Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 39 of 343
Found at i:12889437 original size:29 final size:29
Alignment explanation
Indices: 12889351--12889434 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
12889341 CATAGTATCG
* * * *
12889351 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGG-TTTCTC
12889381 TAT-TCTGGATTTCTTTATTCTGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGTTTCTC
12889410 TATCTTGGATTTCTTTATTC-GGTTT
1 TATCTTGGATTTCTTTATTCTGGTTT
12889435 TCTTGTTATC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.10
29 23 0.48
30 20 0.42
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGTTTCTC
Found at i:12889438 original size:14 final size:15
Alignment explanation
Indices: 12889360--12889438 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
12889350 GTATCTTGGG
*
12889360 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
12889375 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
12889390 TTTCTTTATTCTGG-
1 TTTCTTTATTCTGGA
*
12889404 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
12889419 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
12889433 TTTCTT
1 TTTCTT
12889439 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
13 2 0.04
14 18 0.33
15 33 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:12891862 original size:46 final size:45
Alignment explanation
Indices: 12891809--12891984 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
12891799 TATTTGGGCA
12891809 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
12891855 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
12891902 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
12891948 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
12891985 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:12891964 original size:93 final size:93
Alignment explanation
Indices: 12891805--12891976 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
12891795 AGGATATTTG
* *
12891805 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
12891870 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
12891898 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
12891963 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
12891977 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:12895630 original size:47 final size:47
Alignment explanation
Indices: 12895509--12895719 Score: 269
Period size: 47 Copynumber: 4.7 Consensus size: 47
12895499 CGGAATAAAA
* * * *
12895509 AACGTGGTGCTAAGTAGATATACCACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT-T
*
12895557 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATT
* *
12895604 AACGTGGTGCTAAGTGAATATACCACGGTTA-A-ACA-TG------T
1 AACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATT
*
12895642 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATT
*
12895689 AACGTGGTGCTAAGTGGATATACCATGGTTA
1 AACGTGGTGCTAAGTGGATATACCACGGTTA
12895720 AACATGTAAC
Statistics
Matches: 141, Mismatches: 13, Indels: 19
0.82 0.08 0.11
Matches are distributed among these distances:
38 30 0.21
39 1 0.01
40 2 0.01
41 2 0.01
44 2 0.01
45 2 0.01
46 1 0.01
47 60 0.43
48 41 0.29
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (47 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATT
Found at i:12895654 original size:38 final size:38
Alignment explanation
Indices: 12895603--12895764 Score: 171
Period size: 38 Copynumber: 4.0 Consensus size: 38
12895593 ATTGATTCAT
*
12895603 TAACGTGGTGCTAAGTGAATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
12895641 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG
*
12895682 ATTCATTAACGTGGTGCTAAGTGGATATACCATGGTTAAACATG
1 ------TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* ** *
12895726 TAACGTGGTGCGAAGTGGATATGTCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
12895764 T
1 T
12895765 TAATTTGAAA
Statistics
Matches: 104, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
38 64 0.62
39 1 0.01
40 2 0.02
41 2 0.02
44 2 0.02
45 2 0.02
46 1 0.01
47 30 0.29
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:12895694 original size:85 final size:85
Alignment explanation
Indices: 12895551--12895757 Score: 378
Period size: 85 Copynumber: 2.4 Consensus size: 85
12895541 ACATATTGAT
12895551 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
12895616 AGTGAATATACCACGGTTAA
66 AGTGAATATACCACGGTTAA
12895636 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
* *
12895701 AGTGGATATACCATGGTTAA
66 AGTGAATATACCACGGTTAA
* *
12895721 ACATGTAACGTGGTGCGAAGTGGATATGTCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
12895758 TACATGTTAA
