1 TATATTAT-GTATATAT-TTTTAAT-AC
*
106163815 TATATTATGTATGTATTTTTAACT-C
1 TATATTATGTATATATTTTTAA-TAC
*
106163840 TATATTATGTACATATTTTTAATAC
1 TATATTATGTATATATTTTTAATAC
106163865 TAT
1 TAT
106163868 GTATATACTT
Statistics
Matches: 106, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
22 7 0.07
23 14 0.13
24 5 0.05
25 52 0.49
26 11 0.10
27 10 0.09
28 7 0.07
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.56
Consensus pattern (25 bp):
TATATTATGTATATATTTTTAATAC
Found at i:106165219 original size:20 final size:20
Alignment explanation
Indices: 106165194--106165231 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
106165184 TGGAAAAGTT
106165194 ATATTATCAATTAGAACCAG
1 ATATTATCAATTAGAACCAG
106165214 ATATTATCAATTAGAACC
1 ATATTATCAATTAGAACC
106165232 GGATCAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32
Consensus pattern (20 bp):
ATATTATCAATTAGAACCAG
Found at i:106168966 original size:17 final size:18
Alignment explanation
Indices: 106168944--106168979 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
106168934 GAGACTTTAA
106168944 TGAAAGAGGTGA-AATGT
1 TGAAAGAGGTGATAATGT
*
106168961 TGAAAGTGGTGATAATGT
1 TGAAAGAGGTGATAATGT
106168979 T
1 T
106168980 TCCCTCTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.36, C:0.00, G:0.33, T:0.31
Consensus pattern (18 bp):
TGAAAGAGGTGATAATGT
Found at i:106186909 original size:25 final size:25
Alignment explanation
Indices: 106186845--106186910 Score: 73
Period size: 23 Copynumber: 2.7 Consensus size: 25
106186835 ACTAGAAATG
* *
106186845 TATATTTGAAATGTTCTATAATATA
1 TATATTTGAAATATTTTATAATATA
* *
106186870 TATTTTTTAAA-ATTTTA-AATATA
1 TATATTTGAAATATTTTATAATATA
106186893 TATATTTGAAATTATTTT
1 TATATTTGAAA-TATTTT
106186911 TTAAAATTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 15 0.45
24 4 0.12
25 14 0.42
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (25 bp):
TATATTTGAAATATTTTATAATATA
Found at i:106186924 original size:20 final size:19
Alignment explanation
Indices: 106186896--106186953 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 19
106186886 AAATATATAT
*
106186896 ATTTGAAATTATTTTTTAAA
1 ATTTTAAATTATTTTTT-AA
106186916 ATTTTAAATATTATTTTTTAA
1 ATTTT-AA-ATTATTTTTTAA
*
106186937 ATATTAAATATATTTTT
1 ATTTTAAAT-TATTTTT
106186954 AATAATATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 2 0.06
20 13 0.39
21 8 0.24
22 10 0.30
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
ATTTTAAATTATTTTTTAA
Found at i:106186938 original size:21 final size:21
Alignment explanation
Indices: 106186903--106186994 Score: 96
Period size: 21 Copynumber: 4.2 Consensus size: 21
106186893 TATATTTGAA
*
106186903 ATTATTTTTTAAAATTTTAAAT
1 ATTATTTTTT-AAATATTAAAT
106186925 ATTATTTTTTAAATATTAAAT
1 ATTATTTTTTAAATATTAAAT
* *
106186946 A-TATTTTTAATAATATAAAAT
1 ATTATTTTTTA-AATATTAAAT
*
106186967 ATTTTAATATTTTAAATATTAAAT
1 A--TT-ATTTTTTAAATATTAAAT
106186991 ATTA
1 ATTA
106186995 AATATATTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
20 8 0.14
21 22 0.37
22 12 0.20
24 11 0.19
25 6 0.10
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTATTTTTTAAATATTAAAT
Found at i:106186976 original size:27 final size:28
Alignment explanation
Indices: 106186935--106187025 Score: 109
Period size: 29 Copynumber: 3.4 Consensus size: 28
106186925 ATTATTTTTT
*
106186935 AAATATTAAATATATTTTTAATAATATA
1 AAATATTTAATATATTTTTAATAATATA
* *
106186963 AAATATTTTA-ATA-TTTT-A-AATATT
1 AAATATTTAATATATTTTTAATAATATA
*
106186987 AAATATTAAATATATTTTTTAATAATATA
1 AAATATTTAATATA-TTTTTAATAATATA
106187016 AAATATTTAA
1 AAATATTTAA
106187026 GCGTTTAAAG
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
24 13 0.25
25 4 0.08
26 4 0.08
27 7 0.14
28 9 0.18
29 14 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
AAATATTTAATATATTTTTAATAATATA
Found at i:106187033 original size:52 final size:52
Alignment explanation
Indices: 106186933--106187034 Score: 161
Period size: 52 Copynumber: 2.0 Consensus size: 52
106186923 ATATTATTTT
* *
106186933 TTAAATATTAAATATATTTTTAATAATATAAAATATTTTAATATTTTAAATA
1 TTAAATATTAAATATATTTTTAATAATATAAAATATTTTAAGAGTTTAAATA
*
106186985 TTAAATATTAAATATATTTTTTAATAATATAAAATA-TTTAAGCGTTTAAA
1 TTAAATATTAAATATA-TTTTTAATAATATAAAATATTTTAAGAGTTTAAA
106187035 GTTTAAAAAC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 27 0.59
53 19 0.41
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (52 bp):
TTAAATATTAAATATATTTTTAATAATATAAAATATTTTAAGAGTTTAAATA
Found at i:106187143 original size:38 final size:38
Alignment explanation
Indices: 106187101--106187174 Score: 132
Period size: 38 Copynumber: 1.9 Consensus size: 38
106187091 CTCCTATTGA
106187101 AAAAGGATAG-GAATGATGTAGAATCACAGTTTTATATT
1 AAAAGGATAGAG-ATGATGTAGAATCACAGTTTTATATT
106187139 AAAAGGATAGAGATGATGTAGAATCACAGTTTTATA
1 AAAAGGATAGAGATGATGTAGAATCACAGTTTTATA
106187175 CTATCATTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 34 0.97
39 1 0.03
ACGTcount: A:0.43, C:0.05, G:0.22, T:0.30
Consensus pattern (38 bp):
AAAAGGATAGAGATGATGTAGAATCACAGTTTTATATT
Found at i:106192884 original size:23 final size:22
Alignment explanation
Indices: 106192865--106192927 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
106192855 TAAAAAATGC
106192865 TAATACAATTACATATAAAATTT
1 TAATACAATTACATATAAAA-TT
*
106192888 TAATA-AATATAAAT-TAAAAATT
1 TAATACAAT-TACATAT-AAAATT
106192910 TAAATACAATTACATATA
1 T-AATACAATTACATATA
106192928 TAGGATATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
22 7 0.21
23 22 0.67
24 4 0.12
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (22 bp):
TAATACAATTACATATAAAATT
Found at i:106193419 original size:21 final size:22
Alignment explanation
Indices: 106193393--106193454 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 22
106193383 TCTAAACTCT
106193393 AAACCCTTAACCCTT-AACCCC
1 AAACCCTTAACCCTTAAACCCC
*
106193414 AAACCCTT-ACACCTTAAACTCC
1 AAACCCTTAAC-CCTTAAACCCC
*
106193436 -AACCC-TAACCCCTAAACCC
1 AAACCCTTAACCCTTAAACCC
106193455 TAAATTATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
20 11 0.31
21 19 0.54
22 5 0.14
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.18
Consensus pattern (22 bp):
AAACCCTTAACCCTTAAACCCC
Found at i:106193544 original size:21 final size:21
Alignment explanation
Indices: 106193518--106193602 Score: 73
Period size: 21 Copynumber: 3.9 Consensus size: 21
106193508 ACTCCTAAAC
*
106193518 CTTAAACCCTAAATCATATAT
1 CTTAAACCATAAATCATATAT
* *
106193539 CTTAAACCATAGTTAACTCAAAAAT
1 CTTAAACCATA---AA-TCATATAT
*
106193564 CTTAAACCCTAAA-CTATATAT
1 CTTAAACCATAAATC-ATATAT
*
106193585 CTTAAACCATAAACCATA
1 CTTAAACCATAAATCATA
106193603 AACTATAATG
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
20 1 0.02
21 29 0.57
22 3 0.06
24 2 0.04
25 16 0.31
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (21 bp):
CTTAAACCATAAATCATATAT
Found at i:106193555 original size:46 final size:46
Alignment explanation
Indices: 106193502--106193595 Score: 145
Period size: 46 Copynumber: 2.0 Consensus size: 46
106193492 CTTCAAATAC
**
106193502 TAGTTAACTCCTAAACCTTAAACCCTAAA-TCATATATCTTAAACCA
1 TAGTTAACTCAAAAACCTTAAACCCTAAACT-ATATATCTTAAACCA
*
106193548 TAGTTAACTCAAAAATCTTAAACCCTAAACTATATATCTTAAACCA
1 TAGTTAACTCAAAAACCTTAAACCCTAAACTATATATCTTAAACCA
106193594 TA
1 TA
106193596 AACCATAAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 43 0.98
47 1 0.02
ACGTcount: A:0.44, C:0.23, G:0.02, T:0.31
Consensus pattern (46 bp):
TAGTTAACTCAAAAACCTTAAACCCTAAACTATATATCTTAAACCA
