Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 334 of 343
Found at i:106929934 original size:16 final size:16
Alignment explanation
Indices: 106929913--106929964 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
106929903 AGTGTGGAAA
106929913 GAAAATTAGAAAGATG
1 GAAAATTAGAAAGATG
*
106929929 GAAAATT-GAAAGGATA
1 GAAAATTAGAAA-GATG
**
106929945 GAAAAACAGAAAGATAG
1 GAAAATTAGAAAGAT-G
106929962 GAA
1 GAA
106929965 TTACAATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
15 4 0.14
16 18 0.62
17 7 0.24
ACGTcount: A:0.60, C:0.02, G:0.25, T:0.13
Consensus pattern (16 bp):
GAAAATTAGAAAGATG
Found at i:106935321 original size:6 final size:6
Alignment explanation
Indices: 106935284--106935317 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
106935274 TTGTACCATT
* *
106935284 ATCAAC ATCAAC ATCAAC ATCACC ATCATC ATCA
1 ATCAAC ATCAAC ATCAAC ATCAAC ATCAAC ATCA
106935318 TCATATCATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (6 bp):
ATCAAC
Found at i:106942062 original size:17 final size:17
Alignment explanation
Indices: 106942040--106942073 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
106942030 ATCCACTAAT
*
106942040 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
106942057 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
106942074 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:106946691 original size:17 final size:17
Alignment explanation
Indices: 106946669--106946702 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
106946659 ATCCACTAAT
*
106946669 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
106946686 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
106946703 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:106948242 original size:38 final size:39
Alignment explanation
Indices: 106948158--106948292 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
106948148 ACCAATATGG
*
106948158 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
106948197 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
106948235 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
106948276 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
106948293 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:106949879 original size:5 final size:5
Alignment explanation
Indices: 106949861--106949896 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
106949851 TTTCTTTTAT
106949861 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA
106949897 CTTAATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:106956707 original size:18 final size:18
Alignment explanation
Indices: 106956684--106956776 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
106956674 CCCAACTACT
*
106956684 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* *
106956702 GTATACGTGAATAGTGCT
1 GTATACGTGAATAGTACC
* *
106956720 GTATATGTAAATAGTACC
1 GTATACGTGAATAGTACC
* *
106956738 GTATACGTAAATAGTGCC
1 GTATACGTGAATAGTACC
106956756 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
106956774 GTA
1 GTA
106956777 AACGGTCGTA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:106956736 original size:36 final size:36
Alignment explanation
Indices: 106956682--106956776 Score: 145
Period size: 36 Copynumber: 2.6 Consensus size: 36
106956672 ATCCCAACTA
* *
106956682 CTGTATACGTGAACAGTACCGTATACGTGAATAGTG
1 CTGTATACGTGAATAGTACCGTATACGTAAATAGTG
* *
106956718 CTGTATATGTAAATAGTACCGTATACGTAAATAGTG
1 CTGTATACGTGAATAGTACCGTATACGTAAATAGTG
*
106956754 CCGTATACGTGAATAGTACCGTA
1 CTGTATACGTGAATAGTACCGTA
106956777 AACGGTCGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (36 bp):
CTGTATACGTGAATAGTACCGTATACGTAAATAGTG
Found at i:106960405 original size:22 final size:22
Alignment explanation
Indices: 106960365--106960406 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
106960355 TGAGTCAATC
* *
106960365 ATTTCGAATTTGAACTATTTTA
1 ATTTCGAATTTAAAATATTTTA
*
106960387 ATTTCGAGTTTAAAATATTT
1 ATTTCGAATTTAAAATATTT
106960407 GTTCATGCCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (22 bp):
ATTTCGAATTTAAAATATTTTA
Found at i:106968513 original size:30 final size:31
Alignment explanation
Indices: 106968449--106968512 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
106968439 AGTTTAAAAA
*
106968449 TTTAGGTAATAGTTATATAAGTATTAATATT
1 TTTAGGTAATAGTTATATAAGTAATAATATT
106968480 TTTA-GTAATAGTTATATATTA-TAATAATATT
1 TTTAGGTAATAGTTATATA--AGTAATAATATT
106968511 TT
1 TT
106968513 ATGTATTAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 14 0.47
31 15 0.50
32 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (31 bp):
TTTAGGTAATAGTTATATAAGTAATAATATT
Found at i:106970062 original size:24 final size:26
Alignment explanation
Indices: 106970015--106970062 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
106970005 CATGATCAAA
**
106970015 ACCACCCCGTCATCATCATCAACATC
1 ACCACCCCGTCATCATCAAAAACATC
106970041 ACCA-CCC-TCATCATCAAAAACA
1 ACCACCCCGTCATCATCAAAAACA
106970063 AAAAGATGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 13 0.65
25 3 0.15
26 4 0.20
ACGTcount: A:0.38, C:0.44, G:0.02, T:0.17
Consensus pattern (26 bp):
ACCACCCCGTCATCATCAAAAACATC
Found at i:106971907 original size:21 final size:20
Alignment explanation
Indices: 106971875--106971930 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
106971865 GATTTAGGGT
106971875 TTTAGGTCCAAAGTCTAGAG
1 TTTAGGTCCAAAGTCTAGAG
* *
106971895 TTTAGGATTCAAATTCTAGAG
1 TTTAGG-TCCAAAGTCTAGAG
*
106971916 TCTTCGGTCCAAAGT
1 T-TTAGGTCCAAAGT
106971931 TTAGGATTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 6 0.21
21 19 0.66
22 4 0.14
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (20 bp):
TTTAGGTCCAAAGTCTAGAG
Found at i:106973261 original size:34 final size:35
Alignment explanation
Indices: 106973218--106973287 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
106973208 CAATATACAT
106973218 TGTA-TTTTTTGCAAAATGATTGACAAAAATCGAA
1 TGTATTTTTTTGCAAAATGATTGACAAAAATCGAA
106973252 TGTATTTTTTTGCAAAATGATTGACAAAAATCGAA
1 TGTATTTTTTTGCAAAATGATTGACAAAAATCGAA
106973287 T
1 T
106973288 CAAAATAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (35 bp):
TGTATTTTTTTGCAAAATGATTGACAAAAATCGAA
Found at i:106980379 original size:27 final size:26
Alignment explanation
Indices: 106980326--106980381 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
106980316 AGTACTGTTT
** *
106980326 TAACAAAGAAAAATATCAGAAGCAAC
1 TAACAAAGAAAAATAAAAGAAGAAAC
*
106980352 TAACCAAGAAAAATAAAAGAGAGAAAC
1 TAACAAAGAAAAATAAAAGA-AGAAAC
106980379 TAA
1 TAA
106980382 GATGAACACA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.11
Consensus pattern (26 bp):
TAACAAAGAAAAATAAAAGAAGAAAC
Found at i:106985481 original size:15 final size:15
Alignment explanation
Indices: 106985457--106985502 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
106985447 ATAATCTTTT
*
106985457 TAAAAAATAATACAA
1 TAAAAAATAATAAAA
*
106985472 TAAAATATAATAAAA
1 TAAAAAATAATAAAA
106985487 TATTAAAAATAATAAA
1 TA--AAAAATAATAAA
106985503 GAATATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 15 0.58
17 11 0.42
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAAATAATAAAA
Found at i:106999086 original size:15 final size:15
Alignment explanation
Indices: 106999061--106999106 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
106999051 TTTAATTAAA
106999061 TAAATAATTAAAAAAT
1 TAAAT-ATTAAAAAAT
* * *
106999077 TATATTTTAAAAATT
1 TAAATATTAAAAAAT
106999092 TAAATATTAAAAAAT
1 TAAATATTAAAAAAT
106999107 AAAAAATCGA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TAAATATTAAAAAAT
Found at i:106999109 original size:14 final size:14
Alignment explanation
Indices: 106999058--106999109 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
106999048 TGATTTAATT
106999058 AAATAAATAATTAAA
1 AAATAAAT-ATTAAA
* *
106999073 AAATTATATTTTAAA
1 AAA-TAAATATTAAA
*
106999088 AATTTAAATATTAAA
1 AA-ATAAATATTAAA
106999103 AAATAAA
1 AAATAAA
106999110 AAATCGATTC
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
14 4 0.14
15 21 0.72
16 4 0.14
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
AAATAAATATTAAA
Found at i:107003753 original size:18 final size:18
Alignment explanation
Indices: 107003730--107003766 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
107003720 CAAAAATTGA
*
107003730 TTAATTAATTAAATTAAT
1 TTAATTAAGTAAATTAAT
*
107003748 TTAATTCAGTAAATTAAT
1 TTAATTAAGTAAATTAAT
107003766 T
1 T
107003767 CGATTTTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (18 bp):
TTAATTAAGTAAATTAAT
Found at i:107005291 original size:37 final size:38
Alignment explanation
Indices: 107005245--107005318 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 38
107005235 AACCACTAAC
*
107005245 TCCATCACCCTACTAAACCATCCACTACCTCTATCACA
1 TCCATCACCCTACTAAACCATCCACTACCTCCATCACA
*
107005283 TCCA-CACCCTACTAAACCGTCCACTACCTCCATCAC
1 TCCATCACCCTACTAAACCATCCACTACCTCCATCAC
107005319 CCCCACTAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 30 0.88
38 4 0.12
ACGTcount: A:0.30, C:0.47, G:0.01, T:0.22
Consensus pattern (38 bp):