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 118 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
AGTGAATATACCACGGTTAA
Found at i:12898183 original size:11 final size:11
Alignment explanation
Indices: 12898169--12898194 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
12898159 TTTAAATTGC
12898169 TTTTATTTTTA
1 TTTTATTTTTA
12898180 TTTTATTTTTA
1 TTTTATTTTTA
12898191 TTTT
1 TTTT
12898195 GGCATTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:12901903 original size:14 final size:14
Alignment explanation
Indices: 12901884--12901910 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
12901874 AGTATGAAGG
12901884 AGTAAATTGAGATA
1 AGTAAATTGAGATA
12901898 AGTAAATTGAGAT
1 AGTAAATTGAGAT
12901911 GATCTTTTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.22, T:0.30
Consensus pattern (14 bp):
AGTAAATTGAGATA
Found at i:12907752 original size:25 final size:26
Alignment explanation
Indices: 12907720--12907774 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
12907710 TTATTAAATT
*
12907720 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
12907745 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
12907770 A-ATAT
1 ATATAT
12907775 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:12907961 original size:44 final size:45
Alignment explanation
Indices: 12907912--12908006 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
12907902 TTACACCTCT
* *
12907912 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
12907956 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
12908001 ATTACA
1 ATTACA
12908007 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:12908006 original size:16 final size:16
Alignment explanation
Indices: 12907987--12908038 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
12907977 GATTTGCTAT
* *
12907987 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
12908003 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
12908019 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
12908035 TACA
1 TACA
12908039 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:12908538 original size:23 final size:23
Alignment explanation
Indices: 12908512--12908589 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
12908502 TAATTTAAGT
12908512 TAACCTATCATGATAGTAAATAA
1 TAACCTATCATGATAGTAAATAA
* * * ** *
12908535 TAACATATAATTATCCTTTAATTTAA
1 TAACCTATCATGAT--AGTAA-ATAA
12908561 GTTAACCTATCATGATAGTAAATAA
1 --TAACCTATCATGATAGTAAATAA
12908586 TAAC
1 TAAC
12908590 ATGTAATTAT
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
23 15 0.39
25 6 0.16
26 6 0.16
28 11 0.29
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.36
Consensus pattern (23 bp):
TAACCTATCATGATAGTAAATAA
Found at i:12908556 original size:51 final size:51
Alignment explanation
Indices: 12908500--12908603 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
12908490 TTAGATCACT
12908500 TTTAATTTAAGTTAACCTATCATGATAGTAAATAATAACATATAATTATCC
1 TTTAATTTAAGTTAACCTATCATGATAGTAAATAATAACATATAATTATCC
*
12908551 TTTAATTTAAGTTAACCTATCATGATAGTAAATAATAACATGTAATTATCC
1 TTTAATTTAAGTTAACCTATCATGATAGTAAATAATAACATATAATTATCC
12908602 TT
1 TT
12908604 ATTATATATG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.40
Consensus pattern (51 bp):
TTTAATTTAAGTTAACCTATCATGATAGTAAATAATAACATATAATTATCC
Found at i:12918857 original size:36 final size:37
Alignment explanation
Indices: 12918811--12918881 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 37
12918801 ACTCAAAATA
* *
12918811 ATCATTTTTTGCTTAATTGTTCC-ATCAAAACAAACT
1 ATCATCTTTTGCTTAATTCTTCCGATCAAAACAAACT
* * *
12918847 ATCATCTTTTGTTTAGTTCTTCCGATTAAAACAAA
1 ATCATCTTTTGCTTAATTCTTCCGATCAAAACAAA
12918882 AAATCAAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
36 19 0.66
37 10 0.34
ACGTcount: A:0.32, C:0.18, G:0.07, T:0.42
Consensus pattern (37 bp):
ATCATCTTTTGCTTAATTCTTCCGATCAAAACAAACT
Found at i:12925099 original size:21 final size:21
Alignment explanation
Indices: 12925073--12925113 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
12925063 ATCTGCTCAA
* *
12925073 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
12925094 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
12925114 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:12929497 original size:60 final size:60
Alignment explanation
Indices: 12929392--12929504 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
12929382 TTATAGTTTT
* ** * * *
12929392 TTTCTTTTTTGGTCACTTAACTATGAAAAATTATAAAATGATCACCTAACTATAAATAAA
1 TTTCTTTTTTGATCACCCAACTATGAAAAATTACAAAAAGATCACCAAACTATAAATAAA
*
12929452 TTTCTTTTTTGATCACCCAACTATGAAAAGTTACAAAACAG-TCACCAAACTAT
