Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 342 of 343
Found at i:109652769 original size:40 final size:40
Alignment explanation
Indices: 109652725--109652805 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
109652715 CTGTACAGTA
109652725 TATCAAAAAACAAATTGATCCTTTTTGTTAATTATCATTT
1 TATCAAAAAACAAATTGATCCTTTTTGTTAATTATCATTT
109652765 TATCAAAAAACAAATTGATCCTTTTTGTTAATTATCATTT
1 TATCAAAAAACAAATTGATCCTTTTTGTTAATTATCATTT
109652805 T
1 T
109652806 TTTGTACTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.46
Consensus pattern (40 bp):
TATCAAAAAACAAATTGATCCTTTTTGTTAATTATCATTT
Found at i:109658172 original size:13 final size:13
Alignment explanation
Indices: 109658156--109658185 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
109658146 AGTGCTGCAA
109658156 AAAAATGCTTATG
1 AAAAATGCTTATG
*
109658169 AAAAATGCTTTTG
1 AAAAATGCTTATG
109658182 AAAA
1 AAAA
109658186 GCTTGGTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (13 bp):
AAAAATGCTTATG
Found at i:109659783 original size:16 final size:18
Alignment explanation
Indices: 109659746--109659780 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
109659736 AATACTAAGA
109659746 ATTT-TATTAAATTATAT
1 ATTTATATTAAATTATAT
109659763 ATTTATATTAAATTATAT
1 ATTTATATTAAATTATAT
109659781 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTATATTAAATTATAT
Found at i:109659792 original size:16 final size:17
Alignment explanation
Indices: 109659753--109659798 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
109659743 AGAATTTTAT
* *
109659753 TAAATTATATATTTATAT
1 TAAATTATAT-TTAATAA
109659771 TAAATTATATTTAATAA
1 TAAATTATATTTAATAA
109659788 T-AATTAT-TTTA
1 TAAATTATATTTA
109659799 GATTATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 4 0.15
16 6 0.23
17 6 0.23
18 10 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TAAATTATATTTAATAA
Found at i:109659794 original size:26 final size:25
Alignment explanation
Indices: 109659765--109659821 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
109659755 AATTATATAT
109659765 TTATATTAAATTATATTTAATAATAA
1 TTATATTAAATTATATTTAATAAT-A
* * * *
109659791 TTATTTTAGATTATATTTTATAGTA
1 TTATATTAAATTATATTTAATAATA
109659816 TTATAT
1 TTATAT
109659822 ATTATGATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (25 bp):
TTATATTAAATTATATTTAATAATA
Found at i:109659883 original size:22 final size:20
Alignment explanation
Indices: 109659866--109660027 Score: 87
Period size: 22 Copynumber: 7.8 Consensus size: 20
109659856 TAATATTAAG
109659866 AATTTTATTAAATTATATT-
1 AATTTTATTAAATTATATTA
* *
109659885 -TTTTTATTAAATTATATTT
1 AATTTTATTAAATTATATTA
** *
109659904 AATTATTATTATTTTAAATTA
1 AATT-TTATTAAATTATATTA
* *
109659925 TATTTTA-TACTATTATATATTA
1 AATTTTATTA--AAT-TATATTA
* *
109659947 TAATTTTAGTAAATTCATATAA
1 -AATTTTATTAAATT-ATATTA
*
109659969 GAATTTTATTAAATTATAATA
1 -AATTTTATTAAATTATATTA
* * *
109659990 TATTTAATTATAATTATGTTTA
1 AATTTTATTA-AATTAT-ATTA
* *
109660012 AATATGATTAAATTAT
1 AATTTTATTAAATTAT
109660028 TTATTATTGA
Statistics
Matches: 109, Mismatches: 23, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
18 17 0.16
19 2 0.02
20 13 0.12
21 34 0.31
22 35 0.32
23 6 0.06
24 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.55
Consensus pattern (20 bp):
AATTTTATTAAATTATATTA
Found at i:109659889 original size:18 final size:18
Alignment explanation
Indices: 109659868--109659903 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
109659858 ATATTAAGAA
109659868 TTTTATTAAATTATATTT
1 TTTTATTAAATTATATTT
109659886 TTTTATTAAATTATATTT
1 TTTTATTAAATTATATTT
109659904 AATTATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATTAAATTATATTT
Found at i:109659909 original size:18 final size:18
Alignment explanation
Indices: 109659870--109659911 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
109659860 ATTAAGAATT
**
109659870 TTATTAAATTATATTTTT
1 TTATTAAATTATATTTAA
109659888 TTATTAAATTATATTTAA
1 TTATTAAATTATATTTAA
109659906 TTATTA
1 TTATTA
109659912 TTATTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATTAAATTATATTTAA
Found at i:109659929 original size:121 final size:120
Alignment explanation
Indices: 109659669--109659976 Score: 510
Period size: 121 Copynumber: 2.6 Consensus size: 120
109659659 CCACAAAATC
*
109659669 AATTATTTTAGATTATATTTTATAATATTATATATTATGATTTTAGTAAATTCGTATAAGAATAT
1 AATTATTTTAGATTATATTTTATAATATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
109659734 TTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
66 TTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
*
109659789 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
1 AATTATTTTAGATTATATTTTATAATATTATATATTATGATTTTAGTAAATTCATATAAGAATA-
* * * *
109659854 TTTAATATTAAGAATTTTATTAAATTATATTTTTTTATTAAATTATATTTAATTAT
65 TTTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
* * * *
109659910 TATTATTTTAAATTATATTTTATACTATTATATATTATAATTTTAGTAAATTCATATAAGAAT-T
1 AATTATTTTAGATTATATTTTATAATATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
109659974 TTA
66 TTA
109659977 TTAAATTATA
Statistics
Matches: 177, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
119 4 0.02
120 62 0.35
121 111 0.63
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.53
Consensus pattern (120 bp):
AATTATTTTAGATTATATTTTATAATATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
TTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
Found at i:109660243 original size:45 final size:44
Alignment explanation
Indices: 109660157--109660247 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
109660147 ACCTCTATTC
* *
109660157 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTAATCCATTA
*** *
109660201 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTAATCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTAATCCATTA
109660246 CA
1 CA
109660248 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.29, G:0.05, T:0.31
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTAATCCATTA
Found at i:109660247 original size:16 final size:16
Alignment explanation
Indices: 109660226--109660295 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
109660216 TTGATTTGCT
109660226 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
109660242 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
109660258 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
109660274 ATTACGCCTCTAATCC
1 ATTACACCTCTAATCC
*
109660290 AATACA
1 ATTACA
109660296 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.31, C:0.36, G:0.01, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:109662569 original size:31 final size:31
Alignment explanation
Indices: 109662532--109662591 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
109662522 CAAAATAAGT
*
109662532 AAATTAGTCCTTGTGCATTAAATCAAAGAGA
1 AAATTAGTCATTGTGCATTAAATCAAAGAGA
109662563 AAATTAGTCATTGTGCATTAAATCAAAGA
1 AAATTAGTCATTGTGCATTAAATCAAAGA
109662592 CAAAGACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (31 bp):
AAATTAGTCATTGTGCATTAAATCAAAGAGA
Found at i:109664229 original size:44 final size:44
Alignment explanation
Indices: 109664178--109664268 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
109664168 TATTGTTTGG
109664178 ACTGGCTAATGAAATTATAAAGGCATAATTAAGTAGAGGGGCTA
1 ACTGGCTAATGAAATTATAAAGGCATAATTAAGTAGAGGGGCTA
109664222 ACTGGCTAATGAAATTATAAAGGCATAATTAAGTAGAGGGGCTA
1 ACTGGCTAATGAAATTATAAAGGCATAATTAAGTAGAGGGGCTA
109664266 ACT
1 ACT
109664269 CAATTTTTCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.25
Consensus pattern (44 bp):
ACTGGCTAATGAAATTATAAAGGCATAATTAAGTAGAGGGGCTA
Found at i:109666530 original size:106 final size:105
Alignment explanation
Indices: 109666348--109666559 Score: 397
Period size: 106 Copynumber: 2.0 Consensus size: 105
109666338 TAAATGTTTG
*
109666348 TGGATTAAAGTTACTATTATACTAATTTAAAAGCTACCATTGTTTGTCTATTGGTGACTAAAAAA
1 TGGATTAAAGTTACTATTATACTAATTTAAAAGCTACCATTGTTTGTCCATTGGTGACTAAAAAA
*
109666413 GACAAAATTGAATAAGTGAGTGGCCATTTTATAACTTTTC
66 GACAAAATTGAATAAGTGAGTGACCATTTTATAACTTTTC
109666453 TGGATTAAAGTTACTATTATACTAATTTAAAAGCTACCATTTGTTTGTCCATTGGTGACTAAAAA
1 TGGATTAAAGTTACTATTATACTAATTTAAAAGCTACCA-TTGTTTGTCCATTGGTGACTAAAAA
109666518 AGACAAAATTGAATAAGTGAGTGACCATTTTATAACTTTTC
65 AGACAAAATTGAATAAGTGAGTGACCATTTTATAACTTTTC
109666559 T
1 T
109666560 TAATTGGGTA
Statistics
Matches: 104, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
105 39 0.38
106 65 0.62
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (105 bp):
TGGATTAAAGTTACTATTATACTAATTTAAAAGCTACCATTGTTTGTCCATTGGTGACTAAAAAA
GACAAAATTGAATAAGTGAGTGACCATTTTATAACTTTTC
Found at i:109670329 original size:8 final size:8
Alignment explanation
Indices: 109670318--109670345 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
109670308 TATAAAAATA
109670318 ATTTATAT
1 ATTTATAT
109670326 ATTTATAT
1 ATTTATAT
109670334 ATTTATAT
1 ATTTATAT
109670342 ATTT
1 ATTT
109670346 TCTAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
ATTTATAT
Found at i:109672916 original size:15 final size:17
Alignment explanation
Indices: 109672888--109672920 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
109672878 TTGTATATAT
109672888 TATATTTATATTATGTA
1 TATATTTATATTATGTA
109672905 TATATTT-T-TTATGTA
1 TATATTTATATTATGTA
109672920 T
1 T
109672921 GTTTCCTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (17 bp):
TATATTTATATTATGTA
Found at i:109673541 original size:18 final size:18
Alignment explanation
Indices: 109673520--109673564 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
109673510 AAAATTCAGG
109673520 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
109673538 TTTC-AAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
109673555 TTT-AAAAATT
1 TTTCAAAAATT
109673565 CTTATTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:109683755 original size:86 final size:86
Alignment explanation
Indices: 109683524--109683843 Score: 241
Period size: 86 Copynumber: 3.8 Consensus size: 86
109683514 TGTTCATCAA
* * * *** * *
109683524 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCTCATAATGAGGTATT-TACGA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGCTGAAGTATTGT-CAA
** *
109683588 TTTCCAAT-TTTCAATTTATGTTTTTC
63 TTT-CTGTCTTTTAATTTATG--TTTC
* ** ** *
109683614 -AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTACGCTGAGGTATTGTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAAGTATTGTCAATTT
* *
109683678 TTGTGTTTTAATTTATGTTTC
66 CTGTCTTTTAATTTATGTTTC
* * *
109683699 AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGTTGAAGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAAGTATTGTCAATTT
* *
109683764 CTGTCTTTCAA---A-----A
66 CTGTCTTTTAATTTATGTTTC
* *
109683777 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTAATT-TCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGCTGAAGT-ATTGTCAA
109683841 TTT
63 TTT
109683844 ATGTTTGTCA
Statistics
Matches: 194, Mismatches: 30, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
78 40 0.21
80 17 0.09
81 3 0.02
83 1 0.01
85 4 0.02
86 64 0.33
87 26 0.13
88 1 0.01
89 38 0.20
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (86 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAAGTATTGTCAATTT
CTGTCTTTTAATTTATGTTTC
Found at i:109684008 original size:58 final size:59
Alignment explanation
Indices: 109683933--109684049 Score: 173
Period size: 58 Copynumber: 2.0 Consensus size: 59
109683923 CAAAAATCAA
* * **
109683933 CTCATATTGCGATAGGTGAGTTAAGCCTCAAGACACGTTGAGGT-ATTTTCAATTTCTG
1 CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACACTGAGGTAATTTTCAATTTCTG
* *
109683991 CTCACATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTTCAATTTCTG
1 CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACACTGAGGTAATTTTCAATTTCTG
109684050 TTGTTAAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
58 38 0.73
59 14 0.27
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (59 bp):
CTCACATTGCGAGAGGTGAGTTAAGCCTCAAGACACACTGAGGTAATTTTCAATTTCTG
Found at i:109684168 original size:72 final size:72
Alignment explanation
Indices: 109683991--109684513 Score: 455
Period size: 72 Copynumber: 6.9 Consensus size: 72
109683981 TCAATTTCTG
* * *
109683991 CTCACATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTTCAATTTCTGTTGTTA
1 CTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAA-TTTCAATTTCTGTT-TT-
* *
109684056 AAAAAAATTAA
63 -CAAAAATCAA
*
109684067 CTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAA
*
109684132 AATTCAA
66 AAATCAA
* * * * *
109684139 CTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTGTTTTTCA
1 CTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTTTC-
109684204 AAAAAAAAATCAA
64 ----AAAAATCAA
* *
