Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 35 of 343
Found at i:11720854 original size:44 final size:42
Alignment explanation
Indices: 11720792--11720946 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 42
11720782 TGATTTTGAA
** * *
11720792 TAAGACCACATCTGGGACGTTGGCATTG-ATTTGAGATTTACGTG
1 TAAGACCATGTCTGGGACGTTGGCATCGTATAT--GATTT-CGTG
*
11720836 TAAGACCATGTCTAGGACGTTGGCATCGTATATGATTTCGTG
1 TAAGACCATGTCTGGGACGTTGGCATCGTATATGATTTCGTG
* * * * *
11720878 TAAGACCCTGTCTGGGACAG-TGACATCGATATTTGATTACATG
1 TAAGACCATGTCTGGGAC-GTTGGCATCG-TATATGATTTCGTG
* *
11720921 TAAGACC-TCGTTTGGGATGTTGGCAT
1 TAAGACCAT-GTCTGGGACGTTGGCAT
11720947 TGTACGAGTT
Statistics
Matches: 92, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 29 0.32
43 36 0.39
44 24 0.26
45 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACGTTGGCATCGTATATGATTTCGTG
Found at i:11720926 original size:43 final size:42
Alignment explanation
Indices: 11720829--11720927 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
11720819 GATTTGAGAT
*
11720829 TTACGTGTAAGACCATGTCTAGGACGTTGGCATCGTATATGA
1 TTACGTGTAAGACCATGTCTAGGACGTTGACATCGTATATGA
* * * *
11720871 TTTCGTGTAAGACCCTGTCTGGGACAG-TGACATCGATATTTGA
1 TTACGTGTAAGACCATGTCTAGGAC-GTTGACATCG-TATATGA
*
11720914 TTACATGTAAGACC
1 TTACGTGTAAGACC
11720928 TCGTTTGGGA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 29 0.60
43 19 0.40
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTAGGACGTTGACATCGTATATGA
Found at i:11723192 original size:30 final size:30
Alignment explanation
Indices: 11723158--11723216 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
11723148 ACTTATTTTA
*
11723158 TTGTTAATTTTGTTATTATTCTAAAGACAT
1 TTGTTAAATTTGTTATTATTCTAAAGACAT
* *
11723188 TTGTTAAATTTGTTATTATTTTAGAGACA
1 TTGTTAAATTTGTTATTATTCTAAAGACA
11723217 ATTTCTTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.53
Consensus pattern (30 bp):
TTGTTAAATTTGTTATTATTCTAAAGACAT
Found at i:11723373 original size:12 final size:12
Alignment explanation
Indices: 11723343--11723375 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
11723333 TATATTTTTT
11723343 AAAATT-ATATA
1 AAAATTAATATA
11723354 AAAA-TAATATA
1 AAAATTAATATA
11723365 AAAATTAATAT
1 AAAATTAATAT
11723376 GGGCGGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:11723774 original size:13 final size:13
Alignment explanation
Indices: 11723744--11723768 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11723734 ATAAACTGTA
11723744 ATATACATACATG
1 ATATACATACATG
11723757 ATATACATACAT
1 ATATACATACAT
11723769 ATTATAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (13 bp):
ATATACATACATG
Found at i:11723810 original size:26 final size:26
Alignment explanation
Indices: 11723774--11723826 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11723764 TACATATTAT
*
11723774 AAACAGTAATAAACATAACAAACATA
1 AAACAATAATAAACATAACAAACATA
** *
11723800 AAACAATAATATGCATAACATACATA
1 AAACAATAATAAACATAACAAACATA
11723826 A
1 A
11723827 TAGACTGATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.62, C:0.15, G:0.04, T:0.19
Consensus pattern (26 bp):
AAACAATAATAAACATAACAAACATA
Found at i:11728729 original size:20 final size:20
Alignment explanation
Indices: 11728704--11728746 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
11728694 ATTTTTAGTC
11728704 AACTGACCAGCATCTGATTT
1 AACTGACCAGCATCTGATTT
11728724 AACTGACCAGCATCTGATTT
1 AACTGACCAGCATCTGATTT
11728744 AAC
1 AAC
11728747 CTCTATGCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (20 bp):
AACTGACCAGCATCTGATTT
Found at i:11729511 original size:43 final size:44
Alignment explanation
Indices: 11729442--11729534 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 44
11729432 TCCTAATTGG
11729442 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* * *
11729485 GAAAATAGTTCCCTTATTTTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
11729529 -AAAATA
1 GAAAATA
11729535 TTTCTAGAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:11729578 original size:19 final size:18
Alignment explanation
Indices: 11729556--11729595 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
11729546 TGAATAAAAC
11729556 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
11729575 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
11729593 TTA
1 TTA
11729596 AAAATATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:11736848 original size:75 final size:74
Alignment explanation
Indices: 11736629--11736981 Score: 444
Period size: 74 Copynumber: 4.8 Consensus size: 74
11736619 CATATGAACC
* * *
11736629 GAGGCTCAACTCACTTTTCGCAATATGAGTTGATTTTTTTGACAA-CAGAAATTGAAATTACCTC
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTTGAAAAGCAGAAATTGAAAATACCTC
** *
11736693 GGCGTGTCTC
65 AACGTGTCTT
* *
11736703 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAATACCTCA
11736767 ACGTGTCTT
66 ACGTGTCTT
* *
11736776 GAGGCTCAACTCACCTCTCGCAATATTAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-TTGAAAAGCAGAAATTGAAAATACCTC
*
11736841 AATGTGTCTT
65 AACGTGTCTT
* * * * *
11736851 GAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGACAA-CAGAAATTGAAATTATCTC
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTTGAAAAGCAGAAATTGAAAATACCTC
* *
11736915 AGCGTGTCCT
65 AACGTGTCTT
* * * * *
11736925 GAGGCTCAACTCATTTCTTGCAATATGAGCTGA-TTTTGGAAAAGCAGAATTTGAAAA
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAA
11736982 GCATAAATTG
Statistics
Matches: 244, Mismatches: 30, Indels: 11
0.86 0.11 0.04
Matches are distributed among these distances:
72 16 0.07
73 66 0.27
74 85 0.35
75 73 0.30
76 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (74 bp):
GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAATACCTCA
ACGTGTCTT
Found at i:11737595 original size:73 final size:73
Alignment explanation
Indices: 11737451--11737952 Score: 578
Period size: 73 Copynumber: 6.7 Consensus size: 73
11737441 GAGCCAATGT
* * * * * ** * **
11737451 TCAACTCACTTTTTGCAATATGAGTTGATTTTTTTAGAAGTAGAATTTGAAAATACCTCGGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTCAACGTG
*
11737516 CCCTGAGGC
65 TCCTGAGGC
* *
11737525 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGT
11737590 CCTGAGGC
66 CCTGAGGC
11737598 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGAAAATA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC----A--G---A--AATTGAAAATA
*
11737663 CCTCAACGTGTCTTGAGGC
55 CCTCAACGTGTCCTGAGGC
* * *
11737682 TCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTAAAAATACCTCAATGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTT-TTGAAAAACAGAAATTGAAAATACCTCAACGT
*
11737747 GTCTTGAGGC
64 GTCCTGAGGC
* *
11737757 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-ACAACAGAAATTGAAATTACCTCAACGTG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTCAACGTG
11737821 TCCTGAGGC
65 TCCTGAGGC
** ** * * *
11737830 TCAACTCATTTCTCGCAATATGAGTTGAAATTTGGAAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGT
11737895 CCTGAGGC
66 CCTGAGGC
** *
11737903 TCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATT-AAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA
11737953 GGCTTAACTC
Statistics
Matches: 381, Mismatches: 33, Indels: 31
0.86 0.07 0.07
Matches are distributed among these distances:
71 3 0.01
72 19 0.05
73 199 0.52
74 28 0.07
75 60 0.16
77 2 0.01
79 1 0.00
80 1 0.00
82 2 0.01
84 55 0.14
85 3 0.01
86 8 0.02
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (73 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGT
CCTGAGGC
Found at i:11737738 original size:232 final size:231
Alignment explanation
Indices: 11737254--11737879 Score: 746
Period size: 232 Copynumber: 2.7 Consensus size: 231
11737244 ACATAAGTTA
* * * *
11737254 AAAAACAGAAATGAAAAATACCTCAGCTTGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTT
1 AAAAGCAGAAATTAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * * *
11737319 GGTTTTTGCCAAACAGTAATTTGAAAATA-CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCA
66 GATTTTTG-AAAACAG-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
11737383 ATATGAGTTGATTTAGAAAACAGACATAAA---AACAGAAATTGAAAGTGACTCAACACGTGAGC
129 ATATGAGTTGATTTTG-AAA-A-ACATAAATTGAACAGAAATTGAAAATGACTCAACACGTGAGC
* * * * * *
11737445 CAATGTTCAACTCACTTTTTGCAATATGAGTTGATTTTTTT
191 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* * * * * * *
11737486 AGAAGTAGAATTTGAAAATACCTCGGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAGCAGAAATTAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
11737551 GATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
66 GATTTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* * *
11737616 TATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGAAAAT-ACCTC-A-ACGTG-TCTT
130 TATGAGTTGA-TTTTGAAAAACATAAATTGAACAGAAATTGAAAATGA-CTCAACACGTGAGC-C
*
11737677 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTG
192 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TTG
**
11737718 AAAAGCAGAAATTAAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAGCAGAAATTAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * **
11737783 GATTTTTTGACAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCATTTCTCGCAA
66 GA-TTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* * *
11737848 TATGAGTTGAAATTTGGAAAACAGAAATTGAA
130 TATGAGTTG-ATTTTGAAAAACATAAATTGAA
11737880 ATTACCTCAG
Statistics
Matches: 338, Mismatches: 46, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
230 8 0.02
231 47 0.14
232 255 0.75
233 28 0.08
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (231 bp):
AAAAGCAGAAATTAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTGAAAAACATAAATTGAACAGAAATTGAAAATGACTCAACACGTGAGCCAAGG
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
Found at i:11753012 original size:42 final size:43
Alignment explanation
Indices: 11752945--11753039 Score: 140
Period size: 42 Copynumber: 2.3 Consensus size: 43
11752935 CCTAATTGGG
*
11752945 AAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 AAAATAGTTTCCTTATTCTAATAAACTACTAAAACATAAAATA
* * *
11752987 AAAATAGTTTCCTTATTTTAGTAAACTACTAAAAGATAAAATA
1 AAAATAGTTTCCTTATTCTAATAAACTACTAAAACATAAAATA
11753030 AAAATA-TTTC
1 AAAATAGTTTC
11753040 TGAATATGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 41 0.85
43 7 0.15
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.33
Consensus pattern (43 bp):
AAAATAGTTTCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:11753056 original size:43 final size:42
Alignment explanation
Indices: 11752964--11753053 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 42
11752954 CCCTTATTCT