1 TTTCTTTTTTGATCACCCAACTATGAAAAATTACAAAA-AGATCACCAAACTAT
12929505 TCAATTTTGT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
60 44 0.98
61 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.35
Consensus pattern (60 bp):
TTTCTTTTTTGATCACCCAACTATGAAAAATTACAAAAAGATCACCAAACTATAAATAAA
Found at i:12931986 original size:20 final size:20
Alignment explanation
Indices: 12931961--12931999 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
12931951 ACGTAACCCC
*
12931961 CAATAGTTAACGGTTGCAAT
1 CAATAGTTAAAGGTTGCAAT
12931981 CAATAGTTAAAGGTTGCAA
1 CAATAGTTAAAGGTTGCAA
12932000 ATTGGAGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (20 bp):
CAATAGTTAAAGGTTGCAAT
Found at i:12937873 original size:14 final size:14
Alignment explanation
Indices: 12937854--12937883 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
12937844 GTAGATTAGC
*
12937854 TCCCTCTTAAGCAG
1 TCCCTCTTAAGAAG
12937868 TCCCTCTTAAGAAG
1 TCCCTCTTAAGAAG
12937882 TC
1 TC
12937884 TTAAACAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.33, G:0.13, T:0.30
Consensus pattern (14 bp):
TCCCTCTTAAGAAG
Found at i:12939680 original size:12 final size:12
Alignment explanation
Indices: 12939653--12939681 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
12939643 TGGATTTGAT
12939653 CTTTTTTTTTTA
1 CTTTTTTTTTTA
12939665 -TTTTTTTTTTA
1 CTTTTTTTTTTA
12939676 CTTTTT
1 CTTTTT
12939682 CAATTCCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.86
Consensus pattern (12 bp):
CTTTTTTTTTTA
Found at i:12944108 original size:20 final size:20
Alignment explanation
Indices: 12944075--12944113 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
12944065 TAAAAACTAG
12944075 CATCTATTGATTTTATGGATT
1 CATCTATTGATTTT-TGGATT
*
12944096 CATC-ATTGGTTTTTGGAT
1 CATCTATTGATTTTTGGAT
12944114 CCTCAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.21, C:0.10, G:0.18, T:0.51
Consensus pattern (20 bp):
CATCTATTGATTTTTGGATT
Found at i:12948153 original size:12 final size:12
Alignment explanation
Indices: 12948136--12948160 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12948126 CCATTTACTT
12948136 TAAAGGCAAAAC
1 TAAAGGCAAAAC
12948148 TAAAGGCAAAAC
1 TAAAGGCAAAAC
12948160 T
1 T
12948161 TGGCCAAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.16, T:0.12
Consensus pattern (12 bp):
TAAAGGCAAAAC
Found at i:12953410 original size:41 final size:43
Alignment explanation
Indices: 12953299--12953423 Score: 141
Period size: 43 Copynumber: 3.0 Consensus size: 43
12953289 AGCTCGTATA
* * *
12953299 ATGCCAACTTTCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACTATCCAGACGTGGTCTTACACGAAATCAAATATCG
* *
12953342 ATGTC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATA-CG
1 ATGCCAACTAT-CCAGAC-GTGGTCTTACACGAAATCAAATATCG
* *
12953384 ATGCCAAC-ATCCAGACGTGGTCTTACACGATATCACATAT
1 ATGCCAACTATCCAGACGTGGTCTTACACGAAATCAAATAT
12953424 TGAAAATCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 11
0.78 0.09 0.12
Matches are distributed among these distances:
40 1 0.01
41 25 0.36
42 11 0.16
43 31 0.45
44 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAACTATCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:12956139 original size:15 final size:14
Alignment explanation
Indices: 12956121--12956170 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
12956111 TAGATTTATG
12956121 TTTAATTAATCAAAT
1 TTTAATTAAT-AAAT
12956136 TTTAATTAAATAAAT
1 TTTAATT-AATAAAT
*
12956151 TATAATTAATTAAAT
1 TTTAATTAA-TAAAT
*
12956166 GTTAA
1 TTTAA
12956171 CTGAAGTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 2 0.07
15 25 0.83
16 3 0.10
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (14 bp):
TTTAATTAATAAAT
Found at i:12960308 original size:45 final size:45
Alignment explanation
Indices: 12960244--12960405 Score: 222
Period size: 45 Copynumber: 3.6 Consensus size: 45
12960234 TATTGTACGG
* *
12960244 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
12960289 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
12960334 TACTATTCAGGCCTTCGAGCCTAGCAAGCTATAATGCCAGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
12960379 TGA-TA-TCGGG-CTTCGAACCTAGCAGGC
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGC
12960406 GAAATGCTGG
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
43 15 0.14
44 4 0.04
45 87 0.81
46 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:12962400 original size:42 final size:42
Alignment explanation
Indices: 12962341--12962425 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
12962331 TTCATGATTC
12962341 ATAGTGATAGAGAGAGTTTAAGCAAGACAATTGGTGATGCAT
1 ATAGTGATAGAGAGAGTTTAAGCAAGACAATTGGTGATGCAT