109684217 CTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAA
109684282 AAATCAA
66 AAATCAA
* *
109684289 CTCATATTGCGAGATGTGAGTTGAGCCTCGAGG-CACGCTGAGGT-ATTGTCAATTTTTGTGTTT
1 CTCATATTGCGAGAAGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATT-TCAATTTCTGT-TTT
**
109684352 CAATCTATTTTTCAAAAA
63 CAA---A--AATC---AA
* * * * ** *
109684370 ATCA-ACT-C-ATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 CTCATATTGCGAGA--A-GTGAGTTGA---G-C-CTCAGGACACGCTGAGGTAATTTCAATTTCT
109684432 GTTTGTCAAAAATCAA
58 GTTT-TCAAAAATCAA
* * * *
109684448 CTCATATTGCGAGAGGTAAGTTGAGCCTCAAGG-CACGTTGAGGTAATTTCGATTTCTGCTTTTC
1 CTCATATTGCGAGAAGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATTTCAATTTCTG-TTTTC
109684512 AA
64 AA
109684514 TTTATATTTT
Statistics
Matches: 368, Mismatches: 46, Indels: 69
0.76 0.10 0.14
Matches are distributed among these distances:
71 3 0.01
72 119 0.32
73 43 0.12
74 8 0.02
75 15 0.04
76 43 0.12
77 5 0.01
78 73 0.20
79 3 0.01
80 3 0.01
81 15 0.04
83 1 0.00
84 1 0.00
85 5 0.01
86 28 0.08
87 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (72 bp):
CTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAA
AAATCAA
Found at i:109684466 original size:430 final size:423
Alignment explanation
Indices: 109683687--109685232 Score: 1222
Period size: 430 Copynumber: 3.5 Consensus size: 423
109683677 TTTGTGTTTT
** *
109683687 AATTTATGTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGTTGAAG
1 AATTTATGTTTCAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAAG
109683752 TATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 TATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
109683817 GGTCACACGCTGAGGTAATTTCAATTTATGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAG
131 GGTCACACGCTGAGGTAATTTCAATTTATGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAG
* * *
109683882 TTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGATA
196 TTGAGCCTCAGGGCACGCTGAGGTATTTTCAATCTATTTTTCAAAAATCAACTCATATTACGAGA
** * * **
109683947 GGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTCACATTGCGAGAGGTGAGT
261 AATGAGTTAAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGCT---ATTGCGAGA---GAAA
* *
109684012 TGAGCCTCAGGACACACTGAGGTAATTTTCAATTTCTGTTGTTAAAAAAAATTAACTCATATTGC
320 TCAGACTCAGGACACAC-GAGGTAATTTTCAATTTCTGTTGTTAAAAAAAATTAACTCATATTGC
109684077 GAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
384 GAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* * * * *
109684117 AATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAG
1 AATTTATG-TTTCAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAA
* *
109684181 GTATTTTCAATTTTTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65 GTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * * *
109684246 -GG-GACACGCTGAGGTAATTTCAATTTCTGTTT-TCAAAAATCAACTCATATTGCGAGATGTGA
130 AGGTCACACGCTGAGGTAATTTCAATTTATGTTTGTCAAAAATCAACTCATATTACGAGAGGTGA
109684308 GTTGAGCCTC-GAGGCACGCTGAGGTATTGTCAATTTTTGTGTTTCAATCTATTTTTCAAAAAAT
195 GTTGAGCCTCAG-GGCACGCTGA-G----GT--A------T-TTTCAATCTATTTTTC-AAAAAT
* *
109684372 CAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTG
244 CAACTCATATTACGAGAAATGAGTTAAGCCTCAAGACACGCTGAGGTAATTTCAATTTC----TG
* * * **
109684437 TCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGG-CACGTTGAGGTAATTTCGAT
305 -------------C-TATTGCGAGA-G-AA-ATCAGACTC-AGGACAC-ACGAGGTAA--T---T
* * * * **
109684501 TTCTGCTTTTCAATTTATATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
346 TT--------CAATTTCTGTTGTT--AAAAAAAATTAACTCATATTGCGAGAAATGAGTTGAGCC
*
109684566 TCCGGACACGCTGAGGTAATTTTC
401 TCAGGACACGCTGAGGTAA-TTTC
* * * *
109684590 AATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
1 AATTTATG-T-TTCAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGA
* * * **
109684655 GGTAATTTCAATTTCTGT-TTTC-----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
64 AGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * * * **
109684714 C-GAG--ACATGCTGAGGTATTTTCAATTTTTGTTTTTCAAAAAAAAATCAACTCATATTGTGAG
129 CAG-GTCACACGCTGAGGTAATTTCAATTTATGTTTGTC----AAAAATCAACTCATATTACGAG
* *
109684776 AGGTGAGTTGAGCCTC-GGGACACGCTGAGGTAATTTCAATTTATGTTTTCAAAAATCAACTCAT
189 AGGTGAGTTGAGCCTCAGGG-CACGCTGAGGTATTTTCAATCTAT-TTTTCAAAAATCAACTCAT
* ** * **
109684840 ATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTC
252 ATTACGAGAAATGAGTTAAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG------------
** * * * * *
109684905 AACTCATATTGCGAGATGTGAGTTGAGCCTCGGGACACGCTGAGCTAA-TTTCAATTTCTGTT-T
305 ----C-TATTGCGAGA---GAAATCAGACTCAGGACACAC-GAGGTAATTTTCAATTTCTGTTGT
* * **
109684968 T--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GAGACACGCTGAGGTAATTTC
361 TAAAAAAAATTAACTCATATTGCGAGAAATGAGTTGAGCCTCAG-GACACGCTGAGGTAATTTC
* * * ** *
109685029 AATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAG
1 AATTTATG-TTTCAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAA
*
109685093 GTATTTTCAATTTCTGT-TTTC---AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC
65 GTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * * * * *
109685154 -GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT-TCAAAAAAATCAACTCATATTGCAAAAG
130 AGG-TCACACGCTGAGGTAATTTCAATTTATGT-TTGTC--AAAAATCAACTCATATTACGAGAG
*
109685217 GTGAGTTGAGCTTCAG
191 GTGAGTTGAGCCTCAG
109685233 ATCACACACT
Statistics
Matches: 957, Mismatches: 79, Indels: 150
0.81 0.07 0.13
Matches are distributed among these distances:
426 1 0.00
427 48 0.05
428 29 0.03
429 2 0.00
430 114 0.12
431 4 0.00
432 2 0.00
434 1 0.00
437 67 0.07
438 3 0.00
439 86 0.09
440 55 0.06
441 43 0.04
442 59 0.06
444 2 0.00
445 9 0.01
446 2 0.00
453 3 0.00
455 1 0.00
456 3 0.00
457 28 0.03
458 5 0.01
459 44 0.05
460 73 0.08
461 6 0.01
462 3 0.00
467 1 0.00
469 64 0.07
470 14 0.01
472 54 0.06
473 17 0.02
474 51 0.05
475 63 0.07
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (423 bp):
AATTTATGTTTCAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAAG
TATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
GGTCACACGCTGAGGTAATTTCAATTTATGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAG
TTGAGCCTCAGGGCACGCTGAGGTATTTTCAATCTATTTTTCAAAAATCAACTCATATTACGAGA
AATGAGTTAAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGCTATTGCGAGAGAAATCAGAC
TCAGGACACACGAGGTAATTTTCAATTTCTGTTGTTAAAAAAAATTAACTCATATTGCGAGAAAT
GAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
Found at i:109684490 original size:73 final size:73
Alignment explanation
Indices: 109684360--109684513 Score: 213
Period size: 73 Copynumber: 2.1 Consensus size: 73
109684350 TTCAATCTAT
*
109684360 TTTTCAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTTC-AAAAATCAACTCATATTACGAGAAATAAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
109684425 AATTTCTG-
65 AATTTCTGC
* ** *
109684433 TTTGTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGG-CACGTTGAGGTAATTT
1 TTT-TCAAAAATCAACTCATATTACGAGAAATAAGTTGAGCCTC-AGGACACGCTGAGGTAATTT
*
109684497 CGATTTCTGC
64 CAATTTCTGC
109684507 TTTTCAA
1 TTTTCAA
109684514 TTTATATTTT
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
73 64 0.89
74 8 0.11
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (73 bp):
TTTTCAAAAATCAACTCATATTACGAGAAATAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
ATTTCTGC
Found at i:109684713 original size:72 final size:71
Alignment explanation
Indices: 109684530--109685227 Score: 946
Period size: 72 Copynumber: 9.5 Consensus size: 71
109684520 TTTTTCAAAA
109684530 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CGGACACGCTGAGGTAA-TTTCAATTT
*
109684595 CTGTTGTTAA
64 CTGTT-TT-C
**
109684605 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAATTTC
109684670 TGTTTTC
65 TGTTTTC
* ** * * *
109684677 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GACACGCTGAGGTAATTTCAATTTC
109684742 TGTTTTTC
65 TG-TTTTC
*
109684750 AAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAA
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAA
*
109684815 TTTATGTTTTC
61 TTTCTGTTTTC
109684826 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAATTTC
109684891 TGTTTTC
65 TGTTTTC
* * *
109684898 AAAATTCAACTCATATTGCGAGATGTGAGTTGAGCCTCGGGACACGCTGAGCTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAATTTC
109684963 TGTTTTC
65 TGTTTTC
109684970 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GACACGCTGAGGTAATTTCAATTTC
109685035 TGTTTTC
65 TGTTTTC
* ** * ** *
109685042 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAATTTC
109685107 TGTTTTC
65 TGTTTTC
* * *
109685114 AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTAATTTCAA
109685179 TTTCTGTCTTTC
61 TTTCTGT-TTTC
* *
109685191 AAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGC
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
109685228 TTCAGATCAC
Statistics
Matches: 567, Mismatches: 40, Indels: 30
0.89 0.06 0.05
Matches are distributed among these distances:
71 2 0.00
72 331 0.58
73 8 0.01
74 49 0.09
75 51 0.09
76 29 0.05
77 96 0.17
78 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (71 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTTCT
GTTTTC
Found at i:109687137 original size:15 final size:17
Alignment explanation
Indices: 109687109--109687140 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
109687099 TTGTATATAT
109687109 TATATTTATATTATGTA
1 TATATTTATATTATGTA
109687126 TATATTT-T-TTATGTA
1 TATATTTATATTATGTA
109687141 CGTTTCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TATATTTATATTATGTA
Found at i:109687764 original size:17 final size:17
Alignment explanation
Indices: 109687744--109687789 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
109687734 AAAAATTCAG
109687744 GTTTCAAAAATTTTCGT
1 GTTTCAAAAATTTTCGT
109687761 GTTTGC-AAAATTTTCGT
1 GTTT-CAAAAATTTTCGT
*
109687778 GTTTTAAAAATT
1 GTTTCAAAAATT
109687790 CTTATTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 25 0.96
18 1 0.04
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.48
Consensus pattern (17 bp):
GTTTCAAAAATTTTCGT
Found at i:109688292 original size:18 final size:18
Alignment explanation
Indices: 109688269--109688323 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
109688259 GATCAATACG
109688269 ATAGCATTTAATATACTT
1 ATAGCATTTAATATACTT
* *
109688287 ATAGCATATCA-ATAC-T
1 ATAGCATTTAATATACTT
* * *
109688303 ATAACAATTATTATACTT
1 ATAGCATTTAATATACTT
109688321 ATA
1 ATA
109688324 CTAATTCAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
16 7 0.25
17 8 0.29
18 13 0.46
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.40
Consensus pattern (18 bp):
ATAGCATTTAATATACTT
Found at i:109688333 original size:34 final size:34
Alignment explanation
Indices: 109688247--109688333 Score: 81
Period size: 34 Copynumber: 2.6 Consensus size: 34
109688237 GTAATGTGGC
* * *
109688247 ATACTTATAATAGA-TCAATACGATAGCATTTAAT
1 ATACTTATACTA-ATTCAATACGATAACAATTAAT
* *
109688281 ATACTTATAGC--ATATCAATACTATAACAATTATT
1 ATACTTATA-CTAAT-TCAATACGATAACAATTAAT
109688315 ATACTTATACTAATTCAAT
1 ATACTTATACTAATTCAAT
109688334 TCAGTAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
32 1 0.02
33 1 0.02
34 39 0.91
35 2 0.05
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.38
Consensus pattern (34 bp):
ATACTTATACTAATTCAATACGATAACAATTAAT
Found at i:109694315 original size:23 final size:23
Alignment explanation
Indices: 109694285--109694336 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
109694275 CCTGAATATA
109694285 AAAAAAGTTTAGAGACTAAAATC
1 AAAAAAGTTTAGAGACTAAAATC
109694308 AAAAAAGTTTAGAGACTAAAATC
1 AAAAAAGTTTAGAGACTAAAATC
109694331 AAAAAA
1 AAAAAA
109694337 ATTATTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.62, C:0.08, G:0.12, T:0.19
Consensus pattern (23 bp):
AAAAAAGTTTAGAGACTAAAATC
Found at i:109697963 original size:28 final size:30
Alignment explanation
Indices: 109697891--109697965 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 30
109697881 TCAATTTTGT
* *
109697891 ATTAATTTATAATTTTCTCATTTTTTAAGGA
1 ATTAAATTA-AATTTTCTCATTCTTTAAGGA
109697922 ATTAAATATAAATTTT-TCA-TCTTTAAGG-
1 ATTAAAT-TAAATTTTCTCATTCTTTAAGGA
109697950 ATTAAATTACAATTTT
1 ATTAAATTA-AATTTT
109697966 ATCGCACATT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
27 2 0.05
28 13 0.32
29 8 0.20
30 3 0.08
31 12 0.30
32 2 0.05
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (30 bp):
ATTAAATTAAATTTTCTCATTCTTTAAGGA
Found at i:109698996 original size:92 final size:92
Alignment explanation
Indices: 109698850--109699033 Score: 278
Period size: 92 Copynumber: 2.0 Consensus size: 92
109698840 AATGCAGAAA
* * * *
109698850 GACATGGGTCCGAGTTCGATGAAGCACATTATCCTCCTGCTTATAGATTAGGGAGGGGATATGGA
1 GACATAGGTCCGAGTGCGATGAAGCACATTATCCTCCTACTTATAAATTAGGGAGGGGATATGGA