* * *
11752964 AATAAACTACTAAAACATAAAAAAAAATAGTTTCCTTATTTT
1 AATAAACTACTAAAACATAAAAAAAAATAGTTTCCTAATATG
* *
11753006 AGTAAACTACTAAAAGATAAAATAAAAATA-TTT-CTGAATATG
1 AATAAACTACTAAAACATAAAA-AAAAATAGTTTCCT-AATATG
11753048 AATAAA
1 AATAAA
11753054 ACTTATCTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
41 2 0.05
42 31 0.77
43 7 0.17
ACGTcount: A:0.56, C:0.09, G:0.06, T:0.30
Consensus pattern (42 bp):
AATAAACTACTAAAACATAAAAAAAAATAGTTTCCTAATATG
Found at i:11753078 original size:19 final size:18
Alignment explanation
Indices: 11753056--11753095 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
11753046 TGAATAAAAC
11753056 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
11753075 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
11753093 TTA
1 TTA
11753096 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:11760623 original size:46 final size:47
Alignment explanation
Indices: 11760570--11760661 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 47
11760560 TTATCTGTAG
11760570 AGATGTTTAATACAAGCTTGCAAATGTCACTGAATTG-CCATCTCAA
1 AGATGTTTAATACAAGCTTGCAAATGTCACTGAATTGCCCATCTCAA
11760616 AGATGTTTAATACAAGCTTGCAAATGTCACTGAATTGCCCATCTCA
1 AGATGTTTAATACAAGCTTGCAAATGTCACTGAATTGCCCATCTCA
11760662 CTTATCAGTG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 37 0.82
47 8 0.18
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (47 bp):
AGATGTTTAATACAAGCTTGCAAATGTCACTGAATTGCCCATCTCAA
Found at i:11761692 original size:12 final size:12
Alignment explanation
Indices: 11761674--11761705 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
11761664 ATGTAGATAT
11761674 ATATATATACAC
1 ATATATATACAC
*
11761686 GTATATATACAC
1 ATATATATACAC
11761698 ATATATAT
1 ATATATAT
11761706 TATCCTTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (12 bp):
ATATATATACAC
Found at i:11765178 original size:9 final size:9
Alignment explanation
Indices: 11765162--11765222 Score: 95
Period size: 9 Copynumber: 6.8 Consensus size: 9
11765152 GGTATTTTTC
11765162 GGTAATTCG
1 GGTAATTCG
*
11765171 GTTAATTCG
1 GGTAATTCG
*
11765180 GTTAATTCG
1 GGTAATTCG
*
11765189 GTTAATTCG
1 GGTAATTCG
11765198 GGTAATTCG
1 GGTAATTCG
11765207 GGTAATTCG
1 GGTAATTCG
11765216 GGTAATT
1 GGTAATT
11765223 TTTAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.23, C:0.10, G:0.28, T:0.39
Consensus pattern (9 bp):
GGTAATTCG
Found at i:11765400 original size:12 final size:12
Alignment explanation
Indices: 11765383--11765407 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11765373 AGTAATTTCG
11765383 GGTCGGTTAACC
1 GGTCGGTTAACC
11765395 GGTCGGTTAACC
1 GGTCGGTTAACC
11765407 G
1 G
11765408 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:11771221 original size:35 final size:35
Alignment explanation
Indices: 11771182--11771248 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
11771172 GTTTTTAGGG
*
11771182 TTAGGGTTTTGCTAAAATAAGTTAAGGTTTAGTGT
1 TTAGGGTTTTGCTAAAACAAGTTAAGGTTTAGTGT
* * *
11771217 TTAGGTTTTTGTTAAAACAAGTTAGGGTTTAG
1 TTAGGGTTTTGCTAAAACAAGTTAAGGTTTAG
11771249 AATTTTAGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.28, C:0.03, G:0.25, T:0.43
Consensus pattern (35 bp):
TTAGGGTTTTGCTAAAACAAGTTAAGGTTTAGTGT
Found at i:11771371 original size:35 final size:34
Alignment explanation
Indices: 11771307--11771374 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 34
11771297 AAAAAATATT
*
11771307 TAAATTAGGGTTTATGGTTTTTAAATAAATTAAG
1 TAAATTAGGGTTTAAGGTTTTTAAATAAATTAAG
11771341 TAAATTAGGGTTTTTAAGG-TTTTAAATAAATTAA
1 TAAATTAGGG--TTTAAGGTTTTTAAATAAATTAA
11771375 ATTAGGGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
34 10 0.32
35 15 0.48
36 6 0.19
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (34 bp):
TAAATTAGGGTTTAAGGTTTTTAAATAAATTAAG
Found at i:11771387 original size:17 final size:17
Alignment explanation
Indices: 11771367--11771402 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
11771357 AGGTTTTAAA
* *
11771367 TAAATTAAATTAGGGTT
1 TAAAATAAATTAAGGTT
11771384 TAAAATAAATTAAGGTT
1 TAAAATAAATTAAGGTT
11771401 TA
1 TA
11771403 TGGTTTATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (17 bp):
TAAAATAAATTAAGGTT
Found at i:11771409 original size:7 final size:7
Alignment explanation
Indices: 11771397--11771429 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
11771387 AATAAATTAA
11771397 GGTTTAT
1 GGTTTAT
11771404 GGTTTAT
1 GGTTTAT
11771411 GGTTTAT
1 GGTTTAT
*
11771418 AGTTTAT
1 GGTTTAT
11771425 GGTTT
1 GGTTT
11771430 TTAAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58
Consensus pattern (7 bp):
GGTTTAT
Found at i:11771503 original size:28 final size:29
Alignment explanation
Indices: 11771435--11771515 Score: 103
Period size: 28 Copynumber: 2.8 Consensus size: 29
11771425 GGTTTTTAAA
*
11771435 TAAATTAAGTAAATTAGGGTTCT-AGGATTT
1 TAAATTAATTAAATTAGGGTT-TAAGGA-TT
*
11771465 TAAATAAATTAAATTAGGGTTTAAGG-TT
1 TAAATTAATTAAATTAGGGTTTAAGGATT
*
11771493 TAATTTAATTAAATTAGGGTTTA
1 TAAATTAATTAAATTAGGGTTTA
11771516 GTTTTTTTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 23 0.50
29 1 0.02
30 22 0.48
ACGTcount: A:0.40, C:0.01, G:0.17, T:0.42
Consensus pattern (29 bp):
TAAATTAATTAAATTAGGGTTTAAGGATT
Found at i:11771888 original size:126 final size:126
Alignment explanation
Indices: 11771576--11772081 Score: 664
Period size: 126 Copynumber: 4.0 Consensus size: 126
11771566 ATTTTTACCC
* *
11771576 TGAAAAAATAATTTTGAGAAGACATTTATGAACAAATAGTGT-AAAAAAAGCTTTAAGTAGGATG
1 TGAAAAAATAATTTTGAGAAGACATTTATGAACAAATAGTGTCAAAAACA-CTTCAAGTAGGATG
* *
11771640 CACTGTCAGCAAAAATATA-GAAAAAAGCTCCCACGTGGACGTTTTTTTTCTACAGTAGTTCA
65 CACTGTCAGC-AAAATATAGGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCA
* * * *
11771702 TG-AAAAATAATTTTAAGAAGACATTTCTGAATAAATAGTGTCAAAAACGCTTCAAGTAGGATGC
1 TGAAAAAATAATTTTGAGAAGACATTTATGAACAAATAGTGTCAAAAACACTTCAAGTAGGATGC
* * ** *
11771766 ACTGTCAGCAAAA-ATACGGGAAAAAGTTATCACGTGGACGCTCTTTTTCTACAATAGTTCA
66 ACTGTCAGCAAAATATA-GGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCA
* * *
11771827 TGAAAAAATAATTTTGCGAAGACGTTTATGAACAAATAGTGTCAAAAACACTTCAAATAGGATGC
1 TGAAAAAATAATTTTGAGAAGACATTTATGAACAAATAGTGTCAAAAACACTTCAAGTAGGATGC
* * *
11771892 TCTGTCAGCAAAATTATA-GAGAAAAA-CTCCCGCGTGGACGCTCTTTTTCTACAGTAGTTCC
66 ACTGTCAGCAAAA-TATAGGA-AAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCA
* ** * * * *
11771953 TGAAAAAATAATTTTGAAAAGATGTTTCTAAAAAAATAGTGTCAAAAACACTTCAAGCAGGATGC
1 TGAAAAAATAATTTTGAGAAGACATTTATGAACAAATAGTGTCAAAAACACTTCAAGTAGGATGC
* * *
11772018 AATGTCAGCAAAATTTATGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCA
66 ACTGTCAGCAAAATATAGGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCA
11772079 TGA
1 TGA
11772082 TTGGCCTTAG
Statistics
Matches: 330, Mismatches: 41, Indels: 18
0.85 0.11 0.05
Matches are distributed among these distances:
123 3 0.01
124 4 0.01
125 105 0.32
126 210 0.64
127 5 0.02
128 3 0.01
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (126 bp):
TGAAAAAATAATTTTGAGAAGACATTTATGAACAAATAGTGTCAAAAACACTTCAAGTAGGATGC
ACTGTCAGCAAAATATAGGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCA
Found at i:11773016 original size:54 final size:54
Alignment explanation
Indices: 11772934--11773041 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
11772924 GAACCTGAAA
11772934 ACGTTGAAGGGAGTTTAGATTAAGAAGAAGAATATTTGCAATTCAGGGCGCACT
1 ACGTTGAAGGGAGTTTAGATTAAGAAGAAGAATATTTGCAATTCAGGGCGCACT
* *
11772988 ACGTTGAAGGGGGTTTAGATTAAGAAGAAGAATATTTGCGATTCAGGGCGCACT
1 ACGTTGAAGGGAGTTTAGATTAAGAAGAAGAATATTTGCAATTCAGGGCGCACT
11773042 CACCTTTAGC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (54 bp):
ACGTTGAAGGGAGTTTAGATTAAGAAGAAGAATATTTGCAATTCAGGGCGCACT
Found at i:11775658 original size:18 final size:18
Alignment explanation
Indices: 11775632--11775675 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
11775622 GACTGGAAAA
* *
11775632 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
11775650 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
11775668 AGGATACA
1 AGGATACA
11775676 CACTTGGCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.09, G:0.27, T:0.20
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:11781062 original size:7 final size:7
Alignment explanation
Indices: 11781052--11781076 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11781042 TTATATACAT
11781052 AATACTA
1 AATACTA
11781059 AATACTA
1 AATACTA
11781066 AATACTA
1 AATACTA
11781073 AATA
1 AATA
11781077 TGAAATGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:11782025 original size:30 final size:29
Alignment explanation
Indices: 11781991--11782089 Score: 84
Period size: 30 Copynumber: 3.5 Consensus size: 29
11781981 CCGATTAATT
11781991 ATGAAATACAAATTAATTAAAATTACATAA
1 ATGAAATA-AAATTAATTAAAATTACATAA
* * *
11782021 ATGAAAAAAATATTAAATAATATT-C--AA
1 ATGAAATAAA-ATTAATTAAAATTACATAA
*
11782048 A--AATTAAAATTAATTAAAATTACATAA
1 ATGAAATAAAATTAATTAAAATTACATAA
*
11782075 AGGAAA-AAATATTAA
1 ATGAAATAAA-ATTAA
11782090 ATAATATTTA
Statistics
Matches: 54, Mismatches: 8, Indels: 15
0.70 0.10 0.19
Matches are distributed among these distances:
24 11 0.20
25 6 0.11
27 6 0.11
28 3 0.06
29 10 0.19
30 18 0.33
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (29 bp):
ATGAAATAAAATTAATTAAAATTACATAA
Found at i:11782108 original size:53 final size:54
Alignment explanation
Indices: 11782000--11782110 Score: 188
Period size: 53 Copynumber: 2.1 Consensus size: 54
11781990 TATGAAATAC
11782000 AAATTAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAAAAATTA
1 AAATTAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAAAAATTA
* * *
11782054 AAATTAATTAAAATTACATAAA-GGAAAAAATATTAAATAATATTTAAAATTTA
1 AAATTAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAAAAATTA
11782107 AAAT
1 AAAT
11782111 AAATCGTTAC
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 32 0.59
54 22 0.41
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (54 bp):
AAATTAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAAAAATTA
Found at i:11783230 original size:17 final size:16
Alignment explanation
Indices: 11783195--11783240 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 16
11783185 ATAGTAGTAC
11783195 ATTATATATTACTTATT
1 ATTATATATTA-TTATT
*
11783212 ATTATATATTATT-GT
1 ATTATATATTATTATT
11783227 -TTATATATTATTAT
1 ATTATATATTATTAT
11783241 ACTAGTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 12 0.46
15 1 0.04
16 2 0.08
17 11 0.42
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (16 bp):
ATTATATATTATTATT
Found at i:11783316 original size:242 final size:238
Alignment explanation