12962383 ATAGTGATAGAGAGAGTTTAAGCAAGACAATTGGTGATGCAT
1 ATAGTGATAGAGAGAGTTTAAGCAAGACAATTGGTGATGCAT
12962425 A
1 A
12962426 CTCTTAGATG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.39, C:0.07, G:0.28, T:0.26
Consensus pattern (42 bp):
ATAGTGATAGAGAGAGTTTAAGCAAGACAATTGGTGATGCAT
Found at i:12966338 original size:60 final size:59
Alignment explanation
Indices: 12966194--12966342 Score: 140
Period size: 60 Copynumber: 2.5 Consensus size: 59
12966184 TTGGTACCTG
* * * * * *
12966194 AACTTGCCTTCAAAGTTCAAATTGGCACCTAAGGTTTTTTCAATCCAATTAGGTACTTG
1 AACTTGACTTTAAGGTTCAAATTGGTACCTAAAGTTTTTTCAATCCAATTAGGTACTTA
* * * **
12966253 AACTTGACTTTAAGATCCAATTTGGTACCTAAAGTTTATTTTGATCCAATTAGGTA-TCTA
1 AACTTGACTTTAAGGTTCAAATTGGTACCTAAAGTTT-TTTCAATCCAATTAGGTACT-TA
* *
12966313 AACTTGGCTTCT-TGGTTCAAATTGGTACCT
1 AACTTGACTT-TAAGGTTCAAATTGGTACCT
12966343 GAACTTGGTT
Statistics
Matches: 71, Mismatches: 16, Indels: 5
0.77 0.17 0.05
Matches are distributed among these distances:
59 30 0.42
60 40 0.56
61 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (59 bp):
AACTTGACTTTAAGGTTCAAATTGGTACCTAAAGTTTTTTCAATCCAATTAGGTACTTA
Found at i:12966359 original size:31 final size:31
Alignment explanation
Indices: 12966313--12966371 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
12966303 TAGGTATCTA
* *
12966313 AACTTGGCTTCTTGGTTCAAATTGGTACCTG
1 AACTTGGCTTCTTGGTCCAAATTAGTACCTG
* *
12966344 AACTTGGTTTTTTGGTCCAAATTAGTAC
1 AACTTGGCTTCTTGGTCCAAATTAGTAC
12966372 TTATGGTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (31 bp):
AACTTGGCTTCTTGGTCCAAATTAGTACCTG
Found at i:12969843 original size:3 final size:3
Alignment explanation
Indices: 12969835--12969952 Score: 55
Period size: 3 Copynumber: 40.3 Consensus size: 3
12969825 TAACGAAAAC
* * * **
12969835 AAT AAT AAT AAT AGT AAT -AT AAAT AAT GAT AAT AGT GGT AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
12969879 -AT GAT AAT ACT AAT GAT AAT AAT AAT AAT AGT CAT -AT AAG AAT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
12969925 AAT ATT AGT AAT AAT AAG AAT GAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
12969953 CAAATAATGC
Statistics
Matches: 83, Mismatches: 27, Indels: 10
0.69 0.22 0.08
Matches are distributed among these distances:
2 8 0.10
3 73 0.88
4 2 0.02
ACGTcount: A:0.55, C:0.02, G:0.10, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:12970335 original size:20 final size:21
Alignment explanation
Indices: 12970305--12970360 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
12970295 CATAATATGT
*
12970305 ACATGATATATAAAAATATA-
1 ACATAATATATAAAAATATAG
* *
12970325 TCATAATATATTAAAATATAG
1 ACATAATATATAAAAATATAG
*
12970346 ACATAATATACAAAA
1 ACATAATATATAAAA
12970361 TAAAAAAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (21 bp):
ACATAATATATAAAAATATAG
Found at i:12970432 original size:13 final size:13
Alignment explanation
Indices: 12970405--12970441 Score: 51
Period size: 11 Copynumber: 3.0 Consensus size: 13
12970395 AAAAGAACGA
*
12970405 ATATACATAATAT
1 ATATACGTAATAT
12970418 AT-TAC-TAATAT
1 ATATACGTAATAT
12970429 ATATACGTAATAT
1 ATATACGTAATAT
12970442 GGAGTATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 8 0.36
12 6 0.27
13 8 0.36
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (13 bp):
ATATACGTAATAT
Found at i:12973517 original size:23 final size:23
Alignment explanation
Indices: 12973487--12973533 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
12973477 TATTACTAAC
12973487 TCAGCATTTAGAAAGTCACATAG
1 TCAGCATTTAGAAAGTCACATAG
12973510 TCAGCATTTAGAAAGTCACATAG
1 TCAGCATTTAGAAAGTCACATAG
12973533 T
1 T
12973534 AAATGGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (23 bp):
TCAGCATTTAGAAAGTCACATAG
Found at i:12974036 original size:14 final size:14
Alignment explanation
Indices: 12973995--12974032 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
12973985 AATAAAAAAT
12973995 ATATAAAATCATTAA
1 ATATAAAAT-ATTAA
*
12974010 ATATTAAATATTAA
1 ATATAAAATATTAA
12974024 A-ATAAAATA
1 ATATAAAATA
12974033 ATTATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 7 0.33
14 6 0.29
15 8 0.38
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (14 bp):
ATATAAAATATTAA
Found at i:12975662 original size:23 final size:22
Alignment explanation
Indices: 12975636--12975703 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 22
12975626 TTGATTTTGT
12975636 TTTTATAGAAGTATTTAAATTTA
1 TTTTATA-AAGTATTTAAATTTA
* * *
12975659 TTTTCAAAAATTATTTAAATCTA
1 TTTT-ATAAAGTATTTAAATTTA
*
12975682 TTTT-TAAACGTATTAAAATTTA
1 TTTTATAAA-GTATTTAAATTTA
12975704 AATTTTTTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
21 3 0.08
22 10 0.28