109698915 TAATTCTAGGTATTGTGTCAAAAAGAG
66 TAATTCTAGGTATTGTGTCAAAAAGAG
* * * *
109698942 GACATAGGTTCGAGTGCGATGAAGCGCATTATCCTCCTACTTATAAATTGGGGAGGGGATATGGG
1 GACATAGGTCCGAGTGCGATGAAGCACATTATCCTCCTACTTATAAATTAGGGAGGGGATATGGA
* *
109699007 TAGTTCTAGTTATTGTGTCAAAAAGAG
66 TAATTCTAGGTATTGTGTCAAAAAGAG
109699034 CAGTTATGAT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 82 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (92 bp):
GACATAGGTCCGAGTGCGATGAAGCACATTATCCTCCTACTTATAAATTAGGGAGGGGATATGGA
TAATTCTAGGTATTGTGTCAAAAAGAG
Found at i:109703216 original size:35 final size:35
Alignment explanation
Indices: 109703166--109703239 Score: 112
Period size: 35 Copynumber: 2.1 Consensus size: 35
109703156 TTTTATAGTA
* *
109703166 TTGTTAATGTTTGTTTTAAGATTTATGTTCAAGAT
1 TTGTTAATGTCTGTTTTAAGATTTATGTTCAAGAC
* *
109703201 TTGTTGATGTCTGTTTTAAGATTTATGTTCGAGAC
1 TTGTTAATGTCTGTTTTAAGATTTATGTTCAAGAC
109703236 TTGT
1 TTGT
109703240 GGTTATCTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.22, C:0.05, G:0.20, T:0.53
Consensus pattern (35 bp):
TTGTTAATGTCTGTTTTAAGATTTATGTTCAAGAC
Found at i:109712290 original size:26 final size:26
Alignment explanation
Indices: 109712260--109712341 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
109712250 TGAAATTCCC
109712260 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
109712286 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
109712312 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
109712338 ATCA
1 ATCA
109712342 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:109716019 original size:15 final size:16
Alignment explanation
Indices: 109715999--109716039 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
109715989 TTATATTTTA
109715999 AATAATTTGA-TTAAT
1 AATAATTTGATTTAAT
109716014 AATAATTTGATTTAAT
1 AATAATTTGATTTAAT
* *
109716030 TATTATTTGA
1 AATAATTTGA
109716040 ATTGATTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (16 bp):
AATAATTTGATTTAAT
Found at i:109724184 original size:40 final size:40
Alignment explanation
Indices: 109724129--109724209 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
109724119 TCGAGGAACT
109724129 TCTTGAACTTTGTGAACCCTGTTGGGTTCTTCTTAGAGTA
1 TCTTGAACTTTGTGAACCCTGTTGGGTTCTTCTTAGAGTA
109724169 TCTTGAACTTTGTGAACCCTGTTGGGTTCTTCTTAGAGTA
1 TCTTGAACTTTGTGAACCCTGTTGGGTTCTTCTTAGAGTA
109724209 T
1 T
109724210 GAGAGACAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.17, C:0.17, G:0.22, T:0.43
Consensus pattern (40 bp):
TCTTGAACTTTGTGAACCCTGTTGGGTTCTTCTTAGAGTA
Found at i:109724996 original size:11 final size:11
Alignment explanation
Indices: 109724980--109725016 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
109724970 TTACAAAATT
109724980 AAAAATTCTAA
1 AAAAATTCTAA
*
109724991 AAAAATTC-AT
1 AAAAATTCTAA
109725001 AAAAATTCTAA
1 AAAAATTCTAA
109725012 AAAAA
1 AAAAA
109725017 AAATTAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAAATTCTAA
Found at i:109725024 original size:21 final size:21
Alignment explanation
Indices: 109724974--109725024 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
109724964 CAACTATTAC
109724974 AAAATTAAAAATTCTAAAAAA
1 AAAATTAAAAATTCTAAAAAA
**
109724995 ATTCA-TAAAAATTCTAAAAAA
1 A-AAATTAAAAATTCTAAAAAA
109725016 AAAATTAAA
1 AAAATTAAA
109725025 GAAGAGAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 1 0.04
21 22 0.92
22 1 0.04
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATTAAAAATTCTAAAAAA
Found at i:109729863 original size:31 final size:31
Alignment explanation
Indices: 109729774--109729864 Score: 89
Period size: 30 Copynumber: 3.0 Consensus size: 31
109729764 GAGTGTAAAC
*
109729774 TTGTAAACTTACTAATAGTTGAGTGACC-AA
1 TTGTAAACTTACTAATAGTTGAGCGACCAAA
** * *
109729804 TT-TATAACTTTTTAA-AATTCAGCGACCAAA
1 TTGTA-AACTTACTAATAGTTGAGCGACCAAA
* *
109729834 TTGTAAACTTGCTAATAGTTGAGCAACCAAA
1 TTGTAAACTTACTAATAGTTGAGCGACCAAA
109729865 ATTTAAATTT
Statistics
Matches: 47, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
29 11 0.23
30 22 0.47
31 14 0.30
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (31 bp):
TTGTAAACTTACTAATAGTTGAGCGACCAAA
Found at i:109731445 original size:18 final size:17
Alignment explanation
Indices: 109731402--109731447 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
109731392 CCGTTATGTC
109731402 CGCGACCGCGA-C-AAA
1 CGCGACCGCGACCGAAA
*
109731417 CGC-AACGCGACCGAAAA
1 CGCGACCGCGACCG-AAA
109731434 CGCGACCGCGACCG
1 CGCGACCGCGACCG
109731448 TAATTTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 6 0.24
15 4 0.16
17 6 0.24
18 9 0.36
ACGTcount: A:0.30, C:0.41, G:0.28, T:0.00
Consensus pattern (17 bp):
CGCGACCGCGACCGAAA
Found at i:109733492 original size:45 final size:48
Alignment explanation
Indices: 109733413--109733533 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 48
109733403 CTCAACCAGG
* * * *
109733413 ACACGAAGCACGACCTAATGTTTCTACTCCGTCCCC-T-T-CATCGAAA
1 ACACAAAGTACGACCCAATGCTTCTACTCCGTCCCCTTCTCCATC-AAA
* *
109733459 A-ACAAAGTACGACCCAATGCTTCTATTCTGTCCCCTTCTCCATCAAA
1 ACACAAAGTACGACCCAATGCTTCTACTCCGTCCCCTTCTCCATCAAA
* *
109733506 ACACAAAGTACAATCCAATGCTTCTACT
1 ACACAAAGTACGACCCAATGCTTCTACT
109733534 GCTTCTACTT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
45 28 0.45
46 2 0.03
47 5 0.08
48 27 0.44
ACGTcount: A:0.31, C:0.33, G:0.10, T:0.26
Consensus pattern (48 bp):
ACACAAAGTACGACCCAATGCTTCTACTCCGTCCCCTTCTCCATCAAA
Found at i:109738206 original size:23 final size:23
Alignment explanation
Indices: 109738146--109738206 Score: 54
Period size: 22 Copynumber: 2.7 Consensus size: 23
109738136 ACTAAATTGA
* * *
109738146 AATAGAGTTAACATTTATTGTTT
1 AATAGAGTTAATATTTACTGTTC
* *
109738169 AAAAAAG-T-ATCATTTACTGTTC
1 AATAGAGTTAAT-ATTTACTGTTC
109738191 AATAGAGTTAATATTT
1 AATAGAGTTAATATTT
109738207 TTAAAATGGT
Statistics
Matches: 28, Mismatches: 7, Indels: 6
0.68 0.17 0.15
Matches are distributed among these distances:
21 1 0.04
22 15 0.54
23 10 0.36
24 2 0.07
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (23 bp):
AATAGAGTTAATATTTACTGTTC
Found at i:109738519 original size:34 final size:34
Alignment explanation
Indices: 109738481--109738545 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
109738471 TAAAATATGA
*
109738481 ATATAAAT-TTAATTATAAACTATTATTATTCTAT
1 ATATAAATGTTAATAATAAAC-ATTATTATTCTAT
* *
109738515 ATATAAATGTTTATAATAATCATTATTATTC
1 ATATAAATGTTAATAATAAACATTATTATTC
109738546 AGCATAAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 18 0.67
35 9 0.33
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (34 bp):
ATATAAATGTTAATAATAAACATTATTATTCTAT
Found at i:109744754 original size:16 final size:15
Alignment explanation
Indices: 109744733--109744794 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 15
109744723 GATGTGAATA
109744733 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
109744749 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
109744764 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
109744780 AATAATAATAATTAA
1 -ATAA-AAT-ATTAA
109744795 TATTGAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
15 8 0.20
16 23 0.57
17 5 0.12
18 4 0.10
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:109744763 original size:8 final size:8
Alignment explanation
Indices: 109744729--109744794 Score: 62
Period size: 8 Copynumber: 8.0 Consensus size: 8
109744719 CAATGATGTG
*
109744729 AATAATAA
1 AATATTAA
109744737 AATATATAA
1 AATAT-TAA
109744746 AATA-TAA
1 AATATTAA
109744753 AATATTAA
1 AATATTAA
*
109744761 AATATCAA
1 AATATTAA
*
109744769 AATATTAG
1 AATATTAA
*
109744777 AATAATAA
1 AATATTAA
109744785 TAATAATTAA
1 -AAT-ATTAA
109744795 TATTGAAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
7 7 0.15
8 26 0.55
9 10 0.21
10 4 0.09
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (8 bp):
AATATTAA
Found at i:109744780 original size:24 final size:24
Alignment explanation
Indices: 109744728--109744789 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
109744718 ACAATGATGT
*
109744728 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
109744752 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
109744776 GAATAATAATAATA
1 GAATAATAA-AATA
109744790 ATTAATATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 6 0.19
24 21 0.68
25 4 0.13
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:109744975 original size:25 final size:25
Alignment explanation
Indices: 109744941--109745005 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
109744931 CGTGATAATA
*
109744941 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAGTG
109744966 TTAAAAATATATACATAATATA--G
1 TTAAAAATATATACATAATATAGTG
*
109744989 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
109745006 GATAACATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 14 0.37
23 3 0.08
25 21 0.55
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAAAAATATATACATAATATAGTG
Found at i:109745155 original size:23 final size:25
Alignment explanation
Indices: 109745112--109745157 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
109745102 TATACCTAAT
109745112 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
109745137 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
109745158 ACAAAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:109745680 original size:30 final size:30
Alignment explanation
Indices: 109745644--109745818 Score: 287
Period size: 30 Copynumber: 5.8 Consensus size: 30
109745634 TAGGTACAAG
* *
109745644 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
109745674 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
109745704 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
109745734 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* *
109745764 TGGTGGTGGAAAATGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
109745794 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
109745819 TGAGAAAAGT
Statistics
Matches: 134, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 134 1.00
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:109745737 original size:60 final size:60
Alignment explanation
Indices: 109745644--109745818 Score: 323
Period size: 60 Copynumber: 2.9 Consensus size: 60
109745634 TAGGTACAAG
*
109745644 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
109745704 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
109745764 TGGTGGTGGAAAATGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
109745819 TGAGAAAAGT
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 112 1.00
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.26
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:109746585 original size:14 final size:14
Alignment explanation
Indices: 109746566--109746615 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
109746556 GAGTTGATTT
* *
109746566 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
109746580 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
109746595 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
109746609 TT-AAAAA
1 TTGAAAAA
109746616 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:109746732 original size:73 final size:75
Alignment explanation
Indices: 109746595--109746839 Score: 289
Period size: 76 Copynumber: 3.3 Consensus size: 75
109746585 AAAACAGAAA
* * ** *
109746595 TTGA-AAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATA
1 TTGACAAA-CAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATA
*
109746659 TGAGTT-A-ATTT
63 TGAGTTGATTTTT
* * * *
109746670 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGGGGCTCAACTCACCTTTCGAAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
109746735 GTTGATTTTT
66 GTTGATTTTT
* * * *
109746745 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATG
1 TTGACAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
109746810 AGTTGATTTTT
65 AGTTGATTTTT
* *
109746821 TTTACGAACAGAAATTGAA
1 TTGACAAACAGAAATTGAA
109746840 GAACAGAAAT
Statistics
Matches: 144, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
73 32 0.22
74 1 0.01
75 43 0.30
76 68 0.47
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (75 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:109746845 original size:14 final size:14
Alignment explanation
Indices: 109746826--109746853 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
109746816 TTTTTTTTAC
109746826 GAACAGAAATTGAA
1 GAACAGAAATTGAA
109746840 GAACAGAAATTGAA
1 GAACAGAAATTGAA
109746854 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:109746987 original size:14 final size:14
Alignment explanation
Indices: 109746968--109747017 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