Indices: 11782600--11783398 Score: 661
Period size: 249 Copynumber: 3.3 Consensus size: 238
11782590 ATCATATAGT
* * *
11782600 ATATAATATATTAACAGTTTACATATATGCATCAATGATTAAACATTATAATATCATGTAATACT
1 ATATAATATATTAATAGTTTATATAT-TGCATTAATGATTAAACATTATAATATCATGTAATAC-
* * * * *
11782665 ATATCTTTTATTGTAATCCATAATATAATAATAG-T--T-ATA-TA-TA-ATATTAGTACATT-A
64 -TAT-TATTATTATAATCTATAATATAATAAGAGTTAATAATAGTAGTACATATTA-TATATTAA
* ** * *
11782722 TATATTA-ATTATTATTGTTTATTATTATACTG-GTTGAAATATGTTCTAAGTCTCTATA-TTTT
126 T-TATTATA-TATTATTGTTTATTATTATAC-GAGTTAAAATATACTCTAAATCCCTATACTTTT
* * * * * * * * * *
11782784 TCATACATTTGAAAGTTAGCTC-TCTTATTTTATTATATAATATTATATCATATCATATAGT
188 T-GTACATTAGAAACTTAG-TCACCCTACTATACTATATAAT-GT-TATCATA-C------C
* *
11782845 ATATAATATATTAATACTTTATATA-TGCATTAATGATTAAACATTATAATATCATTTAATACTA
1 ATATAATATATTAATAGTTTATATATTGCATTAATGATTAAACATTATAATATCATGTAATACTA
* *
11782909 TTTATTTTATTATAATTTATAATATAATAATAGTTAATAATAGTAGTACATATTATATATTAATT
66 -TTA--TTATTATAATCTATAATATAATAAGAGTTAATAATAGTAGTACATATTATATATTAATT
* * * ** *
11782974 ATTATATATTATTGTTTGTTATTATACGGGTTTAAATATGTTCTAAATCCCTATACTTTTTGTAT
128 ATTATATATTATTGTTTATTATTATACGAGTTAAAATATACTCTAAATCCCTATACTTTTTGTAC
*
11783039 ATTAGAAAGTTAGTCACCCTACTATACTATATAATG-T-T-ATACC
193 ATTAGAAACTTAGTCACCCTACTATACTATATAATGTTATCATACC
* * * *
11783082 ATATCATATATTAATAGTTTATATATGTGCATAAATGATTAAACATTGTAATGTCATGTAATACT
1 ATATAATATATTAATAGTTTATATAT-TGCATTAATGATTAAACATTATAATATCATGTAATACT
*
11783147 A-TA-TATTATAATCTATATTATAATAAGAGTTATACATAATAGTAGTAC--ATTATATATTACT
65 ATTATTATTATAATCTATAATATAATAAGAG-T-TA-ATAATAGTAGTACATATTATATATTA--
* *
11783208 TATTATTATATATTATTGTTTATATATTATTATACTAGTTAAAATATACTCTAAGTCCCTATACT
125 -ATTATTATATATTATTG--T-T-TATTATTATACGAGTTAAAATATACTCTAAATCCCTATACT
* * *
11783273 TTTTGTACATTTA-AAACTTAG-CCCTCCTACTATATTATATAATGTTACATCATATC
185 TTTTGTACA-TTAGAAACTTAGTCAC-CCTACTATACTATATAATGTT--ATCATACC
* *
11783329 ATATAATATATTAATAGTTTATATATATATGCATTGATGATTAAACATTATAACATCATGTAATA
1 ATATAATATATTAATAG-TT-TATATAT-TGCATTAATGATTAAACATTATAATATCATGTAATA
*
11783394 TTATT
63 CTATT
11783399 TATATATGTA
Statistics
Matches: 464, Mismatches: 53, Indels: 69
0.79 0.09 0.12
Matches are distributed among these distances:
234 23 0.05
235 12 0.03
236 2 0.00
237 38 0.08
238 17 0.04
239 35 0.08
240 1 0.00
241 6 0.01
242 68 0.15
243 64 0.14
244 4 0.01
245 23 0.05
246 3 0.01
247 23 0.05
248 7 0.02
249 123 0.27
250 15 0.03
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (238 bp):
ATATAATATATTAATAGTTTATATATTGCATTAATGATTAAACATTATAATATCATGTAATACTA
TTATTATTATAATCTATAATATAATAAGAGTTAATAATAGTAGTACATATTATATATTAATTATT
ATATATTATTGTTTATTATTATACGAGTTAAAATATACTCTAAATCCCTATACTTTTTGTACATT
AGAAACTTAGTCACCCTACTATACTATATAATGTTATCATACC
Found at i:11804190 original size:23 final size:23
Alignment explanation
Indices: 11804164--11804251 Score: 60
Period size: 23 Copynumber: 3.9 Consensus size: 23
11804154 TCAATTGTGT
*
11804164 TAATCA-TACTTAAGCTTAATTTA
1 TAATCATTAATTAAG-TTAATTTA
*
11804187 TAATGATTAATTAAGTTAA-TTA
1 TAATCATTAATTAAGTTAATTTA
** *
11804209 T--T-ATTAATTATAAACTAATCTA
1 TAATCATTAA-T-TAAGTTAATTTA
*
11804231 TAATGATTAATTAAGTTAATT
1 TAATCATTAATTAAGTTAATT
11804252 ATTATTAATT
Statistics
Matches: 50, Mismatches: 8, Indels: 14
0.69 0.11 0.19
Matches are distributed among these distances:
19 5 0.10
20 2 0.04
21 6 0.12
22 7 0.14
23 16 0.32
24 9 0.18
25 5 0.10
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (23 bp):
TAATCATTAATTAAGTTAATTTA
Found at i:11804216 original size:19 final size:19
Alignment explanation
Indices: 11804192--11804262 Score: 70
Period size: 19 Copynumber: 3.4 Consensus size: 19
11804182 ATTTATAATG
11804192 ATTAATTAAGTTAATTATT
1 ATTAATTAAGTTAATTATT
**
11804211 ATTAATTATAAACTAATCTATAAT
1 ATTAA-T-TAAGTTAAT-TAT--T
11804235 GATTAATTAAGTTAATTATT
1 -ATTAATTAAGTTAATTATT
11804255 ATTAATTA
1 ATTAATTA
11804263 TAAACTAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
19 13 0.31
20 2 0.05
21 7 0.17
22 6 0.14
23 7 0.17
24 2 0.05
25 5 0.12
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (19 bp):
ATTAATTAAGTTAATTATT
Found at i:11804248 original size:44 final size:44
Alignment explanation
Indices: 11804180--11804274 Score: 181
Period size: 44 Copynumber: 2.2 Consensus size: 44
11804170 TACTTAAGCT
*
11804180 TAATTTATAATGATTAATTAAGTTAATTATTATTAATTATAAAC
1 TAATCTATAATGATTAATTAAGTTAATTATTATTAATTATAAAC
11804224 TAATCTATAATGATTAATTAAGTTAATTATTATTAATTATAAAC
1 TAATCTATAATGATTAATTAAGTTAATTATTATTAATTATAAAC
11804268 TAATCTA
1 TAATCTA
11804275 ACTGTAAAAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (44 bp):
TAATCTATAATGATTAATTAAGTTAATTATTATTAATTATAAAC
Found at i:11808385 original size:16 final size:18
Alignment explanation
Indices: 11808357--11808393 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
11808347 CATCCAACAT
11808357 AATAAATTTTAAA-TAAA
1 AATAAATTTTAAATTAAA
11808374 AATAAA-TTTAAATTAAA
1 AATAAATTTTAAATTAAA
11808391 AAT
1 AAT
11808394 CCAAACATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AATAAATTTTAAATTAAA
Found at i:11810983 original size:46 final size:45
Alignment explanation
Indices: 11810930--11811103 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
11810920 TTTGGGCATT
11810930 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTC
*** * *
11810976 CGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTC
* * *
11811023 CGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTC
* *
11811069 CGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
11811104 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTC
Found at i:11811083 original size:93 final size:93
Alignment explanation
Indices: 11810924--11811095 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
11810914 AGGATATTTG
* * *
11810924 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
11810989 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
11811017 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
11811082 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
11811096 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:11813466 original size:13 final size:11
Alignment explanation
Indices: 11813438--11813480 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
11813428 AGTTAAATAT
11813438 TATTTTATTAA
1 TATTTTATTAA
11813449 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
11813462 TA-TTTATTAT
1 TATTTTATTAA
11813472 TATTTTATT
1 TATTTTATT
11813481 TAAAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:11817109 original size:14 final size:11
Alignment explanation
Indices: 11817073--11817104 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
11817063 CTTTATATAC
11817073 TAATAAAATAT
1 TAATAAAATAT
11817084 TAATAAAATAT
1 TAATAAAATAT
11817095 TAATAAAATA
1 TAATAAAATA
11817105 ATATTTATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:11823531 original size:25 final size:25
Alignment explanation
Indices: 11823503--11823555 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
11823493 AAAATATTTG
* *
11823503 AAATGTTTTAATATAATTTAAAATA
1 AAATATTTTAACATAATTTAAAATA
*
11823528 AAATATTTTAACATAATTTAATATA
1 AAATATTTTAACATAATTTAAAATA
11823553 AAA
1 AAA
11823556 ATAATTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (25 bp):
AAATATTTTAACATAATTTAAAATA
Found at i:11823623 original size:42 final size:43
Alignment explanation
Indices: 11823558--11823648 Score: 148
Period size: 42 Copynumber: 2.1 Consensus size: 43
11823548 ATATAAAAAT
*
11823558 AATTATATTAAAAATATTATTAAATTATATATTATTTTTATTA
1 AATTATATTAAAAATATGATTAAATTATATATTATTTTTATTA
* *
11823601 AATTATATT-AAAATATGATTAAATTATTTATTATTTTTATTT
1 AATTATATTAAAAATATGATTAAATTATATATTATTTTTATTA
11823643 AATTAT
1 AATTAT
11823649 TTTTAATAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 36 0.80
43 9 0.20
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (43 bp):
AATTATATTAAAAATATGATTAAATTATATATTATTTTTATTA
Found at i:11823649 original size:14 final size:13
Alignment explanation
Indices: 11823624--11823653 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
11823614 TATGATTAAA
11823624 TTATTTATTATTT
1 TTATTTATTATTT
11823637 TTATTTAATTATTT
1 TTATTT-ATTATTT
11823651 TTA
1 TTA
11823654 ATAACAATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TTATTTATTATTT
Found at i:11823649 original size:21 final size:21
Alignment explanation
Indices: 11823574--11823650 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
11823564 ATTAAAAATA
*
11823574 TTATTAAATTATATATTATTT
1 TTATTAAATTATTTATTATTT
* * *
11823595 TTATTAAATTATATTA-AAATA
1 TTATTAAATTAT-TTATTATTT
*
11823616 TGATTAAATTATTTATTATTT
1 TTATTAAATTATTTATTATTT
*
11823637 TTATTTAATTATTT
1 TTATTAAATTATTT
11823651 TTAATAACAA
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
20 3 0.07
21 39 0.89
22 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (21 bp):
TTATTAAATTATTTATTATTT
Found at i:11823869 original size:16 final size:16
Alignment explanation
Indices: 11823848--11823880 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
11823838 TACTGACTAT
11823848 AACTCTATTACATTAC
1 AACTCTATTACATTAC
*
11823864 AACTCTATTCCATTAC
1 AACTCTATTACATTAC
11823880 A
1 A
11823881 GCGAACCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.36
Consensus pattern (16 bp):
AACTCTATTACATTAC
Found at i:11825280 original size:27 final size:27
Alignment explanation
Indices: 11825241--11825298 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
11825231 GATGAGACTC
*
11825241 TTTTTATATTAAAAT-TTATTTTTTTTA
1 TTTTTATAATAAAATATTA-TTTTTTTA
*
11825268 TTTTTTTAATAAAATATTATTTTTTTA
1 TTTTTATAATAAAATATTATTTTTTTA
11825295 TTTT
1 TTTT
11825299 CGGATCAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (27 bp):
TTTTTATAATAAAATATTATTTTTTTA
Found at i:11825532 original size:16 final size:16
Alignment explanation
Indices: 11825492--11825532 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
11825482 AAATAAAAAA
*
11825492 TAAAATAAAATTACAT
1 TAAAAAAAAATTACAT
* *
11825508 TATATAAAAATTACAT
1 TAAAAAAAAATTACAT
11825524 TAAAAAAAA
1 TAAAAAAAA
11825533 TACAAAACAC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (16 bp):
TAAAAAAAAATTACAT
Found at i:11826279 original size:29 final size:28
Alignment explanation
Indices: 11826245--11826311 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
11826235 ATTTAAATAT
*
11826245 TTTTAATAAAA-ATAAAAAATAATATTTTA
1 TTTTAA-AAAACAAAAAAAAT-ATATTTTA
11826274 TTTTAAAAAACAAAAAAAATATATTTTA
1 TTTTAAAAAACAAAAAAAATATATTTTA
* *
11826302 ATATAAAAAA
1 TTTTAAAAAA
11826312 AAGTTGCACT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 20 0.59