23 21 0.58
24 2 0.06
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (22 bp):
TTTTATAAAGTATTTAAATTTA
Found at i:12981502 original size:12 final size:12
Alignment explanation
Indices: 12981485--12981523 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
12981475 CAAAACAAAA
12981485 TAAATAAAAAGG
1 TAAATAAAAAGG
*
12981497 TAAATAAATA-G
1 TAAATAAAAAGG
*
12981508 AAAATAAAAAGG
1 TAAATAAAAAGG
12981520 TAAA
1 TAAA
12981524 AGGGGTGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.69, C:0.00, G:0.13, T:0.18
Consensus pattern (12 bp):
TAAATAAAAAGG
Found at i:12986524 original size:95 final size:95
Alignment explanation
Indices: 12986361--12986553 Score: 386
Period size: 95 Copynumber: 2.0 Consensus size: 95
12986351 TTTGTATTGA
12986361 ATCATATTATATGAAGAACTGTGCTGCTTCCTCGTCTAATGAAATTTTAATTTGTCAAATTGTTG
1 ATCATATTATATGAAGAACTGTGCTGCTTCCTCGTCTAATGAAATTTTAATTTGTCAAATTGTTG
12986426 GGCGCAGGGGTCCTTGTTTCAATGCTAAGG
66 GGCGCAGGGGTCCTTGTTTCAATGCTAAGG
12986456 ATCATATTATATGAAGAACTGTGCTGCTTCCTCGTCTAATGAAATTTTAATTTGTCAAATTGTTG
1 ATCATATTATATGAAGAACTGTGCTGCTTCCTCGTCTAATGAAATTTTAATTTGTCAAATTGTTG
12986521 GGCGCAGGGGTCCTTGTTTCAATGCTAAGG
66 GGCGCAGGGGTCCTTGTTTCAATGCTAAGG
12986551 ATC
1 ATC
12986554 CTAACCAAAG
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 98 1.00
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (95 bp):
ATCATATTATATGAAGAACTGTGCTGCTTCCTCGTCTAATGAAATTTTAATTTGTCAAATTGTTG
GGCGCAGGGGTCCTTGTTTCAATGCTAAGG
Found at i:12987717 original size:18 final size:17
Alignment explanation
Indices: 12987689--12987723 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
12987679 ATTATTAAGA
*
12987689 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
12987706 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
12987724 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:12987871 original size:157 final size:157
Alignment explanation
Indices: 12987677--12987993 Score: 598
Period size: 157 Copynumber: 2.0 Consensus size: 157
12987667 ATAAGAATAT
12987677 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
12987742 AAATATAATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATAATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
12987807 TAATAATTTACCAAAACAAATTTTTGC
131 TAATAATTTACCAAAACAAATTTCTGC
12987834 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
12987899 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATAATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
12987964 TAATCATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTCTGC
12987991 TAA
1 TAA
12987994 GGGTATTCTA
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
157 156 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATAATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTCTGC
Found at i:12987874 original size:18 final size:17
Alignment explanation
Indices: 12987846--12987880 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
12987836 ATTATTAAGA
*
12987846 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
12987863 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
12987881 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:12988134 original size:16 final size:16
Alignment explanation
Indices: 12988113--12988151 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
12988103 TTGATTTGCT
*
12988113 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
12988129 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
12988145 ATTACAC
1 ATTACAC
12988152 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:12988152 original size:16 final size:16
Alignment explanation
Indices: 12988125--12988166 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
12988115 TACACAGCTT
12988125 TTCCATTACACCTCTA
1 TTCCATTACACCTCTA
12988141 TTCCATTACACCTCTA
1 TTCCATTACACCTCTA
* *
12988157 ATCCAATACA
1 TTCCATTACA
12988167 GCGAACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
TTCCATTACACCTCTA
Found at i:12995234 original size:41 final size:41
Alignment explanation
Indices: 12995189--12995317 Score: 143
Period size: 41 Copynumber: 3.1 Consensus size: 41
12995179 TTTATGAGGG
* * *
12995189 AAACGCCACAAAAGGTCTAACATTAGCGGCATTTATGATAA
1 AAACGCCACAAAAGGTCCAGCATTAGCGGCGTTTATGATAA
** * * *
12995230 AAACGCTGCAAAAAGTCCAGCATTAGCGACGTTTATGAGAA
1 AAACGCCACAAAAGGTCCAGCATTAGCGGCGTTTATGATAA
* * *
12995271 AAATG-CAGTAAAAGGTCCAGCATTAGCGGCGTTTATGCTAA
1 AAACGCCA-CAAAAGGTCCAGCATTAGCGGCGTTTATGATAA
12995312 AAACGC
1 AAACGC
12995318 TGCAAAAAAC
Statistics
Matches: 69, Mismatches: 17, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (41 bp):
AAACGCCACAAAAGGTCCAGCATTAGCGGCGTTTATGATAA