TCCATCACCCTACTAAACCATCCACTACCTCCATCACA
Found at i:107005326 original size:18 final size:18
Alignment explanation
Indices: 107005303--107005338 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
107005293 ACTAAACCGT
*
107005303 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
107005321 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
107005339 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.58, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:107005424 original size:11 final size:11
Alignment explanation
Indices: 107005408--107005446 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
107005398 GGGATTTTGG
107005408 AGAGGATTTTT
1 AGAGGATTTTT
107005419 AGAGGATTTTT
1 AGAGGATTTTT
*
107005430 GGAGGAATTTTTT
1 AGAGG-A-TTTTT
107005443 AGAG
1 AGAG
107005447 AATACACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 15 0.62
12 1 0.04
13 8 0.33
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (11 bp):
AGAGGATTTTT
Found at i:107005771 original size:60 final size:61
Alignment explanation
Indices: 107005651--107005767 Score: 152
Period size: 60 Copynumber: 2.0 Consensus size: 61
107005641 CCTTTTTTTA
*
107005651 TTTTTGTTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATATTTG
1 TTTTTGTTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTTTTATATTTG
* * *
107005713 TTTTT-TTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATAT
1 TTTTTGTTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTTTTATAT
107005768 ATTTATTATG
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
58 14 0.28
59 4 0.08
60 20 0.40
61 7 0.14
62 5 0.10
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.62
Consensus pattern (61 bp):
TTTTTGTTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTTTTATATTTG
Found at i:107009884 original size:21 final size:21
Alignment explanation
Indices: 107009854--107009898 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
107009844 GAGGGATCAA
*
107009854 ATGCTAGAGTCTCAGAAA-AAC
1 ATGCTAGAGTCACA-AAACAAC
*
107009875 ATGCTGGAGTCACAAAACAAC
1 ATGCTAGAGTCACAAAACAAC
107009896 ATG
1 ATG
107009899 ATGAGCCAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (21 bp):
ATGCTAGAGTCACAAAACAAC
Found at i:107012436 original size:13 final size:13
Alignment explanation
Indices: 107012420--107012465 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
107012410 AAAAAAAAAG
107012420 AAGAGAAAAAGGA
1 AAGAGAAAAAGGA
107012433 AAGAGAAAAAAGGA
1 AAGAG-AAAAAGGA
*
107012447 AA-AGGAAAAGGA
1 AAGAGAAAAAGGA
*
107012459 AAAAGAA
1 AAGAGAA
107012466 GAGAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 9 0.31
13 10 0.34
14 10 0.34
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
AAGAGAAAAAGGA
Found at i:107012451 original size:20 final size:19
Alignment explanation
Indices: 107012426--107012496 Score: 67
Period size: 18 Copynumber: 3.8 Consensus size: 19
107012416 AAAGAAGAGA
107012426 AAAAGGAAAGAGAAAAAAGG
1 AAAAGGAAA-AGAAAAAAGG
*
107012446 AAAAGGAAAAGGAAAAA-G
1 AAAAGGAAAAGAAAAAAGG
* * *
107012464 AAGAGAAAAATAAAAAA-G
1 AAAAGGAAAAGAAAAAAGG
107012482 AGAAA-GAAAAGAAAA
1 A-AAAGGAAAAGAAAA
107012497 GCAAAGGAGA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
18 24 0.57
19 9 0.21
20 9 0.21
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.01
Consensus pattern (19 bp):
AAAAGGAAAAGAAAAAAGG
Found at i:107012455 original size:26 final size:26
Alignment explanation
Indices: 107012412--107012465 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
107012402 TCACTTTCAA
* *
107012412 AAAAAAAGAAGAGAAAAAGGAAAGAG
1 AAAAAAAGAAAAGAAAAAGGAAAAAG
* *
107012438 AAAAAAGGAAAAGGAAAAGGAAAAAG
1 AAAAAAAGAAAAGAAAAAGGAAAAAG
107012464 AA
1 AA
107012466 GAGAAAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (26 bp):
AAAAAAAGAAAAGAAAAAGGAAAAAG
Found at i:107012481 original size:31 final size:34
Alignment explanation
Indices: 107012424--107012486 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 34
107012414 AAAAAGAAGA
*
107012424 GAAAAAGGAAAGAGAAAAAAGGAAAAG-GAAAAG
1 GAAAAAGGAAAGAGAAAAAAGAAAAAGAGAAAAG
107012457 GAAAAA-G-AAGAGAAAAATA-AAAAAGAGAAA
1 GAAAAAGGAAAGAGAAAAA-AGAAAAAGAGAAA
107012487 GAAAAGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
31 15 0.56
32 6 0.22
33 6 0.22
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (34 bp):
GAAAAAGGAAAGAGAAAAAAGAAAAAGAGAAAAG
Found at i:107013956 original size:90 final size:90
Alignment explanation
Indices: 107013848--107014235 Score: 407
Period size: 90 Copynumber: 4.3 Consensus size: 90
107013838 TTCGACAGAT
* * *
107013848 CTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGTAAATCTTACCTCCATGTATCGGC
1 CTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAATTTTGGCAAATCTTATCTCCATGTATCGGC
107013913 AATGGAGCAGATTTCAGCCACCAGC
66 AATGGAGCAGATTTCAGCCACCAGC
* * * * * * *
107013938 CTTATCTTCACTGAGCAGGAGTGAAGCAG-GCTAAA-TATAGCAGATCTCATC-CCACTGGCTGG
1 CTTATCTTCACTGAGCAGGAGCGGAGCAGATC-AAATTTTGGCAAATCTTATCTCCA-T-G-T--
** * * * *
107014000 AGT-GG-AACAGACCAAATTT-TG--A-CAGAT
60 A-TCGGCAATGGAGCAGATTTCAGCCACCAG-C
* *
107014027 CTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAATTTTGGCGAATCTTATCTTCATGTATCGGC
1 CTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAATTTTGGCAAATCTTATCTCCATGTATCGGC
* * *
107014092 ATTGGAGCAGATTTTAGCCACAAGC
66 AATGGAGCAGATTTCAGCCACCAGC
**
107014117 CTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCATGTATCGGC
1 CTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAATTTTGGCAAATCTTATCTCCATGTATCGGC
* *
107014182 AATGGAGTAGATTTCAGCCACCAAC
66 AATGGAGCAGATTTCAGCCACCAGC
*
107014207 CTTATCTTCACTGAGCAGGAGTGGAGCAG
1 CTTATCTTCACTGAGCAGGAGCGGAGCAG
107014236 GCTAAACATA
Statistics
Matches: 240, Mismatches: 41, Indels: 34
0.76 0.13 0.11
Matches are distributed among these distances:
85 1 0.00
86 3 0.01
87 9 0.04
88 8 0.03
89 44 0.18
90 155 0.65
91 6 0.03
92 10 0.04
93 3 0.01
94 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (90 bp):
CTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAATTTTGGCAAATCTTATCTCCATGTATCGGC
AATGGAGCAGATTTCAGCCACCAGC
Found at i:107014064 original size:46 final size:46
Alignment explanation
Indices: 107013767--107014304 Score: 176
Period size: 46 Copynumber: 12.0 Consensus size: 46
107013757 AGCCTTATCA
* * * *
107013767 CACTGAGCAGGAGTGGAACAGA-CTAAATATAG-CAGAT-TTCATC-C
1 CACTGAGCAGGAGTGGAGCAGATC-AAATTTTGACAGATCTT-ATCTT
** *
107013811 CACTG-GCAGGAGTGGAATAGATCAAATTTCGACAGATCTTATCTT
1 CACTGAGCAGGAGTGGAGCAGATCAAATTTTGACAGATCTTATCTT
* * ** * * *
107013856 CGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGTAAATCTTACCTC
1 CACTGAGCAGGAGTGGAGCAGATCAAATTTTGACAGATCTTATCTT
* * ** *
107013902 CA-TGTATC-GGCAATGGAGCAGAT----TTCAGCCACCAG-CCTTATCTT
1 CACTG-AGCAGG-AGTGGAGCAGATCAAATTTTG--A-CAGATCTTATCTT
* * * * * *
107013946 CACTGAGCAGGAGTGAAGCAG-GCTAAATATAG-CAGATCTCATC-C
1 CACTGAGCAGGAGTGGAGCAGATC-AAATTTTGACAGATCTTATCTT
* * *
107013990 CACTG-GCTGGAGTGGAACAGACCAAATTTTGACAGATCTTATCTT
1 CACTGAGCAGGAGTGGAGCAGATCAAATTTTGACAGATCTTATCTT
* *
107014035 CACTGAGCAGGAGCGGAGCAGATCAAATTTTGGC-GAATCTTATCTT
1 CACTGAGCAGGAGTGGAGCAGATCAAATTTTGACAG-ATCTTATCTT
* * * *
107014081 CA-TGTATC-GGCATTGGAGCAGAT----TTTAGCCACA-AGCCTTATCTT
1 CACTG-AGCAGG-AGTGGAGCAGATCAAATTTTG--ACAGA-TCTTATCTT
* ** *
107014125 CACTGAGCAGGAGCGGAGCAGATCAAATTTTG-GTGAATCTTATCTC
1 CACTGAGCAGGAGTGGAGCAGATCAAATTTTGACAG-ATCTTATCTT
* * * ** *
107014171 CA-TGTATC-GGCAATGGAGTAGAT----TTCAGCCACCA-ACCTTATCTT
1 CACTG-AGCAGG-AGTGGAGCAGATCAAATTTTG--A-CAGATCTTATCTT
* **
107014215 CACTGAGCAGGAGTGGAGCAG-GCTAAA-CAT-ACCAGATCTTATCTT
1 CACTGAGCAGGAGTGGAGCAGATC-AAATTTTGA-CAGATCTTATCTT
* *
107014260 CACTGAGCAGGAGTGAAGCAGATCAAATTTTGTCA-AGTCTTATCT
1 CACTGAGCAGGAGTGGAGCAGATCAAATTTTGACAGA-TCTTATCT
107014305 CCATGTATCG
Statistics
Matches: 354, Mismatches: 85, Indels: 108
0.65 0.16 0.20
Matches are distributed among these distances:
42 10 0.03
43 40 0.11
44 98 0.28
45 75 0.21
46 123 0.35
47 1 0.00
48 7 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (46 bp):
CACTGAGCAGGAGTGGAGCAGATCAAATTTTGACAGATCTTATCTT
Found at i:107014067 original size:179 final size:179
Alignment explanation
Indices: 107013755--107014146 Score: 608
Period size: 179 Copynumber: 2.2 Consensus size: 179
107013745 CAGATTTCGG
* *
107013755 CAAGCCTTATC-ACACTGAGCAGGAGTGGAACAGACTAAATATAGCAGATTTCATCCCACTGGCA
1 CAAGCCTTATCTTCACTGAGCAGGAGTGGAACAGACTAAATATAGCAGATCTCATCCCACTGGCA
* * *
107013819 GGAGTGGAATAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAAT
66 GGAGTGGAACAGACCAAATTTCGACAGATCTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAAT
*
107013884 TTTGGTAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCA
131 TTTGGCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCA
* *
107013933 CCAGCCTTATCTTCACTGAGCAGGAGT-GAAGCAGGCTAAATATAGCAGATCTCATCCCACTGGC
1 CAAGCCTTATCTTCACTGAGCAGGAGTGGAA-CAGACTAAATATAGCAGATCTCATCCCACTGGC
* *
107013997 TGGAGTGGAACAGACCAAATTTTGACAGATCTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAA
65 AGGAGTGGAACAGACCAAATTTCGACAGATCTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAA
* * * * *
107014062 TTTTGGCGAATCTTATCTTCATGTATCGGCATTGGAGCAGATTTTAGCCA
130 TTTTGGCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCA
* *
107014112 CAAGCCTTATCTTCACTGAGCAGGAGCGGAGCAGA
1 CAAGCCTTATCTTCACTGAGCAGGAGTGGAACAGA
107014147 TCAAATTTTG
Statistics
Matches: 192, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
178 13 0.07
179 177 0.92
180 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (179 bp):
CAAGCCTTATCTTCACTGAGCAGGAGTGGAACAGACTAAATATAGCAGATCTCATCCCACTGGCA
GGAGTGGAACAGACCAAATTTCGACAGATCTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAAT
TTTGGCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCA
Found at i:107014464 original size:133 final size:135
Alignment explanation
Indices: 107013843--107014687 Score: 871
Period size: 133 Copynumber: 6.3 Consensus size: 135
107013833 CAAATTTCGA
* * * * *
107013843 CAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGTAAATCTTACCTCCATGTA
1 CAGATCTTATCTTCACTGAGCAGGAGCAGAGCAGATCAAAATTTGGTGAATCTTATCTCCATGTA
*
107013908 TCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTAAA
66 TCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAA
* *
107013973 TATAG
131 CATAC
* * * ** * * * ** *
107013978 CAGATCTCATC-CCACTG-GCTGGAGTGGAACAGA-CCAAATTTTGACAGATCTTATCTTCACTG
1 CAGATCTTATCTTCACTGAGCAGGAGCAGAGCAGATCAAAATTTGGTGA-ATCTTATCTCCA-TG
* ** ** * * * *
107014040 -AGCAGG-AGCGGAGCAGATCAAATTTTGGCGA--A-TCTTATCTTCA-TGTATC-GGCATTGGA
64 TATC-GGCAATGGAGCAG-----ATTTCAGCCACCAGCCTTATCTTCACTG-AGCAGG-AGTGGA
** * * *
107014098 GCAGATTTTAGC-CAC
121 GCAG-GCTAAACATAC
* * * *
107014113 AAG-CCTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCATGTA
1 CAGATCTTATCTTCACTGAGCAGGAGCAGAGCAGATCAAAATTTGGTGAATCTTATCTCCATGTA
* *
107014177 TCGGCAATGGAGTAGATTTCAGCCACCAACCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAA
66 TCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAA
107014242 CATAC
131 CATAC
* * *
107014247 CAGATCTTATCTTCACTGAGCAGGAG-TGAAGCAGATC-AAATTTTGTCAAGTCTTATCTCCATG
1 CAGATCTTATCTTCACTGAGCAGGAGCAG-AGCAGATCAAAATTTGGTGAA-TCTTATCTCCATG
* * *
107014310 TATCGGCAATTGAGTAAATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-
64 TATCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTA
107014374 AA-ATAC
129 AACATAC
* * * * *
107014380 TAGATCTTGTCTTCGCTGAGCAGGAGCAGAGTAAATCAAAATTTGGTGAATCTTATCTCCATGTA
1 CAGATCTTATCTTCACTGAGCAGGAGCAGAGCAGATCAAAATTTGGTGAATCTTATCTCCATGTA
107014445 TCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT--A
66 TCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAA
*
107014508 TATAC
131 CATAC
* * * * *
107014513 TAGATCTTATCTTCGCTGAGCAGGAGCAAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTA
1 CAGATCTTATCTTCACTGAGCAGGAGCAGAGCAGATCAAAATTTGGTGAATCTTATCTCCATGTA
* ** *
107014578 TCGGCAATGGAGCAGATTCCAATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAA
66 TCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAA
107014643 CATAC
131 CATAC
* * * *
107014648 CAGATCTTATCTTTACTGAGCAGGAGTAAAACAGATCAAA
1 CAGATCTTATCTTCACTGAGCAGGAGCAGAGCAGATCAAA
107014688 TTACAGCAGA
Statistics
Matches: 586, Mismatches: 94, Indels: 60
0.79 0.13 0.08
Matches are distributed among these distances:
131 7 0.01
132 9 0.02
133 265 0.45
134 65 0.11
135 189 0.32
136 36 0.06
137 8 0.01
138 7 0.01
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (135 bp):
CAGATCTTATCTTCACTGAGCAGGAGCAGAGCAGATCAAAATTTGGTGAATCTTATCTCCATGTA
TCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAA
CATAC
Found at i:107014934 original size:29 final size:29
Alignment explanation
Indices: 107014901--107014964 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
107014891 CCAAATTAAA
107014901 CACCCCACTAAACCGA-CCACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
107014930 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
107014959 CACCCC
1 CACCCC
107014965 CACACCCTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 1 0.03
29 30 0.97
ACGTcount: A:0.31, C:0.52, G:0.02, T:0.16
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:107014977 original size:37 final size:37
Alignment explanation
Indices: 107014930--107015004 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
107014920 CTAACTCCAT
107014930 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
*
107014967 CACCCTACTAAACCGTCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
107015004 C
1 C
107015005 TAACTCCATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.28, C:0.55, G:0.01, T:0.16
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:107015006 original size:18 final size:18
Alignment explanation
Indices: 107014946--107015018 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
107014936 ACTAAACCAT
107014946 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * *
107014964 CCAC-ACC-CTACTAAACCGT
1 CCACTACCTCCA-T-CACC-C
107014983 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
*
107015001 CCACTAACTCCATCACCC
1 CCACTACCTCCATCACCC
107015019 TACTTGTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
16 2 0.05
17 4 0.09
18 24 0.56
19 7 0.16
20 4 0.09
21 2 0.05
ACGTcount: A:0.26, C:0.56, G:0.01, T:0.16
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:107015440 original size:60 final size:61
Alignment explanation
Indices: 107015320--107015436 Score: 152
Period size: 60 Copynumber: 2.0 Consensus size: 61
107015310 CCTTTTTTTA
*
107015320 TTTTTGTTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATATTTG
1 TTTTTGTTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTTTTATATTTG
* * *
107015382 TTTTT-TTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATAT
1 TTTTTGTTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTTTTATAT
107015437 ATTTATTATG
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
58 14 0.28
59 4 0.08
60 20 0.40
61 7 0.14
62 5 0.10
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.62
Consensus pattern (61 bp):
TTTTTGTTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTTTTATATTTG
Found at i:107017895 original size:16 final size:17
Alignment explanation
Indices: 107017874--107017912 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
107017864 AACGAATTTT
107017874 TTGTTTGGGCT-ATGGG
1 TTGTTTGGGCTCATGGG
*
107017890 TTGTTTCGGCTCATGGG
1 TTGTTTGGGCTCATGGG
107017907 -TGTTTG
1 TTGTTTG
107017913 ACATTGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.05, C:0.10, G:0.38, T:0.46
Consensus pattern (17 bp):
TTGTTTGGGCTCATGGG
Found at i:107019481 original size:25 final size:25
Alignment explanation
Indices: 107019433--107019486 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
107019423 AATTATTTTC
**
107019433 TAAAATTAAATATTTTAACTAATAA
1 TAAAATTAAATATAGTAACTAATAA
107019458 TAAAATTAAATATAGTAA-TAAATAA
1 TAAAATTAAATATAGTAACT-AATAA
107019483 TAAA
1 TAAA
107019487 TATGGTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (25 bp):
TAAAATTAAATATAGTAACTAATAA
Found at i:107019488 original size:19 final size:18
Alignment explanation
Indices: 107019455--107019494 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
107019445 TTTTAACTAA
*
107019455 TAATAAAATTAAATATAG
1 TAATAAAAATAAATATAG
*
107019473 TAATAAATAATAAATATGG
1 TAATAAA-AATAAATATAG
107019492 TAA
1 TAA
107019495 ATTTAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (18 bp):
TAATAAAAATAAATATAG
Found at i:107021102 original size:15 final size:15
Alignment explanation
Indices: 107021082--107021120 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
107021072 GAATTATTTA
107021082 AAAATATTAAAAGA-T
1 AAAATATTAAAA-ATT
*
107021097 AAAATAATAAAAATT
1 AAAATATTAAAAATT
107021112 AAAATATTA
1 AAAATATTA
107021121 TTTTTACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 1 0.05
15 20 0.95
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (15 bp):
AAAATATTAAAAATT
Found at i:107026147 original size:25 final size:23
Alignment explanation
Indices: 107026097--107026149 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
107026087 ATTGGGCTTA
*
107026097 TAATTTTTTAAAAATTATATTTT
1 TAATTTTTTAAAAATTATATTAT
* *
107026120 TAATTTTTTTAAAATTTTAATTAAT
1 TAATTTTTTAAAAATTAT-ATT-AT
107026145 TAATT
1 TAATT
107026150 AATTATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 16 0.64
24 3 0.12
25 6 0.24
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TAATTTTTTAAAAATTATATTAT
Found at i:107028635 original size:6 final size:6
Alignment explanation
Indices: 107028624--107028659 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
107028614 ATATCTTCTT
* *
107028624 ATAAAA ATAAAA ATAAAA ATAAAT ATAAAT ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
107028660 TTCCAACATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (6 bp):
ATAAAA
Found at i:107028653 original size:16 final size:17
Alignment explanation
Indices: 107028628--107028660 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
107028618 CTTCTTATAA
107028628 AAATAAAAATA-AAAAT
1 AAATAAAAATATAAAAT
*
107028644 AAATATAAATATAAAAT
1 AAATAAAAATATAAAAT
107028661 TCCAACATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