29 14 0.41
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (28 bp):
TTTTAAAAAACAAAAAAAATATATTTTA
Found at i:11828554 original size:20 final size:21
Alignment explanation
Indices: 11828516--11828556 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
11828506 ATTAATTTTT
**
11828516 TAAAATTTTTAAATTTTAAAA
1 TAAAATTTTTAAAAATTAAAA
11828537 TAAAA-TTTTAAAAATTAAAA
1 TAAAATTTTTAAAAATTAAAA
11828557 ATCACTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TAAAATTTTTAAAAATTAAAA
Found at i:11828557 original size:21 final size:21
Alignment explanation
Indices: 11828516--11828558 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
11828506 ATTAATTTTT
* * *
11828516 TAAAATTTTTAAATTTTAAAA
1 TAAAATTTTAAAAATTAAAAA
11828537 TAAAATTTTAAAAATTAAAAA
1 TAAAATTTTAAAAATTAAAAA
11828558 T
1 T
11828559 CACTAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TAAAATTTTAAAAATTAAAAA
Found at i:11828903 original size:17 final size:18
Alignment explanation
Indices: 11828882--11828928 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
11828872 TTAATTGAGT
11828882 GAAGAAATTAAAAAAAGA
1 GAAGAAATTAAAAAAAGA
* *
11828900 -AAGAAA-TAAAGAGAGA
1 GAAGAAATTAAAAAAAGA
11828916 GAAGAAAGTTAAA
1 GAAGAAA-TTAAA
11828929 GTAAAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
16 8 0.33
17 12 0.50
19 4 0.17
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.11
Consensus pattern (18 bp):
GAAGAAATTAAAAAAAGA
Found at i:11832356 original size:19 final size:19
Alignment explanation
Indices: 11832332--11832375 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
11832322 TATATAGTGC
* * *
11832332 AAAAATATAAAACATATAA
1 AAAAATAAAAAAAAAATAA
11832351 AAAAATAAAAAAAAAATAA
1 AAAAATAAAAAAAAAATAA
11832370 AAAAAT
1 AAAAAT
11832376 CAAATTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (19 bp):
AAAAATAAAAAAAAAATAA
Found at i:11832362 original size:9 final size:10
Alignment explanation
Indices: 11832332--11832375 Score: 56
Period size: 9 Copynumber: 4.6 Consensus size: 10
11832322 TATATAGTGC
11832332 AAAAATAT-A
1 AAAAATATAA
*
11832341 AAACATATAA
1 AAAAATATAA
11832351 AAAAATA-AA
1 AAAAATATAA
*
11832360 AAAAAAATAA
1 AAAAATATAA
11832370 AAAAAT
1 AAAAAT
11832376 CAAATTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
9 15 0.52
10 14 0.48
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAATATAA
Found at i:11832363 original size:11 final size:11
Alignment explanation
Indices: 11832349--11832374 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
11832339 TAAAACATAT
11832349 AAAAAAATAAA
1 AAAAAAATAAA
11832360 AAAAAAATAAA
1 AAAAAAATAAA
11832371 AAAA
1 AAAA
11832375 TCAAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:11832495 original size:16 final size:16
Alignment explanation
Indices: 11832476--11832511 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
11832466 CTTTTCCCCC
11832476 CTCTCCTTCCTCCCTT
1 CTCTCCTTCCTCCCTT
* *
11832492 CTCTCTTTTCTCCCTT
1 CTCTCCTTCCTCCCTT
11832508 CTCT
1 CTCT
11832512 TTCTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (16 bp):
CTCTCCTTCCTCCCTT
Found at i:11833056 original size:14 final size:14
Alignment explanation
Indices: 11833037--11833067 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
11833027 TATCCACTTT
11833037 TTATATTATTATTA
1 TTATATTATTATTA
*
11833051 TTATATTATTTTTA
1 TTATATTATTATTA
11833065 TTA
1 TTA
11833068 CTATGGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTATATTATTATTA
Found at i:11846064 original size:73 final size:69
Alignment explanation
Indices: 11845934--11846240 Score: 283
Period size: 73 Copynumber: 4.3 Consensus size: 69
11845924 TTTGGGTACT
* * * * ** *
11845934 CTGAGGTATCTTTAATTCATGTTTTCAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCT
1 CTGAGGTATTTTTAATTTATG-TTT---AAAAAT-TACTCATATTGCGAGAGGTGAGTCGAGCCT
11845999 CAGGTCACACG
61 CAGGT--CACG
* *
11846010 CTGAGGTATTTTTAGTTTATGTTTCAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAG
1 CTGAGGTATTTTTAATTTATGTTT-AAAAATT-ACTCATATTGCGAGAGGTGAGTCGAGCCTCAG
11846075 GTCACG
64 GTCACG
* * * *
11846081 CTGAGGTATTTTAAATCCTTTTGTTTAAAAAATCAGCTCATATTGCGAGGGGTGAGTCGAGCCTC
1 CTGAGGTATTTTTAAT--TTATGTTT-AAAAATTA-CTCATATTGCGAGAGGTGAGTCGAGCCTC
* *
11846146 GGGGCACG
62 AGGTCACG
* * * *
11846154 CTGAGGTATTTTTAGTTTATGTTTAGAAAA-TACTCATATTGCGAGAGGTGAGTCAAGCTTCGGG
1 CTGAGGTATTTTTAATTTATGTTTA-AAAATTACTCATATTGCGAGAGGTGAGTCGAGCCTCAGG
*
11846218 GCACG
65 TCACG
* *
11846223 CTGAGGTCTTTTCAATTT
1 CTGAGGTATTTTTAATTT
11846241 CTGCTTTTCA
Statistics
Matches: 197, Mismatches: 29, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
69 49 0.25
70 2 0.01
71 29 0.15
72 1 0.01
73 95 0.48
75 3 0.02
76 18 0.09
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (69 bp):
CTGAGGTATTTTTAATTTATGTTTAAAAATTACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGT
CACG
Found at i:11846217 original size:69 final size:69
Alignment explanation
Indices: 11846006--11846234 Score: 298
Period size: 73 Copynumber: 3.2 Consensus size: 69
11845996 CCTCAGGTCA
*
11846006 CACGCTGAGGTATTTTTAGTTTATGTTTCAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCC
1 CACGCTGAGGTATTTTTAGTTTATGTTT-AAAAA-TCACTCATATTGCGAGAGGTGAGTCAAGCC
* *
11846071 TCAGGT
64 TCGGGG
* * * * *
11846077 CACGCTGAGGTATTTTAAATCCTTTTGTTTAAAAAATCAGCTCATATTGCGAGGGGTGAGTCGAG
1 CACGCTGAGGTATTTTTAGT--TTATGTTT-AAAAATCA-CTCATATTGCGAGAGGTGAGTCAAG
11846142 CCTCGGGG
62 CCTCGGGG
*
11846150 CACGCTGAGGTATTTTTAGTTTATGTTTAGAAAAT-ACTCATATTGCGAGAGGTGAGTCAAGCTT
1 CACGCTGAGGTATTTTTAGTTTATGTTTA-AAAATCACTCATATTGCGAGAGGTGAGTCAAGCCT
11846214 CGGGG
65 CGGGG
*
11846219 CACGCTGAGGTCTTTT
1 CACGCTGAGGTATTTT
11846235 CAATTTCTGC
Statistics
Matches: 138, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
69 45 0.33
70 2 0.01
71 30 0.22
72 2 0.01
73 59 0.43
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (69 bp):
CACGCTGAGGTATTTTTAGTTTATGTTTAAAAATCACTCATATTGCGAGAGGTGAGTCAAGCCTC
GGGG
Found at i:11846226 original size:142 final size:146
Alignment explanation
Indices: 11845961--11846234 Score: 396
Period size: 142 Copynumber: 1.9 Consensus size: 146
11845951 CATGTTTTCA
* *
11845961 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAGT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTCGAGCCTCAGGTCACACGCTGAGGTATTTTTAGT
*
11846026 TTATGTTTCAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATT
66 TTATGTTTCAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGGCACGCTGAGGTATT
11846091 TTAAATCCTTTTGTTT
131 TTAAATCCTTTTGTTT
* *** **
11846107 AAAAAATCAGCTCATATTGCGAGGGGTGAGTCGAGCCTC-GG-GGCACGCTGAGGTATTTTTAGT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTCGAGCCTCAGGTCACACGCTGAGGTATTTTTAGT
* * *
11846170 TTATGTTT-AGAAAA-T-ACTCATATTGCGAGAGGTGAGTCAAGCTTCGGGGCACGCTGAGGTCT
66 TTATGTTTCA-AAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGGCACGCTGAGGTAT
11846232 TTT
130 TTT
11846235 CAATTTCTGC
Statistics
Matches: 115, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
142 46 0.40
143 2 0.02
144 32 0.28
145 2 0.02
146 33 0.29
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (146 bp):
AAAAAATCAACTCATATTGCGAGAAATGAGTCGAGCCTCAGGTCACACGCTGAGGTATTTTTAGT
TTATGTTTCAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGGCACGCTGAGGTATT
TTAAATCCTTTTGTTT
Found at i:11846249 original size:14 final size:14
Alignment explanation
Indices: 11846230--11846265 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
11846220 ACGCTGAGGT
* *
11846230 CTTTTCAATTTCTG
1 CTTTTCAATTCCTA
11846244 CTTTTCAATTCCTA
1 CTTTTCAATTCCTA
11846258 CTTTTCAA
1 CTTTTCAA
11846266 AAATCAGCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.19, C:0.25, G:0.03, T:0.53
Consensus pattern (14 bp):
CTTTTCAATTCCTA
Found at i:11846334 original size:13 final size:13
Alignment explanation
Indices: 11846316--11846340 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11846306 CACGCTGAGG
11846316 TATTTTCAATTTC
1 TATTTTCAATTTC
11846329 TATTTTCAATTT
1 TATTTTCAATTT
11846341 ATGTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:11846382 original size:86 final size:86
Alignment explanation
Indices: 11846185--11846382 Score: 247
Period size: 87 Copynumber: 2.3 Consensus size: 86
11846175 TTTAGAAAAT
** * * * *
11846185 ACTCATATTGCGAGAGGTGAGTCAAGCTTCGGGGCACGCTGAGGTCTTTTCAATTTCTGCTTTTC
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGATTTTC
*
11846250 AATTCCTACTTTTCAAAAATCA
66 AATT-CTACTTTTCAAAAACCA
* *
11846272 GCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT-ATTTTC
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGATTTTC
* *
11846336 AATT-TATGTTGTTCAAGAACCA
66 AATTCTA-CTT-TTCAAAAACCA
*
11846358 ACTCATATTGCGAGAGGTGGGTTGA
1 ACTCATATTGCGAGAGGTGAGTTGA
11846383 ACCTTTTAAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
84 2 0.02
85 2 0.02
86 41 0.43
87 51 0.53
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (86 bp):
ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGATTTTC
AATTCTACTTTTCAAAAACCA
Found at i:11846508 original size:127 final size:127
Alignment explanation
Indices: 11846332--11846625 Score: 516
Period size: 127 Copynumber: 2.3 Consensus size: 127
11846322 CAATTTCTAT
* ** * *
11846332 TTTCAATTTATGTTGTTCAAGAACCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
1 TTTCAATTTCTGTTGTAAAAAAAACAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
11846397 ACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
66 ACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
11846459 TTTCAATTTCTGTTGTAAAAAAAACAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
1 TTTCAATTTCTGTTGTAAAAAAAACAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
11846524 ACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
66 ACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
* *
11846586 TTTCAATTTCTGTTCTCAAAAAAATCAACTCATATTGCGA
1 TTTCAATTTCTGTTGT-AAAAAAAACAACTCATATTGCGA
11846626 AAAGTGAGTT
Statistics
Matches: 159, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
127 137 0.86
128 22 0.14
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Consensus pattern (127 bp):
TTTCAATTTCTGTTGTAAAAAAAACAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
ACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
Found at i:11847805 original size:17 final size:17
Alignment explanation
Indices: 11847767--11847804 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
11847757 TATATAGTGC
*
11847767 AAAAATATAAAACATAT
1 AAAAATATAAAAAATAT
11847784 AAAAATATAAAAAA-AT
1 AAAAATATAAAAAATAT
11847800 AAAAA
1 AAAAA
11847805 AAAATCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAAATATAAAAAATAT
Found at i:11847806 original size:8 final size:8
Alignment explanation
Indices: 11847767--11847804 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
11847757 TATATAGTGC
11847767 AAAAATAT
1 AAAAATAT
11847775 AAAACATAT
1 AAAA-ATAT
11847784 AAAAATAT
1 AAAAATAT
*
11847792 AAAAAAAT
1 AAAAATAT
11847800 AAAAA
1 AAAAA
11847805 AAAATCAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
8 20 0.71
9 8 0.29
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (8 bp):
AAAAATAT
Found at i:11862312 original size:23 final size:23
Alignment explanation
Indices: 11862276--11862334 Score: 100
Period size: 23 Copynumber: 2.5 Consensus size: 23
11862266 GGGTTTAGGG
*
11862276 TTTTAGATAGTTCAGCTCTAGCCT
1 TTTTAAATA-TTCAGCTCTAGCCT
11862300 TTTTAAATATTCAGCTCTAGCCT
1 TTTTAAATATTCAGCTCTAGCCT
11862323 TTTTAAATATTC
1 TTTTAAATATTC
11862335 GCGGAGTTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 26 0.76
24 8 0.24
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (23 bp):
TTTTAAATATTCAGCTCTAGCCT
Found at i:11880938 original size:28 final size:28
Alignment explanation
Indices: 11880898--11880956 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
11880888 TGTATGAAAT
11880898 ATAAATTTTAAATATTTTTAAGTAATAA
1 ATAAATTTTAAATATTTTTAAGTAATAA
11880926 ATAAATTTTAAATATTTTTAAGTAATAA
1 ATAAATTTTAAATATTTTTAAGTAATAA
11880954 ATA
1 ATA
11880957 TTAATTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (28 bp):
ATAAATTTTAAATATTTTTAAGTAATAA
Found at i:11880952 original size:24 final size:26
Alignment explanation
Indices: 11880898--11880966 Score: 88
Period size: 28 Copynumber: 2.7 Consensus size: 26
11880888 TGTATGAAAT
11880898 ATAAATTTTAAATATTTTTAAGTAATAA
1 ATAAATTTTAAATATTTTTAAG--ATAA
11880926 ATAAATTTTAAATATTTTTAAG-T-A
1 ATAAATTTTAAATATTTTTAAGATAA
* *
11880950 ATAAATATTAATTATTT
1 ATAAATTTTAAATATTT
11880967 ATAAAATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 16 0.41
25 1 0.03
28 22 0.56
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (26 bp):
ATAAATTTTAAATATTTTTAAGATAA
Found at i:11882670 original size:57 final size:57
Alignment explanation
Indices: 11882609--11882735 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 57
11882599 TTTTTTCAGG
* * **
11882609 TCATTTTCATTTTGGAGAAAATCACATTCATTTTCAAATGA-TTCTATTTCTCCATTT
1 TCATTTTCATTTTGGAGAAAACCACAATCATTTGAAAATGATTTC-ATTTCTCCATTT
* * *
11882666 TCATTTTTATTTTGGAGAAAACCATAATCATTTGAAAATGATTTCATTTCTCTATTT
1 TCATTTTCATTTTGGAGAAAACCACAATCATTTGAAAATGATTTCATTTCTCCATTT
11882723 TCATTTTCATTTT
1 TCATTTTCATTTT
11882736 TTATTTTCGA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 58 0.95
58 3 0.05
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.50
Consensus pattern (57 bp):
TCATTTTCATTTTGGAGAAAACCACAATCATTTGAAAATGATTTCATTTCTCCATTT
Found at i:11888439 original size:31 final size:29
Alignment explanation
Indices: 11888404--11888480 Score: 102
Period size: 31 Copynumber: 2.6 Consensus size: 29
11888394 AAATTATTCA
11888404 AAAGTTTTTATTTAAGTCATTGAACTATTTT
1 AAAGTTTTTATTTAAGTCATTGAAC--TTTT
* *
11888435 AAAGTTTTTATTTAAATCATTGAGCTTTT
1 AAAGTTTTTATTTAAGTCATTGAACTTTT
11888464 AAATGTTTTT-TTTAAGT
1 AAA-GTTTTTATTTAAGT
11888481 TTCGCCGGCA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
29 13 0.31
30 6 0.14
31 23 0.55
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.53
Consensus pattern (29 bp):
AAAGTTTTTATTTAAGTCATTGAACTTTT
Found at i:11897410 original size:422 final size:422
Alignment explanation
Indices: 11896626--11897466 Score: 1540
Period size: 422 Copynumber: 2.0 Consensus size: 422
11896616 ACATTTTAGG
11896626 CTGCATAATTGATAAATTGCTCTGAACCTTCCCTACTCTCTCTGCAGAAAGACTTCTTGTATTAA
1 CTGCATAATTGATAAATTGCTCTGAACCTTCCCTACTCTCTCTGCAGAAAGACTTCTTGTATTAA
* * *
11896691 CTGTCTGAGTAGGCAAGTTTAATTTGTTGCCTTAAGCTACATTCTAATTGTACAAAAAAGTTGAT
66 CTGCCTGAGTAGACAAGTTTAATTTGTTGCCTTAAGCTACATTCTAATTGTACAAAAAAGGTGAT
*
11896756 GTTGAACTAGTTGAAATTGATGTTTCCATACCATGATCAAATGGTGCTTTATCTTCATTGTTGGT
131 GTTGAACTAGTTGAAATTGATGTTTCCATACCATGATCAAATGGTGCTTTAACTTCATTGTTGGT
11896821 TGCTTGATATTACGAGATGGGTATTTTTGAGCCCCTTCAAGCAACTCCCAGTTTGAAAATCATCA
196 TGCTTGATATTACGAGATGGGTATTTTTGAGCCCCTTCAAGCAACTCCCAGTTTGAAAATCATCA
*
11896886 CCTGCCCATGAAAATTCTGTAAGAAAAATTCTTTCATTATGTACTATTATTTATTTTTCTTTTTT
261 CCTGCCCATGAAAATTCTGTAAGAAAAATTCTTGCATTATGTACTATTATTTATTTTTCTTTTTT
11896951 TATGGATTCTGTTTGAGAAAAGATCATTGTTGTGTTTAACGGGTTGGTTTTCCCTGATTATGTAC
326 TATGGATTCTGTTTGAGAAAAGATCATTGTTGTGTTTAACGGGTTGGTTTTCCCTGATTATGTAC
11897016 AGTGCATGAGAATCCATCATGCAGGTAACTGC
391 AGTGCATGAGAATCCATCATGCAGGTAACTGC
*
11897048 CTGCATAATTGATAAATTGCTCTGGACCTTCCCTACTCTCTCTGCAGAAAGACTTCTTGTATTAA
1 CTGCATAATTGATAAATTGCTCTGAACCTTCCCTACTCTCTCTGCAGAAAGACTTCTTGTATTAA
* *
11897113 CTGCCTGAGTAGACAAGTTTAATTTGTTGCCTTAAGCTACATTCTAATTGTATAAACAAGGTG-T
66 CTGCCTGAGTAGACAAGTTTAATTTGTTGCCTTAAGCTACATTCTAATTGTACAAAAAAGGTGAT
* * * *
11897177 GTTGAGCTAGTTGAAATTGATGTTTCCATGCCATGATCAAATGGTGTTTTAACTTCATTTTTGGT
131 GTTGAACTAGTTGAAATTGATGTTTCCATACCATGATCAAATGGTGCTTTAACTTCATTGTTGGT
*
11897242 TGCTTGATATTATGAGATGGGTATTTTTGAGCCCCTTCAAGCAACTCCCAGTTTGAAAATCATCA
196 TGCTTGATATTACGAGATGGGTATTTTTGAGCCCCTTCAAGCAACTCCCAGTTTGAAAATCATCA
*
11897307 CCTGCCCATGAAAGTTCTGTAAGAAAAATTCTTGCATTATGTACTATTATTTATTTTTCTCTTTT
261 CCTGCCCATGAAAATTCTGTAAGAAAAATTCTTGCATTATGTACTATTATTTATTTTTCT-TTTT
11897372 TTATGGATTCTGTTTGAGAAAAGATCATTGTTGTGTTTAACGGGTTGGTTTTCCCTGATTATGTA
325 TTATGGATTCTGTTTGAGAAAAGATCATTGTTGTGTTTAACGGGTTGGTTTTCCCTGATTATGTA
11897437 CAGTGCATGAGAATCCATCATGCAGGTAAC
390 CAGTGCATGAGAATCCATCATGCAGGTAAC
11897467 ATGTTCTTTC
Statistics
Matches: 404, Mismatches: 14, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
421 183 0.45
422 221 0.55
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (422 bp):
CTGCATAATTGATAAATTGCTCTGAACCTTCCCTACTCTCTCTGCAGAAAGACTTCTTGTATTAA
CTGCCTGAGTAGACAAGTTTAATTTGTTGCCTTAAGCTACATTCTAATTGTACAAAAAAGGTGAT
GTTGAACTAGTTGAAATTGATGTTTCCATACCATGATCAAATGGTGCTTTAACTTCATTGTTGGT
TGCTTGATATTACGAGATGGGTATTTTTGAGCCCCTTCAAGCAACTCCCAGTTTGAAAATCATCA
CCTGCCCATGAAAATTCTGTAAGAAAAATTCTTGCATTATGTACTATTATTTATTTTTCTTTTTT
TATGGATTCTGTTTGAGAAAAGATCATTGTTGTGTTTAACGGGTTGGTTTTCCCTGATTATGTAC
AGTGCATGAGAATCCATCATGCAGGTAACTGC
Found at i:11901460 original size:19 final size:17
Alignment explanation
Indices: 11901422--11901461 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
11901412 TTATATATGG
*
11901422 ATTAATTATTTAGTTGA
1 ATTAATTATTTAGTTAA
11901439 ATTAATTAATTTAAGTTAA
1 ATTAATT-ATTT-AGTTAA
11901458 ATTA
1 ATTA
11901462 TAAAATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 4 0.20
19 9 0.45
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (17 bp):
ATTAATTATTTAGTTAA
Found at i:11910670 original size:21 final size:21
Alignment explanation
Indices: 11910644--11910706 Score: 58
Period size: 21 Copynumber: 2.9 Consensus size: 21
11910634 TTTTATATAT
11910644 TATATATTTTAAACTATTTTA
1 TATATATTTTAAACTATTTTA
*
11910665 TATATATATATTAAAACTCTATTTA
1 TATATAT-T-TT-AAACTAT-TTTA
*
11910690 T-T-TATTTTAAAATATTT
1 TATATATTTTAAACTATTT
11910707 CATTTATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 9 0.26
22 2 0.06
23 5 0.14
24 7 0.20
25 5 0.14
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.56
Consensus pattern (21 bp):
TATATATTTTAAACTATTTTA
Found at i:11910690 original size:25 final size:26
Alignment explanation
Indices: 11910634--11910682 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11910624 CCAGATTCCC
*
11910634 TTTTATATATTATATATTTTAAACTA
1 TTTTATATATTATATATTTAAAACTA
11910660 TTTTATATA-TATATA-TTAAAACT
1 TTTTATATATTATATATTTAAAACT
11910683 CTATTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 6 0.27
26 9 0.41
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (26 bp):
TTTTATATATTATATATTTAAAACTA
Found at i:11923333 original size:26 final size:26
Alignment explanation
Indices: 11923303--11923354 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
11923293 ATCCTTAAAC
11923303 CCATAATTTATCATAAAACTTCAAAT
1 CCATAATTTATCATAAAACTTCAAAT
11923329 CCATAATTTATCATAAAACTTCAAAT
1 CCATAATTTATCATAAAACTTCAAAT
11923355 ACTAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (26 bp):
CCATAATTTATCATAAAACTTCAAAT
Found at i:11923675 original size:41 final size:40
Alignment explanation
Indices: 11923618--11923713 Score: 147
Period size: 41 Copynumber: 2.4 Consensus size: 40
11923608 GGTTATCGAC
* *
11923618 TTTTAGCGGCGTTTTACCAAAAGCGTCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-AT
* *
11923659 TTTTAGCGGCATTTTACCAAAAGCGCCGCTATTGCTCTAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTAT
11923699 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
11923714 TGGTAAAACG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 15 0.30
41 35 0.70
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.38
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTAT
Found at i:11927972 original size:23 final size:23
Alignment explanation
Indices: 11927940--11927993 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
11927930 TTACTTAGGA
* **
11927940 AAAAACTAATTATTATTGCATTT
1 AAAAATTAATTATTATTAAATTT
11927963 AAAAATTAATTATTATTAAATTT
1 AAAAATTAATTATTATTAAATTT
11927986 AAAAATTA
1 AAAAATTA
11927994 TTTTAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (23 bp):
AAAAATTAATTATTATTAAATTT
Found at i:11928022 original size:40 final size:42
Alignment explanation
Indices: 11927976--11928068 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 42
11927966 AATTAATTAT
11927976 TATTAAATTTAAAAATT-ATTTTAAA-ATATA-TTGAACTACA
1 TATTAAATTTAAAAATTAATTTTAAATATATAGTTGAA-TACA
* * *
11928016 TATTAAATTT-TAAATTAATTTTAAATATGTAGTTGAATATA
1 TATTAAATTTAAAAATTAATTTTAAATATATAGTTGAATACA
*
11928057 TTTTAAATTTAA
1 TATTAAATTTAA
11928069 TAATAATGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
39 5 0.11
40 18 0.41
41 16 0.36
42 5 0.11
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.47
Consensus pattern (42 bp):
TATTAAATTTAAAAATTAATTTTAAATATATAGTTGAATACA
Found at i:11928063 original size:41 final size:40
Alignment explanation
Indices: 11927973--11928068 Score: 106
Period size: 41 Copynumber: 2.4 Consensus size: 40
11927963 AAAAATTAAT
11927973 TATTATTAAATTTAAAAATTATTTTAAAATATATTGAACTA
1 TATT-TTAAATTTAAAAATTATTTTAAAATATATTGAACTA
* * * *
11928014 CATATTAAATTT-TAAATTAATTTTAAATATGTAGTTGAA-TA
1 TATTTTAAATTTAAAAATT-ATTTTAAA-ATATA-TTGAACTA
11928055 TATTTTAAATTTAA
1 TATTTTAAATTTAA
11928069 TAATAATGTG
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
39 5 0.11
40 16 0.36
41 18 0.41
42 5 0.11
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (40 bp):
