Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 339 of 343
Found at i:108499693 original size:3 final size:3
Alignment explanation
Indices: 108499685--108499713 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
108499675 ATATATGTTT
108499685 TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
108499714 TCCATTCCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (3 bp):
TCC
Found at i:108504811 original size:34 final size:33
Alignment explanation
Indices: 108504760--108504862 Score: 163
Period size: 33 Copynumber: 3.1 Consensus size: 33
108504750 GTCCACATAT
*
108504760 GTTTTTTTTCTTTGTTAAGTTGATTGTGTCAAA
1 GTTTTTTTTTTTTGTTAAGTTGATTGTGTCAAA
108504793 GTTTTTTTTTTTTGGTTAAGTTGATTGTGTCAAA
1 GTTTTTTTTTTTT-GTTAAGTTGATTGTGTCAAA
* *
108504827 G-TTTGTTTTTTTGTTAAGTTGATTATGTCAAA
1 GTTTTTTTTTTTTGTTAAGTTGATTGTGTCAAA
108504859 GTTT
1 GTTT
108504863 GTTCCTATTT
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
32 20 0.31
33 24 0.37
34 21 0.32
ACGTcount: A:0.18, C:0.04, G:0.19, T:0.58
Consensus pattern (33 bp):
GTTTTTTTTTTTTGTTAAGTTGATTGTGTCAAA
Found at i:108504843 original size:32 final size:32
Alignment explanation
Indices: 108504760--108504865 Score: 158
Period size: 34 Copynumber: 3.2 Consensus size: 32
108504750 GTCCACATAT
*
108504760 GTTTTTTTTCTTTGTTAAGTTGATTGTGTCAAA
1 GTTTGTTTT-TTTGTTAAGTTGATTGTGTCAAA
*
108504793 GTTTTTTTTTTTTGGTTAAGTTGATTGTGTCAAA
1 G-TTTGTTTTTTT-GTTAAGTTGATTGTGTCAAA
*
108504827 GTTTGTTTTTTTGTTAAGTTGATTATGTCAAA
1 GTTTGTTTTTTTGTTAAGTTGATTGTGTCAAA
108504859 GTTTGTT
1 GTTTGTT
108504866 CCTATTTTTA
Statistics
Matches: 69, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
32 26 0.38
33 14 0.20
34 29 0.42
ACGTcount: A:0.18, C:0.04, G:0.20, T:0.58
Consensus pattern (32 bp):
GTTTGTTTTTTTGTTAAGTTGATTGTGTCAAA
Found at i:108508566 original size:24 final size:24
Alignment explanation
Indices: 108508534--108508585 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
108508524 AATCAAAGTC
* *
108508534 AAATATATTATGCT-ATTAAATGCT
1 AAATATATTATACTCA-TAAATACT
108508558 AAATATATTATACTCATAAATACT
1 AAATATATTATACTCATAAATACT
108508582 AAAT
1 AAAT
108508586 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.48, C:0.10, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTCATAAATACT
Found at i:108515155 original size:18 final size:18
Alignment explanation
Indices: 108515132--108515204 Score: 101
Period size: 18 Copynumber: 4.1 Consensus size: 18
108515122 CAATCTCAAC
* *
108515132 TACTGTATATGTGAACAG
1 TACTGTATACGTGAATAG
*
108515150 TACTGTATACGTAAATAG
1 TACTGTATACGTGAATAG
108515168 TACTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
* *
108515186 TATTGTATACATGAATAG
1 TACTGTATACGTGAATAG
108515204 T
1 T
108515205 TCCATAAATG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.36
Consensus pattern (18 bp):
TACTGTATACGTGAATAG
Found at i:108525401 original size:107 final size:109
Alignment explanation
Indices: 108525275--108525488 Score: 342
Period size: 109 Copynumber: 2.0 Consensus size: 109
108525265 TTGTCCAAAT
* *
108525275 CTATTCTTTAATCTTATATTTTCTCAAAAT-AAAAATAGA-CTTTTCCCAAAATATTTAAACTAA
1 CTATTCTTTAATCTTATATTTTCCCAAAATGAAAAATAGATCTTTTCCCAAAATATTTAAACCAA
* ** *
108525338 GTTTAAATTTTAAAATTGACATTATTAAAAAAGTTCTACCTAAC
66 ATTTAAATTTTAAAATCAACATTACTAAAAAAGTTCTACCTAAC
* *
108525382 CTATTCTTTAATCTTATATTTTCCCAAAATGAAAAATAGATTTTTTCCCAAAATATTTAATCCAA
1 CTATTCTTTAATCTTATATTTTCCCAAAATGAAAAATAGATCTTTTCCCAAAATATTTAAACCAA
108525447 ATTTAAATTTTAAAATCAACATTACTAAAAAAGTTCTACCTA
66 ATTTAAATTTTAAAATCAACATTACTAAAAAAGTTCTACCTA
108525489 CCTCGAATAA
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
107 29 0.30
108 9 0.09
109 59 0.61
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (109 bp):
CTATTCTTTAATCTTATATTTTCCCAAAATGAAAAATAGATCTTTTCCCAAAATATTTAAACCAA
ATTTAAATTTTAAAATCAACATTACTAAAAAAGTTCTACCTAAC
Found at i:108536641 original size:21 final size:21
Alignment explanation
Indices: 108536615--108536655 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
108536605 AGACGAGCAA
* *
108536615 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
108536636 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
108536656 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:108541182 original size:439 final size:439
Alignment explanation
Indices: 108540227--108545377 Score: 7328
Period size: 439 Copynumber: 11.8 Consensus size: 439
108540217 ATAATTTAGC
* * * * *
108540227 GTATCAAATAATCATATGATGACATCTTATTTAAAGTTTTTAAAAAATAAATATGAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
** * * * * * * * * * ** *
108540292 TTTTATAAAAATTAGTGGCATGGTTTGATGTATTAATTGTGGGTTAATTTTCACACCTAATACAT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
* * * **
108540357 CAAATATGAATTTTTATTTTTCT-TAGTATTATAATTATTTATTTCCTTTTTCATTTGTTACTAT
131 CAAATATAAATTTTTATTTTT-TATAGTATTATAATTATTTATTTTC-TTTTCATTTTTTACTGC
* * * * * * * *
108540421 TTAA-AGTAAGTAGTTGATACTTAAAA-TAACAAAAATATTTTTTCTATATAGGACCTTGTTAAT
194 CTAACA-TAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAAT
** * * ** * * * *
108540484 TTAACCGCAATTCAAC-TTGATGGGTGCGTGAATTTAAAAAAGATTCATAATCTATCAAGAGACA
258 TTAAGGGAAATTC-ACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCA
* * * * *
108540548 TCAACTTTGAAATCCTTGATTGCACTAACTGCAAAAGTTTAATTGAACTTTGAAATGAAGATGAT
322 TCAACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGAT
* * * * *
108540613 CATATGGTATATGTTTTCAAATTTTTTTTTGAAAACAATGATTTATAATTTGAT
387 CATATGGTATGTGTTTTCATA-TTTATTTCGAAAAAAATGATTTATAATTTGAT
* *
108540667 GTATTAAATATTCATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * * *
108540732 TTTTATTTAGATAAATGACATCGTATAATTTATTAATTGTGGGTGAATTTTCATGCCCGATA-GT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
* * *
108540796 CAAATATAAATTTTTATTTTTTTATAATATTATAATTATTTATTTTCTTTTCATTTGTTATTGCC
131 CAAATATAAATTTTTA-TTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
*
108540861 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCCTGTTAATTT
195 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
* * *** * * * * *
108540926 AAGGGCAATTTA-TTCTGATAAGTGCTTGATTTTAATGAAGATACGTAATTTTTCAAGAGCCATC
260 AAGGGAAATTCACTT-TGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATC
** *
108540990 AACCTTGAAATCCTTGATTGCTCTCAA-TGTAAAAGTTTAGTTGAACTTTGGAATGAAGGTGATC
324 AACCTTGAAATCCTTGATTGCTCT-AACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATC
*
108541054 ATATGGAATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
388 ATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
* *
108541106 GTATCAAATATTTATATGATTACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAATATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * * *
108541171 TTTTATTTAGATAAATAAAATTGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATATGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
**
108541236 CAAATATAAATTTTTTATTTTTTATTCTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
131 CAAATATAAA-TTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
*
108541301 TAACATAAATAGTTGATGCTT-AAAGTAATACAATTATTTTTTCTATACAAGGCCTTGTTAATTT
195 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
* * *
108541365 AAGGAAAATTTACTTTAAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
260 AAGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
* *
108541430 AGCTTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
325 ACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
108541495 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
390 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
108541545 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* *
108541610 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTCAC-CCCGATATGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
** *
108541674 CAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCAACTTTTATTGCCT
131 CAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCCT
*
108541739 AACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGTGCCTTGTTAATTTA
196 AACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTTA
** *
108541804 AGAAAAATTTACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAA
261 AGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAA
* * *
108541869 GCTTGAAATCCTTGATTGCTCTGACTGCAAAAGTTTAGTTGAACTTTGGAATGAAGATGATCATA
326 CCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCATA
*
108541934 TGGTATGTGTTTTCATATTTATTTCGAAAAAAATATTTTTAATTTATAATTTGAT
391 TGGTATGTGTTTTCATATTTATTTCG-AAAAAA-A----TGATTTATAATTTGAT
108541989 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * *
108542054 TTTTATTTAGATAAATGATATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCTGACACGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
**
108542119 CAAATATAAATTTTTATTTTTTATTCTATTATAATTATTTA-----TTTTC-----TT--T---T
131 CAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCCT
* *
108542169 ----T--AT--TT--T--TTAAAAGTAATACAATTA-TTTTTCTATATAGGGCCTTGTTAATATA
196 AACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTTA
* *
108542221 AGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGAAAGATACCTAACCTTTCAAGAGCCATCAA
261 AGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAA
* * * * *
108542286 CCTTGAATTCCTT-ATTTCTTTAACTGCCGAAGTTTGGTTGAACTTTGGAATGAAGATGATCATA
326 CCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCATA
* * *
108542350 TGGTATGTATTTTTATATTTATTT-TAAAAAAATGATTTATAATTTATAATTTGAT
391 TGGTATGTGTTTTCATATTTATTTCGAAAAAAATG-------ATTTATAATTTGAT
108542405 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * *
108542470 TTTTATTTAGATAAATGATATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCTGACACGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
**
108542535 CAAATATAAATTTTTATTTTTTATTCTATTATAATTATTTA-----TTTTC-----TT--T---T
131 CAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCCT
* *
108542585 ----T--AT--TT--T--TTAAAAGTAATACAATTA-TTTTTCTATATAGGGCCTTGTTAATATA
196 AACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTTA
* *
108542637 AGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGAAAGATACCTAACCTTTCAAGAGCCATCAA
261 AGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAA
* * * * *
108542702 CCTTGAATTCCTT-ATTTTCTTTAACTGCCGAAGTTTGGTTGAACTTTGGAATGAAGATGATCAT
326 CCTTGAAATCCTTGA-TTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
* * *
108542766 ATGGTATGTATTTTTATATTTATTT-TAAAAAAATGATTTATAATTTATAATTTGAT
390 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAATG-------ATTTATAATTTGAT
*
108542822 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTGAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
*
108542887 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGTCCGATACGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
* ** *
108542952 CAAGTATAAATTTTTATTTTTTATTCTATTATAATTATTTATTTTCTTTTCATTTTTTACCGCCT
131 CAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCCT
108543017 AACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTTA
196 AACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTTA
*
108543082 AGGGAAATTGACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAA
261 AGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAA
* *
108543147 GCTTGAAATCCTTGATTGCTCTAACTGCAAAAGTTTAGTTGAACTTTGGAATGAAGATGATCATA
326 CCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCATA
108543212 TGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
391 TGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
108543261 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
108543326 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
**
108543391 CAAATATAAATTTTTATTTTTTATTCTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCCT
131 CAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCCT
* *
108543456 AAAATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCTTTGTTAATTTA
196 AACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTTA
* * * *
108543521 AGGAAAATTTACTTTGAGGGGTGTGTGAATTTAAGGAAGATACTTAATCTTTCAAGAGCCATCAA
261 AGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAA
* *
108543586 GCTTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTTGGAATGAAGATGATCATA
326 CCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCATA
108543651 TGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
391 TGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
*
108543700 GTATCAAATATTTTTATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * * *
108543765 TTTTATTTAGATAAATGACATCGTTTGATTTATTAACTGTGGGTGAATTTTCACCCCCGATATGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
108543830 CAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCCT
131 CAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCCT
*
108543895 AACATAAATAGTTTATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTTA
196 AACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTTA
* * *
108543960 ATGGAAATTCACTTTGAGGGGTGCATGAATTTAAGGAAGATACCTAACCTTTCAAGAGCCATCAA
261 AGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAA
* * ** *
108544025 CCTTGAAATCCTTAATTTCTCTGGCTGCCAAAGTTTGGTTGAACTTTGGAATGAAGATGATCATA
326 CCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCATA
108544090 TGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
391 TGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
108544139 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* * ** *
108544204 TTTTATTTAGATAAATGACATCATTTGATTTATTAATTGTAGATGAATTTTCACGCTTGATATGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
* *
108544269 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTATTTTTATTTTTTACTGCC
131 CAAATATAAATTTTTA-TTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
* *
108544334 TAAAATAAATAGTTGATGGTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
195 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
* *
108544399 AAGGGAAATTCACTTTGAGGGGTGCGTGAATTTAGGGAAGATACCTAACCTTTCAAGAGCCATCA
260 AAGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
* ** *** *
108544464 ACCTTGAAATCCTTAATTTATCTGGTTGCCAAAGTTTGGTTGAACTTTGGAATGAAGATGATCAT
325 ACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
108544529 ATGGTATGTGTTTTCATATTTATTTCGAAAAAAAATGATTTATAATTTGAT
390 ATGGTATGTGTTTTCATATTTATTTCG-AAAAAAATGATTTATAATTTGAT
*
108544580 GTATCAAATATTTATATGACAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
1 GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
* *
108544645 TTTTATTTAGATAAATGACATCATTTGATTTATTAATTGTGGATGAATTTTCACGGCCGATACGT
66 TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
*
108544710 CAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATCTTTTACTGCC
131 CAAATATAAATTTTTA-TTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCC
* *
108544775 TAACATAAATAGTTGATGCTTAAAAGTAATATAATTATTTTTTCTATACAGGGTCTTGTTAATTT
195 TAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTT
* * * * *
108544840 ATGGGAAATTGACTTTGATGGGTGCGTGAATTTAAGGAACATACATAATCTTTCAAGAGCCATCA
260 AAGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCA
* * ** *
108544905 ACCTTGAAATCCTTAATTTCTCTGGCTGCCAAAGTTTGGTTGAACTTTGGAATGAAGATGATCAT
325 ACCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCAT
* ** *
108544970 ATAGTATGTGTTTTCATATTTATTTTTAAAAAAAAAGATTTATAA--T--T
390 ATGGTATGTGTTTTCATATTTA-TTTCGAAAAAAATGATTTATAATTTGAT
* * *
108545017 -TAT--AAT-TTGATGT-ATCAA-A-TTTA---AAA-TTTTTAAAAAATAAATATAAAAAATTTT
1 GTATCAAATATTTATATGAT-AACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTT
* *
108545071 ATTTTATTTAGATAAATGACATC-TTTGATTTATTAATCGTGGATGAATTTTCAGGCCCGATACG
65 ATTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACG
108545135 TCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGC
130 TCAAATATAAATTTTTA-TTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGC
*
108545200 CTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATATAGGGCCTTGTTAATT
194 CTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATT
* * *
108545265 TAAGGG-AATTTACTTTGAGGAGTGCATGAATTTAAGGAAGATACCTTAATCTTTCAAGAGCCAT
259 TAAGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGGAAGATACC-TAATCTTTCAAGAGCCAT
* * * ** *
108545329 TAATC-T-AAGAGTGCTTGATTGCTCTAACTGTGAAAGTTTAGTTGCACTT
323 CAACCTTGAA-A-TCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTT
108545378 CCTTGCCTCA
Statistics
Matches: 4377, Mismatches: 270, Indels: 142
0.91 0.06 0.03
Matches are distributed among these distances:
409 1 0.00
413 1 0.00
414 6 0.00
416 392 0.09
417 366 0.08
418 18 0.00
420 1 0.00
422 7 0.00
424 4 0.00
425 35 0.01
426 220 0.05
427 52 0.01
428 3 0.00
430 1 0.00
431 4 0.00
432 3 0.00
433 8 0.00
434 3 0.00
435 2 0.00
436 4 0.00
437 71 0.02
438 218 0.05
439 1513 0.35
440 632 0.14
441 436 0.10
442 4 0.00
444 150 0.03
445 212 0.05
446 10 0.00
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.43
Consensus pattern (439 bp):
GTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTA
TTTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGATGAATTTTCACGCCCGATACGT
CAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGCCT
AACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTTA
AGGGAAATTCACTTTGAGGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAA
CCTTGAAATCCTTGATTGCTCTAACTGCCAAAGTTTAGTTGAACTTTGGAATGAAGATGATCATA
TGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGAT
Found at i:108542177 original size:18 final size:18
Alignment explanation
Indices: 108542128--108542177 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
108542118 TCAAATATAA
108542128 ATTTTTATTTTTTATTCT
1 ATTTTTATTTTTTATTCT
* * * *
108542146 ATTATAATTATTTATTTT
1 ATTTTTATTTTTTATTCT
*
108542164 CTTTTTATTTTTTA
1 ATTTTTATTTTTTA
108542178 AAAGTAATAC
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTTTATTTTTTATTCT
Found at i:108542593 original size:18 final size:18
Alignment explanation
Indices: 108542544--108542593 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
108542534 TCAAATATAA
108542544 ATTTTTATTTTTTATTCT
1 ATTTTTATTTTTTATTCT
* * * *
108542562 ATTATAATTATTTATTTT
1 ATTTTTATTTTTTATTCT
*
108542580 CTTTTTATTTTTTA
1 ATTTTTATTTTTTA
108542594 AAAGTAATAC
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTTTATTTTTTATTCT
Found at i:108548605 original size:26 final size:23
Alignment explanation
Indices: 108548531--108548641 Score: 66
Period size: 26 Copynumber: 4.5 Consensus size: 23
108548521 AATAAGGTAT
*
108548531 AACAATTTAAAGTAAATA-ATCAA
1 AACAATTTAAAATAAATATAT-AA
* * *
108548554 AATGATTTTAAATAAATAATATATAA
1 AA-CAATTTAAA-ATA-AATATATAA
108548580 AACGAATTTTAAAATAAATACTATAA
1 AAC-AA-TTTAAAATAAATA-TATAA
*
108548606 ATGACAATTTAAAGTAAATAGTATAA
1 A--ACAATTTAAAATAAATA-TATAA
108548632 AA-AA-TTAAAA
1 AACAATTTAAAA
108548642 GAATTAACAC
Statistics
Matches: 69, Mismatches: 10, Indels: 19
0.70 0.10 0.19
Matches are distributed among these distances:
22 5 0.07
23 4 0.06
24 8 0.12
25 5 0.07
26 35 0.51
27 10 0.14
28 2 0.03
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (23 bp):
AACAATTTAAAATAAATATATAA
Found at i:108551143 original size:18 final size:18
Alignment explanation
Indices: 108551120--108551208 Score: 124
Period size: 18 Copynumber: 4.9 Consensus size: 18
108551110 CGTTTATGGT
*
108551120 ACTATTCACGTATACGGC
1 ACTATTCACGTATACAGC
* *
108551138 ACTATTCACGTATATAGT
1 ACTATTCACGTATACAGC
108551156 ACTATTCACGTATACAGC
1 ACTATTCACGTATACAGC
* *
108551174 ACTATTCACGTATACGGT
1 ACTATTCACGTATACAGC
*
108551192 ACTGTTCACGTATACAG
1 ACTATTCACGTATACAG
108551209 TAGTTGGGAT
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (18 bp):
ACTATTCACGTATACAGC
Found at i:108551165 original size:36 final size:36
Alignment explanation
Indices: 108551118--108551208 Score: 146
Period size: 36 Copynumber: 2.5 Consensus size: 36
108551108 ACCGTTTATG
* *
108551118 GTACTATTCACGTATACGGCACTATTCACGTATATA
1 GTACTATTCACGTATACAGCACTATTCACGTATACA
*
108551154 GTACTATTCACGTATACAGCACTATTCACGTATACG
1 GTACTATTCACGTATACAGCACTATTCACGTATACA
*
108551190 GTACTGTTCACGTATACAG
1 GTACTATTCACGTATACAG
108551209 TAGTTGGGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (36 bp):
GTACTATTCACGTATACAGCACTATTCACGTATACA
Found at i:108559690 original size:442 final size:441
Alignment explanation
Indices: 108558608--108561071 Score: 3789
Period size: 442 Copynumber: 5.6 Consensus size: 441
108558598 TTTTTGATTT
* * *
108558608 ATTTTCATGCCCGATATGTCAAATATAAATATTTA-TTTTTTATAATATTATAATTATTTATTTT
1 ATTTTCACGCCCGATATGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTT
* * *
108558672 CTTTTCATTTTTTAATGCCTAACATAAATAGCTGATGCTGAAAAGTAATACAATTA--TTTTTTC
66 CTTTTCATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTC
* * ** * *
108558735 TATACAGGGCCTTGTTAATTTAAGGGAAATTTAC-TTTGAGAGGTGTGTGAATTTAAGGAAGATA
131 TATACAGGGCCTTGTTAATATAAGGCAAATTCGCTTTTGTG-GGTGCGTGAATTTAAGGAAGATA
* * *
108558799 CCTAATCTTTCAAGAGCCATCAAGCTTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGA
195 CCTAATTTTTCAAGAGCTATCAA-CTTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGA
* * *
108558864 ACTTTGGAATGAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAAGGATTTATA
259 ACTTTGGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATA
* * *
108558929 ATTTGATGTATCAAATATTTGTATTATAACATTTTATTTACAGTTTTTTTAAAAAATAAATATAA
324 ATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAG--TTTTTAAAAAATAAATATAA
* *
108558994 AAGATTTTATTTTGTTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGA
387 AAGATTTTATTTTATTTAGATAAATGACATCGTTTAATTTATTAATTGTGGGTGA
* * *
108559049 ATTTTCAAGCCCGATACGTCAAATATAAATTTTTA-TTTTTTAGAGTATTATAATTATTTATTTT
1 ATTTTCACGCCCGATATGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTT
* *
108559113 CTTTTCATTTTTTATTGCCTAACATAAATAGTTTATGCTTAAAAGTAATACAATTATTTTTTTTT
66 CTTTTCATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTA-TTTTTTTT
* *
108559178 CTATGCAGGGCCTTGTTAATATAAGGCAAATTCACTTTTGTGGGTGCGTGAATTTAAGGAAGATA
130 CTATACAGGGCCTTGTTAATATAAGGCAAATTCGCTTTTGTGGGTGCGTGAATTTAAGGAAGATA
* *
108559243 CCTAATTTTTCAAGAGCTATCAACTTTGAAATCCTTGATTGCTCTTACGGGGAAAGTTTAGTTGA
195 CCTAATTTTTCAAGAGCTATCAAC-TTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGA
108559308 ACTTTGGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATA
259 ACTTTGGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATA
*
108559373 ATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAATA
324 ATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAA
*
108559438 GATTTTATTTTATTTAGATAAATGACATCGTTTAATTTATTAATAGTGGGTGA
389 GATTTTATTTTATTTAGATAAATGACATCGTTTAATTTATTAATTGTGGGTGA
*
108559491 ATTTTCACGCCCAATATGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTT
1 ATTTTCACGCCCGATATGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTT
108559556 CTTTTCATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTC
66 CTTTTCATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTC
* *
108559621 TATGCAGGGCCTTGTTAATATAAGGCAAATTCGCTTTTGTGGGTGCGGGAATTTAAGGAAGATAC
131 TATACAGGGCCTTGTTAATATAAGGCAAATTCGCTTTTGTGGGTGCGTGAATTTAAGGAAGATAC
* *
108559686 CTAATTTTTCAAGAGCTATCAACTTTGAAATCCTTGATTGCTCTTACGGGGAAAGTTTAGTTGAA
196 CTAATTTTTCAAGAGCTATCAAC-TTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGAA
108559751 CTTTGGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAA
260 CTTTGGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAA
* * *
108559816 TTTGATGTATCAAATATTTATATAATAAAATTTTATTTAAAGTTTTTAAAAAATAAATATAATAG
325 TTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAG
*
108559881 ATTTTATGTTATTTAGATAAATGACATCGTTTAATTTATTAATTGTGGGTGA
390 ATTTTATTTTATTTAGATAAATGACATCGTTTAATTTATTAATTGTGGGTGA
*
108559933 ATTTTCACGCCCAATATGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTT
1 ATTTTCACGCCCGATATGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTT
108559998 CTTTTCATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTT
66 CTTTTCATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTA-TTTTTTTT
* *
108560063 CTATGCATGG-CTTGTTAATATAAGGCAAATTCGCTTTTGTGGGTGCGTGAATTTAAGGAAGATA
130 CTATACAGGGCCTTGTTAATATAAGGCAAATTCGCTTTTGTGGGTGCGTGAATTTAAGGAAGATA
* *
108560127 CCTAATTTTTCAAGAGCTATCAACTTTGAAATCCTTGATTGCTCTTACGGGGAAAGTTTAGTTGA
195 CCTAATTTTTCAAGAGCTATCAAC-TTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGA
108560192 ACTTTGGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATTG-TTTAT
259 ACTTTGGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAA-TGATTTAT
* *
108560256 AATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTCTTAAAAAATAAATGTAAA
323 AATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAA
* *
108560321 AGATTTTATTTTATTTAGATAAATGACATCGTTCAATTTATTATTTGTGGGTGA
388 AGATTTTATTTTATTTAGATAAATGACATCGTTTAATTTATTAATTGTGGGTGA
* * *
108560375 ATTTTCACGCTCGATACGTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTT
1 ATTTTCACGCCCGATATGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTT
*
108560440 CTTTTCATTTTTTATTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTA--TTTTTTC
66 CTTTTCATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTC
* * * *
108560503 TATACAGGGCCTTGTTAATTTAAGGCGAATTTGC-TTTGACGGGTGCGTGAATTTAAGGAAGATA
131 TATACAGGGCCTTGTTAATATAAGGCAAATTCGCTTTTG-TGGGTGCGTGAATTTAAGGAAGATA
* * * * * * * *
108560567 CCTAATCTTTCAAGTGCCATCAAGCTTCAAATCTTTGAATGCTCTAACTGCGAAAGTTTAGTTTA
195 CCTAATTTTTCAAGAGCTATCAA-CTTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGA
* * *
108560632 GCTTTGGAATGAAGATGATCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGATTTATA
259 ACTTTGGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATA
*
108560697 ATTTGATATATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAA
324 ATTTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAA
* * * *
108560762 GATTTTAGTTTATTTAGATAAATGACATCATTTGATTTATTAATTGTGGATGA
389 GATTTTATTTTATTTAGATAAATGACATCGTTTAATTTATTAATTGTGGGTGA
*** *
108560815 ATTTTCAC-ATTGATATGTCAAATATAAATTTTTA-TTTTTTATAGTATTATAATTTTTTATTTT
1 ATTTTCACGCCCGATATGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTT
* * * * *
108560878 -TTTT-ACTTTTTACTGCTTAAAATAAATAGTTAATGCTTAAAAGTAATACAATTA-TTTTTTTA
66 CTTTTCATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTC
* * * *
108560940 TATACAGAGCCTTGTTAACT-TAAAAG-AAATTCG-TTGTGGTGGGTGCGTGAATTTAATGAAGA
131 TATACAGGGCCTTGTTAA-TAT-AAGGCAAATTCGCTT-TTGTGGGTGCGTGAATTTAAGGAAGA
* * * * *
108561002 TACCTAATATTTC-GGAGCTATCAACCTT-AAACTCCTTCATTGCTATAACTGTGAAAGTTTAGT
193 TACCTAATTTTTCAAGAGCTATCAA-CTTGAAA-TCCTTGATTGCTCTAACTGGGAAAGTTTAGT
108561065 TGAACTT
256 TGAACTT
108561072 CCTTGCCTCA
Statistics
Matches: 1890, Mismatches: 115, Indels: 41
0.92 0.06 0.02
Matches are distributed among these distances:
435 3 0.00
436 87 0.05
437 67 0.04
438 34 0.02
439 42 0.02
440 274 0.14
441 112 0.06
442 945 0.50
443 102 0.05
444 219 0.12
445 5 0.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (441 bp):
ATTTTCACGCCCGATATGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTT
CTTTTCATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTC
TATACAGGGCCTTGTTAATATAAGGCAAATTCGCTTTTGTGGGTGCGTGAATTTAAGGAAGATAC
CTAATTTTTCAAGAGCTATCAACTTGAAATCCTTGATTGCTCTAACTGGGAAAGTTTAGTTGAAC
TTTGGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAAT
TTGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGA
TTTTATTTTATTTAGATAAATGACATCGTTTAATTTATTAATTGTGGGTGA
Found at i:108560060 original size:884 final size:880
Alignment explanation
Indices: 108558069--108561071 Score: 4305
Period size: 884 Copynumber: 3.4 Consensus size: 880
108558059 GAAAAGGAAA
* * * * **
108558069 TTATAATTT-AGTGTATCAAATAATCATATGATGACACCTTATTTAAAGTTTTTAAAAAATAAAT
1 TTATAATTTGA-TGTATCAAATATTTATATAATAACATTTTATTTAAAGTTTTTAAAAAATAAAT
* * * * * * * * *
108558133 ATGAAGGATTTTATTTTATATAAATTAATGGCATCGTTTGATGTATTAATTGTGGGTTAATTTTC
65 ATAAAAGATTTTATGTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTC
* * * * * *
108558198 ACACCCAATACATAAAATATGAATTTTTATTTTTCT-TAATATTATAATTATTTATTTCCTTTTT
130 ACGCCCAATACGTCAAATATAAATTTTTATTTTT-TATAGTATTATAATTATTTATTTTC-TTTT
* * * * *
108558262 CATTTGTTACT--AT-A-GTAAATAGTTGATAG-TTAAAAGTAATATAA--A-TATTTTTTCTAT
193 CATTTTTTACTGCCTAACATAAATAGTTGAT-GCTTAAAAGTAATACAATTATTTTTTTTTCTAT
* * * ** * *
108558319 ACAGGGCCTTGTTAATTTAAGGGAAATTCACCTTGGTCAGTGCGTGAATTTAAGAAAGATACCTT
257 ACAGGGCCTTGTTAATATAAGGCAAATTCACTTTGGTGGGTGCGTGAATTTAAGGAAGATACCTA
* * * * *
108558384 ATTTTTCAAGAGCCATCAAAC-TTGAAATCCTTGATTGCTCTAACTGTGAAAATTTGGTTGAACT
322 ATTTTTCAAGAGCTATC-AACTTTGAAATCCTTGATTGCTCTAACGGGGAAAGTTTAGTTGAACT
* * *
108558448 TTGGAATGAAGATGATCATATGGTATGTGTTTTTATATTTTTTTC--AAAAAA--ATTTATAATT
386 TTGGAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATT
* * *
108558509 TAATGTATCAAATATTCATATGATAACATTTTATTTAAA-TTTTTAAAAAATAAATATAAAATAT
451 TGATGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGAT
* * *
108558573 TTTATTTTATTTAGATAAATG--A-----T-ATTTTTTGAT-T---T--ATTTTCATGCCCGATA
516 TTTATTTTATTTAGATAAATGACATCGTTTAATTTATTAATGTGGGTGAATTTTCACGCCCGATA
*
108558624 TGTCAAATATAAATATTTA-TTTTTTATAATATTATAATTATTTATTTTCTTTTCATTTTTTAAT
581 TGTCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTAAT
* *
108558688 GCCTAACATAAATAGCTGATGCTGAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAA
646 GCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAA
* * *
108558753 TTTAAGGGAAATTTACTTTGAGAGGTGTGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCA
711 TTTAAGGCAAATTTGCTTTGAG-GGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCA
108558818 TCAAGCTTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTTGGAATGAAGATGAT
775 TCAAGCTTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTTGGAATGAAGATGAT
*
108558883 CATATGGTATGTGTTTTTATATTTATTTCGAAAAAAAGGAT
840 CATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
* * *
108558924 TTATAATTTGATGTATCAAATATTTGTATTATAACATTTTATTTACAGTTTTTTTAAAAAATAAA
1 TTATAATTTGATGTATCAAATATTTATATAATAACATTTTATTTAAAG--TTTTTAAAAAATAAA
* *
108558989 TATAAAAGATTTTATTTTGTTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTT
64 TATAAAAGATTTTATGTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTT
* * *
108559054 CAAGCCCGATACGTCAAATATAAATTTTTATTTTTTAGAGTATTATAATTATTTATTTTCTTTTC
129 CACGCCCAATACGTCAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTC
* * *
108559119 ATTTTTTATTGCCTAACATAAATAGTTTATGCTTAAAAGTAATACAATTATTTTTTTTTCTATGC
194 ATTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTTCTATAC
*
108559184 AGGGCCTTGTTAATATAAGGCAAATTCACTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAAT
259 AGGGCCTTGTTAATATAAGGCAAATTCACTTTGGTGGGTGCGTGAATTTAAGGAAGATACCTAAT
*
108559249 TTTTCAAGAGCTATCAACTTTGAAATCCTTGATTGCTCTTACGGGGAAAGTTTAGTTGAACTTTG
324 TTTTCAAGAGCTATCAACTTTGAAATCCTTGATTGCTCTAACGGGGAAAGTTTAGTTGAACTTTG
108559314 GAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGA
389 GAATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGA
*
108559379 TGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAATAGATTTT
454 TGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTT
*
108559444 ATTTTATTTAGATAAATGACATCGTTTAATTTATTAATAGTGGGTGAATTTTCACGCCCAATATG
519 ATTTTATTTAGATAAATGACATCGTTTAATTTATTAAT-GTGGGTGAATTTTCACGCCCGATATG
* *
108559509 TCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTACTGC
583 TCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTAATGC
*
108559574 CTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTCTATGCAGGGCCTTGTTAA
648 CTAACATAAATAGTTGATGCTTAAAAGTAATACAATTA--TTTTTTCTATACAGGGCCTTGTTAA
* * * * * *
108559639 TATAAGGCAAATTCGCTTTTGTGGGTGCGGGAATTTAAGGAAGATACCTAATTTTTCAAGAGCTA
711 TTTAAGGCAAATTTGC-TTTGAGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCA
* * *
108559704 TCAA-CTTTGAAATCCTTGATTGCTCTTACGGGGAAAGTTTAGTTGAACTTTGGAATGAAGATGA
775 TCAAGC-TTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTTGGAATGAAGATGA
* *
108559768 CCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGAT
839 TCATATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
*
108559810 TTATAATTTGATGTATCAAATATTTATATAATAAAATTTTATTTAAAGTTTTTAAAAAATAAATA
1 TTATAATTTGATGTATCAAATATTTATATAATAACATTTTATTTAAAGTTTTTAAAAAATAAATA
* *
108559875 TAATAGATTTTATGTTATTTAGATAAATGACATCGTTTAATTTATTAATTGTGGGTGAATTTTCA
66 TAAAAGATTTTATGTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTCA
*
108559940 CGCCCAATATGTCAAATATAAATTTTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
131 CGCCCAATACGTCAAATATAAATTTTTA-TTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
*
108560005 TTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTTCTATGCA
195 TTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTTCTATACA
* * *
108560070 TGG-CTTGTTAATATAAGGCAAATTCGCTTTTGTGGGTGCGTGAATTTAAGGAAGATACCTAATT
260 GGGCCTTGTTAATATAAGGCAAATTCACTTTGGTGGGTGCGTGAATTTAAGGAAGATACCTAATT
*
108560134 TTTCAAGAGCTATCAACTTTGAAATCCTTGATTGCTCTTACGGGGAAAGTTTAGTTGAACTTTGG
325 TTTCAAGAGCTATCAACTTTGAAATCCTTGATTGCTCTAACGGGGAAAGTTTAGTTGAACTTTGG
108560199 AATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATTG-TTTATAATTTGA
390 AATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAA-TGATTTATAATTTGA
* *
108560263 TGTATCAAATATTTATATGATAACATTTTATTTAAAGTTCTTAAAAAATAAATGTAAAAGATTTT
454 TGTATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTT
* * * *
108560328 ATTTTATTTAGATAAATGACATCGTTCAATTTATTATTTGTGGGTGAATTTTCACGCTCGATACG
519 ATTTTATTTAGATAAATGACATCGTTTAATTTATTA-ATGTGGGTGAATTTTCACGCCCGATATG
*
108560393 TCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTATTGC
583 TCAAATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTAATGC
108560458 CTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATT
648 CTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATT
* *
108560523 TAAGGCGAATTTGCTTTGACGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGTGCCATC
713 TAAGGCAAATTTGCTTTGA-GGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATC
* * * * *
108560588 AAGCTTCAAATCTTTGAATGCTCTAACTGCGAAAGTTTAGTTTAGCTTTGGAATGAAGATGATCA
777 AAGCTTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTTGGAATGAAGATGATCA
108560653 TATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
842 TATGGTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
* *
108560692 TTATAATTTGATATATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATA
1 TTATAATTTGATGTATCAAATATTTATATAATAACATTTTATTTAAAGTTTTTAAAAAATAAATA
* *
108560757 TAAAAGATTTTA-GTTTATTTAGATAAATGACATCATTTGATTTATTAATTGTGGATGAATTTTC
66 TAAAAGATTTTATG-TTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTC
**** * *
108560821 AC-ATTGATATGTCAAATATAAATTTTTATTTTTTATAGTATTATAATTTTTTATTTT-TTTT-A
130 ACGCCCAATACGTCAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCA
* * * * *
108560883 CTTTTTACTGCTTAAAATAAATAGTTAATGCTTAAAAGTAATACAATTA--TTTTTTTATATACA
195 TTTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTTCTATACA
* * * *
108560946 GAGCCTTGTTAACT-TAAAAG-AAATTC-GTTGTGGTGGGTGCGTGAATTTAATGAAGATACCTA
260 GGGCCTTGTTAA-TAT-AAGGCAAATTCACTT-TGGTGGGTGCGTGAATTTAAGGAAGATACCTA
* * * * * * *
108561008 ATATTTC-GGAGCTATCAACCTT-AAACTCCTTCATTGCTATAACTGTGAAAGTTTAGTTGAACT
322 ATTTTTCAAGAGCTATCAACTTTGAAA-TCCTTGATTGCTCTAACGGGGAAAGTTTAGTTGAACT
108561071 T
386 T
108561072 CCTTGCCTCA
Statistics
Matches: 1942, Mismatches: 157, Indels: 77
0.89 0.07 0.04
Matches are distributed among these distances:
855 38 0.02
856 15 0.01
857 120 0.06
858 1 0.00
859 2 0.00
860 25 0.01
862 4 0.00
863 163 0.08
865 6 0.00
867 47 0.02
868 44 0.02
870 1 0.00
875 4 0.00
876 69 0.04
877 51 0.03
878 51 0.03
879 4 0.00
880 28 0.01
881 28 0.01
882 292 0.15
883 33 0.02
884 591 0.30
885 104 0.05
886 216 0.11
887 5 0.00
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (880 bp):
TTATAATTTGATGTATCAAATATTTATATAATAACATTTTATTTAAAGTTTTTAAAAAATAAATA
TAAAAGATTTTATGTTATTTAGATAAATGACATCGTTTGATTTATTAATTGTGGGTGAATTTTCA
CGCCCAATACGTCAAATATAAATTTTTATTTTTTATAGTATTATAATTATTTATTTTCTTTTCAT
TTTTTACTGCCTAACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTTTTCTATACAG
GGCCTTGTTAATATAAGGCAAATTCACTTTGGTGGGTGCGTGAATTTAAGGAAGATACCTAATTT
TTCAAGAGCTATCAACTTTGAAATCCTTGATTGCTCTAACGGGGAAAGTTTAGTTGAACTTTGGA
ATGAAGATGACCATATGGTATGTGTTTTCATATTTATTTCGAAAAAAATGATTTATAATTTGATG
TATCAAATATTTATATGATAACATTTTATTTAAAGTTTTTAAAAAATAAATATAAAAGATTTTAT
TTTATTTAGATAAATGACATCGTTTAATTTATTAATGTGGGTGAATTTTCACGCCCGATATGTCA
AATATAAATATTTATTTTTTTATAGTATTATAATTATTTATTTTCTTTTCATTTTTTAATGCCTA
ACATAAATAGTTGATGCTTAAAAGTAATACAATTATTTTTTCTATACAGGGCCTTGTTAATTTAA
GGCAAATTTGCTTTGAGGGTGCGTGAATTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAAGC
TTGAAATCCTTGATTGCTCTAACTGCGAAAGTTTAGTTGAACTTTGGAATGAAGATGATCATATG
GTATGTGTTTTTATATTTATTTCGAAAAAAATGAT
Found at i:108567308 original size:46 final size:46
Alignment explanation
Indices: 108567256--108567517 Score: 350
Period size: 46 Copynumber: 5.7 Consensus size: 46
108567246 TACCATAGTG
* * * * *
108567256 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCACGTTGCCATGGTA
**** *
108567302 TCTTTCAACCATGGTCTTATTTTTTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
**
108567348 TCTTTCAACCATGGTCTTATTCATTTCATATCACGTTG-CATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
*
108567393 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
* *
108567439 TCTTTTAACCATGGTCTTACACATTTCATATCA-GGTGTCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTG-CCATGGTA
108567485 TCTTTCAACCATGGTCTTACACATTTCATATCA
1 TCTTTCAACCATGGTCTTACACATTTCATATCA
108567518 GAGAGCACAC
Statistics
Matches: 198, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
45 49 0.25
46 149 0.75
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
Found at i:108567400 original size:91 final size:91
Alignment explanation
Indices: 108567256--108567517 Score: 364
Period size: 91 Copynumber: 2.9 Consensus size: 91
108567246 TACCATAGTG
* * *
108567256 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGTCATGGTATCTTTCAACCATGGTCTT
1 TCTTTCAACCATGGTCTTACTCA-TTTCATATCACGTTG-CATGGTATCTTTCAACCATGGTCTT
**** *
108567320 ATTTTTTTCATGTCACGTTGCCATGGTA
64 ACACATTTCATATCACGTTGCCATGGTA
*
108567348 TCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCATGGTATCTTTCAACCATGGTCTTAC
1 TCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCATGGTATCTTTCAACCATGGTCTTAC
*
108567413 ACATTTCATATCAGGTTGCCATGGTA
66 ACATTTCATATCACGTTGCCATGGTA
* * * *
108567439 TCTTTTAACCATGGTCTTACACATTTCATATCAGGTGTCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCACGT-TGCATGGTATCTTTCAACCATGGTCTTA
108567504 CACATTTCATATCA
65 CACATTTCATATCA
108567518 GAGAGCACAC
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
91 83 0.54
92 70 0.46
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.42
Consensus pattern (91 bp):
TCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCATGGTATCTTTCAACCATGGTCTTAC
ACATTTCATATCACGTTGCCATGGTA
Found at i:108567481 original size:137 final size:137
Alignment explanation
Indices: 108567256--108567517 Score: 366
Period size: 137 Copynumber: 1.9 Consensus size: 137
108567246 TACCATAGTG
* * * * *
108567256 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGTCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
**** * **
108567321 TTTTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTG
66 CACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTG
108567386 CATGGTA
131 CATGGTA
*
108567393 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTTAACCATGGTCTT
1 TCTTTCAACCATGGTCTTACACATTTTC-TATCAGGTTGCCATGGTATCTTTCAACCATGGTCTT
*
108567457 ACACATTTCATATCA-GGTGTCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
65 ACACATTTCATATCACGTTG-CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
108567518 GAGAGCACAC
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
136 7 0.06
137 102 0.94
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.42
Consensus pattern (137 bp):
TCTTTCAACCATGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTG
CATGGTA
Found at i:108568750 original size:30 final size:30
Alignment explanation
Indices: 108568683--108568750 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
108568673 CACCCTTAAA
* * *
108568683 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
108568713 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
108568742 AGTATTTAC
1 A-TATTTAC
108568751 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:108573582 original size:31 final size:31
Alignment explanation
Indices: 108573523--108573582 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
108573513 TTACCATTTC
*
108573523 AACTAAATTTTATAATTTTTGTACTAAAAAA
1 AACTAAATTTTATAATTTGTGTACTAAAAAA
108573554 AACTAAATTTTATAATTTGT-TACATAAAA
1 AACTAAATTTTATAATTTGTGTAC-TAAAA
108573583 TTTTCATCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 3 0.11
31 24 0.89
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (31 bp):
AACTAAATTTTATAATTTGTGTACTAAAAAA
Found at i:108576354 original size:14 final size:14
Alignment explanation
Indices: 108576334--108576452 Score: 148
Period size: 14 Copynumber: 8.0 Consensus size: 14
108576324 TTTTTTGGTT
108576334 TTTTTTTGCTGGAA
1 TTTTTTTGCTGGAA
*
108576348 ATTTTTTGCTGGAA
1 TTTTTTTGCTGGAA
*
108576362 TTTTCTTTGTTGGAA
1 TTTT-TTTGCTGGAA
108576377 TTTTTTTGGCTGGAA
1 TTTTTTT-GCTGGAA
108576392 TTTTTTTTGCTGGAAA
1 -TTTTTTTGCTGG-AA
108576408 TTTTTTTGCTGCTGGAA
1 -TTTTTT--TGCTGGAA
108576425 TTTTTTTGCTGGAA
1 TTTTTTTGCTGGAA
*
108576439 TTTTTTTGGTGGAA
1 TTTTTTTGCTGGAA
108576453 AATTTTTTTT
Statistics
Matches: 94, Mismatches: 5, Indels: 12
0.85 0.05 0.11
Matches are distributed among these distances:
14 40 0.43
15 24 0.26
16 22 0.23
17 2 0.02
18 6 0.06
ACGTcount: A:0.15, C:0.07, G:0.23, T:0.55
Consensus pattern (14 bp):
TTTTTTTGCTGGAA
Found at i:108576354 original size:15 final size:15
Alignment explanation
Indices: 108576334--108576461 Score: 147
Period size: 15 Copynumber: 8.5 Consensus size: 15
108576324 TTTTTTGGTT
108576334 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
108576349 -TTTTTTGCTGG-AA
1 TTTTTTTGCTGGAAA
*
108576362 TTTTCTTTGTTGG-AA
1 TTTT-TTTGCTGGAAA
*
108576377 TTTTTTTGGCTGGAAT
1 TTTTTTT-GCTGGAAA
108576393 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
*
108576408 TTTTTTTGCTGCTGGAA
1 TTTTTTTGCTG--GAAA
108576425 TTTTTTTGCTGG-AA
1 TTTTTTTGCTGGAAA
*
108576439 TTTTTTTGGTGGAAAA
1 TTTTTTTGCTGG-AAA
108576455 TTTTTTT
1 TTTTTTT
108576462 TGCTTCCCCC
Statistics
Matches: 99, Mismatches: 6, Indels: 15
0.82 0.05 0.12
Matches are distributed among these distances:
13 2 0.02
14 30 0.30
15 36 0.36
16 17 0.17
17 14 0.14
ACGTcount: A:0.16, C:0.06, G:0.21, T:0.57
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:108576358 original size:43 final size:44
Alignment explanation
Indices: 108576310--108576446 Score: 122
Period size: 44 Copynumber: 3.1 Consensus size: 44
108576300 CTTGCTTAGA
* * *
108576310 TTGCTGAATGTTCGTTTTTTGG-TTTTTTTTTGCTGGAA-ATTTT
1 TTGCTGAATGTTC-TTTGTTGGAATTTTTTTGGCTGGAATATTTT
* *
108576353 TTGCTGGAATTTTCTTTGTTGGAATTTTTTTGGCTGGAATTTTTT
1 TTGCT-GAATGTTCTTTGTTGGAATTTTTTTGGCTGGAATATTTT
*
108576398 TTGCTGGAAAT-TTTTTTGCTGCTGGAATTTTTTT-GCTGGAAT-TTTT
1 TTGCT-G-AATGTTCTTTG-T--TGGAATTTTTTTGGCTGGAATATTTT
108576444 TTG
1 TTG
108576447 GTGGAAAATT
Statistics
Matches: 81, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
43 12 0.15
44 21 0.26
45 17 0.21
46 11 0.14
47 8 0.10
48 12 0.15
ACGTcount: A:0.13, C:0.07, G:0.22, T:0.58
Consensus pattern (44 bp):
TTGCTGAATGTTCTTTGTTGGAATTTTTTTGGCTGGAATATTTT
Found at i:108576389 original size:30 final size:30
Alignment explanation
Indices: 108576333--108576465 Score: 173
Period size: 31 Copynumber: 4.4 Consensus size: 30
108576323 GTTTTTTGGT
*
108576333 TTTTTTTTGCTGGAAATTTTTT-GCTGGAA
1 TTTTTTTTGCTGGAATTTTTTTGGCTGGAA
* *
108576362 TTTTCTTTGTTGGAATTTTTTTGGCTGGAA
1 TTTTTTTTGCTGGAATTTTTTTGGCTGGAA
108576392 TTTTTTTTGCTGGAAATTTTTTTGCTGCTGGAA
1 TTTTTTTTGCTGG-AATTTTTTTG--GCTGGAA
108576425 -TTTTTTTGCTGGAATTTTTTTGG-TGGAAAA
1 TTTTTTTTGCTGGAATTTTTTTGGCTGG--AA
108576455 TTTTTTTTGCT
1 TTTTTTTTGCT
108576466 TCCCCCCCTT
Statistics
Matches: 92, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
28 3 0.03
29 20 0.22
30 20 0.22
31 30 0.33
32 12 0.13
33 7 0.08
ACGTcount: A:0.15, C:0.07, G:0.21, T:0.57
Consensus pattern (30 bp):
TTTTTTTTGCTGGAATTTTTTTGGCTGGAA
Found at i:108576892 original size:25 final size:25
Alignment explanation
Indices: 108576861--108576908 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
108576851 TCTTTACTCA
108576861 TTGTCGTGTAACAAGAACAGAGTTG
1 TTGTCGTGTAACAAGAACAGAGTTG
* *
108576886 TTGTCGTGTAACGAGAATAGAGT
1 TTGTCGTGTAACAAGAACAGAGT
108576909 AAAGACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (25 bp):
TTGTCGTGTAACAAGAACAGAGTTG
Found at i:108577558 original size:45 final size:47
Alignment explanation
Indices: 108577494--108577847 Score: 307
Period size: 54 Copynumber: 6.8 Consensus size: 47
108577484 GACCCGAGGC
*
108577494 TCAACTCACCTCTCGCAATATGAGTTGATTGTTGAAAAACAG-AAA-
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAAG
108577539 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-G----AAAA-G
108577592 TTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGG
1 -TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG-----AAAA-G
* *
108577646 TTCAACCCACCTCTCGCAATATGAGTTGATTTTTGAAAACCAGAAATTAAAAGG
1 -TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG-----AAAA-G
*
108577700 TTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACGGGAATTAAAAGG
1 -TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAC----A-GAAAA-G
* *
108577755 CTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAATAGGAATTAAAAGG
1 -TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-G----AAAA-G
108577809 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
1 -TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA
108577848 CTTAATTTGA
Statistics
Matches: 276, Mismatches: 12, Indels: 32
0.86 0.04 0.10
Matches are distributed among these distances:
45 40 0.14
46 1 0.00
50 1 0.00
51 3 0.01
53 1 0.00
54 176 0.64
55 53 0.19
59 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (47 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAAG
Found at i:108577621 original size:54 final size:54
Alignment explanation
Indices: 108577539--108577847 Score: 519
Period size: 54 Copynumber: 5.7 Consensus size: 54
108577529 AAAACAGAAA
108577539 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
*
108577593 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
* * *
108577647 TCAACCCACCTCTCGCAATATGAGTTGATTTTTGAAAACCAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
* *
108577701 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACGGGAATTAAAAGGC
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGGAATTAAAAGGT
* * *
108577756 TCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAATAGGAATTAAAAGGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
108577810 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA
108577848 CTTAATTTGA
Statistics
Matches: 241, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
54 183 0.76
55 58 0.24
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (54 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
Found at i:108577764 original size:163 final size:153
Alignment explanation
Indices: 108577490--108577847 Score: 536
Period size: 163 Copynumber: 2.3 Consensus size: 153
108577480 ATGTGACCCG
*
108577490 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTGTTGAAAAACAGAAATCAACTCACCTCTCGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATCAACTCACCTCTCGC
*
108577555 AATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTG
66 AATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTG
108577620 ATTTTTGAAAAACAGAAATTAAA
131 ATTTTTGAAAAACAGAAATTAAA
* * *
108577643 AGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTGAAAACCAGAAATTAAAAGGTTCAACTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG------AAA---TCAACTC
* *
108577708 ACCTCTCGCAATATGAGTTGATTTTTTGAAAAACGGGAATTAAAAGGCTCAACTCACCTCTCGTA
57 ACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGGAATTAAAAGGCTCAACTCACCTCTCGCA
* *
108577773 ATATGAGTTGATTTTTGAAAAATAGGAATTAAA
121 ATATGAGTTGATTTTTGAAAAACAGAAATTAAA
108577806 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA
108577848 CTTAATTTGA
Statistics
Matches: 183, Mismatches: 11, Indels: 11
0.89 0.05 0.05
Matches are distributed among these distances:
153 42 0.23
159 3 0.02
162 28 0.15
163 101 0.55
164 9 0.05
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (153 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATCAACTCACCTCTCGC
AATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAAACAGAAATTAAA
Found at i:108577792 original size:109 final size:109
Alignment explanation
Indices: 108577539--108577847 Score: 530
Period size: 109 Copynumber: 2.8 Consensus size: 109
108577529 AAAACAGAAA
108577539 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACTCACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACTCACCT
*
108577604 CTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAAGGT
66 CTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGC
* * *
108577647 TCAACCCACCTCTCGCAATATGAGTTGATTTTTGAAAACCAGAAATTAAAAGGTTCAACTCACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACTCACCT
* *
108577712 CTCGCAATATGAGTTGATTTTTTGAAAAACGGGAATTAAAAGGC
66 CTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGC
* * *
108577756 TCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAATAGGAATTAAAAGGCTCAACTCACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACTCACCT
108577821 CTCGCAATATGAGTTGATTTTTTGAAA
66 CTCGCAATATGAGTTGATTTTTTGAAA
108577848 CTTAATTTGA
Statistics
Matches: 188, Mismatches: 12, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
108 79 0.42
109 109 0.58
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (109 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACTCACCT
CTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGC
Found at i:108578034 original size:145 final size:145
Alignment explanation
Indices: 108577853--108578810 Score: 1740
Period size: 145 Copynumber: 6.6 Consensus size: 145
108577843 TGAAACTTAA
** * *
108577853 TTTGAAAAGCAGATTTTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATATCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
108577918 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGTTCAACTCATTTCTCG
66 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
108577983 CAATATGAGTTGAAT
131 CAATATGAGTTGAAT
* *
108577998 TTTGAAAAGCAAAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
108578063 AGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
66 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
108578128 CAATATGAGTTGAAT
131 CAATATGAGTTGAAT
108578143 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
108578208 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
66 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
108578273 CAATATGAGTTGAAT
131 CAATATGAGTTGAAT
108578288 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
108578353 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
66 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
108578418 CAATATGAGTTGAAT
131 CAATATGAGTTGAAT
* * *
108578433 TTTGAAAAGCAAAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTTGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
108578498 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTTATTTCTCG
66 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
108578563 CAATATGAGTTGAAT
131 CAATATGAGTTGAAT
108578578 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
* * *
108578643 AGTTGAATTTTGAAAAGTAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCATTTCTC
66 AGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
108578708 GCAATATGAGTTGAAT
130 GCAATATGAGTTGAAT
*
108578724 TTTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
108578788 AGTTGAATTTTTG-AAACAGAAAT
66 AGTTGAA-TTTTGAAAACAGAAAT
108578811 AAAAGCATCA
Statistics
Matches: 789, Mismatches: 22, Indels: 5
0.97 0.03 0.01
Matches are distributed among these distances:
144 6 0.01
145 710 0.90
146 73 0.09
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (145 bp):
TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
CAATATGAGTTGAAT
Found at i:108581004 original size:14 final size:14
Alignment explanation
Indices: 108580985--108581020 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
108580975 GCATTTGATT
108580985 TTTTTTTTCTTGTC
1 TTTTTTTTCTTGTC
* *
108580999 TTTTTTTTCTTTTG
1 TTTTTTTTCTTGTC
108581013 TTTTTTTT
1 TTTTTTTT
108581021 TTTTTTCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (14 bp):
TTTTTTTTCTTGTC
Found at i:108581004 original size:15 final size:15
Alignment explanation
Indices: 108580984--108581038 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
108580974 GGCATTTGAT
108580984 TTTTTTTTTCTTGTC
1 TTTTTTTTTCTTGTC
*
108580999 TTTTTTTTCTTTTGT-
1 TTTTTTTT-TCTTGTC
*
108581014 TTTTTTTTT-TTTTC
1 TTTTTTTTTCTTGTC
108581028 TTTTTCTTTTC
1 TTTTT-TTTTC
108581039 ATGACTGTCG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 3 0.09
14 6 0.18
15 20 0.59
16 5 0.15
ACGTcount: A:0.00, C:0.11, G:0.04, T:0.85
Consensus pattern (15 bp):
TTTTTTTTTCTTGTC
Found at i:108581031 original size:14 final size:14
Alignment explanation
Indices: 108580983--108581037 Score: 60
Period size: 13 Copynumber: 4.1 Consensus size: 14
108580973 TGGCATTTGA
*
108580983 TTTTTTTTTTCTTG
1 TTTTTTTTTTCTTT
*
108580997 TCTTTTTTTTC-TT
1 TTTTTTTTTTCTTT
*
108581010 TTGTTTTTTT-TTT
1 TTTTTTTTTTCTTT
*
108581023 TTTTCTTTTTCTTT
1 TTTTTTTTTTCTTT
108581037 T
1 T
108581038 CATGACTGTC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
13 19 0.58
14 14 0.42
ACGTcount: A:0.00, C:0.09, G:0.04, T:0.87
Consensus pattern (14 bp):
TTTTTTTTTTCTTT
Found at i:108585767 original size:8 final size:8
Alignment explanation
Indices: 108585754--108585781 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
108585744 GTGGTTAGTC
108585754 CTTGGTTG
1 CTTGGTTG
108585762 CTTGGTTG
1 CTTGGTTG
108585770 CTTGGTTG
1 CTTGGTTG
108585778 CTTG
1 CTTG
108585782 CCGGATATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.14, G:0.36, T:0.50
Consensus pattern (8 bp):
CTTGGTTG
Found at i:108585855 original size:14 final size:14
Alignment explanation
Indices: 108585836--108585978 Score: 126
Period size: 14 Copynumber: 9.4 Consensus size: 14
108585826 TTTTTGGTTT
108585836 TTTTTTGCTGGAAA
1 TTTTTTGCTGGAAA
*
108585850 TTTTTTGCTGGAAT
1 TTTTTTGCTGGAAA
108585864 TTTCTTTGCTGG-AA
1 TTT-TTTGCTGGAAA
*
108585878 TTATTTTGGCTGGAATT
1 TT-TTTT-GCTGGAA-A
108585895 TTTTTTGCTGGAAA
1 TTTTTTGCTGGAAA
*
108585909 TTTTTTTGCTGCTGGAAT
1 --TTTTT--TGCTGGAAA
108585927 TTTTTTGCTGGAAA
1 TTTTTTGCTGGAAA
*
108585941 TTTTTTGCTGCTGGAAT
1 -TTTTT--TGCTGGAAA
*
108585958 TTTTTTGGTGGAAAA
1 TTTTTTGCTGG-AAA
108585973 TTTTTT
1 TTTTTT
108585979 TTGCTTCCCC
Statistics
Matches: 107, Mismatches: 9, Indels: 25
0.76 0.06 0.18
Matches are distributed among these distances:
14 35 0.33
15 34 0.32
16 20 0.19
17 10 0.09
18 8 0.07
ACGTcount: A:0.17, C:0.08, G:0.22, T:0.54
Consensus pattern (14 bp):
TTTTTTGCTGGAAA
Found at i:108585855 original size:15 final size:15
Alignment explanation
Indices: 108585835--108585979 Score: 163
Period size: 15 Copynumber: 9.5 Consensus size: 15
108585825 TTTTTTGGTT
108585835 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
108585850 -TTTTTTGCTGG-AA
1 TTTTTTTGCTGGAAA
108585863 TTTTCTTTGCTGG-AA
1 TTTT-TTTGCTGGAAA
* *
108585878 TTATTTTGGCTGGAAT
1 TT-TTTTTGCTGGAAA
108585894 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
*
108585909 TTTTTTTGCTGCTGGAA
1 TTTTTTTGCTG--GAAA
108585926 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
108585941 TTTTTTGCTGCTGG-AA
1 TTTTTT--TGCTGGAAA
*
108585957 TTTTTTTGGTGGAAAA
1 TTTTTTTGCTGG-AAA
108585973 TTTTTTT
1 TTTTTTT
108585980 TGCTTCCCCC
Statistics
Matches: 113, Mismatches: 7, Indels: 19
0.81 0.05 0.14
Matches are distributed among these distances:
13 2 0.02
14 19 0.17
15 50 0.44
16 22 0.19
17 20 0.18
ACGTcount: A:0.17, C:0.08, G:0.21, T:0.54
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:108585930 original size:31 final size:31
Alignment explanation
Indices: 108585835--108585983 Score: 186
Period size: 31 Copynumber: 4.9 Consensus size: 31
108585825 TTTTTTGGTT
108585835 TTTTTTTGCTGGAAA--TTTTT-TGCTGGAA
1 TTTTTTTGCTGGAAATTTTTTTGTGCTGGAA
*
108585863 TTTTCTTTGCTGG-AATTATTTTG-GCTGGAA
1 TTTT-TTTGCTGGAAATTTTTTTGTGCTGGAA
108585893 TTTTTTTTGCTGGAAATTTTTTTGCTGCTGGAA
1 -TTTTTTTGCTGGAAATTTTTTTG-TGCTGGAA
108585926 TTTTTTTGCTGGAAA-TTTTTTGCTGCTGGAA
1 TTTTTTTGCTGGAAATTTTTTTG-TGCTGGAA
*
108585957 TTTTTTTGGTGGAAAATTTTTTT-TGCT
1 TTTTTTTGCTGG-AAATTTTTTTGTGCT
108585984 TCCCCCCCCT
Statistics
Matches: 108, Mismatches: 3, Indels: 17
0.84 0.02 0.13
Matches are distributed among these distances:
28 6 0.06
29 8 0.07
30 19 0.18
31 44 0.41
32 18 0.17
33 13 0.12
ACGTcount: A:0.16, C:0.08, G:0.21, T:0.54
Consensus pattern (31 bp):
TTTTTTTGCTGGAAATTTTTTTGTGCTGGAA
Found at i:108590103 original size:131 final size:131
Alignment explanation
Indices: 108589831--108590333 Score: 419
Period size: 131 Copynumber: 3.8 Consensus size: 131
108589821 GTGTAATTCC
* * * * * * *
108589831 GAAGGGATCTTCGATTGTTTTGTGCAAATGAAAAAACACAACCCAGCACGATAGGGTACGATTCT
1 GAAGGGATATTCGATTATTTTGAGCAAACGAAAAATCACAACCCAACACGATAGGGCACGATTC-
*** * * * *
108589896 CA--AATCACCAAACATCGAACCTCGCCTTCGTTTTGAAAGGTTTTTAATAAACACT-AGCGAAA
65 CACGAATTGTCAAACATCGAACATCGCCTTCGTTTTAAAAGATTTTTAA-AAAC-CTGAGTGAAA
***
108589958 ACCT
128 TTTT
* * ** * * * * *
108589962 AAAGGAATATTCGATTGCTTTGAGCAAATGAGAAATCACAACCCAGCACGATAGGGTATGATTCC
1 GAAGGGATATTCGATTATTTTGAGCAAACGAAAAATCACAACCCAACACGATAGGGCACGATTCC
* ** ** *
108590027 -CGAATTGTCAAACACCGAGTATTACCTTCGTTTTAAAAGATTTTTAGAAGACCTGAGTGAAATT
66 ACGAATTGTCAAACATCGAACATCGCCTTCGTTTTAAAAGATTTTTA-AAAACCTGAGTGAAATT
108590091 TT
130 TT
* * * ** * * *
108590093 GAAGGGATATTTGATTATTTTAAGCAAACGAGAAATTGCGACCCAACACGTTAGGGCACAATTCC
1 GAAGGGATATTCGATTATTTTGAGCAAACGAAAAATCACAACCCAACACGATAGGGCACGATTCC
* ** *
108590158 ACGAATTGTCAAATATCGAACATCGCCTTC-TTTTAAGTGA-TTTTAAAATACATGAGTGAAATT
66 ACGAATTGTCAAACATCGAACATCGCCTTCGTTTTAAAAGATTTTTAAAA-ACCTGAGTGAAATT
108590221 TT
130 TT
* * * *
108590223 GAAGGGATATTTGATTATTTTGAGCAAACGAAAAATTACAACTCAACACGTTAGGGCACGATTCC
1 GAAGGGATATTCGATTATTTTGAGCAAACGAAAAATCACAACCCAACACGATAGGGCACGATTCC
* * * *
108590288 GCGAATTGTCAAATATCAAATC-TCGTCTTCGTTTT-AAAGAATTTTT
66 ACGAATTGTCAAACATCGAA-CATCGCCTTCGTTTTAAAAG-ATTTTT
108590334 GGATGAATGA
Statistics
Matches: 302, Mismatches: 60, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
129 2 0.01
130 109 0.36
131 163 0.54
132 28 0.09
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (131 bp):
GAAGGGATATTCGATTATTTTGAGCAAACGAAAAATCACAACCCAACACGATAGGGCACGATTCC
ACGAATTGTCAAACATCGAACATCGCCTTCGTTTTAAAAGATTTTTAAAAACCTGAGTGAAATTT
T
Found at i:108596570 original size:126 final size:126
Alignment explanation
Indices: 108596352--108596587 Score: 357
Period size: 126 Copynumber: 1.9 Consensus size: 126
108596342 TTCGTGAGCG
* *
108596352 GGATCTTAATCATTGCCCAATGATCAAATTTCCAAGAATCCCTAGAAGCTTAATAAAAATAAACT
1 GGATCTTAATCATTGCCCAATGATCAAATTTCCAAGAATCCCAAGAAGCTTAACAAAAATAAACT
* *
108596417 TATCTGGCACTCAAATTGATGAAGTGTCCTTACCTTTGGACTCTCGATCCCTTCGTGAATT
66 TATCTGGCACTCAAATTGAAGAAGTGTCCTTACCTTTCGACTCTCGATCCCTTCGTGAATT
* * * * *
108596478 GGATCTTAGTTATTGCCCAATGGTCAAGTTTCC-AGAAATCCCAAGAAGCTTAACAAAATTAAAC
1 GGATCTTAATCATTGCCCAATGATCAAATTTCCAAG-AATCCCAAGAAGCTTAACAAAAATAAAC
* *
108596542 TTATCTGGCACTCAAATTGAAGAGGTGTCCTTGCCTTTCGACTCTC
65 TTATCTGGCACTCAAATTGAAGAAGTGTCCTTACCTTTCGACTCTC
108596588 TATGTAATCT
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
125 2 0.02
126 96 0.98
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (126 bp):
GGATCTTAATCATTGCCCAATGATCAAATTTCCAAGAATCCCAAGAAGCTTAACAAAAATAAACT
TATCTGGCACTCAAATTGAAGAAGTGTCCTTACCTTTCGACTCTCGATCCCTTCGTGAATT
Found at i:108597820 original size:15 final size:15
Alignment explanation