AAATAAAAATATAAAAT
Found at i:107029171 original size:24 final size:25
Alignment explanation
Indices: 107029144--107029190 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
107029134 TAAAAAAATA
*
107029144 TAAAATTT-TAATTTAATACAATGG
1 TAAAATTTATAATCTAATACAATGG
*
107029168 TAAAATTTATAATCTAATTCAAT
1 TAAAATTTATAATCTAATACAAT
107029191 CTCGTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (25 bp):
TAAAATTTATAATCTAATACAATGG
Found at i:107041401 original size:51 final size:51
Alignment explanation
Indices: 107041330--107041490 Score: 268
Period size: 51 Copynumber: 3.2 Consensus size: 51
107041320 CTGATCACAT
107041330 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
107041381 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACAACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * *
107041432 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
107041483 TTGTCACT
1 TTATCACT
107041491 GATCAGAAGT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 104 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:107045300 original size:18 final size:18
Alignment explanation
Indices: 107045279--107045338 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
107045269 AATCGGTTAA
*
107045279 TCAGTAATATTCATTTAT
1 TCAGTAATAGTCATTTAT
107045297 TCAGT-ATCAGTCATTTAT
1 TCAGTAAT-AGTCATTTAT
* * *
107045315 TCTGTAACAGTCAATTAT
1 TCAGTAATAGTCATTTAT
107045333 TCAGTA
1 TCAGTA
107045339 GCAGACAGTC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 2 0.06
18 32 0.91
19 1 0.03
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (18 bp):
TCAGTAATAGTCATTTAT
Found at i:107051273 original size:3 final size:3
Alignment explanation
Indices: 107051265--107051299 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
107051255 TTCTACTCCC
107051265 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
107051300 ATAGGAAGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:107051659 original size:34 final size:34
Alignment explanation
Indices: 107051620--107051686 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
107051610 AATATAAAAG
107051620 GTGCCCCTAATGCATTGAGA-ATCCTTAATTGAAT
1 GTGCCCCTAATGCATTGA-ATATCCTTAATTGAAT
*
107051654 GTGCCCCTATTGCATTGAATATCCTTAATTGAA
1 GTGCCCCTAATGCATTGAATATCCTTAATTGAA
107051687 GATTGAAGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 1 0.03
34 30 0.97
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.34
Consensus pattern (34 bp):
GTGCCCCTAATGCATTGAATATCCTTAATTGAAT
Found at i:107066505 original size:11 final size:11
Alignment explanation
Indices: 107066477--107066528 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
107066467 GCCCGAATCA
*
107066477 ACTATTTTGTT
1 ACTATTTTGCT
*
107066488 ATTATTTTGCT
1 ACTATTTTGCT
* * *
107066499 ACAATTTCGTT
1 ACTATTTTGCT
*
107066510 ACTATATTGCT
1 ACTATTTTGCT
107066521 ACTATTTT
1 ACTATTTT
107066529 ATTGTTATGG
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.23, C:0.13, G:0.08, T:0.56
Consensus pattern (11 bp):
ACTATTTTGCT
Found at i:107066505 original size:22 final size:22
Alignment explanation
Indices: 107066480--107066528 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
107066470 CGAATCAACT
* *
107066480 ATTTTGTTATTATTTTGCTACA
1 ATTTTGTTACTATATTGCTACA
* *
107066502 ATTTCGTTACTATATTGCTACT
1 ATTTTGTTACTATATTGCTACA
107066524 ATTTT
1 ATTTT
107066529 ATTGTTATGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.12, G:0.08, T:0.57
Consensus pattern (22 bp):
ATTTTGTTACTATATTGCTACA
Found at i:107067039 original size:2 final size:2
Alignment explanation
Indices: 107067032--107067065 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
107067022 CTTTAGTCTC
107067032 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107067066 TATTTTAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107067550 original size:9 final size:9
Alignment explanation
Indices: 107067538--107067597 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 9
107067528 GCAATTTAAG
107067538 TAATTTTTT
1 TAATTTTTT
107067547 TAATTTTTTT
1 TAA-TTTTTT
*
107067557 GTAA-TTTTA
1 -TAATTTTTT
107067566 TAAGTTTTTT
1 TAA-TTTTTT
* *
107067576 CAATTTTTAA
1 TAATTTTT-T
107067586 TAATTTTTT
1 TAATTTTTT
107067595 TAA
1 TAA
107067598 AATTTTTGTA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
8 3 0.08
9 15 0.38
10 19 0.47
11 3 0.08
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (9 bp):
TAATTTTTT
Found at i:107067555 original size:29 final size:29
Alignment explanation
Indices: 107067512--107067583 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
107067502 TTTCACAATT
**
107067512 TTTTTTTAAAATTTTAGCAATTTAAGTAA-
1 TTTTTTTAATTTTTTAGCAATTTAA-TAAG
* * *
107067541 TTTTTTTAATTTTTTTGTAATTTTATAAG
1 TTTTTTTAATTTTTTAGCAATTTAATAAG
*
107067570 TTTTTTCAATTTTT
1 TTTTTTTAATTTTT
107067584 AATAATTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
28 3 0.08
29 33 0.92
ACGTcount: A:0.28, C:0.03, G:0.06, T:0.64
Consensus pattern (29 bp):
TTTTTTTAATTTTTTAGCAATTTAATAAG
Found at i:107067560 original size:20 final size:20
Alignment explanation
Indices: 107067537--107067614 Score: 70
Period size: 20 Copynumber: 4.0 Consensus size: 20
107067527 AGCAATTTAA
*
107067537 GTAATTTTTTTAATTTTTTT
1 GTAATTTTTATAATTTTTTT
*
107067557 GTAA-TTTTATAAGTTTTTT
1 GTAATTTTTATAATTTTTTT
*
107067576 -CAATTTTTAATAATTTTTTT
1 GTAATTTTT-ATAATTTTTTT
** * *
107067596 AAAATTTTTGTACTTTTTT
1 GTAATTTTTATAATTTTTT
107067615 CATTTTTAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
18 2 0.04
19 17 0.35
20 22 0.46
21 7 0.15
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (20 bp):
GTAATTTTTATAATTTTTTT
Found at i:107067630 original size:48 final size:49
Alignment explanation
Indices: 107067532--107067633 Score: 118
Period size: 48 Copynumber: 2.1 Consensus size: 49
107067522 ATTTTAGCAA
** **
107067532 TTTAAGTAATTTTTTTAATTTTTTTGTAATTTTATAAGTTTTTTCAATT
1 TTTAAGTAATTTTTTTAAAATTTTTGTAATTTTATAAGTTTTTAAAATT
* * *
107067581 TTTAA-TAATTTTTTTAAAATTTTTGTACTTTTTTCA-TTTTTAAAGATT
1 TTTAAGTAATTTTTTTAAAATTTTTGTAATTTTATAAGTTTTTAAA-ATT
107067629 TTTAA
1 TTTAA
107067634 AAAAATTTTC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
47 6 0.13
48 34 0.76
49 5 0.11
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (49 bp):
TTTAAGTAATTTTTTTAAAATTTTTGTAATTTTATAAGTTTTTAAAATT
Found at i:107067761 original size:31 final size:31
Alignment explanation
Indices: 107067723--107067788 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 31
107067713 TAGTTCAAAG
*
107067723 GACTAAACT-AGAAACATCC-GATAATGTTAGA
1 GACTAAACTGAG-AACA-CCTGATAATATTAGA
*
107067754 GACTAAACTGAGAACACCTGATAATATTAGG
1 GACTAAACTGAGAACACCTGATAATATTAGA
107067785 GACT
1 GACT
107067789 GAAATTGATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 2 0.06
31 27 0.87
32 2 0.06
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (31 bp):
GACTAAACTGAGAACACCTGATAATATTAGA
Found at i:107073215 original size:10 final size:10
Alignment explanation
Indices: 107073200--107073258 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
107073190 AATTTTAGTT
107073200 TTTATCTTTA
1 TTTATCTTTA
*
107073210 TTTATCCTTA
1 TTTATCTTTA
107073220 TTTATCTTTA
1 TTTATCTTTA
*
107073230 ATTATCTTTA
1 TTTATCTTTA
107073240 TTTAT-TTGTA
1 TTTATCTT-TA
107073250 TTTATCTTT
1 TTTATCTTT
107073259 TAGAATTGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:107077308 original size:60 final size:59
Alignment explanation
Indices: 107077241--107077376 Score: 159
Period size: 60 Copynumber: 2.3 Consensus size: 59
107077231 CCAACTGTGT
*
107077241 TGATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATAC
1 TGATATGGGCAAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATAC
* * * *
107077301 TGATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCAAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATAC
*
107077361 TGATACGGGCTAAGGC
1 TGATATGGGC-AAGGC
107077377 TCAGTTAACA
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 1 0.02
60 52 0.80
61 12 0.18
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (59 bp):
TGATATGGGCAAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATAC
Found at i:107080245 original size:13 final size:13
Alignment explanation
Indices: 107080227--107080296 Score: 54
Period size: 13 Copynumber: 5.3 Consensus size: 13
107080217 AACCCAATTT
107080227 TTTTATTATTTTA
1 TTTTATTATTTTA
107080240 TTTTATT-TTATTA
1 TTTTATTATT-TTA
*
107080253 TTTTTTATTACTTTA
1 --TTTTATTATTTTA
** *
107080268 TTTTATCCTATTA
1 TTTTATTATTTTA
*
107080281 -TTTATTACTTTA
1 TTTTATTATTTTA
107080293 TTTT
1 TTTT
107080297 GGATATTAAT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
12 10 0.23
13 22 0.51
15 10 0.23
16 1 0.02
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTATTATTTTA
Found at i:107080250 original size:15 final size:15
Alignment explanation
Indices: 107080223--107080286 Score: 62
Period size: 13 Copynumber: 4.2 Consensus size: 15
107080213 AAGCAACCCA
*
107080223 ATTTTTTTATTATTTT
1 ATTTTATTATTA-TTT
107080239 ATTTTATT-TTA-TT
1 ATTTTATTATTATTT
107080252 ATTTT-TTATTACTTT
1 ATTTTATTATTA-TTT