TATTTTAAATTTAAAAATTATTTTAAAATATATTGAACTA
Found at i:11931939 original size:3 final size:3
Alignment explanation
Indices: 11931933--11932057 Score: 88
Period size: 3 Copynumber: 41.0 Consensus size: 3
11931923 CAACAACAAC
* * *
11931933 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAG AAC AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * * * * * * ** *
11931979 AAA AAT AGT AAT AAA AAT AAT ATT AAC AGT AAA AAT AAT GGT GAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
11932027 AAAT AAT AGT AAT AAT AGT AAT AAT ATT AAT
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
11932058 TAATTAATTA
Statistics
Matches: 91, Mismatches: 29, Indels: 4
0.73 0.23 0.03
Matches are distributed among these distances:
3 86 0.95
4 5 0.05
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:11933509 original size:3 final size:3
Alignment explanation
Indices: 11933501--11933543 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
11933491 TTATTCCTAC
11933501 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
11933544 TATTTATAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:11936276 original size:55 final size:55
Alignment explanation
Indices: 11936204--11936322 Score: 138
Period size: 55 Copynumber: 2.2 Consensus size: 55
11936194 CGTGTGCGAC
*
11936204 ACTGACTTTAGGGCACGGCCATGACACACACCCGTGTGGCCT-ACCTGTAGG-CAAT
1 ACTGACTTTAGGACACGGCCATGACACACACCCGTGTGGCCTAACC-GT-GGACAAT
* * * *
11936259 ACTGACTTATA-GACACGGCTATGGCACACGCCGGTGTGGCCTAACCGTGGACAAT
1 ACTGACTT-TAGGACACGGCCATGACACACACCCGTGTGGCCTAACCGTGGACAAT
11936314 ACTGA-TTTA
1 ACTGACTTTA
11936323 AAAATTTAAG
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
53 2 0.04
54 4 0.07
55 45 0.80
56 5 0.09
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (55 bp):
ACTGACTTTAGGACACGGCCATGACACACACCCGTGTGGCCTAACCGTGGACAAT
Found at i:11937264 original size:93 final size:95
Alignment explanation
Indices: 11937077--11937277 Score: 268
Period size: 93 Copynumber: 2.1 Consensus size: 95
11937067 AAGTTGTCAC
* * * *
11937077 TGCCATGTCCCAGACATGGTCTTACGCTGGCTATCTCCATCGAGGCCGATGCCATGTCCCAGACA
1 TGCCATGTCCCAGACATCGTCTTACACTGGCTAACTCCATCGAGGCCGATGACATGTCCCAGACA
11937142 TGGTCTTACACTAGCACGAAACTTAGCCGA
66 TGGTCTTACACTAGCACGAAACTTAGCCGA
11937172 TG-CATGTCCCAGACA-CGTCTTACACTGGCTAACAT-CATCGAGGCCGAT-ACATGTCCCAGAC
1 TGCCATGTCCCAGACATCGTCTTACACTGGCTAAC-TCCATCGAGGCCGATGACATGTCCCAGAC
* ** *
11937233 AT-GTCTTACACTGGCACTCACCTCTACGCCGA
65 ATGGTCTTACACTAGCACGAAACT-TA-GCCGA
11937265 TGCCATGTCCCAG
1 TGCCATGTCCCAG
11937278 CCGTGGTCTT
Statistics
Matches: 94, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
91 17 0.18
92 16 0.17
93 35 0.37
94 24 0.26
95 2 0.02
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.23
Consensus pattern (95 bp):
TGCCATGTCCCAGACATCGTCTTACACTGGCTAACTCCATCGAGGCCGATGACATGTCCCAGACA
TGGTCTTACACTAGCACGAAACTTAGCCGA
Found at i:11937272 original size:47 final size:49
Alignment explanation
Indices: 11937077--11937390 Score: 214
Period size: 47 Copynumber: 6.7 Consensus size: 49
11937067 AAGTTGTCAC
* *
11937077 TGCCATGTCCCAGACATGGTCTTACGCTGGCTATCTC-CATCGAGGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTA-CTCACCTCGAGGCCGA
* ** * *
11937126 TGCCATGTCCCAGACATGGTCTTACACTAGC-ACGAAACT-TA-GCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTACTCACCTCGAGGCCGA
*
11937172 TG-CATGTCCCAGACA-CGTCTTACACTGGCTAACATCA--TCGAGGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCT-AC-TCACCTCGAGGCCGA
* * *
11937219 T-ACATGTCCCAGACAT-GTCTTACACTGGC-ACTCACCTCTACGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTACTCACCTCGAGGCCGA
* * ** * *
11937265 TGCCATGTCCCAGCCGTGGTCTTACA-TGGGCTA-TCATGAT-GCGGCTGA
1 TGCCATGTCCCAGACATGGTCTTACACT-GGCTACTCA-CCTCGAGGCCGA
* * * ** * *
11937313 TG-CATGTCCCA-AGCA-CGTCTTACACTAGC-CCTCGTCTCAATGCCGA
1 TGCCATGTCCCAGA-CATGGTCTTACACTGGCTACTCACCTCGAGGCCGA
* *
11937359 TGCCATGTCCCAAACATGGTCTTATACTGGCT
1 TGCCATGTCCCAGACATGGTCTTACACTGGCT
11937391 CCCCCATAAC
Statistics
Matches: 204, Mismatches: 38, Indels: 46
0.71 0.13 0.16
Matches are distributed among these distances:
44 15 0.07
45 17 0.08
46 37 0.18
47 70 0.34
48 34 0.17
49 31 0.15
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (49 bp):
TGCCATGTCCCAGACATGGTCTTACACTGGCTACTCACCTCGAGGCCGA
Found at i:11937379 original size:94 final size:95
Alignment explanation
Indices: 11937077--11937390 Score: 302
Period size: 94 Copynumber: 3.3 Consensus size: 95
11937067 AAGTTGTCAC
* * *
11937077 TGCCATGTCCCAGACATGGTCTTACGCTGGCTATC-TCCATCGAGGCCGATGCCATGTCCCAGAC
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTAACAT-CATCGAGGCCGAT-ACATGTCCCAGAC
* ** * *
11937141 ATGGTCTTACACTAGCACGAAACT-TA-GCCGA
64 A-CGTCTTACACTAGCACTCACCTCAACGCCGA
* *
11937172 TG-CATGTCCCAGACA-CGTCTTACACTGGCTAACATCATCGAGGCCGATACATGTCCCAGACAT
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTAACATCATCGAGGCCGATACATGTCCCAGACAC
* *
11937235 GTCTTACACTGGCACTCACCTCTACGCCGA
66 GTCTTACACTAGCACTCACCTCAACGCCGA
* * * * * * *
11937265 TGCCATGTCCCAGCCGTGGTCTTACA-TGGGCTATCATGAT-GCGGCTGATGCATGTCCCA-AGC
1 TGCCATGTCCCAGACATGGTCTTACACT-GGCTAACATCATCGAGGCCGATACATGTCCCAGA-C
* ** *
11937327 ACGTCTTACACTAGCCCTCGTCTCAATGCCGA
64 ACGTCTTACACTAGCACTCACCTCAACGCCGA
* *
11937359 TGCCATGTCCCAAACATGGTCTTATACTGGCT
1 TGCCATGTCCCAGACATGGTCTTACACTGGCT
11937391 CCCCCATAAC
Statistics
Matches: 183, Mismatches: 28, Indels: 17
0.80 0.12 0.07
Matches are distributed among these distances:
91 17 0.09
92 15 0.08
93 36 0.20
94 94 0.51
95 21 0.11
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (95 bp):
TGCCATGTCCCAGACATGGTCTTACACTGGCTAACATCATCGAGGCCGATACATGTCCCAGACAC
GTCTTACACTAGCACTCACCTCAACGCCGA
Found at i:11939078 original size:35 final size:36
Alignment explanation
Indices: 11939039--11939112 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 36
11939029 AAATTTTATA
11939039 AAAAATGATATAAAAACTAAATG-TAACTTTGGTTG
1 AAAAATGATATAAAAACTAAATGTTAACTTTGGTTG
*
11939074 AAAAATGATATAAAAATTAAATGTTAACTTTGGTTG
1 AAAAATGATATAAAAACTAAATGTTAACTTTGGTTG
11939110 AAA
1 AAA
11939113 TTGTAAAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
35 22 0.59
36 15 0.41
ACGTcount: A:0.50, C:0.04, G:0.14, T:0.32
Consensus pattern (36 bp):
AAAAATGATATAAAAACTAAATGTTAACTTTGGTTG
Found at i:11941541 original size:21 final size:22
Alignment explanation
Indices: 11941503--11941546 Score: 65
Period size: 20 Copynumber: 2.0 Consensus size: 22
11941493 GAATGAACCC
11941503 AAAATCAGAGAATCAGAAAACAA
1 AAAATCAGAGAATCAG-AAACAA
11941526 AAAATCA-A-AATCAGAAACAA
1 AAAATCAGAGAATCAGAAACAA
11941546 A
1 A
11941547 GGTGATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 6 0.29
22 1 0.05
23 7 0.33
ACGTcount: A:0.68, C:0.14, G:0.09, T:0.09
Consensus pattern (22 bp):
AAAATCAGAGAATCAGAAACAA
Found at i:11942189 original size:6 final size:6
Alignment explanation
Indices: 11942127--11942266 Score: 53
Period size: 6 Copynumber: 23.2 Consensus size: 6
11942117 ATTTTTTCTC
* *
11942127 ATTATT -TTATT -TTAATT -TTAAT ATTATT CA-TACT ATTA-T ATT-TT
1 ATTATT ATTATT ATT-ATT ATTATT ATTATT -ATTATT ATTATT ATTATT
* * ** *
11942171 ATTACT GTTATT ATTATT ATTATAT ATT-TT ATTTATT AGCATT -TCATT
1 ATTATT ATTATT ATTATT ATTAT-T ATTATT A-TTATT ATTATT ATTATT
* * *
11942219 ATTATT ATTTTT ACTTAAT ACTTATAT ATATATT ATATAGT ATTATT A
1 ATTATT ATTATT A-TTATT A-TTAT-T AT-TATT AT-TATT ATTATT A
11942267 ACAGTTTTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 26
0.71 0.12 0.18
Matches are distributed among these distances:
5 24 0.23
6 49 0.47
7 26 0.25
8 5 0.05
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (6 bp):
ATTATT
Found at i:11942428 original size:23 final size:23
Alignment explanation
Indices: 11942402--11942573 Score: 145
Period size: 25 Copynumber: 7.2 Consensus size: 23
11942392 AAATTTTATG
11942402 TTTTT-TATATATTATGTATATA
1 TTTTTATATATATTATGTATATA
11942424 TTTTTAATATCATATTAT-TCATATA
1 TTTTT-ATAT-ATATTATGT-ATATA
11942449 -TTTTAT-TATATTATGTATATA
1 TTTTTATATATATTATGTATATA
*
11942470 TTTTTAATAACTATATTATGTATGTA
1 TTTTT-AT-A-TATATTATGTATATA
* * *
11942496 TTTTTAACACTATATTACGTACATA
1 TTTTT-ATA-TATATTATGTATATA
*
11942521 CTTTTAATATCATTATTATGTATATA
1 -TTTTTATAT-A-TATTATGTATATA
* * *
11942547 TTTTTACATGTATTATGTACATA
1 TTTTTATATATATTATGTATATA
11942570 TTTT
1 TTTT
11942574 CAATAACTAC
Statistics
Matches: 124, Mismatches: 13, Indels: 25
0.77 0.08 0.15
Matches are distributed among these distances:
21 12 0.10
22 11 0.09
23 20 0.16
24 9 0.07
25 36 0.29
26 36 0.29
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.56
Consensus pattern (23 bp):
TTTTTATATATATTATGTATATA
Found at i:11942447 original size:25 final size:25
Alignment explanation
Indices: 11942410--11942578 Score: 156
Period size: 26 Copynumber: 6.9 Consensus size: 25
11942400 TGTTTTTTAT
11942410 ATATTATGTATATATTTTTAATATC
1 ATATTATGTATATATTTTTAATATC
11942435 ATATTAT-TCATATA-TTTT-AT-T-
1 ATATTATGT-ATATATTTTTAATATC
*
11942456 ATATTATGTATATATTTTTAATAAC
1 ATATTATGTATATATTTTTAATATC
* *
11942481 TATATTATGTATGTATTTTTAACA-C
1 -ATATTATGTATATATTTTTAATATC
* * *
11942506 TATATTACGTACATACTTTTAATATC
1 -ATATTATGTATATATTTTTAATATC
*
11942532 ATTATTATGTATATATTTTT-ACAT-
1 A-TATTATGTATATATTTTTAATATC
* * *
11942556 GTATTATGTACATATTTTCAATA
1 ATATTATGTATATATTTTTAATA
11942579 ACTACATCAT
Statistics
Matches: 118, Mismatches: 16, Indels: 21
0.76 0.10 0.14
Matches are distributed among these distances:
21 12 0.10
22 6 0.05
23 20 0.17
24 7 0.06
25 36 0.31
26 37 0.31
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (25 bp):
ATATTATGTATATATTTTTAATATC
Found at i:11942527 original size:51 final size:49
Alignment explanation
Indices: 11942408--11942582 Score: 166
Period size: 51 Copynumber: 3.6 Consensus size: 49
11942398 TATGTTTTTT
* *
11942408 ATATATTATGTATATATTTTTAATATC-A-TATTAT-TCATATA-TTTTA-
1 ATATATTATGTACATA-TTTTAATAACTATTATTATGT-ATATATTTTTAC
* * *
11942454 TTATATTATGTATATATTTTTAATAACTA-TATTATGTATGTATTTTTAAC
1 ATATATTATGTACATA-TTTTAATAACTATTATTATGTATATATTTTT-AC
* *
11942504 ACTATATTACGTACATACTTTTAATATC-ATTATTATGTATATATTTTTAC
1 A-TATATTATGTACATA-TTTTAATAACTATTATTATGTATATATTTTTAC
*
11942554 ATGTATTATGTACATATTTTCAATAACTA
1 ATATATTATGTACATATTTT-AATAACTA
11942583 CATCATATGT
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
46 25 0.23
47 11 0.10
48 9 0.08
49 19 0.18
50 5 0.05
51 39 0.36
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (49 bp):
ATATATTATGTACATATTTTAATAACTATTATTATGTATATATTTTTAC
Found at i:11942592 original size:51 final size:51
Alignment explanation
Indices: 11942455--11942598 Score: 147
Period size: 51 Copynumber: 2.8 Consensus size: 51