109746958 GAGTTGATTT
* *
109746968 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
109746982 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
109746997 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
109747011 TT-AAAAA
1 TTGAAAAA
109747018 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:109747020 original size:162 final size:172
Alignment explanation
Indices: 109746827--109747351 Score: 556
Period size: 180 Copynumber: 3.0 Consensus size: 172
109746817 TTTTTTTACG
* * *
109746827 AACAGAAATTGAAGAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCAAGGCTCAACTCACCTC
1 AACAGAAATTGAA-AAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTC
* * *
109746891 TCGCAA-A-AG-TAGA-TTTTG-A-AAA-T-ACCT-CGACA-TGTGAACCCAAGGCTCAACTCAC
65 TCGCAATAGAGTTA-ATTTTTGAAGAAATTAAACTACCACAGCGTG-ACCCAAGGCTCAACTCAC
109746946 ATCTCGCAATATGAGTTGA-TTTTTG-AAAAATATAAATTGAAAA
128 ATCTCGCAATATGAGTTGATTTTTTGAAAAAATATAAATTGAAAA
109746989 AACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCT
1 AACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCT
* * * *
109747054 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
66 CGCAATA-GAGTTAATTTTTG----A-AGAAATT-AAACTACCACAGCGTGACCCAAGGCTCAAC
* *
109747119 TCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAAATATAAATTGAAAA
124 TCACATCTCGCAATATGAGTTGA-TTTTTTGAAAAAATATAAATTGAAAA
*
109747169 AACAGAAATTGAAAAGCAGAAATTAAAAAGACCTTAGCATGTGAGCCGAGACTCAACTCACCTCT
1 AACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCT
* * * * * *
109747234 CACAATATGAGTTGATTTTTTTGACAAACAGACATTGAAAAATACCTCAGCGTGTAAGCCAAGGC
66 CGCAATA-GAGTT-A-ATTTTTG----A-AGAAATT--AAACTACCACAGCGTG--ACCCAAGGC
* *
109747299 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAAATAGAAATTGAAAA
119 TCAACTCACATCTCGCAATATGAGTTGATTTTTTGAAAAAATATAAATTGAAAA
109747352 CACCTCAGCA
Statistics
Matches: 314, Mismatches: 23, Indels: 31
0.85 0.06 0.08
Matches are distributed among these distances:
161 2 0.01
162 64 0.20
163 1 0.00
165 3 0.01
166 7 0.02
172 1 0.00
173 3 0.01
174 1 0.00
176 2 0.01
177 36 0.11
178 3 0.01
179 6 0.02
180 94 0.30
181 1 0.00
182 18 0.06
183 32 0.10
184 7 0.02
185 33 0.11
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (172 bp):
AACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCT
CGCAATAGAGTTAATTTTTGAAGAAATTAAACTACCACAGCGTGACCCAAGGCTCAACTCACATC
TCGCAATATGAGTTGATTTTTTGAAAAAATATAAATTGAAAA
Found at i:109747167 original size:15 final size:15
Alignment explanation
Indices: 109747147--109747197 Score: 61
Period size: 14 Copynumber: 3.5 Consensus size: 15
109747137 GTTGATTTTT
* *
109747147 TTGAAAAAATATAAA
1 TTGAAAAAACAGAAA
109747162 TTGAAAAAACAGAAA
1 TTGAAAAAACAGAAA
*
109747177 TTG-AAAAGCAGAAA
1 TTGAAAAAACAGAAA
109747191 TT-AAAAA
1 TTGAAAAA
109747198 GACCTTAGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
14 16 0.50
15 16 0.50
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.20
Consensus pattern (15 bp):
TTGAAAAAACAGAAA
Found at i:109747232 original size:180 final size:182
Alignment explanation
Indices: 109746928--109747351 Score: 696
Period size: 180 Copynumber: 2.3 Consensus size: 182
109746918 CGACATGTGA
*
109746928 ACCCAAGGCTCAACTCACATCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTGAAAAAAC
1 ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTGAAAAAAC
*
109746992 AGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGC
66 AGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCAC
*
109747057 AATATGAGTT-A-ATTTTTGACAAACAGAAATTG-AAATTACCTCAGCGTGT
131 AATATGAGTTGATATTTTTGACAAACAGAAATTGAAAAATACCTCAGCGTGT
* *
109747106 -CCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAAATATAAATTGAAAAA
1 ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAAATATAAATTGAAAAA
*
109747170 ACAGAAATTGAAAAGCAGAAATTAAAAAGACCTTAGCATGTGAGCCGAGACTCAACTCACCTCTC
64 ACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTC
* *
109747235 ACAATATGAGTTGATTTTTTTGACAAACAGACATTGAAAAATACCTCAGCGTGT
129 ACAATATGAGTTGATATTTTTGACAAACAGAAATTGAAAAATACCTCAGCGTGT
* *
109747289 AAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAA
1 -ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTGAAAA
109747352 CACCTCAGCA
Statistics
Matches: 226, Mismatches: 12, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
177 33 0.15
179 6 0.03
180 94 0.42
181 1 0.00
182 19 0.08
183 33 0.15
184 7 0.03
185 33 0.15
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (182 bp):
ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTGAAAAAAC
AGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCAC
AATATGAGTTGATATTTTTGACAAACAGAAATTGAAAAATACCTCAGCGTGT
Found at i:109747310 original size:78 final size:75
Alignment explanation
Indices: 109747177--109747418 Score: 266
Period size: 78 Copynumber: 3.2 Consensus size: 75
109747167 AAAACAGAAA
* * * *
109747177 TTGAAAAGCAGAAATT-AAAAAGACCTTAGCATGTGAGCCGAGACTCAACTCACCTCTCACAATA
1 TTGAAAA-CAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATA
109747241 TGAGTTGATTTTT
63 TGAGTTGATTTTT
* * *
109747254 TTGACAAACAGACATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGA-AAACAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATA
109747319 TGAGTTGA-TTTT
63 TGAGTTGATTTTT
* *
109747331 TTGAAAAATAGAAATTG-AAAACACCTCAGCATGT-G--AGGCTCAACTCACCTCTCGCAACATG
1 TTG-AAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATG
109747392 AGTTGA--TTT
65 AGTTGATTTTT
*
109747401 TTGAAAAACATAAATTGA
1 TTG-AAAACAGAAATTGA
109747419 GCAGAAATTG
Statistics
Matches: 146, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
70 18 0.12
71 31 0.21
74 1 0.01
76 15 0.10
77 28 0.19
78 53 0.36
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (75 bp):
TTGAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:109747376 original size:71 final size:73
Alignment explanation
Indices: 109747220--109747582 Score: 285
Period size: 71 Copynumber: 4.8 Consensus size: 73
109747210 TGAGCCGAGA
* * * *
109747220 CTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACAGACATTGAAAAATACCTC-A-
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAGAAATTG-AAAATACCTCAAC
*
109747283 GCGTGTAAGCCAAGG
64 GCATGT--G---AGG
*
109747298 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTC-A-GC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAATACCTCAACGC
109747361 ATGTGAGG
66 ATGTGAGG
*
109747369 CTCAACTCACCTCTCGCAACATGAGTTGA-TTTTTGAAAAACATAAATTGAGCAGAAATTGAAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG----A-A-AAA-T----AGAAATTGAAAA
** *
109747433 TACCTCAACGGGTCTTGAGG
55 TACCTCAACGCAT-GTGAGG
* ** *
109747453 TTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-ATGAT--AAATTGAAAATACCTCAATGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAATACCTCAACG-
*
109747515 GACT-TGAGG
65 CA-TGTGAGG
* * *
109747524 TTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAATA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-A--AAAATAGAAATTGAAAATA
109747583 GAAATGGAAA
Statistics
Matches: 241, Mismatches: 21, Indels: 47
0.78 0.07 0.15
Matches are distributed among these distances:
70 6 0.02
71 90 0.37
72 1 0.00
73 1 0.00
74 2 0.01
75 3 0.01
76 18 0.07
77 32 0.13
78 29 0.12
79 1 0.00
81 17 0.07
82 1 0.00
83 2 0.01
84 32 0.13
85 6 0.02
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (73 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAATACCTCAACGC
ATGTGAGG
Found at i:109747482 original size:155 final size:158
Alignment explanation
Indices: 109747299--109747666 Score: 448
Period size: 155 Copynumber: 2.3 Consensus size: 158
109747289 AAGCCAAGGC
109747299 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTC-A-G-C
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAT--AAATTGAAAACACCTCAATGTC
* * *
109747361 A-TGTGAGGCTCAACTCACCTCTCGCAACATGAGTTGA-TTTTTG-A-AAAACATAAATTG-AGC
64 ACT-TGAGGCTCAACTCACCTCTCACAACATGAGTTGATTTTTTGAATAAAACAGAAATTGAAAC
* * *
109747421 AGAAATTGAAAATACCTCAACGGGTCTTGAGGT
128 AGAAATGGAAAACACCTC-A-GCGTCTTGAGGT
** * *
109747454 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-ATGATAAATTGAAAATACCTCAATGTGAC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAATTGAAAACACCTCAATGTCAC
* * *
109747518 TTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAATA
66 TTGAGGCTCAACTCACCTCTCACAACATGAGTTGATTTTTTGAA-TAAAACAGAAATTG-AAACA
109747583 GAAATGGAAAACACCTCAGCGTCTTGAGGT
129 GAAATGGAAAACACCTCAGCGTCTTGAGGT
* *
109747613 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAACACATAAATTAAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-A-ATAAATTGAAAA
109747667 AAAAGGAATT
Statistics
Matches: 182, Mismatches: 17, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
152 15 0.08
153 1 0.01
154 4 0.02
155 67 0.37
156 7 0.04
157 1 0.01
159 50 0.27
160 8 0.04
161 18 0.10
163 11 0.06
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (158 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAATTGAAAACACCTCAATGTCAC
TTGAGGCTCAACTCACCTCTCACAACATGAGTTGATTTTTTGAATAAAACAGAAATTGAAACAGA
AATGGAAAACACCTCAGCGTCTTGAGGT
Found at i:109747801 original size:75 final size:74
Alignment explanation
Indices: 109747710--109747993 Score: 351
Period size: 77 Copynumber: 3.8 Consensus size: 74
109747700 CGACGTGTGG
* *
109747710 CCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTAAAAAGCAAAAATTGAAAATAC
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAA-CAAAAATTGAAAATAC
109747775 CTCAGCGTGT
65 CTCAGCGTGT
* *
109747785 CCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGATAAAA-ATAGAATTTGAAAA
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-A-AAAACA-A-AAATTGAAAA
*
109747849 TATCTCAGCGTGT
62 TACCTCAGCGTGT
* * * *
109747862 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAAAAATTGAAATTACC
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAAAAATTGAAAATACC
109747926 TCAGC--GT
66 TCAGCGTGT
** * ** * *
109747933 CTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAA
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAAAAATTGAAAA
109747994 AAACGAAAAT
Statistics
Matches: 183, Mismatches: 20, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
71 36 0.20
72 18 0.10
73 16 0.09
74 4 0.02
75 43 0.23
76 7 0.04
77 59 0.32
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (74 bp):
CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAAAAATTGAAAATACC
TCAGCGTGT
Found at i:109747873 original size:77 final size:77
Alignment explanation
Indices: 109747676--109747975 Score: 350
Period size: 77 Copynumber: 4.0 Consensus size: 77
109747666 AAAAAGGAAT
** *
109747676 TAAAAATAGAATTTGAAAGGACCTC-GACGTGTGGCCCGAGACTCAACTCACCTCTCGCAATATG
1 TAAAAATAGAATTTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATG
*
109747740 AGTTGATTCTTTT-A
63 AGTTGATTTTTTTGA
** * * *
109747754 -AAAAGCAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGT
1 TAAAAATAGAATTTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
109747818 TGATTTTTTTGA
66 TGATTTTTTTGA
* *
109747830 TAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TAAAAATAGAATTTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
109747895 TGA--TTTTTGA
66 TGATTTTTTTGA
* * ** *
109747905 CAAACAA-A-AA-TTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACTTCTCGCAATATGAG
1 TAAA-AATAGAATTTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
109747965 TTGATTTTTTT
65 TTGATTTTTTT
109747976 TGAAACATAA
Statistics
Matches: 195, Mismatches: 21, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
71 36 0.18
73 19 0.10
74 2 0.01
75 51 0.26
76 3 0.02
77 83 0.43
78 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (77 bp):
TAAAAATAGAATTTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGA
Found at i:109747939 original size:416 final size:417
Alignment explanation
Indices: 109747298--109748054 Score: 998
Period size: 416 Copynumber: 1.8 Consensus size: 417
109747288 TAAGCCAAGG
* *
109747298 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTCAGCAT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTGAAAACACCTCAGCAT
*
109747363 GTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAAAACATAAATTGAGCAGAAATT
66 GTGAGGCTCAACTCACCTCTCACAACATGAGTTGATTTTTGAAAAACATAAATT--G-AGAAATT
* * **
109747428 GAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGATGA
128 GAAAATACCTCAACGGGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAACA
* * *
109747493 TAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTT
193 AAAATTGAAAATACCTCAATGCGACTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
* * * *
109747558 TGAATTAAAACAGAAATT-GAAAATA-G-AAATGGAAAACACCTCAGC-GTCTTGAGGTTCAACT
258 T---TTAAAACAGAAATTAAAAAAAACGAAAATGGAAAACACCTCAGCGGTCCTGAGGCTCAACT
109747619 CACCTCTCGCAATATGAGCTGATTTTTTTGAAACACATAAATTAAAAAAAAAGGAATTAAAAATA