Found at i:12999552 original size:25 final size:25
Alignment explanation
Indices: 12999524--12999572 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
12999514 TTGAAGTATA
*
12999524 ATTTGTATTTGCTATTTTTGGTTGG
1 ATTTGTATTTACTATTTTTGGTTGG
* *
12999549 ATTTGTATTTATTGTTTTTGGTTG
1 ATTTGTATTTACTATTTTTGGTTG
12999573 TTACAAGAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.12, C:0.02, G:0.22, T:0.63
Consensus pattern (25 bp):
ATTTGTATTTACTATTTTTGGTTGG
Found at i:12999774 original size:43 final size:43
Alignment explanation
Indices: 12999703--12999866 Score: 163
Period size: 43 Copynumber: 3.8 Consensus size: 43
12999693 TAAAGTTTAC
* *
12999703 GTTCTATAGCAGCGTTTGTATG-G-AAAGCGCCGCTAAAGGTCAC
1 GTTCTATAGCGGCG-TT-TATGAGAAAAGCGCCGCTAAAGGTCAT
* * * * *
12999746 GTTCTATAACGGCGATTATGAGATAAGCGCCACCAAAGGTCAT
1 GTTCTATAGCGGCGTTTATGAGAAAAGCGCCGCTAAAGGTCAT
* * * **
12999789 GTTCTATAGCGGCGTTTTTCA-AAAAGCTCCGCTAAAAATCAT
1 GTTCTATAGCGGCGTTTATGAGAAAAGCGCCGCTAAAGGTCAT
* *
12999831 GTTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAA
1 GTTCTATAGCGGCGTTTATGAGAAAAGCGCCGCTAA
12999867 GCAAATATTT
Statistics
Matches: 97, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 4 0.04
42 35 0.36
43 58 0.60
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (43 bp):
GTTCTATAGCGGCGTTTATGAGAAAAGCGCCGCTAAAGGTCAT
Found at i:13001125 original size:20 final size:20
Alignment explanation
Indices: 13001075--13001117 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
13001065 ATTAGTTTGT
13001075 TATGAAATTGTCATTAACAC
1 TATGAAATTGTCATTAACAC
*
13001095 TATGAAATTGTCATTAACGC
1 TATGAAATTGTCATTAACAC
13001115 TAT
1 TAT
13001118 CGATTTGTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (20 bp):
TATGAAATTGTCATTAACAC
Found at i:13001685 original size:46 final size:47
Alignment explanation
Indices: 13001602--13001720 Score: 115
Period size: 48 Copynumber: 2.5 Consensus size: 47
13001592 AATAAGAGAC
*
13001602 AATTTTTTATTTTATAATTTATTAGAATGTTTATAAAT-TTTTATGA
1 AATTTTTTATTTTATAATTTATTAGAATGTGTATAAATGTTTTATGA
13001648 AATTTTTTACTTTTATAAGTTTATATA-AAT-TGT-TAAATGTTTT-T-A
1 AATTTTTTA-TTTTATAA-TTTAT-TAGAATGTGTATAAATGTTTTATGA
13001693 ATATGTTTTATTATTTTTATAATTTATT
1 A-A--TTTT-TTA-TTTTATAATTTATT
13001721 TGAAAAACCT
Statistics
Matches: 63, Mismatches: 2, Indels: 15
0.79 0.03 0.19
Matches are distributed among these distances:
45 2 0.03
46 16 0.25
47 15 0.24
48 17 0.27
49 13 0.21
ACGTcount: A:0.33, C:0.01, G:0.06, T:0.61
Consensus pattern (47 bp):
AATTTTTTATTTTATAATTTATTAGAATGTGTATAAATGTTTTATGA
Found at i:13001962 original size:150 final size:154
Alignment explanation
Indices: 13001794--13002088 Score: 427
Period size: 162 Copynumber: 1.9 Consensus size: 154
13001784 AATATTTTTA
13001794 TAATATTTTCACGTTTTCTTACTATTTTATTAGAAAAACAAAAG-A-T-T-ACCTCCTAATTGAC
1 TAATATTTTCACGTTTTCTTACTATTTTATTAGAAAAACAAAAGAAGTATGACCTCCTAATTGAC
* *
13001855 CCATCAGTTAATTTTAAAAATTAAACTGATGAAAGACGAAAATTATTAATAGCTATATTGGATTT
66 CCATCAGTTAATTTTAAAAATTAAACTGATGAAAGACGAAAATTATTAATAGCTACATTGAATTT
13001920 ATTTTATAAGATTATATAAAATTT
131 ATTTTATAAGATTATATAAAATTT
* *
13001944 TAATATTTTTATGTTTTCTTACTATTTTATTAGAAAAACAAAAGATTAAGTTAGAGATGACCTCC
1 TAATATTTTCACGTTTTCTTACTATTTTATTAGAAAAACAAAAG---AAG-T----ATGACCTCC
* *
13002009 TAATTGACCCATCAGTTGATTTTAAAAATTAAAGTGATGAAAGACGAAAATTATTAATAGCTACA
58 TAATTGACCCATCAGTTAATTTTAAAAATTAAACTGATGAAAGACGAAAATTATTAATAGCTACA
*
13002074 TTGAATTTTTTTTAT
123 TTGAATTTATTTTAT
13002089 TAACAATAAG
Statistics
Matches: 126, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
150 42 0.33
154 1 0.01
156 1 0.01
161 1 0.01
162 81 0.64
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (154 bp):
TAATATTTTCACGTTTTCTTACTATTTTATTAGAAAAACAAAAGAAGTATGACCTCCTAATTGAC
CCATCAGTTAATTTTAAAAATTAAACTGATGAAAGACGAAAATTATTAATAGCTACATTGAATTT
ATTTTATAAGATTATATAAAATTT
Found at i:13004629 original size:4 final size:4
Alignment explanation
Indices: 13004620--13004654 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
13004610 TAGACAACTA
13004620 TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT
13004655 CATATTTCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:13005516 original size:21 final size:20
Alignment explanation
Indices: 13005487--13005534 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
13005477 GAATATTTTT
13005487 AAATT-TTTAACTTTCTTTA
1 AAATTATTTAACTTTCTTTA
* * *
13005506 TATATTATTTAATTTTTTTTA
1 -AAATTATTTAACTTTCTTTA
13005527 AAATTATT
1 AAATTATT
13005535 AAATATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (20 bp):
AAATTATTTAACTTTCTTTA
Found at i:13005534 original size:20 final size:20
Alignment explanation