107080267 ATTTTATCCTATTATTT
1 ATTTTAT--TATTATTT
107080284 ATT
1 ATT
107080287 ACTTTATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
12 2 0.05
13 10 0.24
15 10 0.24
16 8 0.20
17 6 0.15
18 5 0.12
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (15 bp):
ATTTTATTATTATTT
Found at i:107080250 original size:18 final size:18
Alignment explanation
Indices: 107080227--107080269 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
107080217 AACCCAATTT
107080227 TTTTATTATTTTATT-TTA
1 TTTTATTATTTT-TTATTA
107080245 TTTTATTATTTTTTATTA
1 TTTTATTATTTTTTATTA
*
107080263 CTTTATT
1 TTTTATT
107080270 TTATCCTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 2 0.09
18 21 0.91
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTATTATTTTTTATTA
Found at i:107080267 original size:28 final size:28
Alignment explanation
Indices: 107080225--107080296 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
107080215 GCAACCCAAT
* **
107080225 TTTTTTATTATTTTATTTTATTTTATTA
1 TTTTTTATTACTTTATTTTATCCTATTA
107080253 TTTTTTATTACTTTATTTTATCCTATTA
1 TTTTTTATTACTTTATTTTATCCTATTA
107080281 ---TTTATTACTTTATTTT
1 TTTTTTATTACTTTATTTT
107080297 GGATATTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
25 16 0.39
28 25 0.61
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (28 bp):
TTTTTTATTACTTTATTTTATCCTATTA
Found at i:107080279 original size:25 final size:23
Alignment explanation
Indices: 107080223--107080296 Score: 89
Period size: 25 Copynumber: 3.2 Consensus size: 23
107080213 AAGCAACCCA
* *
107080223 ATTTTTTTATTA-TT-TTATTTT
1 ATTTTATTATTATTTATTACTTT
*
107080244 ATTTTATTATTTTTTATTACTTT
1 ATTTTATTATTATTTATTACTTT
107080267 ATTTTATCCTATTATTTATTACTTT
1 ATTTTAT--TATTATTTATTACTTT
107080292 ATTTT
1 ATTTT
107080297 GGATATTAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.22
22 2 0.04
23 13 0.29
25 20 0.44
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (23 bp):
ATTTTATTATTATTTATTACTTT
Found at i:107081638 original size:10 final size:11
Alignment explanation
Indices: 107081612--107081637 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
107081602 TAGTAATGAT
107081612 AAAAAGAAAAA
1 AAAAAGAAAAA
107081623 AAAAAGAAAAA
1 AAAAAGAAAAA
107081634 AAAA
1 AAAA
107081638 GTGATGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:107082282 original size:10 final size:10
Alignment explanation
Indices: 107082267--107082325 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
107082257 AATTTTAGTT
107082267 TTTATCTTTA
1 TTTATCTTTA
*
107082277 TTTATCCTTA
1 TTTATCTTTA
107082287 TTTATCTTTA
1 TTTATCTTTA
*
107082297 ATTATCTTTA
1 TTTATCTTTA
107082307 TTTAT-TTGTA
1 TTTATCTT-TA
107082317 TTTATCTTT
1 TTTATCTTT
107082326 TAGAATTGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:107089245 original size:112 final size:111
Alignment explanation
Indices: 107089100--107089700 Score: 867
Period size: 111 Copynumber: 5.4 Consensus size: 111
107089090 AATACGAGAT
* *
107089100 AAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAGT-CAACCAAAAAAAAATTCGAA
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTCGAA
107089164 TTTTTTTCAAAAAATTTTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
66 TTTTTTTCAAAAAA--TTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
* * *
107089212 AAAAAAAAATTTAGGTACTGGCCTGTCAATGGCCGGCACCCAGTACAA-CAAAAAAAAATT-GAT
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTCGAA
*
107089275 TTTTTTTCCAAAAAAAATTTTTTTTGCTCTCTAAAAATACGAGTTTTA
66 TTTTTTT-C-AAAAAATTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
* *
107089323 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCTAGTACAACCAAAAAAAAAATTTGA
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACC-AAAAAAAAATTCGA
*
107089388 AATTTTTTCAAAAAAAATTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
65 ATTTTTTTC--AAAAAATTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
*
107089437 AAAAAAAAATTTGAGTGCTGGCCTGT-AATGGCCGGCACCCAGTACAACCCAAAAAAAAA-TCGA
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA-CCAAAAAAAAATTCGA
* **
107089500 ATTTTTTTTTAAAAAA-AATTTTTTGCTCTCTAAAAATACGAGTTTTA
65 A-TTTTTTTCAAAAAATTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
* *
107089547 AAAAAAATATTTTTGGGTGCTGGCCTGTCAATTGCCGGCACCCAGTACAACCAAAAAAAAATTCG
1 AAAAAAA-A-ATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTCG
*
107089612 ATTTTTTTTC--AAAATTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
64 AATTTTTTTCAAAAAATTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
*
107089658 AAAATAAAAATTTTTGGGTGCTGGCCTGTCAATAGCCGGCACC
1 AAAA-AAAAA--TTTGGGTGCTGGCCTGTCAATGGCCGGCACC
107089701 AAACCTTATA
Statistics
Matches: 444, Mismatches: 28, Indels: 34
0.88 0.06 0.07
Matches are distributed among these distances:
110 40 0.09
111 126 0.28
112 125 0.28
113 80 0.18
114 73 0.16
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (111 bp):
AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTCGAA
TTTTTTTCAAAAAATTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
Found at i:107089330 original size:113 final size:111
Alignment explanation
Indices: 107089100--107089700 Score: 867
Period size: 112 Copynumber: 5.4 Consensus size: 111
107089090 AATACGAGAT
* * *
107089100 AAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAGT-CAACCAAAAAAAAATTCGAA
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATT-GAT
**
107089164 TTTTTTTCAAAAAATTTTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
65 TTTTTTTCAAAAAA-AATTTTTTTTGCTCTCTAAAAATACGAGTTTTA
* *
107089212 AAAAAAAAATTTAGGTACTGGCCTGTCAATGGCCGGCACCCAGTACAA-CAAAAAAAAATTGATT
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTGATT
107089276 TTTTTTCCAAAAAAAATTTTTTTTGCTCTCTAAAAATACGAGTTTTA
66 TTTTTT-CAAAAAAAATTTTTTTTGCTCTCTAAAAATACGAGTTTTA
*
107089323 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCTAGTACAACCAAAAAAAAAATTTGA
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACC-AAAAAAAAA-TTGA
**
107089388 AATTTTTTCAAAAAAAATTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
64 TTTTTTTTCAAAAAAAA-TTTTTTTTGCTCTCTAAAAATACGAGTTTTA
* *
107089437 AAAAAAAAATTTGAGTGCTGGCCTGT-AATGGCCGGCACCCAGTACAACCCAAAAAAAAATCGAA
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA-CCAAAAAAAAATTG-A
*
107089501 TTTTTTTTTAAAAAAAA--TTTTTTGCTCTCTAAAAATACGAGTTTTA
64 TTTTTTTTCAAAAAAAATTTTTTTTGCTCTCTAAAAATACGAGTTTTA
* *
107089547 AAAAAAATATTTTTGGGTGCTGGCCTGTCAATTGCCGGCACCCAGTACAACCAAAAAAAAATTCG
1 AAAAAAA-A-ATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATT-G
*
107089612 ATTTTTTTTC---AAAATTTTTTTTTGCTCTCTAAAAATACGAGTTTTA
63 ATTTTTTTTCAAAAAAAATTTTTTTTGCTCTCTAAAAATACGAGTTTTA
*
107089658 AAAATAAAAATTTTTGGGTGCTGGCCTGTCAATAGCCGGCACC
1 AAAA-AAAAA--TTTGGGTGCTGGCCTGTCAATGGCCGGCACC
107089701 AAACCTTATA
Statistics
Matches: 446, Mismatches: 26, Indels: 34
0.88 0.05 0.07
Matches are distributed among these distances:
109 4 0.01
110 36 0.08
111 120 0.27
112 132 0.30
113 86 0.19
114 68 0.15
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (111 bp):
AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTGATT
TTTTTTCAAAAAAAATTTTTTTTGCTCTCTAAAAATACGAGTTTTA
Found at i:107090242 original size:21 final size:21
Alignment explanation
Indices: 107090216--107090258 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
107090206 AGAATGTTTG
107090216 TATTTTTTTATATCTTTAAAT
1 TATTTTTTTATATCTTTAAAT
107090237 TATTTTTTTATATCTTTAAAT
1 TATTTTTTTATATCTTTAAAT
107090258 T
1 T
107090259 TAATATAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (21 bp):
TATTTTTTTATATCTTTAAAT
Found at i:107093094 original size:112 final size:112
Alignment explanation
Indices: 107092565--107093101 Score: 710
Period size: 112 Copynumber: 4.8 Consensus size: 112
107092555 TCATAAATTT
** * *
107092565 GGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAATTTTTTTTTAACACTCATATTTTTAGAGA
1 GGTGCCGGCCATTGACAGGCCAGCACCC--AAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGA
***** *
107092630 GCAAAAAAAAAATTTTGAAAAAAATTCGAAATTTTTTTTTTGGGTTGTACTG
64 GCAAAAATTTTTTTTTGAAAAAAATTC-AAA-ATTTTTTTT-GGTTGTACTG
107092682 GGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTTAAAACTCGTATTTTTAGAGAG
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAAA-TTTTTTTTTTTAAAACTCGTATTTTTAGAGAG
****
107092747 CAAAAA--AAAATTTGAAAAAAATTCAAAATTTTTTTTGGGTTGTACTG
65 CAAAAATTTTTTTTTGAAAAAAATTCAAAATTTTTTTT-GGTTGTACTG
*
107092794 GGTGCCGGCCATTGACAGGCTAGCACCCCAAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGAG
1 GGTGCCGGCCATTGACAGGCCAGCA-CCCAAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGAG
* *
107092859 CAAAAAAATTTTTTTTTGAAAAAAATT-AGAATTTTTTTTTGTTGTACTG
65 C--AAAAATTTTTTTTTGAAAAAAATTCAAAATTTTTTTTGGTTGTACTG
*
107092908 GGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGACC
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGAGC
107092973 AAAAATTTTTTTTTTGAAAAAAA-TCAAAATTTTTTTT-GTTGTACTG
66 AAAAA-TTTTTTTTTGAAAAAAATTCAAAATTTTTTTTGGTTGTACTG
* * * * *
107093019 GGTGTCGGCTATTGACAGGCCAGCACCCAAATTTTTTTTTTTTTTAAACTCATATTTTTAGAGAG