11942445 TATATTTTAT
* * *
11942455 TATATTATGTATATATTTTTAATAACTATAT-TATGTATGTATTTTTAACAC
1 TATATTATGTACATA-TTTTAATAACTACATATATGTATATATTTTTAACAC
*
11942506 TATATTACGTACATACTTTTAAT-A-T-CATTATTATGTATATATTTTT-ACA-
1 TATATTATGTACATA-TTTTAATAACTACA-TA-TATGTATATATTTTTAACAC
*
11942555 TGTATTATGTACATATTTTCAATAACTACATCATATGTATATAT
1 TATATTATGTACATATTTT-AATAACTACAT-ATATGTATATAT
11942599 ATTATGTGCA
Statistics
Matches: 78, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
48 5 0.06
49 18 0.23
50 5 0.06
51 47 0.60
52 3 0.04
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (51 bp):
TATATTATGTACATATTTTAATAACTACATATATGTATATATTTTTAACAC
Found at i:11942766 original size:18 final size:20
Alignment explanation
Indices: 11942745--11942789 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
11942735 ATTTCTATTT
11942745 TATTTTT-TTATTTGTC-AA
1 TATTTTTATTATTTGTCTAA
*
11942763 TATTATTTATTATTTTTCTAA
1 TATT-TTTATTATTTGTCTAA
11942784 TATTTT
1 TATTTT
11942790 GATATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 4 0.17
19 3 0.13
20 10 0.43
21 6 0.26
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.69
Consensus pattern (20 bp):
TATTTTTATTATTTGTCTAA
Found at i:11942796 original size:8 final size:7
Alignment explanation
Indices: 11942783--11942816 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 7
11942773 TATTTTTCTA
11942783 ATATTTT
1 ATATTTT
11942790 GATATTTT
1 -ATATTTT
11942798 AATATTTT
1 -ATATTTT
11942806 ATATTTT
1 ATATTTT
11942813 ATAT
1 ATAT
11942817 ACTTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (7 bp):
ATATTTT
Found at i:11942802 original size:16 final size:15
Alignment explanation
Indices: 11942781--11942826 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 15
11942771 ATTATTTTTC
11942781 TAATATTTTGATATTT
1 TAATATTTT-ATATTT
11942797 TAATATTTTATATTT
1 TAATATTTTATATTT
11942812 TATATACTTTT-TATT
1 TA-ATA-TTTTATATT
11942827 ATTCGCATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.29
16 16 0.57
17 4 0.14
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TAATATTTTATATTT
Found at i:11946413 original size:4 final size:4
Alignment explanation
Indices: 11946406--11946433 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
11946396 ATTCATTTGG
11946406 CATT CATT CATT CATT CATT CATT CATT
1 CATT CATT CATT CATT CATT CATT CATT
11946434 GCATGTACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (4 bp):
CATT
Found at i:11947070 original size:27 final size:27
Alignment explanation
Indices: 11947047--11947102 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
11947037 GAAGAAAGGC
11947047 TCAAGGCGATAGAAGGTGCTGAAACCT
1 TCAAGGCGATAGAAGGTGCTGAAACCT
11947074 TCAAGGCGATAGAAGGTGCTGAAACCT
1 TCAAGGCGATAGAAGGTGCTGAAACCT
11947101 TC
1 TC
11947103 TCTACACTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.20, G:0.29, T:0.20
Consensus pattern (27 bp):
TCAAGGCGATAGAAGGTGCTGAAACCT
Found at i:11954961 original size:160 final size:161
Alignment explanation
Indices: 11954628--11955016 Score: 531
Period size: 160 Copynumber: 2.4 Consensus size: 161
11954618 GGTATTCTGA
* * * * *
11954628 TGTTTTT--ATTTCTGTTTT-C-AAAAATTAATTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
1 TGTTTTTCAATTTATGTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
** * * * * * *
11954689 CACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGA
66 CACACTAAGGTAATCTCAATTTATG-CTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
*
11954754 GCCTCGGTTCACATGCCGAGATATTTTCAAATTC
130 ACCTCGG-T-ACATGCCGAGATATTTTCAAATTC
*
11954788 TATTTTTCAATTTATGTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
1 TGTTTTTCAATTTATGTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
11954853 CACACTAAGGTAATCTCAATTTATG-TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
66 CACACTAAGGTAATCTCAATTTATGCTTTC-AAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
*
11954917 ACCTCGG-ACATGCCGAGGTATTTTCAAATTC
130 ACCTCGGTACATGCCGAGATATTTTCAAATTC
*
11954948 TGTTTTTCAATTTATGTTTTCCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGT
1 TGTTTTTCAATTTATGTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
11955012 TCACA
65 TCACA
11955017 TGCCGAGATA
Statistics
Matches: 205, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
159 2 0.01
160 93 0.45
162 14 0.07
163 39 0.19
164 57 0.28
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (161 bp):
TGTTTTTCAATTTATGTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
CACACTAAGGTAATCTCAATTTATGCTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAA
CCTCGGTACATGCCGAGATATTTTCAAATTC
Found at i:11955064 original size:90 final size:89
Alignment explanation
Indices: 11954874--11955106 Score: 312
Period size: 90 Copynumber: 2.6 Consensus size: 89
11954864 AATCTCAATT
* * *
11954874 TATG-TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGG--ACATGCCGAGGT
1 TATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGAT
* **
11954936 ATTTTCAAATTCTGTTTTTCAATT
66 ATTTCCAAATTCTGTTTTTCAAAC
* *
11954960 TATGTTTTCCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGTTCACATGCCGAGA
1 TATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-TCACATGCCGAGA
*
11955025 TATTTCCAAATTTTG-TTTTCAAAC
65 TATTTCCAAATTCTGTTTTTCAAAC
* *
11955049 TATGTTTTTCAAAAAAATTAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGTCACA
1 TATG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACA
11955107 CTGAGGTATT
Statistics
Matches: 128, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
86 4 0.03
87 42 0.33
89 11 0.09
90 69 0.54
91 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (89 bp):
TATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGAT
ATTTCCAAATTCTGTTTTTCAAAC
Found at i:11955143 original size:250 final size:251
Alignment explanation
Indices: 11954701--11955299 Score: 868
Period size: 250 Copynumber: 2.4 Consensus size: 251
11954691 CGTTGAGGTA
* *
11954701 TTTTCAATTTCTGTCTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCAC
1 TTTTCAATTTATGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCAC
* ** *
11954766 ATGCCGAGATATTTTCAAATTCTAT-TTTTCAATTTATGTTTTCCAAAAAATCAACTCATATTGC
66 ATGCCGAGATATTTCCAAATT-TATGTTTTCAAACTATGTTTTCAAAAAAATCAACTCATATTGC
*
11954830 GAGAGGTGAGTTGAGCCTCAGGTCACACTAAGGTAATCTCAATTTATGTTTCAAAAAAATCAACT
130 GAGAGCTGAGTTGAGCCTCAGGTCACACTAAGGTAATCTCAATTTATGTTTCAAAAAAATCAACT
* * **
11954895 CATATTGCGAGAAGTGAGTTGAACCTCGG-ACATGCCGAGGTATTTTCAAATTCTGT
195 CATATTGCGAGAAGTAAGTTGAACCTCGGCACACGCCGAGGTATTTTCAAATTCTAC
*
11954951 TTTTCAATTTATGT-TTTCCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGTTCA
1 TTTTCAATTTATGTCTTT-CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCA
*
11955015 CATGCCGAGATATTTCCAAATTT-TGTTTTCAAACTATGTTTTTCAAAAAAATTAACTCATATTG
65 CATGCCGAGATATTTCCAAATTTATGTTTTCAAACTATG-TTTTCAAAAAAATCAACTCATATTG
* * * *
11955079 CGAGAGCTGAGTTGAGCCTCAGGTCACACTGAGGTATTCTCAATTTATTTTTCAAAACAATCAAC
129 CGAGAGCTGAGTTGAGCCTCAGGTCACACTAAGGTAATCTCAATTTATGTTTCAAAAAAATCAAC
* * * * *
11955144 TCATATTGCGAGAGGTAAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTTCTAC
194 TCATATTGCGAGAAGTAAGTTGAACCTCGG--CACACGCCGAGGTATTTTCAAATTCTAC
* *
11955204 TTTTCAATTTATGTGTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCAC
1 TTTTCAATTTATGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCAC
* * *
11955268 ACGCCGAGGTATTTCC-AATTTCTGTTTTCAAA
66 ATGCCGAGATATTTCCAAATTTATGTTTTCAAA
11955300 AAAAAAATCA
Statistics
Matches: 315, Mismatches: 26, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
248 1 0.00
249 15 0.05
250 187 0.59
251 5 0.02
252 67 0.21
253 37 0.12
254 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (251 bp):
TTTTCAATTTATGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCAC
ATGCCGAGATATTTCCAAATTTATGTTTTCAAACTATGTTTTCAAAAAAATCAACTCATATTGCG
AGAGCTGAGTTGAGCCTCAGGTCACACTAAGGTAATCTCAATTTATGTTTCAAAAAAATCAACTC
ATATTGCGAGAAGTAAGTTGAACCTCGGCACACGCCGAGGTATTTTCAAATTCTAC
Found at i:11955149 original size:163 final size:162
Alignment explanation
Indices: 11954952--11955332 Score: 457
Period size: 163 Copynumber: 2.3 Consensus size: 162
11954942 AAATTCTGTT
*
11954952 TTTCAATTTATGTTTTCCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGTTCACA
1 TTTCAATTTATGTTTT-CAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACA
* * * *
11955017 TGCCGAGATATTTCCAAATTT-T-GTTTTCAAACTATGTTTTTCAAAAAAATTAACTCATATTGC
65 CGCCGAGATATTTCC-AATTTCTACTTTTCAAACTATGTGTTTC--AAAAATCAACTCATATTGC
*
11955080 GAGAGCTGAGTTGAGCCTCAGG-TCACA-CTGAGGTA
127 GAGAGCTGAGTTGAGCCTC-GGATCACACCCGAGGTA
* * *
11955115 TTCTCAATTTAT-TTTTCAAAACAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTTGGCTCAC
1 TT-TCAATTTATGTTTTCAAAA-AATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCAC
* * * **
11955179 ACGCTGAGGTATTTTCAATTTCTACTTTTCAATTTATGTGTTTCAAAAATCAACTCATATTGCGA
64 ACGCCGAGATATTTCCAATTTCTACTTTTCAAACTATGTGTTTCAAAAATCAACTCATATTGCGA
*
11955244 GAGGTGAGTTGAGCCTCGGATCACACGCCGAGGTA
129 GAGCTGAGTTGAGCCTCGGATCACAC-CCGAGGTA
* *
11955279 TTTCCAATTTCTGTTTTCAAAAAAAAAATCAACTCATATTGCTAGAGGTGAGTT
1 TTT-CAATTTATGTTTTC----AAAAAATCAACTCATATTGCAAGAGGTGAGTT
11955333 AAGTCCTAGG
Statistics
Matches: 187, Mismatches: 18, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
161 2 0.01
162 51 0.27
163 58 0.31
164 41 0.22
165 5 0.03
168 26 0.14
169 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (162 bp):
TTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACAC
GCCGAGATATTTCCAATTTCTACTTTTCAAACTATGTGTTTCAAAAATCAACTCATATTGCGAGA
GCTGAGTTGAGCCTCGGATCACACCCGAGGTA
Found at i:11955179 original size:73 final size:74
Alignment explanation
Indices: 11955053--11955199 Score: 208
Period size: 73 Copynumber: 2.0 Consensus size: 74
11955043 TCAAACTATG
* *
11955053 TTTTTCAAAAAAATTAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGTCACA-CTGAGGTATT
1 TTTTTCAAAAAAATCAACTCATATTGCGAGAGCTAAGTTGAGCCTCAGGTCACACCTGAGGTATT
11955117 CTCAATTTA
66 CTCAATTTA
* * *
11955126 TTTTTCAAAACAATCAACTCATATTGCGAGAGGTAAGTTGAGCCT-TGGCTCACACGCTGAGGTA
1 TTTTTCAAAAAAATCAACTCATATTGCGAGAGCTAAGTTGAGCCTCAGG-TCACAC-CTGAGGTA
*
11955190 TTTTCAATTT
64 TTCTCAATTT
11955200 CTACTTTTCA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
72 2 0.03
73 46 0.71
75 17 0.26
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (74 bp):
TTTTTCAAAAAAATCAACTCATATTGCGAGAGCTAAGTTGAGCCTCAGGTCACACCTGAGGTATT
CTCAATTTA
Found at i:11955269 original size:89 final size:88
Alignment explanation
Indices: 11955118--11955298 Score: 267
Period size: 89 Copynumber: 2.0 Consensus size: 88
11955108 TGAGGTATTC
* *
11955118 TCAATTTATTTTTCAAAACAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTTGGCTCACACGC
1 TCAATTTATTTTTCAAAACAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGATCACACGC
* *
11955183 TGAGGTATTTTCAATTTCTACTTT
66 CGAGGTATTTCCAATTTCT-CTTT
*
11955207 TCAATTTATGTGTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACAC
1 TCAATTTAT-T-TTTCAAAACAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGATCACAC
*
11955270 GCCGAGGTATTTCCAATTTCTGTTT
64 GCCGAGGTATTTCCAATTTCTCTTT
11955295 TCAA
1 TCAA
11955299 AAAAAAAATC
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
88 7 0.08
89 69 0.82
90 4 0.05
91 4 0.05
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (88 bp):
TCAATTTATTTTTCAAAACAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGATCACACGC
CGAGGTATTTCCAATTTCTCTTT
Found at i:11955861 original size:25 final size:25
Alignment explanation
Indices: 11955827--11955874 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
11955817 AAAAGTCTTT
*
11955827 ACTCTATTCTCGTTACACGACAACA
1 ACTCTATTCTCGTGACACGACAACA
*
11955852 ACTCTGTTCTCGTGACACGACAA
1 ACTCTATTCTCGTGACACGACAA
11955875 TGAGTAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.27
Consensus pattern (25 bp):
ACTCTATTCTCGTGACACGACAACA
Found at i:11956414 original size:21 final size:22
Alignment explanation
Indices: 11956376--11956419 Score: 65
Period size: 20 Copynumber: 2.0 Consensus size: 22
11956366 GAACGAACCC
11956376 AAAATCAGAGAATCAGAAAACAA
1 AAAATCAGAGAATCAG-AAACAA
11956399 AAAATCA-A-AATCAGAAACAA
1 AAAATCAGAGAATCAGAAACAA
11956419 A
1 A
11956420 GGTGATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 6 0.29
22 1 0.05
23 7 0.33
ACGTcount: A:0.68, C:0.14, G:0.09, T:0.09
Consensus pattern (22 bp):
AAAATCAGAGAATCAGAAACAA
Found at i:11957100 original size:25 final size:22
Alignment explanation
Indices: 11957056--11957121 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
11957046 ATTTTTTCTC
*
11957056 ATTATT-TTATTTTAATTTTAAT
1 ATTATTATTATTAT-ATTTTAAT
*
11957078 ATTATTCATACTATTATATTTTATT
1 ATTATT-AT--TATTATATTTTAAT
*
11957103 ATTGTTATTATTATATTTT
1 ATTATTATTATTATATTTT
11957122 TTATTTATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
22 17 0.46
24 3 0.08
25 12 0.32
26 5 0.14
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (22 bp):
ATTATTATTATTATATTTTAAT
Found at i:11957102 original size:22 final size:22
Alignment explanation
Indices: 11957077--11957126 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
11957067 TTAATTTTAA
11957077 TATTATTCATACTATTATATTT
1 TATTATTCATACTATTATATTT
** *
11957099 TATTATTGTTATTATTATATTT
1 TATTATTCATACTATTATATTT
11957121 T-TTATT
1 TATTATT
11957127 TATTAGCATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (22 bp):
TATTATTCATACTATTATATTT
Found at i:11957131 original size:19 final size:22
Alignment explanation
Indices: 11957056--11957126 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 22
11957046 ATTTTTTCTC
11957056 ATTATT-TTATT-TTA-ATTTT
1 ATTATTGTTATTATTATATTTT
* *
11957075 AATATTATTCATACTATTATATTTT
1 ATTATTGTT-AT--TATTATATTTT
11957100 ATTATTGTTATTATTATATTTT
1 ATTATTGTTATTATTATATTTT
11957122 -TTATT
1 ATTATT
11957127 TATTAGCATC
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
19 5 0.12
20 2 0.05
21 7 0.16
22 11 0.26
23 1 0.02
24 5 0.12
25 12 0.28
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (22 bp):
ATTATTGTTATTATTATATTTT
Found at i:11957276 original size:46 final size:48
Alignment explanation
Indices: 11957222--11957317 Score: 178
Period size: 46 Copynumber: 2.0 Consensus size: 48
11957212 TTGTTAATAT
11957222 ATTCGTATGTCATATATATATTCTTTT-A-ATATATATATTATACTCC
1 ATTCGTATGTCATATATATATTCTTTTAATATATATATATTATACTCC
11957268 ATTCGTATGTCATATATATATTCTTTTAATATATATATATTATACTCC
1 ATTCGTATGTCATATATATATTCTTTTAATATATATATATTATACTCC
11957316 AT
1 AT
11957318 ATTACGCATA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
46 27 0.56
47 1 0.02
48 20 0.42
ACGTcount: A:0.33, C:0.12, G:0.04, T:0.50
Consensus pattern (48 bp):
ATTCGTATGTCATATATATATTCTTTTAATATATATATATTATACTCC
Found at i:11957328 original size:46 final size:45
Alignment explanation
Indices: 11957230--11957335 Score: 144
Period size: 46 Copynumber: 2.3 Consensus size: 45
11957220 ATATTCGTAT
*
11957230 GTCATATATATATTCTTTTAATATATATATTATACTCCATTCGTAT
1 GTCATATATATATTCTTTTAATATATATATTATACTCCATTC-TAC
11957276 GTCATATATATATTCTTTTAATATATATATATTATACTCCATAT-TAC
1 GTCATATATATATTCTTTT-A-ATATATATATTATACTCCAT-TCTAC
*
11957323 G-CATATATGTATT
1 GTCATATATATATT
11957336 AATATTATAT
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
46 30 0.55
47 4 0.07
48 20 0.36
49 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.05, T:0.49
Consensus pattern (45 bp):
GTCATATATATATTCTTTTAATATATATATTATACTCCATTCTAC
Found at i:11957377 original size:17 final size:17
Alignment explanation
Indices: 11957357--11957390 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
11957347 ATGTATATTA
11957357 TTTTTTAAATATTATGT
1 TTTTTTAAATATTATGT
*
11957374 TTTTTTATATATTATGT
1 TTTTTTAAATATTATGT
11957391 ATATATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (17 bp):
TTTTTTAAATATTATGT
Found at i:11957429 original size:21 final size:22
Alignment explanation
Indices: 11957338--11957445 Score: 83
Period size: 23 Copynumber: 5.1 Consensus size: 22
11957328 TATGTATTAA
11957338 TATTATATTATGT-ATATTATTT
1 TATTATATTATGTCATA-TATTT
11957360 T-TTAAATATTATGT--T-T-TTT
1 TATT--ATATTATGTCATATATTT
11957379 TA-TATATTATGT-ATATATTT
1 TATTATATTATGTCATATATTT
*
11957399 AATATCATATTAT-TCATATATTT
1 --TATTATATTATGTCATATATTT
11957422 TATTATATTATGTACATAT-TTT
1 TATTATATTATGT-CATATATTT
11957444 TA
1 TA
11957446 ATAACTATAT
Statistics
Matches: 72, Mismatches: 2, Indels: 24
0.73 0.02 0.24
Matches are distributed among these distances:
17 9 0.12
18 1 0.01
19 6 0.08
20 4 0.06
21 12 0.17
22 11 0.15
23 29 0.40
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (22 bp):
TATTATATTATGTCATATATTT
Found at i:11957481 original size:24 final size:26
Alignment explanation
Indices: 11957425--11957520 Score: 101
Period size: 26 Copynumber: 3.8 Consensus size: 26
11957415 TATATTTTAT
11957425 TATATTATGTACATATTTTTAATAAC
1 TATATTATGTACATATTTTTAATAAC
** *
11957451 TATATTATGTATGTA-TTTTAA-CAC
1 TATATTATGTACATATTTTTAATAAC
*
11957475 TATATTACT-TACATATTTTTAATATC
1 TATATTA-TGTACATATTTTTAATAAC
*
11957501 -ATTATTATGTATATATTTTT
1 TA-TATTATGTACATATTTTT
11957521 GTAATATTAT
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
24 13 0.23
25 15 0.26
26 29 0.51
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.54
Consensus pattern (26 bp):
TATATTATGTACATATTTTTAATAAC
Found at i:11957490 original size:50 final size:50
Alignment explanation
Indices: 11957381--11957519 Score: 143
Period size: 50 Copynumber: 2.9 Consensus size: 50
11957371 TGTTTTTTTA
* * *
11957381 TATATTATGT--ATATATTTAATATCA-TATTAT-TCATATATTTT---AT
1 TATATTATGTACATATTTTTAATAACATTATTATGT-ATATATTTTAACAC
*
11957425 TATATTATGTACATATTTTTAATAAC-TATATTATGTATGTATTTTAACAC
1 TATATTATGTACATATTTTTAATAACAT-TATTATGTATATATTTTAACAC
*
11957475 TATATTACT-TACATATTTTTAATATCATTATTATGTATATATTTT
1 TATATTA-TGTACATATTTTTAATAACATTATTATGTATATATTTT
11957520 TGTAATATTA
Statistics
Matches: 79, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
44 10 0.13
46 12 0.15
47 14 0.18
48 1 0.01
50 40 0.51
51 2 0.03
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (50 bp):
TATATTATGTACATATTTTTAATAACATTATTATGTATATATTTTAACAC
Found at i:11957728 original size:25 final size:23
Alignment explanation
Indices: 11957684--11957731 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
11957674 ATGTGCATAC
**
11957684 TTTTAATATTATTATGTATTTAT
1 TTTTAATATTATTACATATTTAT
11957707 TTTTAATATATATGTACATATTTAT
1 TTTTAATAT-TAT-TACATATTTAT
11957732 GTAGTATTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
24 3 0.14
25 9 0.43
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (23 bp):
TTTTAATATTATTACATATTTAT
Found at i:11957829 original size:16 final size:16
Alignment explanation
Indices: 11957797--11957841 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 16
11957787 TTATGTACAC
11957797 TTTTTTATTTCTATTTTA
1 TTTTTTATTT-T-TTTTA
11957815 TTTTTTTATTTTTTTTA
1 -TTTTTTATTTTTTTTA
11957832 TTTTTTATTT
1 TTTTTTATTT
11957842 GTCAATATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.38
17 5 0.19
18 1 0.04
19 10 0.38
ACGTcount: A:0.13, C:0.02, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTTATTTTTTTTA
Found at i:11957854 original size:20 final size:21
Alignment explanation
Indices: 11957829--11957871 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
11957819 TTTATTTTTT
*
11957829 TTATTTTTTATTTGTC-AATA
1 TTATTTATTATTTGTCTAATA
*
11957849 TTATTTATTATTTTTCTAATA
1 TTATTTATTATTTGTCTAATA
11957870 TT
1 TT
11957872 TTGATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (21 bp):
TTATTTATTATTTGTCTAATA
Found at i:11957889 original size:16 final size:15
Alignment explanation
Indices: 11957865--11957910 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
11957855 ATTATTTTTC
11957865 TAATATTTTGATATTT
1 TAATATTTT-ATATTT
*
11957881 TAATTTTTTATATTT
1 TAATATTTTATATTT
*
11957896 TATATATTTTTTATT
1 TA-ATATTTTATATT
11957911 ATTCACATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 8 0.31
16 18 0.69
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (15 bp):
TAATATTTTATATTT
Found at i:11961430 original size:21 final size:21
Alignment explanation
Indices: 11961406--11961449 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
11961396 ATAATAATAT
* * *
11961406 AATATAATAGAAGAATAAAGA
1 AATAAAATAGAAAAAGAAAGA
11961427 AATAAAATAGAAAAAGAAAGA
1 AATAAAATAGAAAAAGAAAGA
11961448 AA
1 AA
11961450 GAACAGACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.14
Consensus pattern (21 bp):
AATAAAATAGAAAAAGAAAGA
Found at i:11966782 original size:49 final size:47
Alignment explanation
Indices: 11966708--11966841 Score: 121
Period size: 48 Copynumber: 2.8 Consensus size: 47
11966698 CCATGTTAAC
* *
11966708 CCGCACACATAGTGCCTTAATAATCCATACACATA-TCGACGATTCAAAT
1 CCGCACACATAGTG-CTTAATAATCCACACACATAGT-G-CGATACAAAT
* *
11966757 CCGCACACATAGTGCTGT-ATAAATCCGCACACATAGTGCTATACAAAT
1 CCGCACACATAGTGCT-TAAT-AATCCACACACATAGTGCGATACAAAT
* * *
11966805 CTGCACACATAGTGCCATTCA-AATCCGCACACATAGT
1 CCGCACACATAGTG-C-TTAATAATCCACACACATAGT
11966842 TCCAAGGTCA
Statistics
Matches: 74, Mismatches: 5, Indels: 13
0.80 0.05 0.14
Matches are distributed among these distances:
48 41 0.55
49 30 0.41
50 3 0.04
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (47 bp):
CCGCACACATAGTGCTTAATAATCCACACACATAGTGCGATACAAAT
Done.