Indices: 108597800--108597831 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
108597790 ATCCTTCACG
108597800 ATGAAGAAGAAGATT
1 ATGAAGAAGAAGATT
*
108597815 ATGAAGGAGAAGATT
1 ATGAAGAAGAAGATT
108597830 AT
1 AT
108597832 CACGTAGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.28, T:0.22
Consensus pattern (15 bp):
ATGAAGAAGAAGATT
Found at i:108604108 original size:21 final size:21
Alignment explanation
Indices: 108604082--108604136 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
108604072 ATGAGTTTTT
* *
108604082 TTGTTTCATGACTTTTAAACA
1 TTGTTTCATAAATTTTAAACA
*
108604103 TTGTTTGATAAATTTTAAAC-
1 TTGTTTCATAAATTTTAAACA
*
108604123 TGAGTTTCATAAAT
1 T-TGTTTCATAAAT
108604137 ATTTCTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (21 bp):
TTGTTTCATAAATTTTAAACA
Found at i:108604220 original size:28 final size:25
Alignment explanation
Indices: 108604188--108604252 Score: 62
Period size: 26 Copynumber: 2.6 Consensus size: 25
108604178 TGTCACTATT
*
108604188 TTAAATATAAAATATATAATTTTATA
1 TTAAATATAAAATAT-TAATTATATA
* *
108604214 TCGTAAAAATTAAA-ATTAATTATATA
1 T--TAAATATAAAATATTAATTATATA
108604240 TTAAATA-AAAATA
1 TTAAATATAAAATA
108604253 AAATTCAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
23 3 0.10
24 6 0.19
26 11 0.35
27 2 0.06
28 9 0.29
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (25 bp):
TTAAATATAAAATATTAATTATATA
Found at i:108605976 original size:3 final size:3
Alignment explanation
Indices: 108605968--108606346 Score: 131
Period size: 3 Copynumber: 125.7 Consensus size: 3
108605958 TAAAACATAT
* * * *
108605968 ATA ATA AT- ATG ATA ATA ATA ATA ACA ATA GTA ATAA ATAA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A ATA ATA
* * * *
108606014 ATA ATA AAA ATA ATA GTA A-A GAAA ATA A-A GATA AAA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA
* * * * * *
108606059 ATG GTA ATA ATA ATA AAA ATA A-A AGTA ATA ATA AT- ATG TTA AGTT
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA A-TA
* * * * * *
108606104 ATA ATA GT- AGA ATA ATA ATA ATA GTG ACA ATA ATA AT- ATA TTA GATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * * * *
108606151 ATA ATA GTA ATA A-A TATA ATG GTA ATA ATT ATA ATT ATA ATTA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
* * * * * *
108606197 CTA ATA CTA ACA ATA A-A TGTA ATA GTA A-A AT- ATC ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
108606240 ATA GCT- ATA ATA ATA AT- ATT TTAA ATA A-G ATA ATG ATA ATA GATA
1 ATA -ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA -ATA
* * * * *
108606285 GA-A AGTG GTA GTA GTG ATA ATA CATTA ATA ATA ATA ATA ATA ATA ATA
1 -ATA A-TA ATA ATA ATA ATA ATA -A-TA ATA ATA ATA ATA ATA ATA ATA
108606333 ATA ATA ATA ATA AT
1 ATA ATA ATA ATA AT
108606347 TAATTTGAAA
Statistics
Matches: 273, Mismatches: 73, Indels: 60
0.67 0.18 0.15
Matches are distributed among these distances:
2 21 0.08
3 221 0.81
4 29 0.11
5 2 0.01
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:108607172 original size:9 final size:9
Alignment explanation
Indices: 108607158--108607189 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
108607148 AATGTCTCCA
108607158 AAAAAAACC
1 AAAAAAACC
108607167 AAAAAAACC
1 AAAAAAACC
108607176 AAAAAAACC
1 AAAAAAACC
108607185 AAAAA
1 AAAAA
108607190 GATTAAAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAACC
Found at i:108616701 original size:44 final size:43
Alignment explanation
Indices: 108616638--108616724 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 43
108616628 TCCTAATTGG
108616638 GAAAATAGTTCCCTTATTCTAATAAACTTACTAAAACATAAAAA
1 GAAAATAGTTCCCTTATTCTAATAAAC-TACTAAAACATAAAAA
* *
108616682 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAA
108616725 TATTTCTAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 15 0.37
44 26 0.63
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (43 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAA
Found at i:108621432 original size:44 final size:43
Alignment explanation
Indices: 108621369--108621455 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 43
108621359 TCCTAATTGG
108621369 GAAAATAGTTCCCTTATTCTAATAAACTTACTAAAACATAAAAA
1 GAAAATAGTTCCCTTATTCTAATAAAC-TACTAAAACATAAAAA
* *
108621413 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAA
108621456 TATTTCTAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 15 0.37
44 26 0.63
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (43 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAA
Found at i:108627279 original size:15 final size:15
Alignment explanation
Indices: 108627259--108627288 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
108627249 GACCATGATT
108627259 TATGGCAAAGATAAA
1 TATGGCAAAGATAAA
*
108627274 TATGGCAGAGATAAA
1 TATGGCAAAGATAAA
108627289 CTCTTATTCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.20
Consensus pattern (15 bp):
TATGGCAAAGATAAA
Found at i:108634621 original size:189 final size:189
Alignment explanation
Indices: 108634390--108635026 Score: 956
Period size: 189 Copynumber: 3.4 Consensus size: 189
108634380 CAATATTTCA
* *
108634390 AAGTTGGAATTCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
108634455 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
* *
108634520 CCCTATGTAATCTTCAGAATTTAAATATGAAGGGCTCAAGGGTAAAAAATGTGTCGATC
131 CCCTATGTAATCTTCGGAATTTAAATATGAAGGGCTCAAGGGTAAAAAATGTATCGATC
*
108634579 AAGTTGGAATCCCTTCGTCAATTAGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
* *
108634644 AGGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTTCTTGCCTTTCGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
* * *
108634709 CCCTAAGTAATCTTTGGAATTTAAATATGAGGGGCTCAAGGGTAAAAAATGTATCGATC
131 CCCTATGTAATCTTCGGAATTTAAATATGAAGGGCTCAAGGGTAAAAAATGTATCGATC
* * * * *
108634768 AAGTTGGAATCCCTTCGTAAACTGAATCTTAGTAATTGCCCAATGATCAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
* * *
108634833 AAGAAGCTTAATAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCATTGCCTTTGGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
* * * * * *
108634898 CTCTATGTAATCTTCGGGACTTAGATATG-AGTGGCTC-TGCGGTAAAAAATGTATCGACC
131 CCCTATGTAATCTTCGGAATTTAAATATGAAG-GGCTCAAG-GGTAAAAAATGTATCGATC
* * * * * *
108634957 AAGTTGGAATCTCTTCGT-TATCTGGATCTTAGTGGTTGCCCAATGGTTGAATTTCCAGAAATTC
1 AAGTTGGAATCCCTTCGTCAAT-TGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCC
108635021 CAAGAA
65 CAAGAA
108635027 TTACATGGGA
Statistics
Matches: 405, Mismatches: 40, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
188 3 0.01
189 402 0.99
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (189 bp):
AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
CCCTATGTAATCTTCGGAATTTAAATATGAAGGGCTCAAGGGTAAAAAATGTATCGATC
Found at i:108641383 original size:19 final size:19
Alignment explanation
Indices: 108641336--108641382 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
108641326 TATAATTTTA
108641336 TATAATTTTTAATATATTT
1 TATAATTTTTAATATATTT
* *
108641355 CATAAGTTTTAA-ATATTT
1 TATAATTTTTAATATATTT
108641373 TATAATTTTT
1 TATAATTTTT
108641383 TTTATGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (19 bp):
TATAATTTTTAATATATTT
Found at i:108643534 original size:17 final size:17
Alignment explanation
Indices: 108643512--108643547 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
108643502 TAAGTCACAA
108643512 GCATATGTCTGATTCAG
1 GCATATGTCTGATTCAG
108643529 GCATATGTCTGATTCAG
1 GCATATGTCTGATTCAG
108643546 GC
1 GC
108643548 GAATTATTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (17 bp):
GCATATGTCTGATTCAG
Found at i:108647275 original size:30 final size:30
Alignment explanation
Indices: 108647241--108647310 Score: 140
Period size: 30 Copynumber: 2.3 Consensus size: 30
108647231 GCCCCCTCTA
108647241 AAATTATAAAAATTCAATTTAATCATTTAC
1 AAATTATAAAAATTCAATTTAATCATTTAC
108647271 AAATTATAAAAATTCAATTTAATCATTTAC
1 AAATTATAAAAATTCAATTTAATCATTTAC
108647301 AAATTATAAA
1 AAATTATAAA
108647311 GATATAAACT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.39
Consensus pattern (30 bp):
AAATTATAAAAATTCAATTTAATCATTTAC
Found at i:108648080 original size:16 final size:16
Alignment explanation
Indices: 108648059--108648092 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
108648049 TTGAAATCTT
*
108648059 AAGCTTTAAAATGGGA
1 AAGCTTGAAAATGGGA
108648075 AAGCTTGAAAATGGGA
1 AAGCTTGAAAATGGGA
108648091 AA
1 AA
108648093 CACTTTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.26, T:0.21
Consensus pattern (16 bp):
AAGCTTGAAAATGGGA
Found at i:108648965 original size:17 final size:17
Alignment explanation
Indices: 108648943--108648976 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
108648933 ATCCACTAAT
*
108648943 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
108648960 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
108648977 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:108653593 original size:17 final size:17
Alignment explanation
Indices: 108653571--108653604 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
108653561 ATCCACTAAT
*
108653571 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
108653588 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
108653605 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:108659961 original size:189 final size:188
Alignment explanation
Indices: 108659749--108660385 Score: 866
Period size: 189 Copynumber: 3.4 Consensus size: 188
108659739 CAATATTTCA
* *
108659749 AAGTTGGAATTCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCC
* *
108659814 AAGAAGCTTAACAGAATTAAACTTATCTGGCACCCAAATTGAAGAAGTGTCCTTACCTTTCGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
108659879 CCCTATGTAATCTTTAGAATTTAAATATGAGGGGCTCAAGGGTAAAAAGTGTATCGATC
131 CCCTATGTAATCTTTAGAATTTAAATATGAGGGGCTCAAGGGTAAAAA-TGTATCGATC
* *
108659938 AAGTTGGAATCCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATTAAATTTCCAGAAATCCT
1 AAGTTGGAATCCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCC
* * *
108660003 AAGAAGCTTAACAGAATTAAACTTATCTGGAACTTAAATTGAAGAAGTGTTCTTGCCTTTCGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
* *
108660068 CCCTATGTAATC-TTCGAAATTTAAATATGAGGGGCTCAAGGGTAAAAAATGTATCAATC
131 CCCTATGTAATCTTTAG-AATTTAAATATGAGGGGCTCAAGGGT-AAAAATGTATCGATC
* * * * *
108660127 AAGTTGGAATCCCTTCGTAAACTGAATCTTAATGATTGCCCAATGATCAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCC
* * * *
108660192 AAAAAGCTTAATAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCATTGCCTTTGGACT
66 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
** ** * * * * *
108660257 CTTTATGTAATCTTCGGGACTTAGATATGAGTGGCTC-TGCGGTTAAAAATGTATCGATC
131 CCCTATGTAATCTTTAGAATTTAAATATGAGGGGCTCAAG-GG-TAAAAATGTATCGATC
* * * * * * * *
108660316 AAGTTGGAATCTCTTCGT-TATCTAGATCTTAGTGGTTGCCCAATGGTCGAATTTCCAGAAATTC
1 AAGTTGGAATCCCTTCATCAAT-TGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCC
108660380 CAAGAA
65 CAAGAA
108660386 TTATATGGGA
Statistics
Matches: 398, Mismatches: 44, Indels: 12
0.88 0.10 0.03
Matches are distributed among these distances:
188 5 0.01
189 385 0.97
190 8 0.02
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (188 bp):
AAGTTGGAATCCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCC
AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
CCCTATGTAATCTTTAGAATTTAAATATGAGGGGCTCAAGGGTAAAAATGTATCGATC
Found at i:108663434 original size:39 final size:39
Alignment explanation
Indices: 108663376--108663671 Score: 470
Period size: 39 Copynumber: 7.5 Consensus size: 39
108663366 TAATGGAGAA
*
108663376 TTATATCCGGGCTAGGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
108663415 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
108663454 TTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
108663493 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
108663532 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
108663571 TTATATCCGGGCTAAG-CTCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTC-CCGAAGGCATTCGTGCTGGTG
* * * *
108663610 TTATATCCGGGCTAAAGTCTCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
108663649 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
108663672 TATGCTTTGT
Statistics
Matches: 241, Mismatches: 12, Indels: 7
0.93 0.05 0.03
Matches are distributed among these distances:
38 1 0.00
39 221 0.92
40 18 0.07
41 1 0.00
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:108671876 original size:47 final size:47
Alignment explanation
Indices: 108671780--108671982 Score: 277
Period size: 47 Copynumber: 4.3 Consensus size: 47
108671770 TGCACACTTT
* * *
108671780 TCACAATTGGTCATTCGGCCTTATCACATAT--TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACACTTTCACAT-TCA
** * * **
108671826 TCACATTAACCATTCGGCCTTATCTCATGTATGCACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
108671873 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
*
108671920 TCATATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
108671967 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
108671983 ATCTTAAGCT
Statistics
Matches: 139, Mismatches: 15, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
45 21 0.15
46 5 0.04
47 113 0.81
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
Found at i:108671970 original size:25 final size:25
Alignment explanation
Indices: 108671894--108671972 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
108671884 ATTCGGCCTT
108671894 ATCACATATACACACTTTCACATTC
1 ATCACATATACACACTTTCACATTC
* * * *
108671919 ATCATAT-TGGC-CA--TTCGGCCTT-
1 ATCACATAT-ACACACTTTC-ACATTC
108671941 ATCACATATACACACTTTCACATTC
1 ATCACATATACACACTTTCACATTC
108671966 ATCACAT
1 ATCACAT
108671973 TGGCCATTCG
Statistics
Matches: 39, Mismatches: 8, Indels: 14
0.64 0.13 0.23
Matches are distributed among these distances:
22 10 0.26
23 6 0.15
24 6 0.15
25 17 0.44
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATACACACTTTCACATTC
Found at i:108676352 original size:10 final size:10
Alignment explanation
Indices: 108676330--108676361 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
108676320 TAACAGTAGC
108676330 GCAAATGGACA
1 GCAAAT-GACA
108676341 GCAAATGACA
1 GCAAATGACA
108676351 GCAAATGACA
1 GCAAATGACA
108676361 G
1 G
108676362 TGATGAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.71
11 6 0.29
ACGTcount: A:0.47, C:0.19, G:0.25, T:0.09
Consensus pattern (10 bp):
GCAAATGACA
Found at i:108680990 original size:38 final size:38
Alignment explanation
Indices: 108680939--108681014 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
108680929 TCAAGCATAG
* *
108680939 CTGTCAAATATCTTGTAGCTATATACTTTCCTAAGAAT
1 CTGTCAAATATCTTGTAGATATATACTTTACTAAGAAT
*
108680977 CTGTCAAGTATCTTGTAGATATATACTTTACTAAGAAT
1 CTGTCAAATATCTTGTAGATATATACTTTACTAAGAAT
108681015 AGGTTACTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (38 bp):
CTGTCAAATATCTTGTAGATATATACTTTACTAAGAAT
Found at i:108681095 original size:22 final size:23
Alignment explanation
Indices: 108681070--108681117 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