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAA-ATTTTTTTTTTTAAAACTCGTATTTTTAGAGAG
107093084 C-AAAATTTTTTTTT-AAAA
65 CAAAAATTTTTTTTTGAAAA
107093102 CTCGTATTTT
Statistics
Matches: 389, Mismatches: 22, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
109 4 0.01
110 9 0.02
111 48 0.12
112 134 0.34
113 49 0.13
114 55 0.14
115 15 0.04
116 47 0.12
117 28 0.07
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (112 bp):
GGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGAGC
AAAAATTTTTTTTTGAAAAAAATTCAAAATTTTTTTTGGTTGTACTG
Found at i:107093103 original size:35 final size:36
Alignment explanation
Indices: 107093054--107093133 Score: 117
Period size: 35 Copynumber: 2.2 Consensus size: 36
107093044 CCCAAATTTT
* *
107093054 TTTTTTTTTTAAACTCATATTTTTAGAGAG-CAAAA
1 TTTTTTTTTAAAACTCATATTTTTAGAGAGAAAAAA
*
107093089 TTTTTTTTTAAAACTCGTATTTTTAGAGAGAAAAAA
1 TTTTTTTTTAAAACTCATATTTTTAGAGAGAAAAAA
*
107093125 CTTTTTTTT
1 TTTTTTTTT
107093134 GTTGTACTGG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
35 28 0.70
36 12 0.30
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.51
Consensus pattern (36 bp):
TTTTTTTTTAAAACTCATATTTTTAGAGAGAAAAAA
Found at i:107105285 original size:17 final size:17
Alignment explanation
Indices: 107105263--107105296 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
107105253 ATCCACTAAT
*
107105263 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
107105280 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
107105297 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:107109914 original size:17 final size:17
Alignment explanation
Indices: 107109892--107109925 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
107109882 ATCCACTAAT
*
107109892 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
107109909 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
107109926 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:107112832 original size:29 final size:29
Alignment explanation
Indices: 107112795--107112853 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
107112785 ATTTATTTTG
*
107112795 TTTTATTATTTAAATAATTGTTGTTATCC
1 TTTTATTATTTAAATAATTATTGTTATCC
* *
107112824 TTTTGTTATTTGAATAATTATTGTTATCC
1 TTTTATTATTTAAATAATTATTGTTATCC
107112853 T
1 T
107112854 ATTCAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.25, C:0.07, G:0.08, T:0.59
Consensus pattern (29 bp):
TTTTATTATTTAAATAATTATTGTTATCC
Found at i:107117073 original size:16 final size:16
Alignment explanation
Indices: 107117052--107117084 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
107117042 AAAAATATAA
107117052 CGGGCTGAATCGGGCT
1 CGGGCTGAATCGGGCT
107117068 CGGGCTGAATCGGGCT
1 CGGGCTGAATCGGGCT
107117084 C
1 C
107117085 AGGCGGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.27, G:0.42, T:0.18
Consensus pattern (16 bp):
CGGGCTGAATCGGGCT
Found at i:107117093 original size:16 final size:16
Alignment explanation
Indices: 107117058--107117093 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
107117048 ATAACGGGCT
* *
107117058 GAATCGGGCTCGGGCT
1 GAATCGGGCTCAGGCG
107117074 GAATCGGGCTCAGGCG
1 GAATCGGGCTCAGGCG
107117090 GAAT
1 GAAT
107117094 TTAAGTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.19, C:0.22, G:0.42, T:0.17
Consensus pattern (16 bp):
GAATCGGGCTCAGGCG
Found at i:107130574 original size:17 final size:19
Alignment explanation
Indices: 107130552--107130596 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
107130542 TATTTTTTCA
107130552 AAAATATTTA-TTT-AAAT
1 AAAATATTTATTTTAAAAT
*
107130569 AAAATACTTATTTTAAAAT
1 AAAATATTTATTTTAAAAT
*
107130588 AATATATTT
1 AAAATATTT
107130597 TAAGATACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 9 0.39
18 3 0.13
19 11 0.48
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
AAAATATTTATTTTAAAAT
Found at i:107130587 original size:14 final size:14
Alignment explanation
Indices: 107130568--107130606 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
107130558 TTTATTTAAA
107130568 TAAAATACTTATTT
1 TAAAATACTTATTT
*
107130582 TAAAATAATATATTT
1 TAAAATACT-TATTT
*
107130597 TAAGATACTT
1 TAAAATACTT
107130607 TAATCTTGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (14 bp):
TAAAATACTTATTT
Found at i:107131858 original size:256 final size:258
Alignment explanation
Indices: 107131402--107131918 Score: 849
Period size: 256 Copynumber: 2.0 Consensus size: 258
107131392 TTCTCATTCT
*
107131402 CTTTAACAGTTTAGTTTCTCTCTCTCTCTTTTTTTTTCATGAAACAGCTTTAAACGTTAAGAATC
1 CTTTAACAGTTTAGTTTCTCTCTCTCTCTTTTTTTTTCACGAAACAGCTTTAAACGTTAAGAATC
*
107131467 TACGAATCAAAATACAAATAACTTTCTACTTTGATATTTGACATTAACTATCAGATCAATTTGGA
66 TACGAATCAAAATACAAATAACTTTCTACTTCGATATTTGACATTAACTATCAGATCAATTTGGA
* *
107131532 TCTAAGGTATGTTCTTCTACTCATCGATGAGAACTAATCTACCATACTGATCGTTTAGTCGTTGC
131 TCTAAGGTATGTTCTTCTACTCATCGATAAGAACTAATCCACCATACTGATCGTTTAGTCGTTGC
*
107131597 TTGGAGTTCGTTAATCAGACTTTAAAAGAAAAA-CATTAACAGTAAAAAGACTTAAATAAAAA
196 TTGGAGTTCGTTAATCAAACTTTAAAAGAAAAAGCATTAACAGTAAAAAGACTTAAATAAAAA
* *
107131659 CTTTAACAGTTTAGTTTCTCTCTCTCTC-TTTTTTTTCACGAAATAGCTTTAAATGTTAAGAATC
1 CTTTAACAGTTTAGTTTCTCTCTCTCTCTTTTTTTTTCACGAAACAGCTTTAAACGTTAAGAATC
* * * **
107131723 TATGAATCAAAATGCAAATAACTTTCTACTTCGATATTTGACATTAACTATCAGGTTGATTTGGA
66 TACGAATCAAAATACAAATAACTTTCTACTTCGATATTTGACATTAACTATCAGATCAATTTGGA
* ** * *
107131788 TCTAAGGTATGTTCTTCTACTCATTGATAAGTGCTAATCCACCATACTGATTGTTTAGTTGTTGC
131 TCTAAGGTATGTTCTTCTACTCATCGATAAGAACTAATCCACCATACTGATCGTTTAGTCGTTGC
* *
107131853 TTGGAGTTTGTTAATCAAACTTTAAAAGAAAAAGCATTAACAGTCAAAAGACTTAAATAAAAA
196 TTGGAGTTCGTTAATCAAACTTTAAAAGAAAAAGCATTAACAGTAAAAAGACTTAAATAAAAA
107131916 CTT
1 CTT
107131919 CTGGTTAGTT
Statistics
Matches: 240, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
256 181 0.75
257 59 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (258 bp):
CTTTAACAGTTTAGTTTCTCTCTCTCTCTTTTTTTTTCACGAAACAGCTTTAAACGTTAAGAATC
TACGAATCAAAATACAAATAACTTTCTACTTCGATATTTGACATTAACTATCAGATCAATTTGGA
TCTAAGGTATGTTCTTCTACTCATCGATAAGAACTAATCCACCATACTGATCGTTTAGTCGTTGC
TTGGAGTTCGTTAATCAAACTTTAAAAGAAAAAGCATTAACAGTAAAAAGACTTAAATAAAAA
Found at i:107133127 original size:13 final size:13
Alignment explanation
Indices: 107133109--107133134 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
107133099 ATATCCGAAA
107133109 AATATTAAAAATT
1 AATATTAAAAATT
107133122 AATATTAAAAATT
1 AATATTAAAAATT
107133135 TTGAAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATTAAAAATT
Found at i:107135564 original size:19 final size:20
Alignment explanation
Indices: 107135534--107135578 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
107135524 TTAAAGCTTT
107135534 TATTTTTAATA-TACTTAAAA
1 TATTTTTAATATTA-TTAAAA
*
107135554 TATTTTT-ATATTATTAAAT
1 TATTTTTAATATTATTAAAA
107135573 TATTTT
1 TATTTT
107135579 ATTATCTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTTTTAATATTATTAAAA
Found at i:107137231 original size:12 final size:12
Alignment explanation
Indices: 107137214--107137252 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
107137204 CCGGATGCTG
107137214 TCAAGCTTGAGC
1 TCAAGCTTGAGC
*
107137226 TCAAGCTCGAGC
1 TCAAGCTTGAGC
*
107137238 TCGAGCTTGA-C
1 TCAAGCTTGAGC
107137249 TCAA
1 TCAA
107137253 AATTCAGAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (12 bp):
TCAAGCTTGAGC
Found at i:107141283 original size:23 final size:24
Alignment explanation
Indices: 107141257--107141314 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
107141247 GTTATATCAA
*
107141257 TTTAAATTAATT-CAGA-GATAAAT
1 TTTAAATTAATTGCAGACCAT-AAT
*
107141280 TTTAAATTGACTTGCAGACCATAAT
1 TTTAAATT-AATTGCAGACCATAAT
107141305 TTTAAATTAA
1 TTTAAATTAA
107141315 AACAAAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 8 0.28
24 4 0.14
25 15 0.52
26 2 0.07
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (24 bp):
TTTAAATTAATTGCAGACCATAAT
Found at i:107145771 original size:3 final size:3
Alignment explanation
Indices: 107145763--107145802 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
107145753 AATATACGAA
* *
107145763 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT GAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
107145803 TTATACCTCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:107147183 original size:14 final size:15
Alignment explanation
Indices: 107147164--107147202 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
107147154 CTTAACAATT
*
107147164 AATTAAAATATT-AA
1 AATTAAAAAATTAAA
107147178 AATTAAAAAATTAAA
1 AATTAAAAAATTAAA
107147193 AATTAAAAAA
1 AATTAAAAAA
107147203 ATAATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AATTAAAAAATTAAA
Found at i:107147193 original size:7 final size:7
Alignment explanation
Indices: 107147164--107147201 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
107147154 CTTAACAATT
107147164 AATTAAA
1 AATTAAA
107147171 ATATT-AA
1 A-ATTAAA
107147178 AATTAAAA
1 AATT-AAA
107147186 AATTAAA
1 AATTAAA
107147193 AATTAAA
1 AATTAAA
107147200 AA
1 AA
107147202 AATAATTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
6 3 0.11
7 16 0.57
8 9 0.32