Found at i:106193824 original size:41 final size:40
Alignment explanation
Indices: 106193767--106193934 Score: 169
Period size: 41 Copynumber: 4.1 Consensus size: 40
106193757 GTTATATGAC
*
106193767 TTTTAGCGGCGTTTTGCCAAAAGCGTCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCT-GT
*
106193808 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATTCTCTGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGT
* * * * *
106193848 TTTTTGCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTTTGT
1 TTTTAGCGGCG--TTTTGCCAAAAGCGCCGCTAATGCTCTGT
* ** * *
106193889 TTTTAGTGGCGTTTTTGGTAAAA-CGCCGCTATTGCTATGT
1 TTTTAGCGGCG-TTTTGCCAAAAGCGCCGCTAATGCTCTGT
106193929 GTTTTA
1 -TTTTA
106193935 CAATTTTTGC
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
40 38 0.34
41 64 0.58
42 9 0.08
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGT
Found at i:106197215 original size:16 final size:17
Alignment explanation
Indices: 106197165--106197215 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
106197155 ATGGAAATAT
*
106197165 AATCTTTAAGGATATGC
1 AATCTTGAAGGATATGC
*
106197182 AATCTTAGATATGATATGC
1 AATCTT-GA-AGGATATGC
106197201 AATCTTGAA-GATATG
1 AATCTTGAAGGATATG
106197216 ATCTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 14 0.47
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
AATCTTGAAGGATATGC
Found at i:106197234 original size:22 final size:21
Alignment explanation
Indices: 106197175--106197217 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
106197165 AATCTTTAAG
106197175 GATATGCAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
106197194 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGAAGATAT
106197215 GAT
1 GAT
106197218 CTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
21 9 0.41
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (21 bp):
GATATGCAATCTTGAAGATAT
Found at i:106198277 original size:92 final size:92
Alignment explanation
Indices: 106198155--106198352 Score: 306
Period size: 92 Copynumber: 2.2 Consensus size: 92
106198145 ACTCTTTGTA
* *
106198155 TAAGGGTTGGGAGATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTTATGTAGTCCTAA
1 TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTTATGTAGTCCTAA
* *
106198220 GACGACACTTTTGTGGTGACATTTTCC
66 GACGACACTTTTGTGGCGACACTTTCC
* * * * *
106198247 TAAGGGTTGGTATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTTGTCCTAA
1 TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTTATGTAGTCCTAA
106198312 GACGACACTTTTGTGGCGACACTTTCC
66 GACGACACTTTTGTGGCGACACTTTCC
*
106198339 TAAGTGTTGGTATA
1 TAAGGGTTGGTATA
106198353 AACTATGCTT
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 96 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (92 bp):
TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTTATGTAGTCCTAA
GACGACACTTTTGTGGCGACACTTTCC
Found at i:106198598 original size:132 final size:132
Alignment explanation
Indices: 106198247--106198615 Score: 641
Period size: 131 Copynumber: 2.8 Consensus size: 132
106198237 GACATTTTCC
* * *
106198247 TAAGGGTTGGTATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTTGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
* *
106198312 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGTATAAACTATGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGCCAACTCTTTG
106198377 TA
131 TA
*
106198379 TAAGGGTT-GGATATGTATGCCTAAGGCAACGCTTGAATAAGAATTGGCTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
*
106198443 GACGACACTTTTGTGGCGACACTTTTCTAAGTGTTGGGATAAACTACGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGCCAACTCTTTG
106198508 TA
131 TA
*
106198510 TAAGGGTTGGGATATGTATGCCTAAGACAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
* *
106198575 GACGACAGTTTTGGGGCGACACTTTCCTAAGTGTTGGGATA
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATA
106198616 CACTTGTCAG
Statistics
Matches: 224, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
131 124 0.55
132 100 0.45
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (132 bp):
TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGCCAACTCTTTG
TA
Found at i:106198951 original size:15 final size:16
Alignment explanation
Indices: 106198933--106198970 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
106198923 GGGTTTTGTA
106198933 TTTATGAGTTT-GGGG
1 TTTATGAGTTTAGGGG
* *
106198948 TTTATGATTTTAGGGT
1 TTTATGAGTTTAGGGG
106198964 TTTATGA
1 TTTATGA
106198971 TTATGGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.53
Consensus pattern (16 bp):
TTTATGAGTTTAGGGG
Found at i:106198951 original size:37 final size:37
Alignment explanation
Indices: 106198910--106198987 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
106198900 AGGTTATATA
* *
106198910 GTTTAAGGTTTTAGGGTTTTGT-ATTTAT-GAGTTTGGG
1 GTTTAAGATTTTAGGGTTTTATGA-TTATGGA-TTTGGG
*
106198947 GTTTATGATTTTAGGGTTTTATGATTATGGATTTGGG
1 GTTTAAGATTTTAGGGTTTTATGATTATGGATTTGGG
106198984 GTTT
1 GTTT
106198988 TGTGATTATG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 33 0.92
38 3 0.08
ACGTcount: A:0.17, C:0.00, G:0.31, T:0.53
Consensus pattern (37 bp):
GTTTAAGATTTTAGGGTTTTATGATTATGGATTTGGG
Found at i:106198969 original size:16 final size:15
Alignment explanation
Indices: 106198933--106198972 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
106198923 GGGTTTTGTA
*
106198933 TTTATGAGTTTGGGG
1 TTTATGATTTTGGGG
*
106198948 TTTATGATTTTAGGGT
1 TTTATGATTTT-GGGG
106198964 TTTATGATT
1 TTTATGATT
106198973 ATGGATTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.55
Consensus pattern (15 bp):
TTTATGATTTTGGGG
Found at i:106198974 original size:22 final size:21
Alignment explanation
Indices: 106198949--106198997 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
106198939 AGTTTGGGGT
106198949 TTATGATTTTAGGGTTTTATGA
1 TTATGA-TTTAGGGTTTTATGA
* *
106198971 TTATGGATTTGGGGTTTTGTGA
1 TTAT-GATTTAGGGTTTTATGA
106198993 TTATG
1 TTATG
106198998 GGTTTGTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 21 0.88
23 2 0.08
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.53
Consensus pattern (21 bp):
TTATGATTTAGGGTTTTATGA
Found at i:106198998 original size:22 final size:22
Alignment explanation
Indices: 106198960--106199003 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
106198950 TATGATTTTA
106198960 GGGTTTTATGATTATGGATTTG
1 GGGTTTTATGATTATGGATTTG
* *
106198982 GGGTTTTGTGATTATGGGTTTG
1 GGGTTTTATGATTATGGATTTG
106199004 TGATTAATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (22 bp):
GGGTTTTATGATTATGGATTTG
Found at i:106199685 original size:47 final size:47
Alignment explanation
Indices: 106199617--106199883 Score: 462
Period size: 47 Copynumber: 5.7 Consensus size: 47
106199607 TTAAGAATGT
*
106199617 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATT
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
106199664 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
*
106199711 ATGCATACTTTACTCGGATAAAGTATGTATTAGCAGATTCACTAATA
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
* * *
106199758 ATGCATACTTTACTCGAATAAAGTATGTCTTAGCAGATTCACTAATA
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
*
106199805 ATGCATATTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
* *
106199852 ATGCATACTTTACCCGGGTAAAGTATGCATTA
1 ATGCATACTTTACCCGGATAAAGTATGTATTA
106199884 TTTATTTGAT
Statistics
Matches: 209, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 209 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.33