108681060 TATTTTAGGA
* *
108681070 TGTGATT-AGGGATTTGATTTGC
1 TGTGATTAAGGAATTTAATTTGC
108681092 TGTGATTAAGGAATTTAATTTGC
1 TGTGATTAAGGAATTTAATTTGC
108681115 TGT
1 TGT
108681118 ACCAGTGCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.23, C:0.04, G:0.27, T:0.46
Consensus pattern (23 bp):
TGTGATTAAGGAATTTAATTTGC
Found at i:108683344 original size:14 final size:13
Alignment explanation
Indices: 108683311--108683346 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
108683301 CGAAATTAAA
*
108683311 TATTTAATTTTAT
1 TATTTAATATTAT
108683324 TATTTAATATTAT
1 TATTTAATATTAT
108683337 TAATTTAATA
1 T-ATTTAATA
108683347 ATGGAAGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTTAATATTAT
Found at i:108690426 original size:10 final size:10
Alignment explanation
Indices: 108690403--108690435 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
108690393 TAAATAAAAT
108690403 TATTT-TTAA
1 TATTTATTAA
*
108690412 TATTTATTTA
1 TATTTATTAA
108690422 TATTTATTAA
1 TATTTATTAA
108690432 TATT
1 TATT
108690436 AAATATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 5 0.24
10 16 0.76
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TATTTATTAA
Found at i:108698081 original size:17 final size:17
Alignment explanation
Indices: 108698061--108698122 Score: 79
Period size: 17 Copynumber: 3.5 Consensus size: 17
108698051 CAATGATATG
108698061 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
* *
108698078 CAATTTTAGATATGATTG
1 CAATCTTAGATATGA-TA
108698096 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
108698115 CAATCTTA
1 CAATCTTA
108698123 AAAGATATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
17 14 0.37
18 14 0.37
19 9 0.24
20 1 0.03
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:108698745 original size:25 final size:25
Alignment explanation
Indices: 108698711--108698762 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
108698701 CATCGTGTCC
108698711 TAACATGCTGGATGTGATGTTTGTA
1 TAACATGCTGGATGTGATGTTTGTA
108698736 TAACATGCTGGATGTGATGTTTGTA
1 TAACATGCTGGATGTGATGTTTGTA
108698761 TA
1 TA
108698763 CTTTCGGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.25, C:0.08, G:0.27, T:0.40
Consensus pattern (25 bp):
TAACATGCTGGATGTGATGTTTGTA
Found at i:108702410 original size:14 final size:14
Alignment explanation
Indices: 108702391--108702417 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
108702381 ATCGATTTCA
108702391 AAAAAAAAGAAAAG
1 AAAAAAAAGAAAAG
108702405 AAAAAAAAGAAAA
1 AAAAAAAAGAAAA
108702418 AAGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:108703927 original size:7 final size:7
Alignment explanation
Indices: 108703915--108703989 Score: 69
Period size: 7 Copynumber: 9.7 Consensus size: 7
108703905 CTATTTCAAA
108703915 AAAAAAG
1 AAAAAAG
*
108703922 AAAAAAAT
1 -AAAAAAG
*
108703930 AAGAAAAA
1 AA-AAAAG
108703938 AAAAAAG
1 AAAAAAG
108703945 AAAAAGAG
1 AAAAA-AG
108703953 AAAAAAAAG
1 --AAAAAAG
108703962 AAAAAAG
1 AAAAAAG
108703969 AGAAAAGAG
1 A-AAAA-AG
108703978 AAAAAAG
1 AAAAAAG
108703985 AAAAA
1 AAAAA
108703990 TGGAGAGGCC
Statistics
Matches: 58, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
7 26 0.45
8 22 0.38
9 5 0.09
10 5 0.09
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.01
Consensus pattern (7 bp):
AAAAAAG
Found at i:108703927 original size:9 final size:9
Alignment explanation
Indices: 108703913--108703974 Score: 70
Period size: 10 Copynumber: 6.4 Consensus size: 9
108703903 TTCTATTTCA
108703913 AAAAAAAAG
1 AAAAAAAAG
108703922 AAAAAAATAAG
1 -AAAAAA-AAG
*
108703933 AAAAAAAAA
1 AAAAAAAAG
108703942 AAGAAAAAGAG
1 AA-AAAAA-AG
108703953 AAAAAAAAG
1 AAAAAAAAG
*
108703962 AAAAAAGAG
1 AAAAAAAAG
108703971 AAAA
1 AAAA
108703975 GAGAAAAAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
9 18 0.39
10 22 0.48
11 6 0.13
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:108703938 original size:18 final size:17
Alignment explanation
Indices: 108703916--108703974 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 17
108703906 TATTTCAAAA
*
108703916 AAAAAGAAAAAAATAAGAA
1 AAAAA-AAAAAAA-AAGAG
108703935 AAAAAAAAAGAAAAAGAG
1 AAAAAAAAA-AAAAAGAG
108703953 AAAAAAAAGAAAAAAGAG
1 AAAAAAAA-AAAAAAGAG
108703971 AAAA
1 AAAA
108703975 GAGAAAAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 28 0.76
19 9 0.24
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.02
Consensus pattern (17 bp):
AAAAAAAAAAAAAAGAG
Found at i:108703983 original size:9 final size:9
Alignment explanation
Indices: 108703936--108703989 Score: 62
Period size: 9 Copynumber: 6.4 Consensus size: 9
108703926 AAATAAGAAA
*
108703936 AAAAAAAAG
1 AAAAAAGAG
108703945 -AAAAAGAG
1 AAAAAAGAG
*
108703953 AAAAAAAAG
1 AAAAAAGAG
108703962 AAAAAAGAG
1 AAAAAAGAG
108703971 --AAAAGAG
1 AAAAAAGAG
108703978 AAAAAAGA-
1 AAAAAAGAG
108703986 AAAA
1 AAAA
108703990 TGGAGAGGCC
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
7 7 0.18
8 11 0.28
9 21 0.54
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (9 bp):
AAAAAAGAG
Found at i:108703983 original size:18 final size:17
Alignment explanation
Indices: 108703936--108703989 Score: 76
Period size: 16 Copynumber: 3.3 Consensus size: 17
108703926 AAATAAGAAA
108703936 AAAAAAAAGAAAAAGAG
1 AAAAAAAAGAAAAAGAG
108703953 AAAAAAAAGAAAAA-AG
1 AAAAAAAAGAAAAAGAG
* *
108703969 AGAAAAGAGAAAAA-AG
1 AAAAAAAAGAAAAAGAG
108703985 AAAAA
1 AAAAA
108703990 TGGAGAGGCC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
16 20 0.59
17 14 0.41
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAGAG
Found at i:108703989 original size:23 final size:24
Alignment explanation
Indices: 108703915--108703983 Score: 95
Period size: 23 Copynumber: 2.9 Consensus size: 24
108703905 CTATTTCAAA
* * *
108703915 AAAAAAGAAAAAAATAAGAAAAA-
1 AAAAAAGAAAAAGAGAAAAAAAAG
108703938 AAAAAAGAAAAAGAGAAAAAAAAG
1 AAAAAAGAAAAAGAGAAAAAAAAG
108703962 AAAAAAGAGAAAAGAGAAAAAA
1 AAAAAAGA-AAAAGAGAAAAAA
108703984 GAAAAATGGA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.49
24 8 0.20
25 13 0.32
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.01
Consensus pattern (24 bp):
AAAAAAGAAAAAGAGAAAAAAAAG
Found at i:108704976 original size:43 final size:43
Alignment explanation
Indices: 108704929--108705071 Score: 141
Period size: 43 Copynumber: 3.3 Consensus size: 43
108704919 CGCCTTAACC
108704929 CCCTAAGCAGTAGGGTAACAGG-CTAAAATTATAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTC-AAAATTATAGATCTTATCT
* ** * *
108704972 CCCTAAGCAGTAGTGG-AACAGATCAACAACGACTCG-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTCAA-AATTA-TAGATCTT-ATCT
* * *
108705016 CCCTAAGCAATAGGGTAACAGGTCAAAATTGTGGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTCAAAATTATAGATCTTATCT
108705059 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
108705072 TGGAGCAGAT
Statistics
Matches: 79, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
42 5 0.06
43 39 0.49
44 30 0.38
45 5 0.06
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.24
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGTCAAAATTATAGATCTTATCT
Found at i:108705065 original size:87 final size:85
Alignment explanation
Indices: 108704918--108705126 Score: 300
Period size: 87 Copynumber: 2.5 Consensus size: 85
108704908 ACAAAATTCA
108704918 GCGCCTTAACCCCCTAAGCAGTAGGGTAACAGG-CTAAAATTATAGATCTTATCTCCCTAAGCAG
1 GCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTCTAAAATTATAGATCTTATCTCCCTAAGCAG
108704982 TAGTGGAACAGATCAACAACGACT
66 TAGTGGAACAGATC--CAA-GA-T
* * * *
108705006 -CGCCTTAATCCCCTAAGCAATAGGGTAACAGGTC-AAAATTGTGGATCTTATCTCCCTAAGCAG
1 GCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTCTAAAATTATAGATCTTATCTCCCTAAGCAG
* *
108705069 TAGTGGAGCAGATCGAAGAT
66 TAGTGGAACAGATCCAAGAT
108705089 GCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGT-TAAA
1 GCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTCTAAA
108705127 GTATAGCAGA
Statistics
Matches: 110, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
83 1 0.01
84 36 0.33
85 2 0.02
87 70 0.64
88 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.22
Consensus pattern (85 bp):
GCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTCTAAAATTATAGATCTTATCTCCCTAAGCAG
TAGTGGAACAGATCCAAGAT
Found at i:108705609 original size:207 final size:207
Alignment explanation
Indices: 108705251--108706373 Score: 1870
Period size: 207 Copynumber: 5.4 Consensus size: 207
108705241 CGGAGAGCAG
* * * * *
108705251 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTATGATGAAGCAAATCTAAGATGATTTGGGA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
* *
108705316 TCTCTGTATTGTCAAAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
*
108705381 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGTAAGATCCAAGATGGTTTGGCATCCTTGTGCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
108705446 TACAAGGAACAA
196 TACAAGGAACAA
* *
108705458 ATTGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAGTCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
* *
108705523 TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACAT
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
* *
108705588 AGTAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTATGCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
108705653 TACAAGGAACAA
196 TACAAGGAACAA
*
108705665 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGAA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
* * *
108705730 TCTCTGTATTGTTAGAGAACAAATCAAAGTTTGGCGTCTCCATGTTTGACGGAGGGCAGACACAT
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
108705795 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
*
108705860 TATAAGGAACAA
196 TACAAGGAACAA
108705872 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
* *
108705937 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGTGCAGACACAA
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
* * *
108706002 AGCAGATCTGGCCTTCAGATGTTTATACTAAAACAAGATCCAAGATGGTTTGGCATCCTTGTCCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
108706067 TACAAGGAACAA
196 TACAAGGAACAA
* *
108706079 ATCGAAGGCATAGCTGATTTGGATTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
* * *
108706144 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGACAGACATAT
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
** * * * *
108706209 AGCAGATCTAACCTTCAGATGATTAGACTGAAGC-AGATCCAAGATGGTTTGGTATCATTGTGCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
*
108706273 TACAAGGAGCAA
196 TACAAGGAACAA
* * *
108706285 ATCGAAGACATAGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
* *
108706350 TCTCTGTATTATCAGGGAACAAAT
66 TCTCTGTATTGTCAGAGAACAAAT
108706374 TGAAGAAGCA
Statistics
Matches: 859, Mismatches: 57, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
206 120 0.14
207 739 0.86
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
TACAAGGAACAA
Found at i:108706797 original size:19 final size:19
Alignment explanation
Indices: 108706772--108706895 Score: 179
Period size: 19 Copynumber: 6.8 Consensus size: 19
108706762 ATAATCTTCA
108706772 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
108706791 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
108706810 ATGATA--CAATTTTAGAT
1 ATGATATGCAATCTTAGAT
108706827 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
108706845 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
108706862 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
108706880 ATGATATACAATCTTA
1 ATGATATGCAATCTTA
108706896 AAAGATATGA
Statistics
Matches: 94, Mismatches: 5, Indels: 12
0.85 0.05 0.11
Matches are distributed among these distances:
17 31 0.33
18 31 0.33
19 32 0.34
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:108706841 original size:35 final size:35
Alignment explanation
Indices: 108706780--108706895 Score: 187
Period size: 35 Copynumber: 3.2 Consensus size: 35
108706770 CAATGATATG
*
108706780 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
*
108706816 CAATTTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
108706851 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
108706888 CAATCTTA
1 CAATCTTA
108706896 AAAGATATGA
Statistics
Matches: 75, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
35 50 0.67
36 14 0.19
37 11 0.15
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:108708528 original size:31 final size:30
Alignment explanation
Indices: 108708467--108708533 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
108708457 CTAGTCTTAC
*
108708467 ATCAACATAAAAGCCTAATTTATAAGAAAAA
1 ATCAA-ATAAAAGCCTAAGTTATAAGAAAAA
108708498 ATCAAATAAAAGCCTAAGTTATAAGAAAAA
1 ATCAAATAAAAGCCTAAGTTATAAGAAAAA
108708528 ATCAAA
1 ATCAAA
108708534 CTTTCTGATT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 30 0.86
31 5 0.14
ACGTcount: A:0.60, C:0.12, G:0.07, T:0.21
Consensus pattern (30 bp):
ATCAAATAAAAGCCTAAGTTATAAGAAAAA
Found at i:108713400 original size:15 final size:15
Alignment explanation
Indices: 108713380--108713414 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
108713370 AGAAGAGGAA
108713380 AAAGAATAAGCCATG
1 AAAGAATAAGCCATG
108713395 AAAGAATAAGCCATG
1 AAAGAATAAGCCATG
108713410 AAAGA
1 AAAGA
108713415 GTAGTTAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.57, C:0.11, G:0.20, T:0.11
Consensus pattern (15 bp):
AAAGAATAAGCCATG
Found at i:108725779 original size:5 final size:5
Alignment explanation
Indices: 108725769--108725800 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
108725759 TTGTGTGTTC
108725769 TTTAT TTTAT TTTA- TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
108725801 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:108725788 original size:14 final size:14
Alignment explanation
Indices: 108725769--108725799 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
108725759 TTGTGTGTTC
108725769 TTTATTTTATTTTA
1 TTTATTTTATTTTA
108725783 TTTATTTTATTTTA
1 TTTATTTTATTTTA
108725797 TTT
1 TTT
108725800 TTCACAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:108728839 original size:41 final size:41
Alignment explanation
Indices: 108728782--108728864 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
108728772 TTTAGACAGT
108728782 TGTGTTTACTTTAAGAAAAACAGTGATGGTTCTTTTGTGTA
1 TGTGTTTACTTTAAGAAAAACAGTGATGGTTCTTTTGTGTA
*
108728823 TGTGTTTACTTTAAGAAAAATAGTGATGGTTCTTTTGTGTA
1 TGTGTTTACTTTAAGAAAAACAGTGATGGTTCTTTTGTGTA
108728864 T
1 T
108728865 CTACTTCTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.27, C:0.06, G:0.22, T:0.46
Consensus pattern (41 bp):
TGTGTTTACTTTAAGAAAAACAGTGATGGTTCTTTTGTGTA
Found at i:108730260 original size:5 final size:5
Alignment explanation
Indices: 108730250--108730281 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
108730240 ATTTGTGTTC
108730250 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
108730282 TCACATTAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:108730264 original size:9 final size:9
Alignment explanation