320 CACCTCTCGCAATATGAGCTGATTTTTTTGAAACACATAAATTAAAAAAAAAGGAATTAAAAATA
109747684 GAATTTGAAAGGACCTCGACGTGTGGCCCGAGA
385 GAATTTGAAAGGACCTCGACGTGTGGCCCGAGA
*
109747717 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTT-AAAAAGCAAAAATTGAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAAA-CAAAAATTGAAAACACCTCAGC
* * *** * *
109747781 GTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGATA-A-AAA-T-AGAAT
64 ATGT---GAGGCTCAACTCACCTCTCACAACATGAGTTGATTTTTGAAAAACATAAATTGAGAAA
* * *
109747842 TTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAC
126 TTGAAAATACCTCAACGGGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG--
* * * *
109747906 AAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
189 -AACAAAAATTGAAAATACCTCAATGCGACTTGAGGCTCAACTCACCTCTCACAATATGAGTTGA
* * * *
109747969 TTTTTTTTGAAACATAAATTAAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCA
253 TTTTTTTTAAAACAGAAATTAAAAAAAACGAAAATGGAAAACACCTCAGCG-GTCCTGAGGCTCA
109748034 ACTCACCTCTCGCAATATGAG
317 ACTCACCTCTCGCAATATGAG
109748055 TTGAAATTAA
Statistics
Matches: 292, Mismatches: 33, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
413 12 0.04
414 5 0.02
415 7 0.02
416 113 0.39
417 1 0.00
418 49 0.17
419 36 0.12
420 27 0.09
421 3 0.01
422 1 0.00
423 38 0.13
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (417 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTGAAAACACCTCAGCAT
GTGAGGCTCAACTCACCTCTCACAACATGAGTTGATTTTTGAAAAACATAAATTGAGAAATTGAA
AATACCTCAACGGGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAACAAAA
ATTGAAAATACCTCAATGCGACTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTT
AAAACAGAAATTAAAAAAAACGAAAATGGAAAACACCTCAGCGGTCCTGAGGCTCAACTCACCTC
TCGCAATATGAGCTGATTTTTTTGAAACACATAAATTAAAAAAAAAGGAATTAAAAATAGAATTT
GAAAGGACCTCGACGTGTGGCCCGAGA
Found at i:109748153 original size:161 final size:158
Alignment explanation
Indices: 109747717--109748140 Score: 478
Period size: 161 Copynumber: 2.7 Consensus size: 158
109747707 TGGCCCGAGA
** *
109747717 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTAAAAAGCAAAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TAATTGAAAAA-CAAAAATTGAAAATACCTCAGC-
* * ** *
109747782 TGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT------TTGA-T-AAAAATA-
63 -GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAATAAATTAAAAAAAAC
* *
109747838 G-AATTTGAAAATATCTCAGCGTGTCCTGAGG
127 GAAAATTGAAAATACCTCAGCGTGTCCTGAGG
** * *
109747869 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTC
1 CTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAGCGTC
** * * *
109747934 TTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAAACG
66 CCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA---TTTTTGAAAAATAAATTAAAAAAAACG
109747999 AAAATTGAAAATACCTCAGCGTGTCCTGAGG
128 AAAATTGAAAATACCTCAGCGTGTCCTGAGG
*
109748030 CTCAACTCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAAATTGAAAATATCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAA-ACAAAAATTGAAAATACCTCAGCGT
*
109748093 GCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTGAAAAA
65 --CCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAA
109748141 GTAGAAATTA
Statistics
Matches: 232, Mismatches: 24, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
148 34 0.15
150 21 0.09
151 13 0.06
152 29 0.12
157 2 0.01
158 10 0.04
159 9 0.04
160 26 0.11
161 57 0.25
162 31 0.13
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (158 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAGCGTC
CCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAATAAATTAAAAAAAACGAAA
ATTGAAAATACCTCAGCGTGTCCTGAGG
Found at i:109748457 original size:75 final size:76
Alignment explanation
Indices: 109748280--109748618 Score: 433
Period size: 75 Copynumber: 4.5 Consensus size: 76
109748270 AGTGTGTAAT
* * *
109748280 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTAC
* *
109748345 CTCAGCATGTGAAC
66 CTCA--ACGTG-TC
* *
109748359 C-AAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAA-TAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTAC
109748422 CTCAACGTGTC
66 CTCAACGTGTC
* ** * *
109748433 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA----ATTTTGAAAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTAC
*
109748494 CTCAGCGTGTC
66 CTCAACGTGTC
**
109748505 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTT-AACAACAGAAATTGAAATTA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAA-AACAGAAATTGAAATTA
*
109748568 CCTCAGCGTGTC
65 CCTCAACGTGTC
*
109748580 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
109748619 GAAAAACAAA
Statistics
Matches: 235, Mismatches: 18, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
71 21 0.09
72 46 0.20
74 3 0.01
75 99 0.42
76 3 0.01
77 7 0.03
78 55 0.23
79 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (76 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTAC
CTCAACGTGTC
Found at i:109748538 original size:147 final size:147
Alignment explanation
Indices: 109748280--109748636 Score: 427
Period size: 147 Copynumber: 2.4 Consensus size: 147
109748270 AGTGTGTAAT
* * * *
109748280 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTAGCAATATAAGTTGA-----TTTTGAAAACAGAAATTGAAAATAC
109748345 CTCAGCATGTGAACCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAA-AACA
61 CTCAGCA-GTGAACCAAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTT-AACAACA
109748409 GAAATTGAAA-TACCTCAACGTGTC
123 GAAATTGAAATTACCTCAACGTGTC
* ** * *
109748433 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTAGCAATATAAGTTG-ATTTTGAAAACAGAAATTGAAAATACCTCA
* * ** *
109748498 GC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATT
65 GCAGTGAACC-AAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTAACAACAGAAATT
*
109748561 GAAATTACCTCAGCGTGTC
129 GAAATTACCTCAACGTGTC
* *
109748580 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAA
1 CTGAGGCTCAACTCACCTCTAGCAATATAAGTTGATTTTG-AAAACAGAAATTGAAAA
109748637 GGCTTAACTC
Statistics
Matches: 179, Mismatches: 20, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
145 2 0.01
146 33 0.18
147 85 0.47
149 29 0.16
153 29 0.16
154 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (147 bp):
CTGAGGCTCAACTCACCTCTAGCAATATAAGTTGATTTTGAAAACAGAAATTGAAAATACCTCAG
CAGTGAACCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTAACAACAGAAATTGA
AATTACCTCAACGTGTC
Found at i:109748783 original size:70 final size:70
Alignment explanation
Indices: 109748636--109748810 Score: 212
Period size: 70 Copynumber: 2.5 Consensus size: 70
109748626 AAAAATTAAA
* * * * * *
109748636 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAGCGTG
109748700 CCCCG
66 CCCCG
* *
109748705 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAA-AAAAATTAAAAATACCTCATCGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAGCGT
* **
109748769 GTCTTG
65 GCCCCG
109748775 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
109748811 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
69 27 0.29
70 61 0.66
71 4 0.04
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAGCGTG
CCCCG
Found at i:109757132 original size:16 final size:16
Alignment explanation
Indices: 109757113--109757152 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
109757103 TGTGAATAAT
109757113 AAATATATAAAATAT-A
1 AAATAT-TAAAATATCA
109757129 AAATATTAAAATATCA
1 AAATATTAAAATATCA
109757145 AAATATTA
1 AAATATTA
109757153 GATAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATATTAAAATATCA
Found at i:109757138 original size:8 final size:8
Alignment explanation
Indices: 109757113--109757175 Score: 56
Period size: 8 Copynumber: 7.4 Consensus size: 8
109757103 TGTGAATAAT
109757113 AAATATATA
1 AAATAT-TA
109757122 AAATA-TA
1 AAATATTA
109757129 AAATATTA
1 AAATATTA
*
109757137 AAATATCA
1 AAATATTA
109757145 AAATATTA
1 AAATATTA
*
109757153 GATAATAATA
1 -A-AATATTA
109757163 ATAATATTGA
1 A-AATATT-A
109757173 AAA
1 AAA
109757176 AAAAAAATAA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
7 7 0.15
8 16 0.35
9 15 0.33
10 8 0.17
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (8 bp):
AAATATTA
Found at i:109757357 original size:22 final size:23
Alignment explanation
Indices: 109757306--109757368 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 23
109757296 TGATAATATT
*
109757306 AAATATGTACATAATATAGTGTTAA
1 AAATATATACATAA-ATAG-GTTAA
109757331 AAATATATACATAAATA-GTTAA
1 AAATATATACATAAATAGGTTAA
* *
109757353 GAATATA-ATATAAATA
1 AAATATATACATAAATA
109757369 ACATGTAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 8 0.23
22 11 0.31
24 3 0.09
25 13 0.37
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (23 bp):
AAATATATACATAAATAGGTTAA
Found at i:109757367 original size:21 final size:22
Alignment explanation
Indices: 109757306--109757394 Score: 65
Period size: 25 Copynumber: 3.8 Consensus size: 22
109757296 TGATAATATT
*
109757306 AAATATGTACATAATATAGTGTTAA
1 AAATATATACATAA-ATA--GTTAA
109757331 AAATATATACATAAATAGTTAA
1 AAATATATACATAAATAGTTAA
*
109757353 GAATATAATATAAATAACAT-G-TAGA
1 -AA-AT-ATATACATAA-ATAGTTA-A
*
109757378 AAATATATATATAAATA
1 AAATATATACATAAATA
109757395 ATATAATTTA
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
21 2 0.04
22 14 0.25
23 4 0.07
24 9 0.16
25 24 0.44
26 2 0.04
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (22 bp):
AAATATATACATAAATAGTTAA
Found at i:109757480 original size:22 final size:23
Alignment explanation
Indices: 109757455--109757505 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
109757445 ATAGAATTTA
* *
109757455 AATATACCTAATATATTA-AAAG
1 AATATACATAATATAATATAAAG
* *
109757477 AATATATATAATATAATATTAAG
1 AATATACATAATATAATATAAAG
109757500 AATATA
1 AATATA
109757506 TAATAACAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (23 bp):
AATATACATAATATAATATAAAG
Found at i:109757803 original size:16 final size:17
Alignment explanation
Indices: 109757777--109757823 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
109757767 TTTGATTAAT
*
109757777 CTTCAAAAAAAACTAG-
1 CTTCACAAAAAACTAGC
* *
109757793 CTTCTCCAAAAACTAGC
1 CTTCACAAAAAACTAGC
109757810 CTTCACAAAAAACT
1 CTTCACAAAAAACT
109757824 CTTCTCCTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 13 0.52
17 12 0.48
ACGTcount: A:0.47, C:0.28, G:0.04, T:0.21
Consensus pattern (17 bp):
CTTCACAAAAAACTAGC
Found at i:109770640 original size:11 final size:11
Alignment explanation
Indices: 109770624--109770654 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
109770614 ATACCCATAC
109770624 CCCATACCTTG
1 CCCATACCTTG
*
109770635 CCCATACCTTT
1 CCCATACCTTG
109770646 CCCATACCT
1 CCCATACCT
109770655 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:109771228 original size:18 final size:18
Alignment explanation
Indices: 109771201--109771293 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
109771191 TACGACCGTT
109771201 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
109771219 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
109771237 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
109771255 TATGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
109771273 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
109771291 TAC
1 TAC
109771294 AGTAGTTGGG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:109775362 original size:11 final size:11
Alignment explanation
Indices: 109775346--109775376 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
109775336 ATACCCATAC
109775346 CCCATACCTTG
1 CCCATACCTTG
*
109775357 CCCATACCTTT
1 CCCATACCTTG
109775368 CCCATACCT
1 CCCATACCT
109775377 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:109776064 original size:103 final size:103
Alignment explanation
Indices: 109775880--109776205 Score: 510
Period size: 103 Copynumber: 3.2 Consensus size: 103
109775870 CCGCGCAACA
* * **
109775880 ATTTGAGCACCTTCGAAAAGGTTTGAACTTTATACGAACATTTATATTTTAAACATTTTAGTGTT
1 ATTTGAGCACCTTCGAAAAGGTTTGACCTTTATACGAGCATTTATATTTTAAACATTTTAGCATT
* * * * *
109775945 CACTTAATTTTATATTATGAAGCTCTTG-AAAATTCATT
66 CACTTAATTTTGTATTATGAGGCGCTTGTAAAA-CCTTT
109775983 ATTTGAGCACCTTCGAAAAGGTTTGACCTTTATACGAGCATTTATATTTTAAACATTTTAGCATT
1 ATTTGAGCACCTTCGAAAAGGTTTGACCTTTATACGAGCATTTATATTTTAAACATTTTAGCATT
109776048 CACTTAATTTTGTATTATGAGGCGCTTGTAAAACCTTT
66 CACTTAATTTTGTATTATGAGGCGCTTGTAAAACCTTT
* * * *
109776086 ATTTGAACACCTTCGAAAAGGTTTGACCTTTATACAAGTATTTATATTTTAAACATTTTAACATT
1 ATTTGAGCACCTTCGAAAAGGTTTGACCTTTATACGAGCATTTATATTTTAAACATTTTAGCATT
*
109776151 TACTTAATTTTGTATTATGAGGCGCTTGTAAAACCTTT
66 CACTTAATTTTGTATTATGAGGCGCTTGTAAAACCTTT
109776189 ATTTGAGCACCTTCGAA
1 ATTTGAGCACCTTCGAA
109776206 TTTGGCCTTC
Statistics
Matches: 207, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