Consensus pattern (47 bp):
ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
Found at i:106202880 original size:37 final size:36
Alignment explanation
Indices: 106202828--106203019 Score: 221
Period size: 36 Copynumber: 5.3 Consensus size: 36
106202818 TTAAATAATA
* * *
106202828 TCTATTCCAA-CTTTTTTAAGGTTGCTTTACACAGG
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAGACAGG
* *
106202863 TCTATCCCAACCTTTTTTAAAAGTTACCTTAGACATGG
1 TCTATCCCAACCTTTTTT-AAGGTTGCCTTAGACA-GG
106202901 TCTATCCCAACC-TTTTTAAGGTTGCCTTAGAC-GAG
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAGACAG-G
* *
106202936 TCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACATGG
1 TCTATCCCAACCTTTTTT-AAGGTTGCCTTAGACA-GG
* * *
106202974 TTTATCCTAACC-TGTTTAAGGTTGCCTTAGACAGG
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAGACAGG
106203009 TCTATCCCAAC
1 TCTATCCCAAC
106203020 ACCACAGGAA
Statistics
Matches: 133, Mismatches: 16, Indels: 16
0.81 0.10 0.10
Matches are distributed among these distances:
34 1 0.01
35 31 0.23
36 41 0.31
37 36 0.27
38 23 0.17
39 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (36 bp):
TCTATCCCAACCTTTTTTAAGGTTGCCTTAGACAGG
Found at i:106202911 original size:73 final size:73
Alignment explanation
Indices: 106202828--106203019 Score: 269
Period size: 73 Copynumber: 2.6 Consensus size: 73
106202818 TTAAATAATA
* * * *
106202828 TCTATTCCAACTTTTTTAAGGTTGCTTTACACAGGTCTATCCCAACCTTTTTTAAAAGTTACCTT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAAGTTACCTT
106202893 AGACATGG
66 AGACATGG
* * * *
106202901 TCTATCCCAACCTTTTTAAGGTTGCCTTAGAC-GAGTCTATTCCGACCTTTTTTAAAGGTTGCCT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAG-GTCTATCCCAACCTTTTTTAAAAGTTACCT
106202965 TAGACATGG
65 TAGACATGG
* * *
106202974 TTTATCCTAACCTGTTTAAGGTTGCCTTAGACAGGTCTATCCCAAC
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAAC
106203020 ACCACAGGAA
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
72 1 0.01
73 102 0.98
74 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (73 bp):
TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAAGTTACCTT
AGACATGG
Found at i:106203055 original size:12 final size:12
Alignment explanation
Indices: 106203038--106203063 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
106203028 AAAATAGGGC
106203038 TTTAGCGGCGTT
1 TTTAGCGGCGTT
106203050 TTTAGCGGCGTT
1 TTTAGCGGCGTT
106203062 TT
1 TT
106203064 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:106203147 original size:41 final size:40
Alignment explanation
Indices: 106203087--106203255 Score: 221
Period size: 41 Copynumber: 4.1 Consensus size: 40
106203077 GCAAAAATTA
* * *
106203087 TAAAACACAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGC
1 TAAAA-ACAGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGC
* *
106203129 TAAAAACAGAGCATTAGCGGCGTTTTTTGTTAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGC
*
106203170 TAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* * *
106203210 TAAAGACCAAAGCATTAGCGGCGCTTTTGGTAAAACGCCAC
1 TAAA-AACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
106203251 TAAAA
1 TAAAA
106203256 GTCATGTAAC
Statistics
Matches: 120, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
40 21 0.17
41 94 0.78
42 5 0.04
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (40 bp):
TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:106203244 original size:81 final size:83
Alignment explanation
Indices: 106203087--106203255 Score: 236
Period size: 81 Copynumber: 2.1 Consensus size: 83
106203077 GCAAAAATTA
* * *
106203087 TAAAACACAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAAAACAGAGCATTAGCGGCGT
1 TAAAACACAGAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAAAACAAAGCATTAGCGGCGT
* * *
106203152 TTTTTGTTAAAACGCCGC
66 CTTTTGGTAAAACGCCAC
* *
106203170 TAAAAC-CAGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGCTAAAGACCAAAGCATTAGCGGCG
1 TAAAACACAGAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAA-AACAAAGCATTAGCGGCG
106203233 -CTTTTGGTAAAACGCCAC
65 TCTTTTGGTAAAACGCCAC
106203251 TAAAA
1 TAAAA
106203256 GTCATGTAAC
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
81 40 0.52
82 31 0.40
83 6 0.08
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (83 bp):
TAAAACACAGAGCAATAGCGGCGTCTTTTGGTAAAACGCCGCTAAAAACAAAGCATTAGCGGCGT
CTTTTGGTAAAACGCCAC
Found at i:106204068 original size:14 final size:14
Alignment explanation
Indices: 106204029--106204111 Score: 69
Period size: 14 Copynumber: 5.8 Consensus size: 14
106204019 AACTAACCTC
106204029 TAAACCCATAAACTA
1 TAAACCC-TAAACTA
* * * *
106204044 TAGATCGTAAATTA
1 TAAACCCTAAACTA
106204058 TAAACCCTAAACTA
1 TAAACCCTAAACTA
*
106204072 TAAACCATAAA-TCA
1 TAAACCCTAAACT-A
* *
106204086 TAAACTCTTAAACTG
1 TAAAC-CCTAAACTA
106204101 TAAACCCTAAA
1 TAAACCCTAAA
106204112 ATCTAAAAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
13 1 0.02
14 37 0.70
15 14 0.26
16 1 0.02
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.25
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:106204105 original size:29 final size:28
Alignment explanation
Indices: 106204029--106204111 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 28
106204019 AACTAACCTC
* * * *
106204029 TAAACCCATAAACTATAGATCGTAAATTA
1 TAAACCC-TAAACTATAAACCATAAATCA
106204058 TAAACCCTAAACTATAAACCATAAATCA
1 TAAACCCTAAACTATAAACCATAAATCA
* * *
106204086 TAAACTCTTAAACTGTAAACCCTAAA
1 TAAAC-CCTAAACTATAAACCATAAA
106204112 ATCTAAAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
28 22 0.48
29 24 0.52
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.25
Consensus pattern (28 bp):
TAAACCCTAAACTATAAACCATAAATCA
Found at i:106204625 original size:7 final size:7
Alignment explanation
Indices: 106204610--106204675 Score: 60
Period size: 7 Copynumber: 9.0 Consensus size: 7
106204600 AAATATTCAA
106204610 AAAAATT
1 AAAAATT
*
106204617 AAAATTT
1 AAAAATT
*
106204624 AAAAATAA
1 AAAAAT-T
*
106204632 AAAAATA
1 AAAAATT
*
106204639 AAAAATA
1 AAAAATT
106204646 AAAAATTT
1 AAAAA-TT
*
106204654 AAAAATA
1 AAAAATT
106204661 AAAAACTT
1 AAAAA-TT
106204669 AAAAATT
1 AAAAATT
106204676 TAATATTTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
7 32 0.64
8 18 0.36
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAAATT
Found at i:106204628 original size:8 final size:8
Alignment explanation
Indices: 106204583--106204678 Score: 56
Period size: 8 Copynumber: 11.9 Consensus size: 8
106204573 TTTATATGTT
106204583 AATTTAAA
1 AATTTAAA
106204591 AATTATAAAA
1 AATT-T-AAA
106204601 AATATTCAAAA
1 AAT-TT--AAA
*
106204612 AAATT-AA
1 AATTTAAA
106204619 AATTTAAA
1 AATTTAAA
106204627 AA--TAAA
1 AATTTAAA
**
106204633 AAAATAAA
1 AATTTAAA
* *
106204641 AAATAAAA
1 AATTTAAA
106204649 AATTTAAA
1 AATTTAAA
*
106204657 AA-TAAAA
1 AATTTAAA
*
106204664 AACTTAAA
1 AATTTAAA
106204672 AATTTAA
1 AATTTAA
106204679 TATTTAATAT
Statistics
Matches: 71, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
6 6 0.08
7 12 0.17
8 36 0.51
9 1 0.01
10 9 0.13
11 7 0.10
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (8 bp):
AATTTAAA
Found at i:106204633 original size:22 final size:22
Alignment explanation
Indices: 106204608--106204674 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
106204598 AAAAATATTC
* *
106204608 AAAAAAATTAAAATTTAAAAAT
1 AAAAAAATAAAAAATTAAAAAT
*
106204630 AAAAAAATAAAAAATAAAAAAT
1 AAAAAAATAAAAAATTAAAAAT
**
106204652 TTAAAAATAAAAAACTTAAAAAT
1 AAAAAAATAAAAAA-TTAAAAAT