Indices: 13005482--13005550 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
13005472 TGTTAGAATA
*
13005482 TTTTT-AAATT-TTTAACTT
1 TTTTTAAAATTATTTAATTT
* *
13005500 TCTTTATATATTATTTAATTT
1 TTTTTA-AAATTATTTAATTT
* *
13005521 TTTTTAAAATTATTAAATAT
1 TTTTTAAAATTATTTAATTT
*
13005541 TTTTAAAAAT
1 TTTTTAAAAT
13005551 ATAATTTTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
18 4 0.10
20 24 0.60
21 12 0.30
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTTAAAATTATTTAATTT
Found at i:13008735 original size:24 final size:25
Alignment explanation
Indices: 13008685--13008735 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
13008675 GTGCTTTAAT
*
13008685 AAAAAAATTATATAGTTAATTGAGAC
1 AAAAAAATTATATACTTAATT-AGAC
*
13008711 AAAAAATTTATATACTTAATT-GAC
1 AAAAAAATTATATACTTAATTAGAC
13008735 A
1 A
13008736 TTGAAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
26 19 0.83
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (25 bp):
AAAAAAATTATATACTTAATTAGAC
Found at i:13008868 original size:20 final size:20
Alignment explanation
Indices: 13008843--13008880 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13008833 CAAATTGGGA
13008843 TAAAATAAA-ACTTAAAATAC
1 TAAAATAAACA-TTAAAATAC
13008863 TAAAATAAACATTAAAAT
1 TAAAATAAACATTAAAAT
13008881 TAAATACAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (20 bp):
TAAAATAAACATTAAAATAC
Found at i:13027670 original size:56 final size:56
Alignment explanation
Indices: 13027584--13027696 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
13027574 TCGTTTGGTA
*
13027584 TGTATTATTCTTTGAGCTCCTGAATTCAAATATAACTGTGATTCCTTGATTACATG
1 TGTATTATTCTTTGAGCTCCTGAATCCAAATATAACTGTGATTCCTTGATTACATG
* *
13027640 TGTATTATTCTTTGAGCTTCTGAATCCAAATATAACTGTGATTCCTTGATTTCATG
1 TGTATTATTCTTTGAGCTCCTGAATCCAAATATAACTGTGATTCCTTGATTACATG
13027696 T
1 T
13027697 ATAAACTGTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (56 bp):
TGTATTATTCTTTGAGCTCCTGAATCCAAATATAACTGTGATTCCTTGATTACATG
Found at i:13032935 original size:18 final size:18
Alignment explanation
Indices: 13032914--13033012 Score: 94
Period size: 18 Copynumber: 5.5 Consensus size: 18
13032904 TAATAATCAG
* *
13032914 TTATTCAGTAACGGTCGT
1 TTATTCAGTAACAGTCGA
* * *
13032932 TTATTCATTATCAGTCAA
1 TTATTCAGTAACAGTCGA
** *
13032950 TTATTCAGTAGTAGT-TA
1 TTATTCAGTAACAGTCGA
13032967 GTTATTCAGTAACAGTC-A
1 -TTATTCAGTAACAGTCGA
13032985 TTGATTCAGTAACAGTCGA
1 TT-ATTCAGTAACAGTCGA
13033004 TTATTCAGT
1 TTATTCAGT
13033013 GGCAGTTAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
17 3 0.05
18 60 0.91
19 3 0.05
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.40
Consensus pattern (18 bp):
TTATTCAGTAACAGTCGA
Found at i:13032974 original size:54 final size:54
Alignment explanation
Indices: 13032912--13033030 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 54
13032902 AGTAATAATC
* * * * * *
13032912 AGTTATTCAGTAACGGTCGTTTATTCATTATCAGTCAATTATTCAGTAGTAGTT
1 AGTTATTCAGTAACAGTCATTGATTCAGTAACAGTCAATTATTCAGTAGCAGTT
* *
13032966 AGTTATTCAGTAACAGTCATTGATTCAGTAACAGTCGATTATTCAGTGGCAGTT
1 AGTTATTCAGTAACAGTCATTGATTCAGTAACAGTCAATTATTCAGTAGCAGTT
*
13033020 AATT-TTCAGTA
1 AGTTATTCAGTA
13033031 TCTTTATTTA
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
53 7 0.12
54 49 0.88
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.39
Consensus pattern (54 bp):
AGTTATTCAGTAACAGTCATTGATTCAGTAACAGTCAATTATTCAGTAGCAGTT
Found at i:13033018 original size:18 final size:17
Alignment explanation
Indices: 13032882--13033012 Score: 93
Period size: 18 Copynumber: 7.4 Consensus size: 17
13032872 ATCTTTATTG
* *
13032882 TTCAGTATCAGTCAGTCA
1 TTCAGTAACAGTCA-TTA
* *
13032900 TT-AGTAATAATCAGTTA
1 TTCAGTAACAGTCA-TTA
* *
13032917 TTCAGTAACGGTCGTTTA
1 TTCAGTAACAGTC-ATTA
* *
13032935 TTCATTATCAGTCAATTA
1 TTCAGTAACAGTC-ATTA
** *
13032953 TTCAGTAGTAGTTAGTTA
1 TTCAGTAACAGTCA-TTA
13032971 TTCAGTAACAGTCATTGA
1 TTCAGTAACAGTCATT-A
13032989 TTCAGTAACAGTCGATTA
1 TTCAGTAACAGTC-ATTA
13033007 TTCAGT
1 TTCAGT
13033013 GGCAGTTAAT
Statistics
Matches: 88, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
17 16 0.18
18 69 0.78
19 3 0.03
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.39
Consensus pattern (17 bp):
TTCAGTAACAGTCATTA
Found at i:13038215 original size:26 final size:26
Alignment explanation
Indices: 13038179--13038247 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
13038169 TTAAGTTCAA
13038179 TGAGCTTCCTGTTT-AAAGACTCTTCG
1 TGAGCTTCCTGTTTAAAAG-CTCTTCG
* * *
13038205 TGAGCTTCCTGATTAAAAGTTCTTTG
1 TGAGCTTCCTGTTTAAAAGCTCTTCG
* *
13038231 TGAACTTCCTGTATAAA
1 TGAGCTTCCTGTTTAAA
13038248 CTCTTATGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