103 203 0.98
104 4 0.02
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.41
Consensus pattern (103 bp):
ATTTGAGCACCTTCGAAAAGGTTTGACCTTTATACGAGCATTTATATTTTAAACATTTTAGCATT
CACTTAATTTTGTATTATGAGGCGCTTGTAAAACCTTT
Found at i:109782929 original size:30 final size:30
Alignment explanation
Indices: 109782893--109783066 Score: 237
Period size: 30 Copynumber: 5.8 Consensus size: 30
109782883 ACTTTTCTCA
*
109782893 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
109782923 ACTAGCCACACCTT-TCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
109782952 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
109782982 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
** *
109783012 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAACTCC
*
109783042 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
109783067 CTTGTACCTA
Statistics
Matches: 130, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
29 31 0.24
30 99 0.76
ACGTcount: A:0.27, C:0.49, G:0.04, T:0.20
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:109783563 original size:23 final size:23
Alignment explanation
Indices: 109783537--109783653 Score: 64
Period size: 25 Copynumber: 5.0 Consensus size: 23
109783527 ATTATTATCT
109783537 TTCTTAATATTATATTATATATA
1 TTCTTAATATTATATTATATATA
* * **
109783560 TTCTT-TTAATATATTAGGTATA
1 TTCTTAATATTATATTATATATA
109783582 TT-TTAA-ATTCTATATTACGTATATA
1 TTCTTAATA-T-TATATTA--TATATA
* * * *
109783607 -TATT-ATACTATTTTATGTATA
1 TTCTTAATATTATATTATATATA
*
109783628 TATCTTTAATATTATATTATTTATA
1 T-TC-TTAATATTATATTATATATA
109783653 T
1 T
109783654 ATATATTTTT
Statistics
Matches: 68, Mismatches: 15, Indels: 20
0.66 0.15 0.19
Matches are distributed among these distances:
21 8 0.12
22 15 0.22
23 19 0.28
24 4 0.06
25 22 0.32
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.56
Consensus pattern (23 bp):
TTCTTAATATTATATTATATATA
Found at i:109783629 original size:25 final size:26
Alignment explanation
Indices: 109783601--109783741 Score: 78
Period size: 25 Copynumber: 5.5 Consensus size: 26
109783591 CTATATTACG
*
109783601 TATATATATT-ATACTATTTTATGTA
1 TATATATATTAATACTATATTATGTA
* * *
109783626 TATATCT-TTAATATTATATTATTTA
1 TATATATATTAATACTATATTATGTA
** * *
109783651 TATATATATTTTTTAC-ATGTTATCTTA
1 TATATATA-TTAATACTATATTAT-GTA
* *
109783678 TGTATATATCTTA-ACTATATTATGTA
1 TATATATAT-TAATACTATATTATGTA
* * *
109783704 TGTAT-TTTTAACACTATATTATGTA
1 TATATATATTAATACTATATTATGTA
* *
109783729 CATAT-TTTTAATA
1 TATATATATTAATA
109783742 TTATCACGTA
Statistics
Matches: 91, Mismatches: 18, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
24 4 0.04
25 49 0.54
26 16 0.18
27 22 0.24
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (26 bp):
TATATATATTAATACTATATTATGTA
Found at i:109783700 original size:27 final size:26
Alignment explanation
Indices: 109783618--109783708 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
109783608 ATTATACTAT
*
109783618 TTTATGTATATATCTTTAATATTATATTA
1 TTTATGTATATATC-TT-A-ACTATATTA
* * * *
109783647 TTTATATATATATTTTTTAC-ATGTTA
1 TTTATGTATATA-TCTTAACTATATTA
109783673 TCTTATGTATATATCTTAACTATATTA
1 T-TTATGTATATATCTTAACTATATTA
*
109783700 TGTATGTAT
1 TTTATGTAT
109783709 TTTTAACACT
Statistics
Matches: 49, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
26 18 0.37
27 17 0.35
29 13 0.27
30 1 0.02
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (26 bp):
TTTATGTATATATCTTAACTATATTA
Found at i:109783915 original size:8 final size:7
Alignment explanation
Indices: 109783904--109783943 Score: 53
Period size: 8 Copynumber: 5.3 Consensus size: 7
109783894 TATTATTCTA
109783904 ATATTTT
1 ATATTTT
109783911 GATATTTT
1 -ATATTTT
109783919 AATATTTT
1 -ATATTTT
109783927 ATATTTAT
1 ATATTT-T
109783935 ATATTTT
1 ATATTTT
109783942 AT
1 AT
109783944 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
7 9 0.30
8 21 0.70
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (7 bp):
ATATTTT
Found at i:109783930 original size:23 final size:23
Alignment explanation
Indices: 109783904--109783947 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
109783894 TATTATTCTA
109783904 ATATTT-TGATATTTTAATATTTT
1 ATATTTAT-ATATTTTAATATTTT
*
109783927 ATATTTATATATTTTATTATT
1 ATATTTATATATTTTAATATT
109783948 CACATCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
ATATTTATATATTTTAATATTTT
Found at i:109783932 original size:15 final size:15
Alignment explanation
Indices: 109783897--109783943 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
109783887 TAATTATTAT
*
109783897 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
109783913 TATTTTAATATTTTA
1 TATTTTAATATTTTA
109783928 TA-TTTATATATTTTA
1 TATTTTA-ATATTTTA
109783943 T
1 T
109783944 TATTCACATC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 4 0.14
15 12 0.41
16 13 0.45
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:109791030 original size:69 final size:68
Alignment explanation
Indices: 109790881--109791054 Score: 181
Period size: 69 Copynumber: 2.5 Consensus size: 68
109790871 CTTTCCAAGG
* **
109790881 AAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTT
1 AAAATAAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTT
109790945 TTTAA
65 TTT-A
* ** * *
109790950 AAAATAAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAATAAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-T
109791015 GTTT-
65 -TTTA
* ** * *
109791019 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATAAACTCATATTGCGAGAAGTGAGTTGAGCCT
109791055 TTTAATTTTT
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
69 82 0.93
70 3 0.03
71 3 0.03
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (68 bp):
AAAATAAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTT
TTA
Found at i:109791186 original size:75 final size:74
Alignment explanation
Indices: 109791072--109791766 Score: 406
Period size: 72 Copynumber: 9.5 Consensus size: 74
109791062 TTTGTTTTTC
* ** *
109791072 AAAATCAACTCATATTGCTAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
109791137 GTTGTTAAAA
66 GTT-TTAAAA
109791147 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
109791212 GTTTT--CA
66 GTTTTAAAA
* * * * *
109791219 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
109791284 GTTTTTAAAAA
66 G-TTTT-AAAA
* ** * *** * *** * **
109791295 AAAAT-GACTCATATTGCGAGAGGTGAGTTAAGCCT-TTTA-A--TTTTTGT-TTTTCAAAATC-
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
**
109791353 -----AACT
66 GTTTTAAAA
* * ** * * ** * * ** * * * **
109791357 CATAT-TGCT-AGA--G-GTGAGTTGAGCCTCAG-GACACG-CTGA-GGTAATTTCAATTTC--T
1 AAAATCAACTCATATTGCGAGAAATGAG-TTGAGCCTCAGGAC--ACGCTGAGGT-AATTTCAAT
* ***
109791412 GTTGT-TAAAAAAA
62 -TTCTGTTTTAAAA
109791425 AA--TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
109791488 GTTTT--CA
66 GTTTTAAAA
* * * * *
109791495 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
109791560 GTTTTCAAAAAAA
66 GTTTT----AAAA
* * * * *
109791573 AAAATTTCAACTTATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGTATTTTCAATTT
1 AAAA--TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
109791638 CTGTTTTCAAAAA
64 CTGTTTT--AAAA
* ** * *
109791651 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
109791715 TCTGTTTTTAAAA
63 TCTG-TTTTAAAA
** *
109791728 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
109791767 ATTACACACT
Statistics
Matches: 488, Mismatches: 88, Indels: 85
0.74 0.13 0.13
Matches are distributed among these distances:
58 8 0.02
59 4 0.01
61 3 0.01
62 10 0.02
63 1 0.00
64 4 0.01
66 1 0.00
67 2 0.00
68 5 0.01
70 23 0.05
71 21 0.04
72 127 0.26
73 5 0.01
74 3 0.01
75 90 0.18
76 35 0.07
77 39 0.08
78 38 0.08
79 4 0.01
80 65 0.13
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAA
Found at i:109791329 original size:147 final size:147
Alignment explanation
Indices: 109791058--109791766 Score: 780
Period size: 147 Copynumber: 4.9 Consensus size: 147
109791048 TAAGCCTTTT
* * * *
109791058 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTAAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTG-TTTTCAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* *
109791123 TAATTTCAATTTCTGTTGTT-AAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
65 TATTTTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
109791187 ACACGCTGAGGTAATTTC
130 ACACGCTGAGGTAATTTC
** * *
109791205 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* *
109791270 TATTTTCAATTTCTGTTTTTAAAAAAAAAT-GACTCATATTGCGAG--A-G-G-TGAG--TTA--
65 TATTTTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
* **
109791325 A-GC-CT--TTTAATTT-
130 ACACGCTGAGGTAATTTC
* *** * *
109791338 --TTGT-TTTTCAAA--ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATT-TCTGTTTTCAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* *
109791398 TAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
65 TATTTTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
109791463 ACACGCTGAGGTAATTTC
130 ACACGCTGAGGTAATTTC
** * *
109791481 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* *
109791546 TATTTTCAATTTCTGTTTTCAAAAAAAAAAATTTCAACTTATATTGCGAGAAATGAGTTGAGCCT
65 TATTTTCAATTTCTGTTTT--TAAAAAAAAA--TCAACTCATATTGCGAGAAATGAGTTGAGCCT
* * * *
109791611 TAAGACACGTTGAGGTATTTTC
126 CAGGACACGCTGAGGTAATTTC
*
109791633 AATTTCTGTTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACAT
1 AATTTCTGTTTTC-----AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACAC
**
109791697 GCTGAGGTATTTTCAATTTCTGTTTTT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
58 GCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG
*
109791761 CTTCAG
123 CCTCAG
109791767 ATTACACACT
Statistics
Matches: 464, Mismatches: 62, Indels: 66
0.78 0.10 0.11
Matches are distributed among these distances:
128 69 0.15
129 15 0.03
131 7 0.02
132 2 0.00
133 1 0.00
134 10 0.02
136 4 0.01
137 1 0.00
138 2 0.00
139 1 0.00
140 4 0.01
142 10 0.02
143 1 0.00
144 2 0.00
145 7 0.02
146 9 0.02
147 80 0.17
148 67 0.14
150 9 0.02
152 62 0.13
153 29 0.06
155 9 0.02
156 31 0.07
157 4 0.01
158 28 0.06
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (147 bp):
AATTTCTGTTTTCAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
ATTTTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
CACGCTGAGGTAATTTC
Found at i:109791344 original size:56 final size:54
Alignment explanation
Indices: 109791272--109791382 Score: 134
Period size: 53 Copynumber: 2.0 Consensus size: 54
109791262 CGTTGAGGTA
109791272 TTTTCAATTTCTGTTTTTAAAAAAAAATGACTCATATTGCGAGAGGTGAGTTAAGCC
1 TTTTCAATTTCTGTTTTT-AAAAAAAA--ACTCATATTGCGAGAGGTGAGTTAAGCC
* * ** * *
109791329 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGTTTTTAAAAAAAAACTCATATTGCGAGAGGTGAGTTAAGCC
109791382 T
1 T
109791383 CAGGACACGC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 27 0.56
55 5 0.10
56 12 0.25
57 4 0.08
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (54 bp):
TTTTCAATTTCTGTTTTTAAAAAAAAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:109791363 original size:275 final size:276
Alignment explanation
Indices: 109790881--109791574 Score: 1120
Period size: 276 Copynumber: 2.6 Consensus size: 276
109790871 CTTTCCAAGG
* * * * *
109790881 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAA-TT-T
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * * * * ** * ** *
109790944 -TTTTAAAAAATAAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
66 GTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* * *
109791008 AGTTTATG-TTTT-----AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
131 AATTTCTGTTTTTAAAAAAAAATGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
109791067 TTTTCAAAATCAACTCATATTGCTAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
196 TTTTCAAAATCAACTCATATTGCTAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
109791132 TTTCTGTTGTT-AAAA
261 TTTCTGTTGTTAAAAA
109791147 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
109791212 GTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
66 GTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
109791277 AATTTCTGTTTTTAAAAAAAAATGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
131 AATTTCTGTTTTTAAAAAAAAATGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
*
109791342 TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
196 TTTTCAAAATCAACTCATATTGCTAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
109791407 TTTCTGTTGTTAAAAA
261 TTTCTGTTGTTAAAAA
109791423 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
109791488 GTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
66 GTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
*
109791553 AATTTCTGTTTTCAAAAAAAAA