106204675 TTAATATTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
22 31 0.82
23 7 0.18
ACGTcount: A:0.76, C:0.01, G:0.00, T:0.22
Consensus pattern (22 bp):
AAAAAAATAAAAAATTAAAAAT
Found at i:106204635 original size:15 final size:15
Alignment explanation
Indices: 106204595--106204674 Score: 90
Period size: 15 Copynumber: 5.1 Consensus size: 15
106204585 TTTAAAAATT
106204595 ATAAAAAATATTCAAAA
1 ATAAAAAAT-TT-AAAA
106204612 A-AATTAAAATTTAAAA
1 ATAA--AAAATTTAAAA
* *
106204628 ATAAAAAAATAAAAA
1 ATAAAAAATTTAAAA
106204643 ATAAAAAATTTAAAA
1 ATAAAAAATTTAAAA
*
106204658 ATAAAAAACTTAAAA
1 ATAAAAAATTTAAAA
106204673 AT
1 AT
106204675 TTAATATTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
15 38 0.69
16 7 0.13
17 5 0.09
18 5 0.09
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (15 bp):
ATAAAAAATTTAAAA
Found at i:106204684 original size:30 final size:30
Alignment explanation
Indices: 106204608--106204685 Score: 102
Period size: 30 Copynumber: 2.6 Consensus size: 30
106204598 AAAAATATTC
*
106204608 AAAAAAATTAAAATTTAAAAATAAAAAAAT
1 AAAAAATTTAAAATTTAAAAATAAAAAAAT
** *
106204638 AAAAAATAAAAAATTTAAAAATAAAAAACT
1 AAAAAATTTAAAATTTAAAAATAAAAAAAT
* *
106204668 TAAAAATTTAATATTTAA
1 AAAAAATTTAAAATTTAA
106204686 TATTTTAATC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.72, C:0.01, G:0.00, T:0.27
Consensus pattern (30 bp):
AAAAAATTTAAAATTTAAAAATAAAAAAAT
Found at i:106206638 original size:16 final size:15
Alignment explanation
Indices: 106206601--106206641 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
106206591 CTCTTGTGCC
106206601 AAAAA-AAA-AAA-G
1 AAAAAGAAAGAAAGG
106206613 AAAAAGAAAGAAAGG
1 AAAAAGAAAGAAAGG
106206628 AAAACAGAAAGAAA
1 AAAA-AGAAAGAAA
106206642 ATCTCATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.20
13 3 0.12
14 3 0.12
15 5 0.20
16 9 0.36
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGAAAGG
Found at i:106209307 original size:19 final size:21
Alignment explanation
Indices: 106209279--106209326 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
106209269 TTATTATTTA
106209279 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
106209299 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
106209319 TTTTAGTT
1 TTTTAGTT
106209327 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:106209804 original size:38 final size:36
Alignment explanation
Indices: 106209740--106209827 Score: 108
Period size: 38 Copynumber: 2.4 Consensus size: 36
106209730 AACTATATCG
*
106209740 ACCTTTTT-AAGGTTGTCTTAGATAGGTTTATCACA
1 ACCTTTTTAAAGGTTGTCTTAGATAGGTCTATCACA
*
106209775 ACCTTTTTCAAAGGTTGGTCTTA-ACTAGGTCTATCCCA
1 ACCTTTTT-AAAGGTT-GTCTTAGA-TAGGTCTATCACA
106209813 ACCCTTTTTAAAGGT
1 A-CCTTTTTAAAGGT
106209828 CGGCATTGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
35 8 0.17
37 7 0.15
38 24 0.52
39 7 0.15
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (36 bp):
ACCTTTTTAAAGGTTGTCTTAGATAGGTCTATCACA
Found at i:106211225 original size:142 final size:143
Alignment explanation
Indices: 106210967--106211401 Score: 755
Period size: 142 Copynumber: 3.0 Consensus size: 143
106210957 TTACGTTCTC
*
106210967 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAGAAAAAAAAAATCATAGTATGGTGGAA
1 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAG-AAAAAAAAATCATAGTATGGTAGAA
*
106211032 TGACTTAGTTGTGAAAAAAAAATATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACTAA
65 TGACTCAGTTGTGAAAAAAAAATATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACTAA
106211097 AGCAGGCCTATGGA
130 AGCAGGCCTATGGA
* *
106211111 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAG-AAAAAAAATCCTAGTATGGTAGAGT
1 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAGAAAAAAAAATCATAGTATGGTAGAAT
*
106211175 GACTCAGTTGTGAAAAAAAAATATTGACCATAAAAACCAACCCCAAATAGACGTCTTTAACTAAA
66 GACTCAGTTGTGAAAAAAAAATATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACTAAA
106211240 GCAGGCCTATGGA
131 GCAGGCCTATGGA
*
106211253 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAGAAAAAAAAATCATAGTATGGTTGAAT
1 AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAGAAAAAAAAATCATAGTATGGTAGAAT
* *
106211318 AAGTCAGTTGTGAAAAAAAAAATTATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACTA
66 GACTCAGTTGTG-AAAAAAAAA-TATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACTA
*
106211383 AAGCAGGCCTCTGGA
129 AAGCAGGCCTATGGA
106211398 AATC
1 AATC
106211402 ATAGCCACAT
Statistics
Matches: 276, Mismatches: 12, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
142 137 0.50
143 32 0.12
144 48 0.17
145 59 0.21
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (143 bp):
AATCCTGATGTTGATTGATGTCAGTTGTCGAGCATTGAGAAAAAAAAATCATAGTATGGTAGAAT
GACTCAGTTGTGAAAAAAAAATATTGACCATAAAAACCAACCCCAAATAGACGCCTTTAACTAAA
GCAGGCCTATGGA
Found at i:106212070 original size:83 final size:84
Alignment explanation
Indices: 106211983--106212185 Score: 205
Period size: 84 Copynumber: 2.4 Consensus size: 84
106211973 AAACAGCAAA
* * * * *
106211983 AATAAATCCCGAAACA-AAATTATTTGATT-ACGTCTT-TATTTGGAAACAAAACAACATCGAAG
1 AATAAATCCCGAAACAGAAATTATTTAATTCA-AT-TTGAATTTGGAAACAAAACAAAATCAAAG
*
106212045 AAAATCTTGTTAAACGGCGGG
64 AAAATCTTGTTAAACAGCGGG
* * ** * *
106212066 AATAAATCCTGAAATAGATTTTATTTAATTCAATTTGAATTTGGAAACAAAATAAAATCAAATAA
1 AATAAATCCCGAAACAGAAATTATTTAATTCAATTTGAATTTGGAAACAAAACAAAATCAAAGAA
*
106212131 AATCTTGTTAAACAGTGGG
66 AATCTTGTTAAACAGCGGG
* * ** *
106212150 AGTAAATCCCAAAACAGATTTTATTTAATTTAATTT
1 AATAAATCCCGAAACAGAAATTATTTAATTCAATTT
106212186 CTCGTTTTTG
Statistics
Matches: 99, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
83 16 0.16
84 82 0.83
85 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (84 bp):
AATAAATCCCGAAACAGAAATTATTTAATTCAATTTGAATTTGGAAACAAAACAAAATCAAAGAA
AATCTTGTTAAACAGCGGG
Found at i:106212108 original size:84 final size:84
Alignment explanation
Indices: 106212020--106212185 Score: 233
Period size: 84 Copynumber: 2.0 Consensus size: 84
106212010 TTACGTCTTT
* * * ** *
106212020 ATTTGGAAACAAAACAACATCGAAGAAAATCTTGTTAAACGGCGGGAATAAATCCTGAAATAGAT
1 ATTTGGAAACAAAACAAAATCAAAGAAAATCTTGTTAAACAGCGGGAATAAATCCCAAAACAGAT
106212085 TTTATTTAATTCAATTTGA
66 TTTATTTAATTCAATTTGA
* * * *
106212104 ATTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACAGTGGGAGTAAATCCCAAAACAGAT
1 ATTTGGAAACAAAACAAAATCAAAGAAAATCTTGTTAAACAGCGGGAATAAATCCCAAAACAGAT
*
106212169 TTTATTTAATTTAATTT
66 TTTATTTAATTCAATTT
106212186 CTCGTTTTTG
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
84 71 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.31
Consensus pattern (84 bp):
ATTTGGAAACAAAACAAAATCAAAGAAAATCTTGTTAAACAGCGGGAATAAATCCCAAAACAGAT
TTTATTTAATTCAATTTGA
Found at i:106216856 original size:21 final size:21
Alignment explanation
Indices: 106216830--106216869 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
106216820 TTTAAAATTT
106216830 TAATTTATATTTACTTTTTTA
1 TAATTTATATTTACTTTTTTA
106216851 TAATTTATATTTACTTTTT
1 TAATTTATATTTACTTTTT
106216870 CTCATCAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.68
Consensus pattern (21 bp):
TAATTTATATTTACTTTTTTA
Found at i:106216857 original size:26 final size:27
Alignment explanation
Indices: 106216807--106216863 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
106216797 TAAAAATATT
106216807 TTTATATTTAGTTTTTAAAATTTTA-A
1 TTTATATTTAGTTTTTAAAATTTTATA
* *
106216833 TTTATATTTACTTTTTTATAA-TTTATA
1 TTTATATTTA-GTTTTTAAAATTTTATA
106216860 TTTA
1 TTTA