Indices: 108730250--108730280 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
108730240 ATTTGTGTTC
108730250 TTTATTTTA
1 TTTATTTTA
108730259 TTTATTTTA
1 TTTATTTTA
108730268 TTTTATTTTA
1 -TTTATTTTA
108730278 TTT
1 TTT
108730281 TTCACATTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:108736179 original size:38 final size:38
Alignment explanation
Indices: 108736136--108736245 Score: 157
Period size: 38 Copynumber: 2.9 Consensus size: 38
108736126 AGATTGGTAC
* * *
108736136 TAAATGGCCCCTATGCAATGTTGTTTTCTTCTTGAATT
1 TAAATGGCCCCTATCCAATGTTGTTTTCTTCCTGAACT
* *
108736174 TAAATGGCCCCTGTCCAATGTTGTTTACTTCCTGAACT
1 TAAATGGCCCCTATCCAATGTTGTTTTCTTCCTGAACT
* *
108736212 TAAGTGGCCCCTTTCCAATGTTGTTTTCTTCCTG
1 TAAATGGCCCCTATCCAATGTTGTTTTCTTCCTG
108736246 TATCAAATGG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (38 bp):
TAAATGGCCCCTATCCAATGTTGTTTTCTTCCTGAACT
Found at i:108737499 original size:46 final size:46
Alignment explanation
Indices: 108737434--108737617 Score: 253
Period size: 46 Copynumber: 4.0 Consensus size: 46
108737424 TTATCTTTTA
* * * * * *
108737434 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
***
108737480 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
108737526 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
108737572 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
108737618 TTCAACCATG
Statistics
Matches: 125, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 121 0.97
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:108737629 original size:28 final size:28
Alignment explanation
Indices: 108737589--108737645 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
108737579 CCATGGTATC
108737589 TTTCAACCATGGTCTTACACATTTCATA
1 TTTCAACCATGGTCTTACACATTTCATA
108737617 TTTCAACCATGGTCTTACACATTTCATA
1 TTTCAACCATGGTCTTACACATTTCATA
108737645 T
1 T
108737646 CAGGTTGCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (28 bp):
TTTCAACCATGGTCTTACACATTTCATA
Found at i:108737630 original size:74 final size:74
Alignment explanation
Indices: 108737543--108737691 Score: 298
Period size: 74 Copynumber: 2.0 Consensus size: 74
108737533 CCATGGTATC
108737543 TTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 TTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
108737608 CATTTCATA
66 CATTTCATA
108737617 TTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 TTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
108737682 CATTTCATA
66 CATTTCATA
108737691 T
1 T
108737692 CAGAGAGCAC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (74 bp):
TTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
CATTTCATA
Found at i:108747385 original size:14 final size:14
Alignment explanation
Indices: 108747366--108747401 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
108747356 CAATGATTTC
*
108747366 TTATTTATTTATTA
1 TTATTTATTAATTA
*
108747380 TTATTTAATAATTA
1 TTATTTATTAATTA
108747394 TTATTTAT
1 TTATTTAT
108747402 AGTATTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATTTATTAATTA
Found at i:108752503 original size:9 final size:9
Alignment explanation
Indices: 108752489--108752520 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
108752479 AACTTGGTGC
108752489 ATTTTGTTT
1 ATTTTGTTT
108752498 ATTTTGTTT
1 ATTTTGTTT
108752507 ATTTTGTTT
1 ATTTTGTTT
108752516 ATTTT
1 ATTTT
108752521 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:108764082 original size:21 final size:21
Alignment explanation
Indices: 108764056--108764096 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
108764046 ATCTGCTCAA
* *
108764056 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
108764077 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
108764097 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:108777795 original size:21 final size:21
Alignment explanation
Indices: 108777769--108777809 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
108777759 AGACGAGCAA
* *
108777769 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
108777790 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
108777810 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:108780499 original size:6 final size:6
Alignment explanation
Indices: 108780488--108780514 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
108780478 TTTTGAGGCC
108780488 CTTTGA CTTTGA CTTTGA CTTTGA CTT
1 CTTTGA CTTTGA CTTTGA CTTTGA CTT
108780515 AGTATCATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.19, G:0.15, T:0.52
Consensus pattern (6 bp):
CTTTGA
Found at i:108794627 original size:20 final size:20
Alignment explanation
Indices: 108794602--108794651 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
108794592 TGGCTTAAAA
108794602 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
108794622 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
108794639 GTGGTAGTGGATT
1 TTGGTAGTGGATT
108794652 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:108795393 original size:23 final size:23
Alignment explanation
Indices: 108795363--108795409 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
108795353 ATAGTGCTAT
108795363 TCTGCTATGTCTAGGAGATGAAG
1 TCTGCTATGTCTAGGAGATGAAG
108795386 TCTGCTATGTCTAGGAGATGAAG
1 TCTGCTATGTCTAGGAGATGAAG
108795409 T
1 T
108795410 GCTACGAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (23 bp):
TCTGCTATGTCTAGGAGATGAAG
Found at i:108799280 original size:20 final size:20
Alignment explanation
Indices: 108799255--108799304 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
108799245 TGGCTTAAAA
108799255 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
108799275 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
108799292 GTGGTAGTGGATT
1 TTGGTAGTGGATT
108799305 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:108801803 original size:20 final size:20
Alignment explanation
Indices: 108801778--108801827 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
108801768 TGGCTTAAAA
108801778 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
108801798 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
108801815 GTGGTAGTGGATT
1 TTGGTAGTGGATT
108801828 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:108806431 original size:20 final size:20
Alignment explanation
Indices: 108806406--108806455 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
108806396 TGGCTTAAAA
108806406 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
108806426 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
108806443 GTGGTAGTGGATT
1 TTGGTAGTGGATT
108806456 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:108807164 original size:39 final size:38
Alignment explanation
Indices: 108806996--108807164 Score: 194
Period size: 39 Copynumber: 4.3 Consensus size: 38
108806986 TATTTTATGT
* * * *
108806996 GGATGAAGATCAGTTTGATGAGATGAGCAAAGATGTATC
1 GGATGAAGATCA-ATTGATGAGACGAGCAATGATGCATC
* * *
108807035 GGGTGAAGGTCAGATTGATGAGACGAGCAATGATGAATC
1 GGATGAAGATCA-ATTGATGAGACGAGCAATGATGCATC
* * *
108807074 AGATGAAGATCAGATTGATGAGACGAGCAGTGAGGCATC
1 GGATGAAGATCA-ATTGATGAGACGAGCAATGATGCATC
* *
108807113 GGATGAAGATCAATTCGATAAGACGAGCAGTGATGCATC
1 GGATGAAGATCAATT-GATGAGACGAGCAATGATGCATC
108807152 GGATGAAGATCAA
1 GGATGAAGATCAA
108807165 GAAAAGTTCA
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 3 0.03
39 111 0.97
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21
Consensus pattern (38 bp):
GGATGAAGATCAATTGATGAGACGAGCAATGATGCATC
Found at i:108810756 original size:142 final size:142
Alignment explanation
Indices: 108810260--108811665 Score: 1691
Period size: 142 Copynumber: 9.9 Consensus size: 142
108810250 AAAAATGTGA
* *
108810260 TTGTTGTCATTGATGATGTTAATGACCCAGATTAGATAGATTGTATGAGTGTTAAATATTTTAGT
1 TTGTTGTCATTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGT
* * *
108810325 GATGGAAGTAGAATTATTTTAACAACTCAAAATAGATAAAGATGGGTTAACTA-GGTAAAGGACT
66 GATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAAC-AGGGTAAAGGACT
108810389 TTCTT-AGGTCTT
130 TTCTTCAGGTCTT
* * *
108810401 TTGTTGTCATTGATGATGTTAATGGCCCATATTAGATAGATTGTATGGGTGTTAAATATTTTAGT
1 TTGTTGTCATTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGT
* * * *
108810466 GATGGAAGTAGAATCATTGTAACATCT-AGAGATAGACAAAGATGGGTTAACAAGG-AAAAGAGC
66 GATGGAAGTAGAATCATTGTAACATCTCA-AAATAGATAAAGATGGGTTAACAGGGTAAAGGA-C
108810529 TTTCTTCAGGTC--
129 TTTCTTCAGGTCTT
*
108810541 -TGTTGTCCTTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGT
1 TTGTTGTCATTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGT
* *
108810605 GATGGAAGTAGAACCATTATAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGACTT
66 GATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGACTT
*
108810670 TCTTCAAGTCTT
131 TCTTCAGGTCTT
* * * *
108810682 TTGTTGTCATTGATGATGTTAATGACCCAGATTAGATAGATTGTATGGGTATTTAATATTTTGGT
1 TTGTTGTCATTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGT
* * * * * *
108810747 GATGGAAGTAG-ATCCATTGTAACATCTCGAGATAGACAAAGATGGGTTAACAAGGAAAATGACT
66 GATGGAAGTAGAAT-CATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGACT
*
108810811 TTCTTTAGGTC--
130 TTCTTCAGGTCTT
* * * *
108810822 -TGTTGTCCTTGATGATATTAATGACCCAAAATTCGATAGATTGTATGGGTATTAAATATTTTAG
1 TTGTTGTCATTGATGATATTAATGACCC-AGATTAGATAGATTGTATGGGTGTTAAATATTTTAG
108810886 TGATGGGTTGAAGAATCTTATTAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTA
65 TGA-----TG--G------A--AGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTA
* *
108810951 ATAAGGTAAAGGACTTTCTTCAGGTCTT
115 ACAGGGTAAAGGACTTTCTTCAGGTCTT
* * * * *
108810979 TCGTTGTCATTGATGATGTTAATAACCGAGATTAGATAGATTGTATGGGTGTTAAATATTTTGGT
1 TTGTTGTCATTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGT
* * * * * * *
108811044 GATGGAAGTCGAATCATTGTAACATCTCGAGATAGACAAAGACGGGTTAACAGGGAAAAGGATTT
66 GATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGACTT
108811109 TCTTCAGG-C--
131 TCTTCAGGTCTT
* * * * *
108811118 CTGTTGTCCTTAATGATATTAATGACCTAGATTAGATAGATTGTATGGGTGTTAAATATTCTT-C
1 TTGTTGTCATTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATT-TTAG
* * * * *
108811182 TGATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAATGTTTGGTTAATAGTGTAAACGG-C
65 TGATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAA-GGAC
108811246 TTTCTTCAGGTCTT
129 TTTCTTCAGGTCTT
*
108811260 TTGTTGTCATTGATGATATTAATGACTCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGT
1 TTGTTGTCATTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGT
* * * *
108811325 GATGGAAGTAGAGTCATTATAAAATCTCAAAATAGATAAAGATGGGTTAACAAGGTAAAGGACTT
66 GATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGACTT
*
108811390 TCTTCTGGTCTT
131 TCTTCAGGTCTT
* *
108811402 TTGTTGTCATTGATGATGTTAATGACCCAGATT-GAATAGATTGTATGGGTGTTAAATATGTTAA
1 TTGTTGTCATTGATGATATTAATGACCCAGATTAG-ATAGATTGTATGGGTGTTAAATAT-TTTA
* * * * *
108811466 GTGATAGAAGTAGAATCATTGTAACATCTCTAGATAGACAAAGAT--G-----AGGGAAAAGGAC
64 GTGATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGAC
108811524 TTT-TTGCAGG-C--
129 TTTCTT-CAGGTCTT
* * * * * *
108811535 CTGTTGTCCTTAATAATATTAATGACTCTA-ATTAGATAGATTTTATGGGTGTTAAATATTTTAG
1 TTGTTGTCATTGATGATATTAATGAC-CCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAG
* *
108811599 AGATGGAAGTAGAATCATTGTAACTTCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGACT
65 TGATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGACT
108811664 TT
130 TT
108811666 GCTTAATCTT
Statistics
Matches: 1086, Mismatches: 130, Indels: 100
0.83 0.10 0.08
Matches are distributed among these distances:
132 42 0.04
133 47 0.04
134 4 0.00
135 3 0.00
136 16 0.01
139 271 0.25
140 53 0.05
141 123 0.11
142 360 0.33
143 41 0.04
144 1 0.00
145 2 0.00
147 1 0.00
150 1 0.00
152 2 0.00
153 1 0.00
155 59 0.05
156 2 0.00
157 35 0.03
158 22 0.02
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.35
Consensus pattern (142 bp):
TTGTTGTCATTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGT
GATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGACTT
TCTTCAGGTCTT
Found at i:108810815 original size:281 final size:281
Alignment explanation
Indices: 108810261--108811665 Score: 1786
Period size: 281 Copynumber: 5.0 Consensus size: 281
108810251 AAAATGTGAT
* * *
108810261 TGTTGTCATTGATGATGTTAATGACCCAGATTAGATAGATTGTATGAGTGTTAAATATTTTAGTG
1 TGTTGTCCTTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGTG
* * *
108810326 ATGGAAGTAGAATTATTTTAACAACTCAAAATAGATAAAGATGGGTTAACTA-GGTAAAGGACTT
66 ATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAAC-AGGGTAAAGGACTT
* *
108810390 TCTT-AGGTCTTTTGTTGTCATTGATGATGTTAATGGCCCATATTAGATAGATTGTATGGGTGTT
130 TCTTCAGGTCTTTTGTTGTCATTGATGATGTTAATGACCCAGATTAGATAGATTGTATGGGTGTT
*
108810454 AAATATTTTAGTGATGGAAGTAGAATCATTGTAACATCTAGAGATAGACAAAGATGGGTTAACAA
195 AAATATTTTAGTGATGGAAGTAGAATCATTGTAACATCTCGAGATAGACAAAGATGGGTTAACAA
108810519 GGAAAA-GAGCTTTCTTCAGGTC
260 GGAAAAGGA-CTTTCTTCAGGTC
108810541 TGTTGTCCTTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGTG
1 TGTTGTCCTTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGTG
* *
108810606 ATGGAAGTAGAACCATTATAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGACTTT
66 ATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGACTTT
* * *
108810671 CTTCAAGTCTTTTGTTGTCATTGATGATGTTAATGACCCAGATTAGATAGATTGTATGGGTATTT
131 CTTCAGGTCTTTTGTTGTCATTGATGATGTTAATGACCCAGATTAGATAGATTGTATGGGTGTTA
*
108810736 AATATTTTGGTGATGGAAGTAG-ATCCATTGTAACATCTCGAGATAGACAAAGATGGGTTAACAA
196 AATATTTTAGTGATGGAAGTAGAAT-CATTGTAACATCTCGAGATAGACAAAGATGGGTTAACAA
* *
108810800 GGAAAATGACTTTCTTTAGGTC
260 GGAAAAGGACTTTCTTCAGGTC
* * *
108810822 TGTTGTCCTTGATGATATTAATGACCCAAAATTCGATAGATTGTATGGGTATTAAATATTTTAGT
1 TGTTGTCCTTGATGATATTAATGACCC-AGATTAGATAGATTGTATGGGTGTTAAATATTTTAGT
108810887 GATGGGTTGAAGAATCTTATTAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAA
65 GA-----TG--G------A--AGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAA
* * * * *
108810952 TAAGGTAAAGGACTTTCTTCAGGTCTTTCGTTGTCATTGATGATGTTAATAACCGAGATTAGATA
115 CAGGGTAAAGGACTTTCTTCAGGTCTTTTGTTGTCATTGATGATGTTAATGACCCAGATTAGATA
* *
108811017 GATTGTATGGGTGTTAAATATTTTGGTGATGGAAGTCGAATCATTGTAACATCTCGAGATAGACA
180 GATTGTATGGGTGTTAAATATTTTAGTGATGGAAGTAGAATCATTGTAACATCTCGAGATAGACA
* * * *
108811082 AAGACGGGTTAACAGGGAAAAGGATTTTCTTCAGGCC
245 AAGATGGGTTAACAAGGAAAAGGACTTTCTTCAGGTC
* * *
108811119 TGTTGTCCTTAATGATATTAATGACCTAGATTAGATAGATTGTATGGGTGTTAAATATTCTT-CT
1 TGTTGTCCTTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATT-TTAGT
* * * * *
108811183 GATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAATGTTTGGTTAATAGTGTAAACGG-CT
65 GATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAA-GGACT
* *
108811247 TTCTTCAGGTCTTTTGTTGTCATTGATGATATTAATGACTCAGATTAGATAGATTGTATGGGTGT
129 TTCTTCAGGTCTTTTGTTGTCATTGATGATGTTAATGACCCAGATTAGATAGATTGTATGGGTGT
* * * * * *
108811312 TAAATATTTTAGTGATGGAAGTAGAGTCATTATAAAATCTCAAAATAGATAAAGATGGGTTAACA
194 TAAATATTTTAGTGATGGAAGTAGAATCATTGTAACATCTCGAGATAGACAAAGATGGGTTAACA
* *
108811377 AGGTAAAGGACTTTCTTCTGGTC