131 AATTTCTGTTTTTAAAAAAAAA
109791575 AATTTCAACT
Statistics
Matches: 396, Mismatches: 22, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
266 55 0.14
267 2 0.01
268 1 0.00
269 58 0.15
270 4 0.01
275 121 0.31
276 155 0.39
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (276 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
AATTTCTGTTTTTAAAAAAAAATGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
TTTTCAAAATCAACTCATATTGCTAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTGTTGTTAAAAA
Found at i:109791397 original size:128 final size:129
Alignment explanation
Indices: 109791205--109791611 Score: 397
Period size: 128 Copynumber: 3.0 Consensus size: 129
109791195 AGGTAATTTC
* *
109791205 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
* * * **
109791270 TATTTTCAATTTCTGTTTTTAAAAAAAAAT-GACTCATATTGCGAGAGGTGAGTTAAGCCTTTT
66 TAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTTTT
* * ** *
109791333 AATTTTTGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
109791397 GTAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
65 GTAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTT-A-----A-
**
109791462 GACACGCTGAGGT
123 G---C-CT--TTT
*
109791475 AATTTCAATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 AA-TT-----TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* * *
109791540 TTGAGGTATTTTCAATTTCTGTT-TTCAAAAAAAAAAATTTCAACTTATATTGCGAGAAATGAGT
60 CTGAGGTAATTTCAATTTCTGTTGTT---AAAAAAAAA--TCAACTCATATTGCGAGAAATGAGT
*
109791604 TGAGCCTT
120 TAAGCCTT
109791612 AAGACACGTT
Statistics
Matches: 227, Mismatches: 25, Indels: 43
0.77 0.08 0.15
Matches are distributed among these distances:
128 76 0.33
129 30 0.13
130 1 0.00
135 1 0.00
136 1 0.00
139 1 0.00
140 2 0.01
141 2 0.01
142 4 0.02
143 2 0.01
145 1 0.00
146 1 0.00
147 11 0.05
148 60 0.26
150 9 0.04
152 25 0.11
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (129 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTTTT
Found at i:109791473 original size:76 final size:75
Alignment explanation
Indices: 109791347--109791766 Score: 524
Period size: 76 Copynumber: 5.5 Consensus size: 75
109791337 TTTGTTTTTC
* ** *
109791347 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
109791412 GTTGTTAAAAA
66 GTT-TTAAAAA
*
109791423 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
109791488 GTTTT---CA
66 GTTTTAAAAA
* * * *
109791495 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
109791560 GTTTTCAAAAAAA
66 GTTTT---AAAAA
* * * *
109791573 AAAATTTCAACTTATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGTATTTTCAATTT
1 AAAA--TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
109791638 CTGTTTTCAAAAA
64 CTGTTTT-AAAAA
* ** *
109791651 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
*
109791715 TCTGTTTTTAAAA
63 TCTGTTTTAAAAA
** *
109791728 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
109791767 ATTACACACT
Statistics
Matches: 310, Mismatches: 22, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
72 66 0.21
75 3 0.01
76 95 0.31
77 39 0.13
78 42 0.14
80 65 0.21
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTAAAAA
Found at i:109791938 original size:75 final size:75
Alignment explanation
Indices: 109791789--109791975 Score: 272
Period size: 75 Copynumber: 2.5 Consensus size: 75
109791779 GGTATTTTTT
* * *
109791789 TCAATTCATATTGCGAGAGGTGAATTGAGCCTCAGG-ACACGCTGAGCTATTTTCAATTTCTGCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTACACGCTGAGCTATTTTCAATTTCTGCT
109791853 TTTCAAAAAAA
66 TTTC-AAAAAA
*
109791864 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGC-GTTTTCAATTTCTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT-ACACGCTGA-GCTATTTTCAATTTCTG
109791928 CTTTTC-AAAAA
64 CTTTTCAAAAAA
* *
109791939 TCAACTCATATTGCGAGATGTGAGTTGAGCCTTGGGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
109791976 TTACATGTCG
Statistics
Matches: 103, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
75 73 0.71
77 28 0.27
78 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (75 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTACACGCTGAGCTATTTTCAATTTCTGCT
TTTCAAAAAA
Found at i:109793934 original size:23 final size:23
Alignment explanation
Indices: 109793908--109794005 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
109793898 ATAAGTGCCA
109793908 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
109793931 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
109793954 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
109793976 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
109793999 CACTGAT
1 CACTGAT
109794006 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:109793973 original size:45 final size:45
Alignment explanation
Indices: 109793915--109794003 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
109793905 CCACACTGAT
* *
109793915 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
109793960 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
109794004 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:109794171 original size:22 final size:23
Alignment explanation
Indices: 109794129--109794175 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
109794119 AGTGACACAC
109794129 TTGTATCCAATTCTATTCCTAAG
1 TTGTATCCAATTCTATTCCTAAG
109794152 TTGTATCCAATTC-ATTCCTAAG
1 TTGTATCCAATTCTATTCCTAAG
109794174 TT
1 TT
109794176 CAACCGGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.45
Consensus pattern (23 bp):
TTGTATCCAATTCTATTCCTAAG
Found at i:109795382 original size:30 final size:30
Alignment explanation
Indices: 109795348--109795411 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 30
109795338 GGCTATCACA
*
109795348 ACCAACTCCACTAGCCACACCTT-CTCCACC
1 ACCAAATCCACTAGCCACA-CTTGCTCCACC
109795378 ACCAAATCCACTAGCCACACTTGCTCCACC
1 ACCAAATCCACTAGCCACACTTGCTCCACC
109795408 ACCA
1 ACCA
109795412 CTTGTACCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 3 0.09
30 29 0.91
ACGTcount: A:0.30, C:0.50, G:0.05, T:0.16
Consensus pattern (30 bp):
ACCAAATCCACTAGCCACACTTGCTCCACC
Found at i:109795940 original size:23 final size:23
Alignment explanation
Indices: 109795903--109796030 Score: 77
Period size: 23 Copynumber: 5.5 Consensus size: 23
109795893 CTTTTTTTGT
109795903 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
109795926 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
109795948 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* * *
109795971 TATTACATATATATATT-ATACTA
1 TATTATATATAT-TCTTAATATTA
* *
109795994 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
109796019 TATTATTTATAT
1 TATTATATATAT
109796031 ATATATATTT
Statistics
Matches: 80, Mismatches: 16, Indels: 16
0.71 0.14 0.14
Matches are distributed among these distances:
21 3 0.04
22 15 0.19
23 36 0.45
24 8 0.10
25 18 0.22
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:109796005 original size:25 final size:26
Alignment explanation
Indices: 109795977--109796117 Score: 80
Period size: 25 Copynumber: 5.6 Consensus size: 26
109795967 TCTATATTAC
*
109795977 ATATATATATT-ATACTATTTTATGT
1 ATATATATATTAATACTATATTATGT
* * *
109796002 ATATATCT-TTAATATTATATTATTT
1 ATATATATATTAATACTATATTATGT
* * *
109796027 ATATATATA-TATTTAC-ATGTTATCTT
1 ATATATATATTA-ATACTATATTAT-GT
* *
109796053 ATGTATATATCTTA-ACTATATTATGT
1 ATATATATAT-TAATACTATATTATGT
* * *
109796079 ATGTAT-TTTTAACACTATATTATGT
1 ATATATATATTAATACTATATTATGT
* *
109796104 ACATAT-TTTTAATA
1 ATATATATATTAATA
109796118 TTATCACATA
Statistics
Matches: 90, Mismatches: 18, Indels: 16
0.73 0.15 0.13
Matches are distributed among these distances:
24 4 0.04
25 58 0.64
26 21 0.23
27 6 0.07
28 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.54
Consensus pattern (26 bp):
ATATATATATTAATACTATATTATGT
Found at i:109796062 original size:30 final size:29
Alignment explanation
Indices: 109795983--109796062 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 29
109795973 TTACATATAT
* * * *
109795983 ATATTATACTATTTTATGTATATATCTTTA
1 ATATTATATTA-TGTATATATATATATTTA
*
109796013 ATATTATATTATTTATATATATATATTTA
1 ATATTATATTATGTATATATATATATTTA
* *
109796042 CATGTTATCTTATGTATATAT
1 -ATATTATATTATGTATATAT
109796063 CTTAACTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
29 16 0.37
30 27 0.63
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.56
Consensus pattern (29 bp):
ATATTATATTATGTATATATATATATTTA
Found at i:109796295 original size:16 final size:15
Alignment explanation
Indices: 109796271--109796318 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
109796261 TAATTATTAT
*
109796271 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
109796287 TATTTTAATATTTTA
1 TATTTTAATATTTTA
109796302 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
109796318 T
1 T
109796319 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:109796306 original size:7 final size:8
Alignment explanation
Indices: 109796271--109796322 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
109796261 TAATTATTAT
*
109796271 TATTCTAA
1 TATTTTAA
*
109796279 TATTTTGA
1 TATTTTAA
109796287 TATTTTAA
1 TATTTTAA
109796295 TATTTT-A
1 TATTTTAA
109796302 TATTTTATA
1 TATTTTA-A
*
109796311 TATTTTAT
1 TATTTTAA
109796319 TATT
1 TATT
109796323 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:109799919 original size:129 final size:129
Alignment explanation
Indices: 109799660--109799899 Score: 410
Period size: 129 Copynumber: 1.9 Consensus size: 129
109799650 AATATTGATC
*
109799660 ATTTGAAGATTCAAATAGAATGTTTTGAAGCTTGGATACTAATTTAAAACCTAAGTCATAGTTCA
1 ATTTGAAGATTCAAATAAAATGTTTTGAAGCTTGGATACTAATTTAAAACCTAAGTCATAGTTCA
* * *
109799725 AGCAATGTTGTTGGAACCACATTGGATCGTCTAGTCAGATTGGTTGAATCAAGAATTGACCGGT
66 AGCAATGTTGTTGGAACCACATTCGACCGTCTAGTCAAATTGGTTGAATCAAGAATTGACCGGT
109799789 ATTTGAAGATTCAAATAAAATGTTTTGAAGCTT-GACTACTAATTTAAAACCTAAGTCATAGTTC
1 ATTTGAAGATTCAAATAAAATGTTTTGAAGCTTGGA-TACTAATTTAAAACCTAAGTCATAGTTC
* *
109799853 GAGCAATGTTGTTGGAACCATATTCGACCGTCTAGTCAAATTGGTTG
65 AAGCAATGTTGTTGGAACCACATTCGACCGTCTAGTCAAATTGGTTG
109799900 GATCGGGAAT
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
128 2 0.02
129 102 0.98
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (129 bp):
ATTTGAAGATTCAAATAAAATGTTTTGAAGCTTGGATACTAATTTAAAACCTAAGTCATAGTTCA
AGCAATGTTGTTGGAACCACATTCGACCGTCTAGTCAAATTGGTTGAATCAAGAATTGACCGGT
Found at i:109800462 original size:16 final size:17
Alignment explanation
Indices: 109800441--109800480 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
109800431 GACTCATATT
109800441 TTAAATTAAAT-TAAAA
1 TTAAATTAAATATAAAA
109800457 TTAAA-TAAATATAAAA
1 TTAAATTAAATATAAAA
109800473 -TAAATTAA
1 TTAAATTAA
109800481 TATCATACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAATTAAATATAAAA
Found at i:109800476 original size:15 final size:16
Alignment explanation
Indices: 109800441--109800483 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
109800431 GACTCATATT
109800441 TTAAATTAAAT-TAAAA
1 TTAAA-TAAATATAAAA
109800457 TTAAATAAATATAAAA
1 TTAAATAAATATAAAA
*
109800473 -TAAATTAATAT
1 TTAAATAAATAT
109800484 CATACTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 15 0.60
16 10 0.40
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
TTAAATAAATATAAAA
Found at i:109809593 original size:16 final size:17
Alignment explanation
Indices: 109809566--109809597 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
109809556 TAATAAATGA
109809566 TAAATATATAAAATTAT
1 TAAATATATAAAATTAT
109809583 TAAATAT-TAAAATTA
1 TAAATATATAAAATTA
109809598 AAATTACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATATATAAAATTAT
Found at i:109810220 original size:14 final size:15
Alignment explanation
Indices: 109810201--109810242 Score: 59
Period size: 14 Copynumber: 2.8 Consensus size: 15
109810191 CTCAAATTTG
*
109810201 ATATTTTAATTT-AT
1 ATATTTTAATTTGAC
109810215 ATATTTTAATTTGAC
1 ATATTTTAATTTGAC
109810230 ATAATTTTAATTT
1 AT-ATTTTAATTT
109810243 CTTTTATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 12 0.48
15 3 0.12
16 10 0.40
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (15 bp):
ATATTTTAATTTGAC
Found at i:109811639 original size:266 final size:258
Alignment explanation
Indices: 109810953--109811678 Score: 737
Period size: 266 Copynumber: 2.8 Consensus size: 258
109810943 ATCAAAAAAG
* * * * *
109810953 CACACATGTAAATGTACATAATAGAACTGGAACCTAGACACTTAAGATCCCAGGC-CCCAACCTT
1 CACA-ATGTAAATGCACATAATAGAACTCGAACCTAGACACTTAAGATCCCAAGCACTCAATCTT
* * * * *
109811017 TGTCAACACTACCAAAACGTTACTCATTTACTTATTTATATTTATAAACAAATTGCATATTCGGC
65 TGACAACACTACCAAAACATTACTAATCTACTTATTTATATTTATAAACAAAGTGCATATTCGGC
* * **
109811082 CTAAAATTAACAAATACAAAATTTTCAAACCAAAATGTCCCTCCCTTTCAATCAAATC--ATAT-