106216864 CTTTTTCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTATATTTAGTTTTTAAAATTTTATA
Found at i:106218857 original size:37 final size:36
Alignment explanation
Indices: 106218816--106218943 Score: 103
Period size: 37 Copynumber: 3.3 Consensus size: 36
106218806 AATGGCGGCT
106218816 AAAGCCTCATCGGCTTAGCCGAAGTAAAATGGCTACC
1 AAAGCCTCATCGG-TTAGCCGAAGTAAAATGGCTACC
* * * * * *
106218853 AAAGCCTCATTGGATAGTTCGAAGTACATCTATGACACACC
1 AAAGCCTCATCGGTTAG-CCGAAGTA-A--AATGGC-TACC
* * *
106218894 AAGTGTCTCATCGGTTGAGCCGAAGCAAAATGGCTACC
1 AA-AGCCTCATCGGTT-AGCCGAAGTAAAATGGCTACC
106218932 AAAGCCTCATCG
1 AAAGCCTCATCG
106218944 AAACTATCCG
Statistics
Matches: 67, Mismatches: 17, Indels: 14
0.68 0.17 0.14
Matches are distributed among these distances:
36 3 0.04
37 27 0.40
38 6 0.09
39 4 0.06
40 4 0.06
41 6 0.09
42 15 0.22
43 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (36 bp):
AAAGCCTCATCGGTTAGCCGAAGTAAAATGGCTACC
Found at i:106220521 original size:29 final size:30
Alignment explanation
Indices: 106220489--106220545 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
106220479 TTATTTAATA
106220489 ACTCG-ATTTACTAAGACGGAGGCCCTACG
1 ACTCGTATTTACTAAGACGGAGGCCCTACG
* *
106220518 ACTCGTTTTTCCTAAGACGGAGGCCCTA
1 ACTCGTATTTACTAAGACGGAGGCCCTA
106220546 TACTCACTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (30 bp):
ACTCGTATTTACTAAGACGGAGGCCCTACG
Found at i:106220550 original size:29 final size:30
Alignment explanation
Indices: 106220499--106220559 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
106220489 ACTCGATTTA
**
106220499 CTAAGACGGAGGCCCTACGACTCGTTTTTC
1 CTAAGACGGAGGCCCTACGACTCACTTTTC
*
106220529 CTAAGACGGAGGCCCTA-TACTCACTTTTC
1 CTAAGACGGAGGCCCTACGACTCACTTTTC
106220558 CT
1 CT
106220560 TTTCGGTGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (30 bp):
CTAAGACGGAGGCCCTACGACTCACTTTTC
Found at i:106226697 original size:78 final size:78
Alignment explanation
Indices: 106226543--106226707 Score: 199
Period size: 78 Copynumber: 2.1 Consensus size: 78
106226533 GGCGGCCAAC
* * * * * *
106226543 GCCTCATCGGCTTAGCCAAAGTAAAGTGGCTACCAAAGCCTCATCGGATAGTTCGAAGTACATCT
1 GCCTCATCGGCTGAGCCAAAGCAAAGT-GCTACCAAAGCCTCATCGGAAACTTCGAAGCAAATCT
106226608 ATGACACACCAAGT
65 ATGACACACCAAGT
* * *
106226622 GTCTCATCGGCTGAGCCGAAGCAAAGT-CTACCAAAGCCTCAT-TGAAACTATCTGAAGCAAATC
1 GCCTCATCGGCTGAGCCAAAGCAAAGTGCTACCAAAGCCTCATCGGAAACT-TC-GAAGCAAATC
*
106226685 TATGGCACACCAAGT
64 TATGACACACCAAGT
106226700 GCCTCATC
1 GCCTCATC
106226708 AACTCGAGGT
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
76 4 0.05
77 17 0.23
78 29 0.40
79 23 0.32
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (78 bp):
GCCTCATCGGCTGAGCCAAAGCAAAGTGCTACCAAAGCCTCATCGGAAACTTCGAAGCAAATCTA
TGACACACCAAGT
Found at i:106226870 original size:28 final size:29
Alignment explanation
Indices: 106226822--106226880 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
106226812 CACTTCCACT
*
106226822 TTCAATTGATCATAATCATTCGAAT-TCAA
1 TTCAATTGATCATAAGCATTC-AATCTCAA
106226851 TTCAATT-ATCAT-AGCAATTCAATCTCAA
1 TTCAATTGATCATAAGC-ATTCAATCTCAA
106226879 TT
1 TT
106226881 TGCTTCAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 5 0.19
28 15 0.56
29 7 0.26
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.39
Consensus pattern (29 bp):
TTCAATTGATCATAAGCATTCAATCTCAA
Found at i:106227739 original size:20 final size:18
Alignment explanation
Indices: 106227716--106227758 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 18
106227706 TTTTCTTTTC
*
106227716 TTTATTTCTTTTTACTTTAT
1 TTTATTTC-ATTTAC-TTAT
106227736 TTTAATTTCATTTACTTAT
1 TTT-ATTTCATTTACTTAT
106227755 TTTA
1 TTTA
106227759 ATTTATTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 1 0.05
19 7 0.33
20 8 0.38
21 5 0.24
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTATTTCATTTACTTAT
Found at i:106228244 original size:30 final size:29
Alignment explanation
Indices: 106228210--106228270 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 29
106228200 ACTCGATTTA
* * *
106228210 CTAAGACGGAGGCCCTACGACTCATTTTTC
1 CTAAGACAGAGGCCCTA-AACTCACTTTTC
106228240 CTAAGACAGAGGCCCTAAACTCACTTTTC
1 CTAAGACAGAGGCCCTAAACTCACTTTTC
106228269 CT
1 CT
106228271 TTCCGGTGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
CTAAGACAGAGGCCCTAAACTCACTTTTC
Found at i:106229459 original size:27 final size:27
Alignment explanation
Indices: 106229428--106229480 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
106229418 ACTTAACAAT
*
106229428 CAAAT-CCTTCTAAAATAATAATAAAAA
1 CAAATGCCTT-TAAAATAATAACAAAAA
*
106229455 CAAATGTCTTTAAAATAATAACAAAA
1 CAAATGCCTTTAAAATAATAACAAAA
106229481 TTAACAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.26
Consensus pattern (27 bp):
CAAATGCCTTTAAAATAATAACAAAAA
Found at i:106229542 original size:11 final size:11
Alignment explanation
Indices: 106229524--106229563 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
106229514 ATAATAACAA
106229524 CAAAATAATAG
1 CAAAATAATAG
*
106229535 CAATATAATAG
1 CAAAATAATAG
* *
106229546 TAAAATGATAG
1 CAAAATAATAG
106229557 CAAAATA
1 CAAAATA
106229564 GGGAGAAAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.60, C:0.07, G:0.10, T:0.23
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:106242014 original size:21 final size:20
Alignment explanation
Indices: 106241988--106242053 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 20
106241978 ATTTAAAAAT
106241988 ATTTTTATATTTACT-TTTAAA
1 ATTTTTATATTTA-TATTT-AA
106242009 ATTTTTA-ATTTATATTTAA
1 ATTTTTATATTTATATTTAA
* *
106242028 CTTTTTATAATTTATATTTAC
1 ATTTTTAT-ATTTATATTTAA
106242049 ATTTT
1 ATTTT
106242054 CTCATCAATG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
19 9 0.23
20 8 0.21
21 22 0.56
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTTTATATTTATATTTAA
Found at i:106251894 original size:22 final size:22
Alignment explanation
Indices: 106251842--106251896 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
106251832 AAACAGTAAA
*
106251842 AGAAATATATTAACAAATAATAT
1 AGAAATATA-TAACAAATAACAT
**
106251865 A-AATATATATATGAAATAACAT
1 AGAA-ATATATAACAAATAACAT
106251887 AGAAATATAT
1 AGAAATATAT
106251897 GAATAGTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 19 0.70
23 8 0.30
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (22 bp):
AGAAATATATAACAAATAACAT
Found at i:106252194 original size:25 final size:24
Alignment explanation
Indices: 106252148--106252203 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
106252138 AATATAACTA
* * *
106252148 ATAATATTGAAAATATATATATAT
1 ATAATATTGAAAACACACATATAT
*
106252172 CATAATATTTAAAACACACATATAT
1 -ATAATATTGAAAACACACATATAT
106252197 AT-ATATT
1 ATAATATT
106252204 ATATAATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 5 0.19
24 2 0.07
25 20 0.74
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.39
Consensus pattern (24 bp):
ATAATATTGAAAACACACATATAT
Found at i:106252212 original size:18 final size:17
Alignment explanation
Indices: 106252191--106252230 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
106252181 TAAAACACAC
* *
106252191 ATATATATATATTATAT
1 ATATATAAAAATTATAT
106252208 AATATATAAAAATTATAT
1 -ATATATAAAAATTATAT
106252226 ATATA
1 ATATA
106252231 ATACACTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
ATATATAAAAATTATAT
Found at i:106253460 original size:31 final size:31
Alignment explanation
Indices: 106253422--106253483 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