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AATTAAA
Found at i:107148189 original size:21 final size:21
Alignment explanation
Indices: 107148154--107148194 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
107148144 CATTTCACTC
107148154 ATTTCAACTCAACTCGAATTTT
1 ATTTCAACTCAACTC-AATTTT
*
107148176 ATTTC-ACTCGACTCAATTT
1 ATTTCAACTCAACTCAATTT
107148195 GAAAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 8 0.44
22 5 0.28
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.41
Consensus pattern (21 bp):
ATTTCAACTCAACTCAATTTT
Found at i:107149840 original size:24 final size:24
Alignment explanation
Indices: 107149813--107149868 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
107149803 TATATTCTAA
* * *
107149813 TTATATTTTATAAATAATTAATAT
1 TTATATTTTAAAAACAATTAAAAT
*
107149837 TTAT-TATTTAAAAACATTTAAAAT
1 TTATAT-TTTAAAAACAATTAAAAT
107149861 TTATATTT
1 TTATATTT
107149869 CATATGTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.04
24 24 0.92
25 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
TTATATTTTAAAAACAATTAAAAT
Found at i:107151043 original size:30 final size:30
Alignment explanation
Indices: 107151007--107151069 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
107150997 ACTTAACGAG
107151007 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
107151037 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
107151067 CAA
1 CAA
107151070 TAAAACAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:107152564 original size:27 final size:26
Alignment explanation
Indices: 107152509--107152564 Score: 60
Period size: 27 Copynumber: 2.1 Consensus size: 26
107152499 TTCATGTTTG
* * *
107152509 ATATTTACATAATTTTATGGAATACA
1 ATATTTACATAATTTAATGCAATAAA
107152535 ATATTTACATAAATTTAAT-CAACTAAA
1 ATATTTACAT-AATTTAATGCAA-TAAA
107152562 ATA
1 ATA
107152565 ATCAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (26 bp):
ATATTTACATAATTTAATGCAATAAA
Found at i:107153902 original size:4 final size:4
Alignment explanation
Indices: 107153895--107153922 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
107153885 TATATATATA
107153895 TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG
107153923 AACAAAGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:107166579 original size:17 final size:19
Alignment explanation
Indices: 107166554--107166595 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
107166544 TAGATTGAAT
*
107166554 TTTTTAAATAG-TTATA-A
1 TTTTAAAATAGTTTATATA
107166571 TTTTAAAATAGTTTATATA
1 TTTTAAAATAGTTTATATA
107166590 TTTTAA
1 TTTTAA
107166596 TTAAATTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.45
18 5 0.23
19 7 0.32
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTTAAAATAGTTTATATA
Found at i:107167222 original size:19 final size:19
Alignment explanation
Indices: 107167200--107167249 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
107167190 TGTTAAAAAC
107167200 TTTTTAAAATTACTTTAT-A
1 TTTTTAAAATTA-TTTATAA
*
107167219 -TTTTAAAATTATTTTTAA
1 TTTTTAAAATTATTTATAA
*
107167237 TTTTTAAATTTAT
1 TTTTTAAAATTAT
107167250 GCTTGCCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 4 0.15
18 12 0.44
19 11 0.41
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTTAAAATTATTTATAA
Found at i:107172832 original size:23 final size:23
Alignment explanation
Indices: 107172806--107172850 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
107172796 TTTTTAAAGA
*
107172806 ATTTTCTATAAAATAA-AATAATT
1 ATTTT-TAAAAAATAATAATAATT
107172829 ATTTTTAAAAAATAATAATAAT
1 ATTTTTAAAAAATAATAATAAT
107172851 AAACAGGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
ATTTTTAAAAAATAATAATAATT
Found at i:107175499 original size:23 final size:23
Alignment explanation
Indices: 107175469--107175512 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
107175459 ATTAACACCG
*
107175469 AAAATTAA-AATATGGAATATATT
1 AAAATTAATAAAATGG-ATATATT
107175492 AAAATTAATAAAATGGATATA
1 AAAATTAATAAAATGGATATA
107175513 AATTATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (23 bp):
AAAATTAATAAAATGGATATATT
Found at i:107175541 original size:17 final size:19
Alignment explanation
Indices: 107175514--107175549 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
107175504 ATGGATATAA
107175514 ATTATATTTAAA-AAATTT
1 ATTATATTTAAAGAAATTT
107175532 ATTA-ATTTAAAGAAATTT
1 ATTATATTTAAAGAAATTT
107175550 TAAAACGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
ATTATATTTAAAGAAATTT
Found at i:107177529 original size:21 final size:22
Alignment explanation
Indices: 107177492--107177545 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
107177482 AAATTGTGAT
* *
107177492 AAAAATAT-AACATTATATA-A
1 AAAAATATAAAAACTATATACA
*
107177512 AAAAATTTAAAAACTATATACA
1 AAAAATATAAAAACTATATACA
*
107177534 ATAAATATAAAA
1 AAAAATATAAAA
107177546 TATCTTAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 7 0.26
21 9 0.33
22 11 0.41
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (22 bp):
AAAAATATAAAAACTATATACA
Found at i:107178865 original size:2 final size:2
Alignment explanation
Indices: 107178858--107178884 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107178848 AGATTTAATA
107178858 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
107178885 AAGGGAGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107182696 original size:18 final size:18
Alignment explanation
Indices: 107182673--107182708 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
107182663 TTTTACTTTG
107182673 GCCCATTTAAGTTTATAA
1 GCCCATTTAAGTTTATAA
107182691 GCCCATTTAAGTTTATAA
1 GCCCATTTAAGTTTATAA
107182709 ATCAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (18 bp):
GCCCATTTAAGTTTATAA
Found at i:107184304 original size:16 final size:16
Alignment explanation
Indices: 107184280--107184312 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
107184270 TCAATAAAGG
107184280 TTTGCTTTTTTTTTGT
1 TTTGCTTTTTTTTTGT
*
107184296 TTTGTTTTTTTTTTGT
1 TTTGCTTTTTTTTTGT
107184312 T
1 T
107184313 AATATAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (16 bp):
TTTGCTTTTTTTTTGT
Found at i:107188217 original size:15 final size:15
Alignment explanation
Indices: 107188197--107188226 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
107188187 TATGTATTTT
107188197 TTTAATTACTAATTA
1 TTTAATTACTAATTA
107188212 TTTAATTACTAATTA
1 TTTAATTACTAATTA
107188227 ACCTCTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTAATTACTAATTA
Found at i:107193380 original size:70 final size:70
Alignment explanation
Indices: 107193267--107193407 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
107193257 GAACCAAACC
*
107193267 ATTTACATCTCCGATTTCTCGACCTAGGCTATATTTCCATTATTGTTTTTAAACAAATCAAACAG
1 ATTTACATCTCCCATTTCTCGACCTAGGCTATATTTCCATTATTGTTTTTAAACAAATCAAACAG
107193332 TATCA
66 TATCA
107193337 ATTTACATCTCCCATTTCTCGACCTAGGCTATATTTCCATTATTGTTTTTAAACAAATCAAACAG
1 ATTTACATCTCCCATTTCTCGACCTAGGCTATATTTCCATTATTGTTTTTAAACAAATCAAACAG
107193402 TATCA
66 TATCA
107193407 A
1 A
107193408 AAGCAACTCA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (70 bp):
ATTTACATCTCCCATTTCTCGACCTAGGCTATATTTCCATTATTGTTTTTAAACAAATCAAACAG
TATCA
Found at i:107195977 original size:12 final size:13
Alignment explanation
Indices: 107195937--107195977 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
107195927 GTTATTATTT
107195937 AATAATAATAAT-
1 AATAATAATAATG
107195949 AATAATAATAAACTG
1 AATAATAAT-AA-TG
107195964 AA-AATAATAATG
1 AATAATAATAATG
107195976 AA
1 AA
107195978 GGAAGAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 13 0.50
13 4 0.15
14 7 0.27
15 2 0.08
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (13 bp):
AATAATAATAATG
Found at i:107196083 original size:17 final size:18
Alignment explanation
Indices: 107196053--107196086 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
107196043 TTGTTAATAC
*
107196053 TTTTTTTCTCAAATTTAT
1 TTTTTTTATCAAATTTAT
107196071 TTTTTTTAT-AAATTTA
1 TTTTTTTATCAAATTTA
107196087 CAAATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTTTATCAAATTTAT
Found at i:107198879 original size:9 final size:8
Alignment explanation
Indices: 107198860--107198893 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
107198850 TTGGTATCTC
107198860 ATTAAAAA
1 ATTAAAAA
107198868 ATTAATAAA
1 ATTAA-AAA
107198877 ATTAAAAAA
1 ATT-AAAAA
107198886 ATTAAAAA
1 ATTAAAAA
107198894 TAAAATTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 10 0.42
9 12 0.50
10 2 0.08
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
ATTAAAAA
Found at i:107203447 original size:80 final size:80
Alignment explanation
Indices: 107203314--107203475 Score: 324
Period size: 80 Copynumber: 2.0 Consensus size: 80
107203304 TCAAAGGTTA
107203314 CTTAATAACCATAATAAGCCTTGGGCTTTTGGTTGGCATGGAAATCATCAGGCCAAAGAAAAGCA
1 CTTAATAACCATAATAAGCCTTGGGCTTTTGGTTGGCATGGAAATCATCAGGCCAAAGAAAAGCA
107203379 CCCATTGCAAACTTT
66 CCCATTGCAAACTTT
107203394 CTTAATAACCATAATAAGCCTTGGGCTTTTGGTTGGCATGGAAATCATCAGGCCAAAGAAAAGCA
1 CTTAATAACCATAATAAGCCTTGGGCTTTTGGTTGGCATGGAAATCATCAGGCCAAAGAAAAGCA