130 CTAAAATTAACAAATA-TAAATTTTCAAGCCAAAATAACCCTCCCTTTCAATCAAATCATATATG
* * **** *
109811144 -ATTGCACCATTCTAGTTTGTATCCGACAATTACACATGGTGAGATAAAATCTAGACTAAGAACT
194 CATTGCACCATTCTAGTTTGTATCCAACAATGACACATAACCAGATAAAACCTAGACTAAGAACT
* * * * *
109811208 CAC-ATATAAACGCACACAATAGGACTTGAACCTAGACACTTAAGATCCCAAACCGGCAACCCCT
1 CACAATGTAAATGCACATAATAGAACTCGAACCTAGACACTTAAGATCCC-AA---GC-A---CT
** * * * *
109811272 CAATCTTTGACAATGCTACCAAACCCTTATTTATCTACTTATTTATATTTTATAAACAAAGTGCA
58 CAATCTTTGACAACACTACCAAAACATTACTAATCTACTTATTTATA-TTTATAAACAAAGTGCA
* * * * *
109811337 TATTCGGCCTAAAATTAACAAATATGATTTTTCAAGCTAAAATAACCTTTCCTTTCAATCAAATC
122 TATTCGGCCTAAAATTAACAAATATAAATTTTCAAGCCAAAATAACCCTCCCTTTCAATCAAATC
* ** *
109811402 ATATATTGCAGTTGCACCATTTTCTCA-TTTAGTATCCAATAATGGGACTTAAACCAGAATAAAA
187 ATATA-TGCA-TTGCACCA--TTCT-AGTTT-GTATCCAACAATGACACAT-AACCAG-ATAAAA
109811466 CCTAGACTAAGAACT
244 CCTAGACTAAGAACT
* * *
109811481 CACAGATGTAAATACACATAATAGAACTCAAACCTAAACACTTAAGATCCCAAGCACTCAATCTT
1 CACA-ATGTAAATGCACATAATAGAACTCGAACCTAGACACTTAAGATCCCAAGCACTCAATCTT
* * * ** *
109811546 TGCCAACATTACCAAAACATTACTAATCTACTTATTTATATTTATAAATAAAGAACATATTTGGC
65 TGACAACACTACCAAAACATTACTAATCTACTTATTTATATTTATAAACAAAGTGCATATTCGGC
* * *
109811611 CTAACATTAACAAATATAAGTTTTCAAGCCAAAATACCCCTCCCTTTCAATCAAATCATATACTG
130 CTAAAATTAACAAATATAAATTTTCAAGCCAAAATAACCCTCCCTTTCAATCAAATCATATA-TG
109811676 CAT
194 CAT
109811679 CATTATCCGA
Statistics
Matches: 381, Mismatches: 66, Indels: 38
0.79 0.14 0.08
Matches are distributed among these distances:
253 40 0.10
254 1 0.00
255 3 0.01
257 2 0.01
262 71 0.19
263 40 0.10
264 3 0.01
265 2 0.01
266 80 0.21
267 42 0.11
268 8 0.02
270 8 0.02
271 16 0.04
272 2 0.01
273 23 0.06
274 2 0.01
275 38 0.10
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (258 bp):
CACAATGTAAATGCACATAATAGAACTCGAACCTAGACACTTAAGATCCCAAGCACTCAATCTTT
GACAACACTACCAAAACATTACTAATCTACTTATTTATATTTATAAACAAAGTGCATATTCGGCC
TAAAATTAACAAATATAAATTTTCAAGCCAAAATAACCCTCCCTTTCAATCAAATCATATATGCA
TTGCACCATTCTAGTTTGTATCCAACAATGACACATAACCAGATAAAACCTAGACTAAGAACT
Found at i:109812044 original size:9 final size:9
Alignment explanation
Indices: 109812020--109812053 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
109812010 AATGAAATAG
*
109812020 CATCATCAT
1 CATCACCAT
*
109812029 CACCACCAT
1 CATCACCAT
109812038 CATCACCAT
1 CATCACCAT
109812047 CATCACC
1 CATCACC
109812054 CTCGTCCTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.32, C:0.47, G:0.00, T:0.21
Consensus pattern (9 bp):
CATCACCAT
Found at i:109820178 original size:21 final size:21
Alignment explanation
Indices: 109820154--109820219 Score: 80
Period size: 21 Copynumber: 3.2 Consensus size: 21
109820144 TAATTTTTTT
* *
109820154 ACTTTGAATTCTGAATTTTAA
1 ACTTTGAATCCTAAATTTTAA
*
109820175 ACTTTGAACCCTAAATTTTAA
1 ACTTTGAATCCTAAATTTTAA
* *
109820196 TC-TTGAATCCCAAATTTTAA
1 ACTTTGAATCCTAAATTTTAA
109820216 ACTT
1 ACTT
109820220 AAACATTGAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.35, C:0.17, G:0.06, T:0.42
Consensus pattern (21 bp):
ACTTTGAATCCTAAATTTTAA
Found at i:109820210 original size:20 final size:21
Alignment explanation
Indices: 109820167--109820219 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
109820157 TTGAATTCTG
109820167 AATTTTAAACTTTGAACCCTA
1 AATTTTAAACTTTGAACCCTA
*
109820188 AATTTTAATC-TTGAATCCC-A
1 AATTTTAAACTTTGAA-CCCTA
109820208 AATTTTAAACTT
1 AATTTTAAACTT
109820220 AAACATTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.38, C:0.17, G:0.04, T:0.42
Consensus pattern (21 bp):
AATTTTAAACTTTGAACCCTA
Found at i:109821114 original size:21 final size:21
Alignment explanation
Indices: 109821088--109821137 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
109821078 ATATCTTTAT
109821088 AATTTTTAAAGGATTAAATTA
1 AATTTTTAAAGGATTAAATTA
*
109821109 AATTTTTAAATGATTAAATTA
1 AATTTTTAAAGGATTAAATTA
*
109821130 ATTTTTTA
1 AATTTTTA
109821138 TAATTTTAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (21 bp):
AATTTTTAAAGGATTAAATTA
Found at i:109824382 original size:32 final size:30
Alignment explanation
Indices: 109824334--109824479 Score: 109
Period size: 32 Copynumber: 4.7 Consensus size: 30
109824324 GTTTAAAGAG
*
109824334 AATTCAAAGTTTTTAAAACATTTAGAGGG-CTT
1 AATT-AAAATTTTTAAAA-ATTTAGAGGGTC-T
*
109824366 AATTGAAAATTTTTAAAAATTTTAGAGAGTCT
1 AATT-AAAATTTTTAAAAA-TTTAGAGGGTCT
* * * *
109824398 AATTAAAATTTTCAAAACTTTTACATGGAT-T
1 AATTAAAATTTTTAAAA-ATTTAGA-GGGTCT
* * *
109824429 AATTAAAATTTCTAAAAAAATTA-AGGGTGT
1 AATTAAAATTT-TTAAAAATTTAGAGGGTCT
*
109824459 AATTAAAATTTTCAAAAATTT
1 AATTAAAATTTTTAAAAATTT
109824480 TGAGAGTCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 15
0.76 0.11 0.12
Matches are distributed among these distances:
29 11 0.12
30 13 0.14
31 33 0.35
32 36 0.38
33 1 0.01
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (30 bp):
AATTAAAATTTTTAAAAATTTAGAGGGTCT
Found at i:109824409 original size:31 final size:30
Alignment explanation
Indices: 109824334--109824485 Score: 112
Period size: 31 Copynumber: 4.9 Consensus size: 30
109824324 GTTTAAAGAG
* *
109824334 AATTCAAAGTTTTTAAAACA-TTTAGAGGGCTT
1 AATT-AAAATTTTTAAAA-ATTTTAGAGGTC-T
109824366 AATTGAAAATTTTTAAAAATTTTAGAGAGTCT
1 AATT-AAAATTTTTAAAAATTTTAGAG-GTCT
* * *
109824398 AATTAAAATTTTCAAAACTTTTACATGGAT-T
1 AATTAAAATTTTTAAAAATTTTAGA-GG-TCT
* ** *
109824429 AATTAAAATTTCTAAAAAAATTA-AGGGTGT
1 AATTAAAATTTTTAAAAATTTTAGA-GGTCT
*
109824459 AATTAAAATTTTCAAAAATTTTGAGAG
1 AATTAAAATTTTTAAAAATTTT-AGAG
109824486 TCAAAAAAGC
Statistics
Matches: 97, Mismatches: 16, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
29 1 0.01
30 22 0.23
31 41 0.42
32 31 0.32
33 2 0.02
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (30 bp):
AATTAAAATTTTTAAAAATTTTAGAGGTCT
Found at i:109824473 original size:61 final size:63
Alignment explanation
Indices: 109824364--109824480 Score: 166
Period size: 61 Copynumber: 1.9 Consensus size: 63
109824354 TTTAGAGGGC
* ** *
109824364 TTAATTGAAAATTTTTAAAAATTTTAGAGAGTCTAATTAAAATTTTCAAAACTTTTACATGGA
1 TTAATTGAAAATTTCTAAAAAAATTAGAGAGTCTAATTAAAATTTTCAAAAATTTTACATGGA
* *
109824427 TTAATT-AAAATTTCTAAAAAAATTA-AGGGTGTAATTAAAATTTTCAAAAATTTT
1 TTAATTGAAAATTTCTAAAAAAATTAGAGAGTCTAATTAAAATTTTCAAAAATTTT
109824481 GAGAGTCAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
61 26 0.54
62 16 0.33
63 6 0.12
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (63 bp):
TTAATTGAAAATTTCTAAAAAAATTAGAGAGTCTAATTAAAATTTTCAAAAATTTTACATGGA
Found at i:109824476 original size:30 final size:30
Alignment explanation
Indices: 109824354--109824480 Score: 114
Period size: 31 Copynumber: 4.1 Consensus size: 30
109824344 TTTTAAAACA
* *
109824354 TTTAGAGGGCTTAATTGAAAATTTTTAAAAAT
1 TTTACAGGG-TTAATT-AAAATTTTCAAAAAT
* * *
109824386 TTTAGAGAGTCTAATTAAAATTTTCAAAACT
1 TTTACAGGGT-TAATTAAAATTTTCAAAAAT
* *
109824417 TTTACATGGATTAATTAAAA-TTTCTAAAAAA
1 TTTACA-GGGTTAATTAAAATTTTC-AAAAAT
*
109824448 ATTA-AGGGTGTAATTAAAATTTTCAAAAAT
1 TTTACAGGGT-TAATTAAAATTTTCAAAAAT
109824478 TTT
1 TTT
109824481 GAGAGTCAAA
Statistics
Matches: 78, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
29 3 0.04
30 21 0.27
31 39 0.50
32 15 0.19
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (30 bp):
TTTACAGGGTTAATTAAAATTTTCAAAAAT
Found at i:109829990 original size:104 final size:104
Alignment explanation
Indices: 109829862--109830069 Score: 389
Period size: 104 Copynumber: 2.0 Consensus size: 104
109829852 TTTGGAATAA
109829862 TTTATCTAAGGATGATTCTAAAAATTAAAATTTTTAAGCATCGATATAATTTTGTCACTTCATCA
1 TTTATCTAAGGATGATTCTAAAAATTAAAATTTTTAAGCATCGATATAATTTTGTCACTTCATCA
* *
109829927 AATTTAAAGACATGAAGTTATTATTATACACTCGTCCAT
66 AAGTTAAAGACATAAAGTTATTATTATACACTCGTCCAT
*
109829966 TTTATCTAAGGATGATTTTAAAAATTAAAATTTTTAAGCATCGATATAATTTTGTCACTTCATCA
1 TTTATCTAAGGATGATTCTAAAAATTAAAATTTTTAAGCATCGATATAATTTTGTCACTTCATCA
109830031 AAGTTAAAGACATAAAGTTATTATTATACACTCGTCCAT
66 AAGTTAAAGACATAAAGTTATTATTATACACTCGTCCAT
109830070 AGAGAAATTA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 101 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39
Consensus pattern (104 bp):
TTTATCTAAGGATGATTCTAAAAATTAAAATTTTTAAGCATCGATATAATTTTGTCACTTCATCA
AAGTTAAAGACATAAAGTTATTATTATACACTCGTCCAT
Found at i:109840890 original size:28 final size:28
Alignment explanation
Indices: 109840859--109840933 Score: 80
Period size: 27 Copynumber: 2.6 Consensus size: 28
109840849 TTGATTATTT
*
109840859 TTAATAATATAAAAACTAAATTAATTC-A
1 TTAATAATA-AAAAACTAAATTAATCCAA
* *
109840887 TTAATAATAAAAAATTAATTTAATCCAA
1 TTAATAATAAAAAACTAAATTAATCCAA
109840915 TTCATATAATACAAAAACT
1 TT-A-ATAATA-AAAAACT
109840934 TTTCAAATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
27 14 0.36
28 12 0.31
29 1 0.03
30 6 0.15
31 6 0.15
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (28 bp):
TTAATAATAAAAAACTAAATTAATCCAA
Found at i:109843411 original size:52 final size:52
Alignment explanation
Indices: 109843193--109843538 Score: 425
Period size: 53 Copynumber: 6.7 Consensus size: 52
109843183 AGCCCCACAA
* * *
109843193 TTAATCCTACCTCAATTAGGATTTATATAAGCTTATCTTTTTAGTTTTTCGT
1 TTAATCCCACCTCAATTAGGATTTATATAAGCTTATCTTTTTAATTTTTCAT
* *
109843245 TTAATCCCA-CTCTATTAGTATTTATATAA--TT-T-TTTTTAATTTTTCAT
1 TTAATCCCACCTCAATTAGGATTTATATAAGCTTATCTTTTTAATTTTTCAT
* * * *
109843292 TTAATCCCACCTTAATTATGA-TAATATAAGCTTATCTTTTTATTTTTTTTTCAT
1 TTAATCCCACCTCAATTAGGATTTATATAAGCTTATCTTTTTA---ATTTTTCAT
* * * * *
109843346 TTAATCCCACCTCAATTAGGATTGAAATAAGTTTTTCTTTTTAATTTTCCAT
1 TTAATCCCACCTCAATTAGGATTTATATAAGCTTATCTTTTTAATTTTTCAT
* *
109843398 TTAATCCCACCTCAATTAGGATTTATATAAGTTTATCTTTTTAATTTTTTGAT
1 TTAATCCCACCTCAATTAGGATTTATATAAGCTTATCTTTTTAA-TTTTTCAT
* *
109843451 TTAATCTCACCTCAATTAGGATTTATATAAAGCTTATCCTTTTAATTTTTCAT
1 TTAATCCCACCTCAATTAGGATTTATAT-AAGCTTATCTTTTTAATTTTTCAT
* *
109843504 TTAATCCCACATCAATTAGGATTTATATAAACTTA
1 TTAATCCCACCTCAATTAGGATTTATATAAGCTTA
109843539 CGTAATTTAC
Statistics
Matches: 252, Mismatches: 31, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
47 29 0.12
48 8 0.03
49 4 0.02
50 1 0.00
51 24 0.10
52 62 0.25
53 66 0.26
54 41 0.16
55 17 0.07
ACGTcount: A:0.29, C:0.15, G:0.06, T:0.49
Consensus pattern (52 bp):
TTAATCCCACCTCAATTAGGATTTATATAAGCTTATCTTTTTAATTTTTCAT
Found at i:109844136 original size:4 final size:4
Alignment explanation
Indices: 109844127--109844164 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
109844117 TCATCCAATG
*
109844127 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
109844165 GTATCCACGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:109854170 original size:22 final size:22
Alignment explanation
Indices: 109854145--109854202 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 22
109854135 CATCCATTAT
*
109854145 AAAAGAAGAAGAA-AGTAAGAAA
1 AAAAAAAG-AGAATAGTAAGAAA
* *
109854167 AAAAAAAGGGAATAGTAATAAA
1 AAAAAAAGAGAATAGTAAGAAA
109854189 AAAATTAAAGAGAA
1 AAAA--AAAGAGAA
109854203 ATAATGTAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 3 0.10
22 19 0.66
24 7 0.24
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (22 bp):
AAAAAAAGAGAATAGTAAGAAA
Found at i:109860907 original size:39 final size:38
Alignment explanation
Indices: 109860840--109860933 Score: 100
Period size: 39 Copynumber: 2.4 Consensus size: 38
109860830 ACCAATATGG
*
109860840 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAA-AGTTGA
* * *
109860879 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAAAGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAAAGTTGA
* * *
109860917 TACCCGGTACCTCATCG
1 CACCCAGTGCCTCATCG
109860934 AATCTATCCG
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
38 18 0.39
39 25 0.54
40 3 0.07
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAAAGTTGA
Found at i:109861154 original size:96 final size:96
Alignment explanation
Indices: 109860990--109861182 Score: 377
Period size: 96 Copynumber: 2.0 Consensus size: 96
109860980 AGGTCGAAGT
109860990 ATCCCTGAACACTTCCAATCCTATGGCATGCCAACTATATCCGACTCAGCCCGACTAGTTAATAG
1 ATCCCTGAACACTTCCAATCCTATGGCATGCCAACTATATCCGACTCAGCCCGACTAGTTAATAG
109861055 GGTATTCAATTCACTTTCTCAATCCTCTATC
66 GGTATTCAATTCACTTTCTCAATCCTCTATC
*
109861086 ATCCCTGAACACTTCCAATCCTATGGCATGTCAACTATATCCGACTCAGCCCGACTAGTTAATAG
1 ATCCCTGAACACTTCCAATCCTATGGCATGCCAACTATATCCGACTCAGCCCGACTAGTTAATAG
109861151 GGTATTCAATTCACTTTCTCAATCCTCTATC
66 GGTATTCAATTCACTTTCTCAATCCTCTATC
109861182 A
1 A
109861183 CTTTCAATTC
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 96 1.00
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (96 bp):
ATCCCTGAACACTTCCAATCCTATGGCATGCCAACTATATCCGACTCAGCCCGACTAGTTAATAG
GGTATTCAATTCACTTTCTCAATCCTCTATC
Done.