106253412 CCGGTGGGGT
106253422 TAGGTGATTTAGGGTTTCAAATTTTGAAACC
1 TAGGTGATTTAGGGTTTCAAATTTTGAAACC
106253453 TAGGTGATTTAGGGTTTCAAATTTTGAAACC
1 TAGGTGATTTAGGGTTTCAAATTTTGAAACC
106253484 CTAAATTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (31 bp):
TAGGTGATTTAGGGTTTCAAATTTTGAAACC
Found at i:106254582 original size:22 final size:23
Alignment explanation
Indices: 106254529--106254582 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 23
106254519 AATTCTAAAA
106254529 TATATTTAAAATATATTTATATT
1 TATATTTAAAATATATTTATATT
*
106254552 TACTTTTTAAAAT-T-TTTATAATT
1 TA-TATTTAAAATATATTTAT-ATT
106254575 TATATTTA
1 TATATTTA
106254583 CTTTTTCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 10 0.37
23 8 0.30
24 9 0.33
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (23 bp):
TATATTTAAAATATATTTATATT
Found at i:106259246 original size:12 final size:12
Alignment explanation
Indices: 106259229--106259254 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
106259219 AAAATAGGTC
106259229 TTTAGCGGCGTT
1 TTTAGCGGCGTT
106259241 TTTAGCGGCGTT
1 TTTAGCGGCGTT
106259253 TT
1 TT
106259255 CTCAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:106259353 original size:40 final size:40
Alignment explanation
Indices: 106259309--106259445 Score: 202
Period size: 41 Copynumber: 3.4 Consensus size: 40
106259299 CGTTTTACCA
** * *
106259309 AAAACGCCGCTAAAAGCAGAGCAATAGTGGCGCTTTTGGT
1 AAAACGCCGCTAAAATAAGAGCATTAGCGGCGCTTTTGGT
*
106259349 AAAACGCCGCCAAAAATAAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCG-CTAAAATAAGAGCATTAGCGGCGCTTTTGGT
106259390 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCT-AAAATAAGAGCATTAGCGGCGCTTTTGGT
*
106259431 AAAATGCCGCTAAAA
1 AAAACGCCGCTAAAA
106259446 AGTTTAGGGT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 14 0.16
41 74 0.84
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (40 bp):
AAAACGCCGCTAAAATAAGAGCATTAGCGGCGCTTTTGGT
Found at i:106259810 original size:20 final size:20
Alignment explanation
Indices: 106259793--106259842 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
106259783 TTATGGTTAG
*
106259793 AGGATATAGTTTAGGGTTTA
1 AGGATATAGTTTAGGGATTA
*
106259813 AGGGATATACTTTAGGGATTA
1 A-GGATATAGTTTAGGGATTA
*
106259834 AGGTTATAG
1 AGGATATAG
106259843 GGATATAGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.32, C:0.02, G:0.30, T:0.36
Consensus pattern (20 bp):
AGGATATAGTTTAGGGATTA
Found at i:106259820 original size:21 final size:21
Alignment explanation
Indices: 106259794--106259836 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
106259784 TATGGTTAGA
* *
106259794 GGATATAGTTTAGGGTTTAAG
1 GGATATACTTTAGGGATTAAG
106259815 GGATATACTTTAGGGATTAAG
1 GGATATACTTTAGGGATTAAG
106259836 G
1 G
106259837 TTATAGGGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.02, G:0.33, T:0.35
Consensus pattern (21 bp):
GGATATACTTTAGGGATTAAG
Found at i:106260177 original size:26 final size:26
Alignment explanation
Indices: 106260148--106260200 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
106260138 AATTTCCCCG
*
106260148 ATTTCCCCCAACTTCTTCTCCCTCAA
1 ATTTCCCCCAACTTCTTCTCCCCCAA
106260174 ATTTCCCCCAACTTCTTCTCCCCCAA
1 ATTTCCCCCAACTTCTTCTCCCCCAA
106260200 A
1 A
106260201 ATTTTTACCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.47, G:0.00, T:0.32
Consensus pattern (26 bp):
ATTTCCCCCAACTTCTTCTCCCCCAA
Found at i:106260197 original size:15 final size:15
Alignment explanation
Indices: 106260151--106260199 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
106260141 TTCCCCGATT
106260151 TCCCCCAACTTCTTC
1 TCCCCCAACTTCTTC
* *
106260166 TCCCTCAA---ATT-
1 TCCCCCAACTTCTTC
106260177 TCCCCCAACTTCTTC
1 TCCCCCAACTTCTTC
106260192 TCCCCCAA
1 TCCCCCAA
106260200 AATTTTTACC
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
11 7 0.27
12 2 0.08
14 2 0.08
15 15 0.58
ACGTcount: A:0.18, C:0.51, G:0.00, T:0.31
Consensus pattern (15 bp):
TCCCCCAACTTCTTC
Found at i:106263428 original size:183 final size:183
Alignment explanation
Indices: 106263120--106263671 Score: 1041
Period size: 183 Copynumber: 3.0 Consensus size: 183
106263110 GATATAGTTC
* * * *
106263120 CATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
106263185 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
106263250 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
106263303 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
1 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
106263368 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
106263433 GTTTTTATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
106263486 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
1 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
106263551 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
106263616 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTATTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
106263669 CAT
1 CAT
106263672 CTGTTCTAGG
Statistics
Matches: 361, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 361 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (183 bp):
CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:106263892 original size:15 final size:15
Alignment explanation
Indices: 106263872--106263900 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
106263862 GGAGTAGACC
106263872 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
106263887 AGGTACGTTTTATT
1 AGGTACGTTTTATT
106263901 TCAAAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Found at i:106264651 original size:274 final size:274
Alignment explanation
Indices: 106264162--106266080 Score: 3645
Period size: 274 Copynumber: 7.0 Consensus size: 274
106264152 CCAACCTTAT
106264162 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
106264227 GCAAGATACAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
106264292 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
106264357 AAAATTAAACTACGATTCTTTTTTATTATTATTATATTCAAATTACTA-TTTTTTATATTAATAA
196 AAAATTAAACTACGATTC-TTTTTATTATTATTATATTCAAATTACTATTTTTTTATATTAATAA
106264421 TGTTTGATTTTAATA
260 TGTTTGATTTTAATA
*
106264436 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGTCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
106264501 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
106264566 AAAGACTTGAAAATAGTTCTATTGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
106264631 AAAATTAAACTACGATTCTTTTTTATTATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTC-TTTTTATTATTATTATATTCAAATTACTATTTTTTTATATTAATAA
106264696 TGTTTGATTTTAATA
260 TGTTTGATTTTAATA
*
106264711 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATGTCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
106264776 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
106264841 AAAGACTTGAAAATAGTTCTATTGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
106264906 AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
106264971 GTTTGATTTTAATA
261 GTTTGATTTTAATA
106264985 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
106265050 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACATATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
106265115 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATA-TTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
106265179 AAAATTAAACTACGATTCTTTTT-TTATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
106265243 GTTTGATTTTAATA
261 GTTTGATTTTAATA