107203459 CCCATTGCAAACTTT
66 CCCATTGCAAACTTT
107203474 CT
1 CT
107203476 CTTATAATCT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (80 bp):
CTTAATAACCATAATAAGCCTTGGGCTTTTGGTTGGCATGGAAATCATCAGGCCAAAGAAAAGCA
CCCATTGCAAACTTT
Found at i:107236122 original size:16 final size:16
Alignment explanation
Indices: 107236097--107236127 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
107236087 TACATTGTTA
107236097 ATATAAAATATATATT
1 ATATAAAATATATATT
*
107236113 ATATACAATATATAT
1 ATATAAAATATATAT
107236128 AATTTATTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAAAATATATATT
Found at i:107241092 original size:24 final size:24
Alignment explanation
Indices: 107241030--107241094 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 24
107241020 TGTTATTATT
*
107241030 ATTTATTATTATTTTTATATTTAAT
1 ATTTA-TATTATTTTTATATTTAAA
*
107241055 ATTGA-ATTTATTTTTATATTTAAA
1 ATTTATA-TTATTTTTATATTTAAA
*
107241079 ATTTATGATTTTTTTT
1 ATTTAT-ATTATTTTT
107241095 TAATAATATC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
23 1 0.03
24 20 0.61
25 11 0.33
26 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (24 bp):
ATTTATATTATTTTTATATTTAAA
Found at i:107242574 original size:23 final size:23
Alignment explanation
Indices: 107242544--107242590 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
107242534 TCCCAATATG
107242544 AATGGAAAAGTTAATGTCGGTTA
1 AATGGAAAAGTTAATGTCGGTTA
107242567 AATGGAAAAGTTAATGTCGGTTA
1 AATGGAAAAGTTAATGTCGGTTA
107242590 A
1 A
107242591 CTTAACTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.26, T:0.30
Consensus pattern (23 bp):
AATGGAAAAGTTAATGTCGGTTA
Found at i:107243843 original size:23 final size:23
Alignment explanation
Indices: 107243815--107243860 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
107243805 TAAGTCCTTG
107243815 TATTTTTT-TATATTTG-AAATT
1 TATTTTTTCTATATTTGAAAATT
*
107243836 TATTTTTTCTATTTTTGAAAATT
1 TATTTTTTCTATATTTGAAAATT
107243859 TA
1 TA
107243861 AAATTTAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.36
22 7 0.32
23 7 0.32
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.65
Consensus pattern (23 bp):
TATTTTTTCTATATTTGAAAATT
Found at i:107244779 original size:19 final size:19
Alignment explanation
Indices: 107244755--107244792 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
107244745 TTCCAAAAAG
107244755 AAAAAAAAAATACTTTTTT
1 AAAAAAAAAATACTTTTTT
* *
107244774 AAAAAAATAATTCTTTTTT
1 AAAAAAAAAATACTTTTTT
107244793 CTTGTTGGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAAAAAAAATACTTTTTT
Found at i:107246213 original size:131 final size:133
Alignment explanation
Indices: 107245978--107246217 Score: 333
Period size: 131 Copynumber: 1.8 Consensus size: 133
107245968 TCAGCATGAA
* * *
107245978 TATGTATGTATGTCCTGCATTCATGTTCGTTTGCAGATTTGAACATTAGTATGGTGATATGACCT
1 TATGTATGTATGTCATGCATCCATGTTCGTTTGCAGATTTGAACATGAGTATGGTGATATGACCT
* **
107246043 TCTAAAGATTACATGGCAATTCGCTCATTATGCAATTTTCATCATCATCATCATGATACATGAAT
66 TCTAAAGATTACATGGCAATACAATCATTATGCAATTTTCATCATCATCATCATGATACATGAAT
107246108 CTT
131 CTT
* * *
107246111 TATGTATGTATGT-ATGACATCCATGTTTG-TTGCATATTTGGACATGA-TATGGTGATATGACC
1 TATGTATGTATGTCATG-CATCCATGTTCGTTTGCAGATTTGAACATGAGTATGGTGATATGACC
* * * *
107246173 TTCTAAATATTACATGGCAATACAATCATTCTGTAGTTTTCATCA
65 TTCTAAAGATTACATGGCAATACAATCATTATGCAATTTTCATCA
107246218 GCAGCAGCAT
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
131 53 0.57
132 17 0.18
133 23 0.25
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (133 bp):
TATGTATGTATGTCATGCATCCATGTTCGTTTGCAGATTTGAACATGAGTATGGTGATATGACCT
TCTAAAGATTACATGGCAATACAATCATTATGCAATTTTCATCATCATCATCATGATACATGAAT
CTT
Found at i:107246276 original size:4 final size:4
Alignment explanation
Indices: 107246267--107246298 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
107246257 TCAGCATGAA
107246267 TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG
107246299 AATGACATCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:107253901 original size:38 final size:38
Alignment explanation
Indices: 107253859--107253937 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
107253849 CAGCTGAAAG
*
107253859 AAAACAAAAATTTTTCGAAATTAAGTACTAATAGATAC
1 AAAACAAAAAATTTTCGAAATTAAGTACTAATAGATAC
*
107253897 AAAACAAAAAATTTTCGAAATTAGGTACTAATAGATAC
1 AAAACAAAAAATTTTCGAAATTAAGTACTAATAGATAC
107253935 AAA
1 AAA
107253938 TTTTCACATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.54, C:0.10, G:0.09, T:0.27
Consensus pattern (38 bp):
AAAACAAAAAATTTTCGAAATTAAGTACTAATAGATAC
Found at i:107254892 original size:18 final size:17
Alignment explanation
Indices: 107254848--107254892 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
107254838 TAATTGAGAA
107254848 AAAATAATTATT-ATTTT
1 AAAATAA-TATTAATTTT
107254865 -AAAT-ATATTAATTTAT
1 AAAATAATATTAATTT-T
107254881 AAAATAATATTA
1 AAAATAATATTA
107254893 GATAAGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
14 4 0.17
15 5 0.21
16 5 0.21
17 4 0.17
18 6 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AAAATAATATTAATTTT
Found at i:107257391 original size:52 final size:53
Alignment explanation
Indices: 107257257--107257413 Score: 167
Period size: 53 Copynumber: 2.9 Consensus size: 53
107257247 TAAAAAATAT
* * *
107257257 TTTTCTTATTCAATTTG-AGTGCCTCCAAATAATATGGCGGCACCAAAAAATAAA
1 TTTT-TTATTCAATTTGCAAT-CCTCCAAATAATATGGTGGCACCAAAATATAAA
* * *
107257311 TTTTTTATTCAATTTGGAATCCTCCAAATAATGTGGTGGCATCAAAATAT-AA
1 TTTTTTATTCAATTTGCAATCCTCCAAATAATATGGTGGCACCAAAATATAAA
* * * *
107257363 TTTTTTATTTC-ATTTTCATTCCTTCAAATAACATGGTGGCACCACAAATAT
1 TTTTTTA-TTCAATTTGCAATCCTCCAAATAATATGGTGGCACCA-AAATAT
107257414 TAAAAAATAT
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
52 35 0.40
53 47 0.53
54 6 0.07
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (53 bp):
TTTTTTATTCAATTTGCAATCCTCCAAATAATATGGTGGCACCAAAATATAAA
Found at i:107258303 original size:21 final size:21
Alignment explanation
Indices: 107258259--107258299 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
107258249 GTTGAGATAG
*
107258259 ATTTTGTATTCTTAATCTTAT
1 ATTTTGTATTCTTAATCTAAT
*
107258280 ATTTTGTATTTTTAAT-TAAT
1 ATTTTGTATTCTTAATCTAAT
107258300 TATTAATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (21 bp):
ATTTTGTATTCTTAATCTAAT
Found at i:107258387 original size:18 final size:17
Alignment explanation
Indices: 107258343--107258387 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
107258333 TAATTGAGAA
107258343 AAAATAATTATT-ATTTT
1 AAAATAA-TATTAATTTT
107258360 -AAAT-ATATTAATTTAT
1 AAAATAATATTAATTT-T
107258376 AAAATAATATTA
1 AAAATAATATTA
107258388 GATAAGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
14 4 0.17
15 5 0.21
16 5 0.21
17 4 0.17
18 6 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AAAATAATATTAATTTT
Found at i:107259335 original size:19 final size:19
Alignment explanation
Indices: 107259300--107259337 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
107259290 TATCGAGTTA
*
107259300 AATAAAGAAATTTAAAAAT
1 AATAAAGAAATTAAAAAAT
107259319 AATAATAGAAA-TAAAAAAT
1 AATAA-AGAAATTAAAAAAT
107259338 TAAAAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (19 bp):
AATAAAGAAATTAAAAAAT
Found at i:107266852 original size:60 final size:57
Alignment explanation
Indices: 107266780--107266931 Score: 153
Period size: 60 Copynumber: 2.6 Consensus size: 57
107266770 GCAAGTTCAA
* * * * * *
107266780 GTACCAATTTGAACC-AAGAAACCAAGATCAGGTATCTAATTGGAACAAAATATACTTTAG
1 GTACCAAATTGAACCTAA-AAACCAAGATCAAGTACCTAATTCGAAAAAAACA-AC--TAG
* *
107266840 GTACCAAATTGAACCTTAAAGCCAAGATCAAGTACCTAATTCGAAAAAAACAACTAG
1 GTACCAAATTGAACCTAAAAACCAAGATCAAGTACCTAATTCGAAAAAAACAACTAG
* * * *
107266897 ATACCAAATTGAACCTTAAAGCCAAGTTCAAGTAC
1 GTACCAAATTGAACCTAAAAACCAAGATCAAGTAC
107266932 TAAAATGTAT
Statistics
Matches: 81, Mismatches: 10, Indels: 5
0.84 0.10 0.05
Matches are distributed among these distances:
57 36 0.44
59 2 0.02
60 42 0.52
61 1 0.01
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (57 bp):
GTACCAAATTGAACCTAAAAACCAAGATCAAGTACCTAATTCGAAAAAAACAACTAG
Found at i:107271177 original size:20 final size:19
Alignment explanation
Indices: 107271148--107271186 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
107271138 TATTGATTAA
*
107271148 AATATTCATTAACATGTGTT
1 AATATGCATTAA-ATGTGTT
*
107271168 AATATGCATTGAATGTGTT
1 AATATGCATTAAATGTGTT
107271187 GGTAGAGCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (19 bp):
AATATGCATTAAATGTGTT
Found at i:107282977 original size:50 final size:50
Alignment explanation
Indices: 107282853--107283101 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
107282843 GATAATAACA
* * ** * *
107282853 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
107282904 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
107282954 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
107283004 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
107283059 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
107283102 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Done.