259 AGGAAAAGGACTTTCTTCAGGTC
* *
108811400 TTTTGTTGTCATTGATGATGTTAATGACCCAGATT-GAATAGATTGTATGGGTGTTAAATATGTT
1 ---TGTTGTCCTTGATGATATTAATGACCCAGATTAG-ATAGATTGTATGGGTGTTAAATAT-TT
* * * * * *
108811464 AAGTGATAGAAGTAGAATCATTGTAACATCTCTAGATAGACAAAGAT--G-----AGGGAAAAGG
61 TAGTGATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGG
* * * * * * *
108811522 ACTTT-TTGCAGG-C--CTGTTGTCCTTAATAATATTAATGACTCTA-ATTAGATAGATTTTATG
126 ACTTTCTT-CAGGTCTTTTGTTGTCATTGATGATGTTAATGAC-CCAGATTAGATAGATTGTATG
* * * * *
108811582 GGTGTTAAATATTTTAGAGATGGAAGTAGAATCATTGTAACTTCTCAAAATAGATAAAGATGGGT
189 GGTGTTAAATATTTTAGTGATGGAAGTAGAATCATTGTAACATCTCGAGATAGACAAAGATGGGT
* *
108811647 TAACAGGGTAAAGGACTTT
254 TAACAAGGAAAAGGACTTT
108811666 GCTTAATCTT
Statistics
Matches: 1001, Mismatches: 92, Indels: 69
0.86 0.08 0.06
Matches are distributed among these distances:
275 116 0.12
276 1 0.00
277 5 0.00
278 14 0.01
279 1 0.00
280 126 0.13
281 344 0.34
282 40 0.04
283 3 0.00
284 53 0.05
285 39 0.04
287 2 0.00
289 2 0.00
291 2 0.00
295 1 0.00
296 32 0.03
297 218 0.22
298 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.35
Consensus pattern (281 bp):
TGTTGTCCTTGATGATATTAATGACCCAGATTAGATAGATTGTATGGGTGTTAAATATTTTAGTG
ATGGAAGTAGAATCATTGTAACATCTCAAAATAGATAAAGATGGGTTAACAGGGTAAAGGACTTT
CTTCAGGTCTTTTGTTGTCATTGATGATGTTAATGACCCAGATTAGATAGATTGTATGGGTGTTA
AATATTTTAGTGATGGAAGTAGAATCATTGTAACATCTCGAGATAGACAAAGATGGGTTAACAAG
GAAAAGGACTTTCTTCAGGTC
Found at i:108813059 original size:75 final size:75
Alignment explanation
Indices: 108812968--108813106 Score: 224
Period size: 75 Copynumber: 1.9 Consensus size: 75
108812958 TCAAACTGAC
*
108812968 ACATGCCTTAACTTCATCACTTATCTACTCAAAGCTGTGAAAGAGGCAATGATGAAGGTCTTCTT
1 ACATGCCTTAACTTCATCACTCATCTACTCAAAGCTGTGAAAGAGGCAATGATGAAGGTCTTCTT
108813033 CTTCTTCTTT
66 CTTCTTCTTT
* * * * *
108813043 ACATGCTTTAACTTCATCACTCATCTACTCAAAGCTTTGAAAGAGGTAATTATGAATGTCTTCT
1 ACATGCCTTAACTTCATCACTCATCTACTCAAAGCTGTGAAAGAGGCAATGATGAAGGTCTTCT
108813107 CCCATGATGA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 58 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.36
Consensus pattern (75 bp):
ACATGCCTTAACTTCATCACTCATCTACTCAAAGCTGTGAAAGAGGCAATGATGAAGGTCTTCTT
CTTCTTCTTT
Found at i:108816944 original size:98 final size:99
Alignment explanation
Indices: 108816835--108817032 Score: 335
Period size: 99 Copynumber: 2.0 Consensus size: 99
108816825 TTCTAGAAAT
* * *
108816835 AGATGCAAGATG-TTTTGAAATGATTGATTTAGGTTTGATGACTTATTTTCTTAGCTTTGAAGTG
1 AGATGCAAGATGTTTTTAAAATGATTGATTTAGGTTTGATGACTTATTTTCTTAGCATGGAAGTG
108816899 AATCAAATTGAACATGGCATCCTCATAAGCCAAC
66 AATCAAATTGAACATGGCATCCTCATAAGCCAAC
*
108816933 AGATGTAAGATGTTTTTAAAATGATTGATTTAGGTTTGATGACTTATTTTCTTAGCATGGAAGTG
1 AGATGCAAGATGTTTTTAAAATGATTGATTTAGGTTTGATGACTTATTTTCTTAGCATGGAAGTG
* *
108816998 AATCAGATTGAACATGGCATCTTCATAAGCCAAC
66 AATCAAATTGAACATGGCATCCTCATAAGCCAAC
108817032 A
1 A
108817033 AGCTTTTGCA
Statistics
Matches: 93, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 11 0.12
99 82 0.88
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (99 bp):
AGATGCAAGATGTTTTTAAAATGATTGATTTAGGTTTGATGACTTATTTTCTTAGCATGGAAGTG
AATCAAATTGAACATGGCATCCTCATAAGCCAAC
Found at i:108818334 original size:168 final size:167
Alignment explanation
Indices: 108818056--108818391 Score: 627
Period size: 168 Copynumber: 2.0 Consensus size: 167
108818046 AATGTAATGA
108818056 AGCTATTTATGCAAATTGTATTGCTACTAATTATAGTAATGAGAGTTGTCAATTTTTCTCTCAAC
1 AGCTATTTATGCAAATTGTATTGCTACTAATTATAGTAATGAGAGTTGTCAATTTTTCTCTCAAC
108818121 CGATTTGTTTTTACTTCTGTTTTTCAACTTTCAAACACAAATTTTCTTTGTTTTGATCTTTGGAT
66 CGATTTGTTTTTACTTCTGTTTTTCAACTTTCAAACACAAATTTTCTTTGTTTTGATCTTTGGAT
*
108818186 GTTGATATAACTCAACAAACTGTCATGCTCTAGTCCG
131 GCTGATATAACTCAACAAACTGTCATGCTCTAGTCCG
108818223 AGCTATTTATGCAAATTGTATTGCTACTAATTATAGTAATGAGAGTTGTCAATTTTTTCTCTCAA
1 AGCTATTTATGCAAATTGTATTGCTACTAATTATAGTAATGAGAGTTGTCAA-TTTTTCTCTCAA
* *
108818288 CCGATTTGTTTTTGCTTCTGTTTTTCATCTTTCAAACACAAATTTTCTTTGTTTTGATCTTTGGA
65 CCGATTTGTTTTTACTTCTGTTTTTCAACTTTCAAACACAAATTTTCTTTGTTTTGATCTTTGGA
*
108818353 TGCTGATATAGCTCAACAAACTGTCATGCTCTAGTCCG
130 TGCTGATATAACTCAACAAACTGTCATGCTCTAGTCCG
108818391 A
1 A
108818392 AGCTTCAAGC
Statistics
Matches: 164, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
167 52 0.32
168 112 0.68
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.44
Consensus pattern (167 bp):
AGCTATTTATGCAAATTGTATTGCTACTAATTATAGTAATGAGAGTTGTCAATTTTTCTCTCAAC
CGATTTGTTTTTACTTCTGTTTTTCAACTTTCAAACACAAATTTTCTTTGTTTTGATCTTTGGAT
GCTGATATAACTCAACAAACTGTCATGCTCTAGTCCG
Found at i:108822665 original size:14 final size:14
Alignment explanation
Indices: 108822646--108822694 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
108822636 TACCAAGGAA
108822646 GATTTTCTTGGCCT
1 GATTTTCTTGGCCT
***
108822660 GATTTTCTT--TAA
1 GATTTTCTTGGCCT
108822672 GATTTTCTTGGCCT
1 GATTTTCTTGGCCT
108822686 GATTTTCTT
1 GATTTTCTT
108822695 TAAGCCAAAG
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
12 9 0.33
14 18 0.67
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.55
Consensus pattern (14 bp):
GATTTTCTTGGCCT
Found at i:108822680 original size:26 final size:26
Alignment explanation
Indices: 108822644--108822698 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
108822634 CATACCAAGG
108822644 AAGATTTTCTTGGCCTGATTTTCTTT
1 AAGATTTTCTTGGCCTGATTTTCTTT
108822670 AAGATTTTCTTGGCCTGATTTTCTTT
1 AAGATTTTCTTGGCCTGATTTTCTTT
108822696 AAG
1 AAG
108822699 CCAAAGATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.18, C:0.15, G:0.16, T:0.51
Consensus pattern (26 bp):
AAGATTTTCTTGGCCTGATTTTCTTT
Found at i:108824291 original size:13 final size:15
Alignment explanation
Indices: 108824238--108824288 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
108824228 ATAAATTAAA
* *
108824238 TTTAACATTTAATAT
1 TTTAACACTTAATTT
*
108824253 TTTAATA-TATAATTT
1 TTTAACACT-TAATTT
108824268 TTTAACACTTAATTT
1 TTTAACACTTAATTT
108824283 TTTAAC
1 TTTAAC
108824289 TTATCATACA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
14 1 0.03
15 29 0.94
16 1 0.03
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTAACACTTAATTT
Found at i:108826607 original size:17 final size:16
Alignment explanation
Indices: 108826577--108826610 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
108826567 GTGTAATTTT
*
108826577 TTTTTAATAATTTAAA
1 TTTTTAAAAATTTAAA
108826593 TTTTTAAAAAGTTTAAA
1 TTTTTAAAAA-TTTAAA
108826610 T
1 T
108826611 GAAAAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTTTAAAAATTTAAA
Found at i:108827391 original size:20 final size:20
Alignment explanation
Indices: 108827366--108827415 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
108827356 TGGCTTAAAA
108827366 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
108827386 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
108827403 GTGGTAGTGGATT
1 TTGGTAGTGGATT
108827416 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:108832020 original size:20 final size:20
Alignment explanation
Indices: 108831995--108832044 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
108831985 TGGCTTAAAA
108831995 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
108832015 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
108832032 GTGGTAGTGGATT
1 TTGGTAGTGGATT
108832045 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:108836600 original size:21 final size:21
Alignment explanation
Indices: 108836574--108836614 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
108836564 ATCTGCTCAA
* *
108836574 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
108836595 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
108836615 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:108841612 original size:189 final size:189
Alignment explanation
Indices: 108841280--108841798 Score: 625
Period size: 189 Copynumber: 2.7 Consensus size: 189
108841270 GTTGGAATCA
* * * * * *
108841280 CTTCATGATCTGGATCTTAGTCATTGCTCAATAGCCGAATTCCCAAAAATCCCAAGAAGCTTGAC
1 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGACGAATTCCCAGAAATCCCAAGAAGCTTAAC
* * * * *
108841345 AGAATTAAACTTATCTGAAACTCAAATTGAAGATGTGTGCTTGTCTAGCGACACTCCAAGCAATC
66 AGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTCCTTGTCTATCGACTCTCCAAGCAATC
* * **
108841410 TTCAGAAGTTAGATATGAGTGGCTCAAGGGTGAAA-AATGTATCCATCAAGATGGATTCC
131 TTCAGAAGTTAGATATGAGGGGCTCAAGAGT-AAAGAATGTATCCATCAAGATGGAAGCC
* * * *
108841469 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGTCAAATTTCCC-GAAATCCTAAGAACCTTAA
1 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGACGAA-TTCCCAGAAATCCCAAGAAGCTTAA
* * * ** *
108841533 CAAAATTAAACTTATCTGGAACTCAAATTGAAGAGGTGTCCTTGTCTCTCGACTCTGTAGGCAAT
65 CAGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTCCTTGTCTATCGACTCTCCAAGCAAT
*
108841598 CTTCA-AACGTTAGATATGAGGGGCTCAAGAGTAAAGAATGTATCGATCAAGATGGAAGCC
130 CTTCAGAA-GTTAGATATGAGGGGCTCAAGAGTAAAGAATGTATCCATCAAGATGGAAGCC
*
108841658 CTCCGTGATCTGAATCTTAGTCATTGCCCAATA-ACTGAATTCCCAGAAATCCCAAGAAGCTTAA
1 CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGAC-GAATTCCCAGAAATCCCAAGAAGCTTAA
* * * * * * * **
108841722 GAGAATTAAATTTATCTGGGACTCAAATT-AAGGAAGTGACCTTGTCTTTAGACTCTCTAAATAA
65 CAGAATTAAACTTATCTGGAACTCAAATTGAA-GAAGTGTCCTTGTCTATCGACTCTCCAAGCAA
*
108841786 TCTTCAGATGTTA
129 TCTTCAGAAGTTA
108841799 AAGATGAGCT
Statistics
Matches: 281, Mismatches: 42, Indels: 14
0.83 0.12 0.04
Matches are distributed among these distances:
188 13 0.05
189 262 0.93
190 6 0.02
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (189 bp):
CTTCGTGATCTGAATCTTAGTCATTGCCCAATAGACGAATTCCCAGAAATCCCAAGAAGCTTAAC
AGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTCCTTGTCTATCGACTCTCCAAGCAATC
TTCAGAAGTTAGATATGAGGGGCTCAAGAGTAAAGAATGTATCCATCAAGATGGAAGCC
Found at i:108844806 original size:20 final size:20
Alignment explanation
Indices: 108844781--108844830 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
108844771 TGGCTTAAAA
108844781 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
108844801 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
108844818 GTGGTAGTGGATT
1 TTGGTAGTGGATT
108844831 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:108849434 original size:20 final size:20
Alignment explanation
Indices: 108849409--108849458 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
108849399 TGGCTTAAAA
108849409 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
108849429 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
108849446 GTGGTAGTGGATT
1 TTGGTAGTGGATT
108849459 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:108850033 original size:3 final size:3
Alignment explanation
Indices: 108850025--108850072 Score: 71
Period size: 3 Copynumber: 16.0 Consensus size: 3
108850015 AAGGATACTG
*
108850025 ATA ATA ATA ATA ATA ATA ACA ATA A-A TATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
108850070 ATA
1 ATA
108850073 GGCAAAGTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 1 0.02
3 39 0.95
4 1 0.02
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:108853420 original size:16 final size:17
Alignment explanation
Indices: 108853379--108853420 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
108853369 AATGTGATGA
108853379 AATTGATATGAATATGTG
1 AATTGAT-TGAATATGTG
*
108853397 -ATTAATTGAA-ATGTG
1 AATTGATTGAATATGTG
108853412 AATTGATTG
1 AATTGATTG
108853421 GAAACTGGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 5 0.24
16 11 0.52
17 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.40
Consensus pattern (17 bp):
AATTGATTGAATATGTG
Found at i:108853904 original size:21 final size:21
Alignment explanation
Indices: 108853856--108853907 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
108853846 ATCTGTCGTA
*
108853856 TTTCAGGCACCTTGTGTGCCG
1 TTTCAGGCACCTCGTGTGCCG
*** *
108853877 CAGCAGGCACCTCGTGTGTCG
1 TTTCAGGCACCTCGTGTGCCG
108853898 TTTCAGGCAC
1 TTTCAGGCAC
108853908 TTTTGTGTAG
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.13, C:0.31, G:0.29, T:0.27
Consensus pattern (21 bp):
TTTCAGGCACCTCGTGTGCCG
Found at i:108858833 original size:3 final size:3
Alignment explanation
Indices: 108858825--108858862 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
108858815 TCTTTCATGG
* *
108858825 CTT CTT CTT CTT CTT CTT CTT CTT CCT CTT CCT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
108858863 CCTCAAACAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (3 bp):
CTT
Found at i:108860828 original size:44 final size:44
Alignment explanation
Indices: 108860765--108860851 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
108860755 TATCACTGTG
108860765 AATGAGCATTGTCTTAGGATACATAACATGAGATTTTCACAATT
1 AATGAGCATTGTCTTAGGATACATAACATGAGATTTTCACAATT
*
108860809 AATGAGCATTGTCTTAGGATATATAACATGAGATTTTCACAAT
1 AATGAGCATTGTCTTAGGATACATAACATGAGATTTTCACAAT
108860852 GATTTATTGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (44 bp):
AATGAGCATTGTCTTAGGATACATAACATGAGATTTTCACAATT
Found at i:108862269 original size:189 final size:187
Alignment explanation
Indices: 108861773--108862316 Score: 648
Period size: 189 Copynumber: 2.9 Consensus size: 187
108861763 ATTTCAAAGT
* * * * *
108861773 TGGAATCACTTCGTGATATGGATCTTAGTCATTGTCCAATGGTCGAATTCCCAGAAATTCCC-AG
1 TGGAATCCCTTCGTGATCTGAATCTTAGTCATTGCCCAATGATCGAATTCCCAGAAA-TCCCAAG
* * * * * * *
108861837 AAGCTTGACAGATTTAAACTTATCTGAAACTCAAATTGAAGAGGTGTGCTTGTCTCTTGCCACTC
65 AAGCTT-AGAGAATTAAACTTATCTGGAACTCAAATTGAAGAGGTGTACTTGTCTCTAGACTCTC
* * * *
108861902 CAAGTAATCTTCAGAGCTTAAATATGAGTGGCTCAAGGGTCAAAATTGTATCGATCAAGA
129 TAAATAATCTTCAGAG-TTAAATATGAGTTGCTCAAGGGTAAAAATTGTATCGATCAAGA
*
108861962 TGGAATCCCTTCGTGATCTGAATCTTAGTCATTGCCCAAT-AGTCAAATTTCCC-GAAATCCCAA
1 TGGAATCCCTTCGTGATCTGAATCTTAGTCATTGCCCAATGA-TCGAA-TTCCCAGAAATCCCAA
* * * *
108862025 GAAGCTTAGCAAAATTAAACTTATCCGGAACTCAAATTGAAGAGGTGTCCTTGTCTCTCGACTCT
64 GAAGCTTAG-AGAATTAAACTTATCTGGAACTCAAATTGAAGAGGTGTACTTGTCTCTAGACTCT
* ** *
108862090 TTATTTAATCTTCAGACGTTAGATATGAGTTGCTCAAGGGTAAAAAGTT-TATCGATCAAGA
128 CTAAATAATCTTCAGA-GTTAAATATGAGTTGCTCAAGGGTAAAAA-TTGTATCGATCAAGA
*
108862151 TGGAATCCCTTTGTGATCTGAATCTTAGTCATTGCCCAATGATCGAATTCCCAGAAATCCCAAGA
1 TGGAATCCCTTCGTGATCTGAATCTTAGTCATTGCCCAATGATCGAATTCCCAGAAATCCCAAGA
* * * * * *
108862216 AGCTTAAGAGAATTAAATTTATCTGGGACTCAAATT-AAGGAAGCGAACTTGTCTTTAGACTCTC
66 AGCTT-AGAGAATTAAACTTATCTGGAACTCAAATTGAA-GAGGTGTACTTGTCTCTAGACTCTC
* *
108862280 TAAATAATCTTCAGAAGTTAAAGATGAGCTGCTCAAG
129 TAAATAATCTTCAG-AGTTAAATATGAGTTGCTCAAG
108862317 TATTCAAAAG
Statistics
Matches: 304, Mismatches: 40, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
188 12 0.04
189 280 0.92
190 12 0.04
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (187 bp):
TGGAATCCCTTCGTGATCTGAATCTTAGTCATTGCCCAATGATCGAATTCCCAGAAATCCCAAGA
AGCTTAGAGAATTAAACTTATCTGGAACTCAAATTGAAGAGGTGTACTTGTCTCTAGACTCTCTA
AATAATCTTCAGAGTTAAATATGAGTTGCTCAAGGGTAAAAATTGTATCGATCAAGA
Done.