106265257 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
106265322 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGTCACGTATGATGAATCTTAAAAAATTC-A
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
106265386 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
106265451 AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTATTTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTA-TTTTTTTATATTAATAA
106265516 TGTTTGATTTTAATA
260 TGTTTGATTTTAATA
*
106265531 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
106265596 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
106265661 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
106265726 AAAATTAAACTACGATTCTTTTT-TTATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
106265790 GTTTGATTTTAATA
261 GTTTGATTTTAATA
*
106265804 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
* *
106265869 GTAAGATATAATGGATCCTCCCTAGATGTAACAACGCCACGTATGATGAATCTT-AAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
106265933 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
*
106265998 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTA-TTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTAT-TATTATTATATTCAAATTACTATTTTTTTATATTAATAA
106266062 TGTTTGATTTTAATA
260 TGTTTGATTTTAATA
106266077 TTTA
1 TTTA
106266081 CGATTCTTTT
Statistics
Matches: 1622, Mismatches: 16, Indels: 15
0.98 0.01 0.01
Matches are distributed among these distances:
271 45 0.03
272 322 0.20
273 249 0.15
274 675 0.42
275 331 0.20
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (274 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
GTTTGATTTTAATA
Found at i:106265531 original size:546 final size:546
Alignment explanation
Indices: 106264162--106266080 Score: 3646
Period size: 546 Copynumber: 3.5 Consensus size: 546
106264152 CCAACCTTAT
106264162 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
106264227 GCAAGATACAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
106264292 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
106264357 AAAATTAAACTACGATTCTTTTTTATTATTATTATATTCAAATTACTATTTTTTATATTAATAAT
196 AAAATTAAACTACGATTC-TTTTTATTATTATTATATTCAAATTACTATTTTTTATATTAATAAT
106264422 GTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTG
260 GTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTG
*
106264487 TCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAAT
325 CCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAAT
*
106264552 CTTAAAAAATTCAAAAAGACTTGAAAATAGTTCTATTGAGCTCATTTACTATTGAATATTTATTT
390 CTTAAAAAATTCAAAAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTT
106264617 CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATTATTATTATATTCAAATTACTATTT
455 CCAATTTACTTATAAAAATTAAACTACGATTC-TTTTT-TTATTATTATATTCAAATTACTATTT
106264682 TTTTATATTAATAATGTTTGATTTTAATA
518 TTTTATATTAATAATGTTTGATTTTAATA
*
106264711 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATGTCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
106264776 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
106264841 AAAGACTTGAAAATAGTTCTATTGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
106264906 AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTA-TTTTTTATATTAATAAT
106264971 GTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTG
260 GTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTG
*
106265036 CCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACATATGATGAAT
325 CCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAAT
106265101 CTTAAAAAATTCAAAAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATA-TTATTT
390 CTTAAAAAATTCAAAAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTT
106265165 CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATTATTATATTCAAATTACTATTTTT
455 CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATTATTATATTCAAATTACTATTTTT
106265230 TTATATTAATAATGTTTGATTTTAATA
520 TTATATTAATAATGTTTGATTTTAATA
106265257 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
106265322 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGTCACGTATGATGAATCTTAAAAAATTC-A
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
106265386 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
106265451 AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTATTTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTA--TTTTTTATATTAATAA
*
106265516 TGTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTT
259 TGTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTT
106265581 GCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAA
324 GCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAA
106265646 TCTTAAAAAATTCAAAAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATT
389 TCTTAAAAAATTCAAAAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATT
106265711 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATTATTATATTCAAATTACTATTTT
454 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATTATTATATTCAAATTACTATTTT
106265776 TTTATATTAATAATGTTTGATTTTAATA
519 TTTATATTAATAATGTTTGATTTTAATA
*
106265804 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
* *
106265869 GTAAGATATAATGGATCCTCCCTAGATGTAACAACGCCACGTATGATGAATCTT-AAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
106265933 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
*
106265998 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTAT-TATTATTATATTCAAATTACTATTTTTTATATTAATAAT
106266063 GTTTGATTTTAATATTTA
260 GTTTGATTTTAATATTTA
106266081 CGATTCTTTT
Statistics
Matches: 1349, Mismatches: 16, Indels: 13
0.98 0.01 0.01
Matches are distributed among these distances:
545 112 0.08
546 428 0.32
547 308 0.23
548 89 0.07
549 412 0.31
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (546 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
AAAATTAAACTACGATTCTTTTTATTATTATTATATTCAAATTACTATTTTTTATATTAATAATG
TTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGC
CTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATC
TTAAAAAATTCAAAAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTC
CAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATTATTATATTCAAATTACTATTTTTT
TATATTAATAATGTTTGATTTTAATA
Found at i:106266089 original size:71 final size:71
Alignment explanation
Indices: 106266008--106266170 Score: 292
Period size: 71 Copynumber: 2.3 Consensus size: 71
106265998 AAAATTAAAC
106266008 TACGATTCTTTTTTTATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTGATTT
1 TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTT
106266072 TAATATT
66 TAATA-T
106266079 TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTT
1 TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTT
**
106266144 TTTTAT
66 TAATAT
106266150 TACGATTCTTTTTTTATATTA
1 TACGATTCTTTTTTTATATTA
106266171 ATATGTACTT
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
71 60 0.67
72 29 0.33
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (71 bp):
TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTT
TAATAT
Found at i:106266316 original size:15 final size:15
Alignment explanation
Indices: 106266298--106266327 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
106266288 ATAATTTTTA
106266298 TAAATATTATTTAAT
1 TAAATATTATTTAAT
106266313 TAAATATTATTTAAT
1 TAAATATTATTTAAT
106266328 CCTGCTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TAAATATTATTTAAT
Found at i:106266445 original size:9 final size:9
Alignment explanation
Indices: 106266433--106266602 Score: 78
Period size: 9 Copynumber: 18.4 Consensus size: 9
106266423 ATTTGATATC
*
106266433 ATAATTTAT
1 ATAACTTAT
106266442 ATAACTTAT
1 ATAACTTAT
*
106266451 ATAACTTAG
1 ATAACTTAT
*
106266460 ATAA-ATAT
1 ATAACTTAT
*
106266468 ATAACTTAC
1 ATAACTTAT
*
106266477 ATAACTTAC
1 ATAACTTAT
106266486 ATAATACTTAAAT
1 AT-A-ACTT--AT
**
106266499 ATATTTTATTT
1 ATAACTTA--T
* *
106266510 CATAATTTAC
1 -ATAACTTAT
*
106266520 ATAACTTAC
1 ATAACTTAT
106266529 ATAACTTAT
1 ATAACTTAT
*
106266538 ATAACTTAG
1 ATAACTTAT
106266547 ATAA--TAT
1 ATAACTTAT
* *
106266554 ATAATTTAC
1 ATAACTTAT
*
106266563 ATAA-ATAT
1 ATAACTTAT
* *
106266571 ATATCATAT
1 ATAACTTAT
*
106266580 CATAACTTAC
1 -ATAACTTAT
*
106266590 ATAACTTAC
1 ATAACTTAT
106266599 ATAA
1 ATAA
106266603 TACTTAATAT
Statistics
Matches: 127, Mismatches: 22, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
7 6 0.05
8 11 0.09
9 85 0.67
10 7 0.06
11 7 0.06
12 8 0.06
13 3 0.02
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.41
Consensus pattern (9 bp):
ATAACTTAT
Found at i:106266473 original size:26 final size:26
Alignment explanation
Indices: 106266439--106266593 Score: 86
Period size: 26 Copynumber: 6.0 Consensus size: 26
106266429 TATCATAATT
* *
106266439 TATATAACTTATATAACTTAGATAAA
1 TATATAACTTACATAACTTACATAAA
106266465 TATATAACTTACATAACTTACAT-AA
1 TATATAACTTACATAACTTACATAAA
* ** * * *
106266490 TACT-TAAATATATTTTA-TTTCATAATT
1 TA-TATAACT-TACATAACTTACATAA-A
* * *
106266517 TACATAACTTACATAACTTATATAACT
1 TATATAACTTACATAACTTACATAA-A
* * *
106266544 TAGATAA--TATATAATTTACATAAA
1 TATATAACTTACATAACTTACATAAA
* *
106266568 TATATATCATATCATAACTTACATAA
1 TATATAACTTA-CATAACTTACATAA
106266594 CTTACATAAT
Statistics
Matches: 95, Mismatches: 25, Indels: 17
0.69 0.18 0.12
Matches are distributed among these distances:
24 5 0.05
25 26 0.27
26 33 0.35
27 31 0.33
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.41
Consensus pattern (26 bp):
TATATAACTTACATAACTTACATAAA
Found at i:106266525 original size:52 final size:58
Alignment explanation
Indices: 106266464--106266616 Score: 167
Period size: 52 Copynumber: 2.7 Consensus size: 58
106266454 ACTTAGATAA
* **
106266464 ATAT-ATAACTTACATAACTTACATAATACTTAA-ATATATTTTA-TTTCATA-AT-T
1 ATATCATAACTTACATAACTTACATAATACTTAATATATATTTTACATAAATATATAT
* ** *
106266517 -TA-CATAACTTACATAACTTATATAACTTAGATAATATATAATTTACATAAATATATAT
1 ATATCATAACTTACATAACTTACATAA--TACTTAATATATATTTTACATAAATATATAT
106266575 CATATCATAACTTACATAACTTACATAATACTTAATATATAT
1 -ATATCATAACTTACATAACTTACATAATACTTAATATATAT
106266617 CATATCATAC
Statistics
Matches: 79, Mismatches: 11, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
52 23 0.29
54 5 0.06
55 9 0.11
56 4 0.05
57 2 0.03
58 1 0.01
59 11 0.14
60 2 0.03
61 22 0.28
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.41
Consensus pattern (58 bp):
ATATCATAACTTACATAACTTACATAATACTTAATATATATTTTACATAAATATATAT
Found at i:106266558 original size:43 final size:43
Alignment explanation
Indices: 106266432--106266566 Score: 143
Period size: 43 Copynumber: 3.1 Consensus size: 43
106266422 TATTTGATAT
* * *
106266432 CATAATTTATATAACTTATATAACTTAGATAAATATATAACTTA
1 CATAACTTACATAACTTATATAACTTAGAT-AATATATAATTTA
* * *
106266476 CATAACTTACATAATACTTAAATATA-TT---TTATTTCATAATTTA
1 CATAACTTACAT-A-ACTTATATA-ACTTAGATAATAT-ATAATTTA
106266519 CATAACTTACATAACTTATATAACTTAGATAATATATAATTTA
1 CATAACTTACATAACTTATATAACTTAGATAATATATAATTTA
106266562 CATAA
1 CATAA
106266567 ATATATATCA
Statistics
Matches: 74, Mismatches: 9, Indels: 17
0.74 0.09 0.17
Matches are distributed among these distances:
40 1 0.01
41 10 0.14
42 4 0.05
43 33 0.45
44 14 0.19
45 1 0.01
46 10 0.14
47 1 0.01
ACGTcount: A:0.46, C:0.11, G:0.01, T:0.41
Consensus pattern (43 bp):
CATAACTTACATAACTTATATAACTTAGATAATATATAATTTA
Found at i:106272561 original size:31 final size:31
Alignment explanation
Indices: 106272515--106272581 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
106272505 TGGTTGTATT
* *
106272515 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
106272546 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
106272577 TTTTA
1 TTTTA
106272582 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:106272716 original size:43 final size:43
Alignment explanation
Indices: 106272655--106272990 Score: 575
Period size: 43 Copynumber: 7.8 Consensus size: 43
106272645 GTAAAAAAAG
* *
106272655 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCCCAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
* *
106272698 CGCCGCTAAAAGCCTTGACCTTTAGTGGCGCTTTTACCCCAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
106272741 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
*
106272784 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAG
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
*
106272827 CGCCACTAAAAGCCTTGACCTTTAGCGGCGCTTTT-CTCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTAC-CACAAA
106272870 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
*
106272913 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
* *
106272956 CGCCGCTAAAATCCTTGACCTTTAGCGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
106272991 TCCCAATAAA
Statistics
Matches: 280, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
42 1 0.00
43 278 0.99
44 1 0.00
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.25
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
Found at i:106274982 original size:26 final size:27
Alignment explanation
Indices: 106274932--106274988 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
106274922 TAAAAATATT
106274932 TTTATATTTAGTTTTTAAAATTTTA-A
1 TTTATATTTAGTTTTTAAAATTTTATA
* *
106274958 TTTATATTTACTTTTTTATAA-TTTATA
1 TTTATATTTA-GTTTTTAAAATTTTATA
106274985 TTTA
1 TTTA
106274989 CTTTTCCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTATATTTAGTTTTTAAAATTTTATA
Found at i:106275854 original size:18 final size:18
Alignment explanation
Indices: 106275818--106275852 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
106275808 ACGTTTATAA
106275818 TAACATTTTTAAAGTTTT
1 TAACATTTTTAAAGTTTT
106275836 TAACA-TTTTAAA-TTTT
1 TAACATTTTTAAAGTTTT
106275852 T
1 T
106275853 TTTATAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 7 0.41
18 5 0.29
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (18 bp):
TAACATTTTTAAAGTTTT
Found at i:106284369 original size:93 final size:93
Alignment explanation
Indices: 106284257--106284429 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
106284247 CGCCCATAAG
* *
106284257 CGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCA
106284322 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* * *
106284350 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCA
*
106284415 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
106284430 CAAATATCCA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:106284425 original size:46 final size:46
Alignment explanation
Indices: 106284250--106284425 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
106284240 TGTAACCCGC
* * * *
106284250 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
106284296 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
* *
106284346 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
106284389 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
106284426 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 67 0.61
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Done.