26 32 0.89
27 4 0.11
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (26 bp):
TGAGCTTCCTGTTTAAAAGCTCTTCG
Found at i:13040667 original size:25 final size:25
Alignment explanation
Indices: 13040638--13040691 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
13040628 TTAATCCTTA
*
13040638 TTAAATCTAATCCTAAGTTCTAAAC
1 TTAAATCTAATCCGAAGTTCTAAAC
* *
13040663 TTAAATCTAATTCGAAGTTTTAAAC
1 TTAAATCTAATCCGAAGTTCTAAAC
13040688 TTAA
1 TTAA
13040692 GTTCTAAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.39
Consensus pattern (25 bp):
TTAAATCTAATCCGAAGTTCTAAAC
Found at i:13042092 original size:20 final size:20
Alignment explanation
Indices: 13042067--13042111 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
13042057 ACTCACAAGA
*
13042067 TGTATGGATAGAAA-TGGACT
1 TGTATGGATA-AAAGTGAACT
13042087 TGTATGGATAAAAGTGAACT
1 TGTATGGATAAAAGTGAACT
13042107 TGTAT
1 TGTAT
13042112 CAATATAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.33
Consensus pattern (20 bp):
TGTATGGATAAAAGTGAACT
Found at i:13049724 original size:10 final size:10
Alignment explanation
Indices: 13049689--13049727 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
13049679 TTAGGGTTTA
*
13049689 ATATTTATTT
1 ATATTTAATT
*
13049699 ATAATTAATT
1 ATATTTAATT
13049709 ATTATTTAATT
1 A-TATTTAATT
13049720 ATATTTAA
1 ATATTTAA
13049728 ATAAAGTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
ATATTTAATT
Found at i:13059925 original size:15 final size:14
Alignment explanation
Indices: 13059905--13059934 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
13059895 TCCAAATGAG
13059905 TTCTTTTTTTCTTTT
1 TTCTTTTTTT-TTTT
13059920 TTCTTTTTTTTTTT
1 TTCTTTTTTTTTTT
13059934 T
1 T
13059935 ACAAAAGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTCTTTTTTTTTTT
Found at i:13060043 original size:31 final size:31
Alignment explanation
Indices: 13060008--13060076 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
13059998 TATTTTTTTT
*
13060008 ATTTAATTGTGATATATTAACTAATATGGTA
1 ATTTAATTGGGATATATTAACTAATATGGTA
* * *
13060039 ATTTAATTGGGATGTATTAACTATTGTGGTA
1 ATTTAATTGGGATATATTAACTAATATGGTA
13060070 ATTTAAT
1 ATTTAAT
13060077 ATGGTTAAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (31 bp):
ATTTAATTGGGATATATTAACTAATATGGTA
Found at i:13062597 original size:46 final size:46
Alignment explanation
Indices: 13062547--13062716 Score: 184
Period size: 47 Copynumber: 3.7 Consensus size: 46
13062537 AACGAGAGCT
* * *
13062547 AGTGTAAGA-TATGTTTGGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGG-CTCGAGATGTAAGCC
* * *
13062593 AGTGTAGGA-CATGTCTGGAACATGCATCGGCTACGAGATG-ATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCT-CGAGATGTA-AGCC
* ** *
13062639 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTCGAGATGTAAGCC
13062686 AGTGTAAGACCATGTCTGGGACATGACATCG
1 AGTGTAAGACCATGTCTGGGACATG-CATCG
13062717 ACACTTTACC
Statistics
Matches: 105, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
45 3 0.03
46 44 0.42
47 50 0.48
48 8 0.08
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGATGTAAGCC
Found at i:13062679 original size:47 final size:47
Alignment explanation
Indices: 13062453--13062718 Score: 165
Period size: 47 Copynumber: 5.7 Consensus size: 47
13062443 TTATTTGGCT
** * * *
13062453 AGTGTAAGA-CATGTCTGAAACAT-GCATCGACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTACA-GATGTGAGCC
* ** * * ** * * *
13062499 AGTGAAAGATTATGTCTGGGTCATGGCATCGGCATTTTA-ACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTACAGATGTGAGCC
* * * * *
13062547 AGTGTAAGA-TATGTTTGGGACAT-GCATCGGCCT-CGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTAC-AGATGTGAGCC
* * * *
13062593 AGTGTAGGA-CATGTCTGGAACAT-GCATCGGCTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTAC-AGATG-TGAGCC
13062639 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTA-AGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TACAGATGTGAGCC
*
13062686 AGTGTAAGACCATGTCTGGGACATGACATCGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
13062719 ACTTTACCTA
Statistics
Matches: 176, Mismatches: 32, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
45 5 0.03
46 63 0.36
47 76 0.43
48 27 0.15
49 3 0.02
50 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTACAGATGTGAGCC
Found at i:13062706 original size:140 final size:141
Alignment explanation
Indices: 13062453--13062716 Score: 311
Period size: 140 Copynumber: 1.9 Consensus size: 141
13062443 TTATTTGGCT
* **
13062453 AGTGTAAGACATGTCTGAAACATGCATCGACCACATTATGAGAGCCAGTGAAAGATTATGTCTGG
1 AGTGTAAGACATGTCTGAAACATGCATCGACCACATGATGAGAGCCAGTGAAAGACCATGTCTGG
* * * * * *
13062518 GTCATGGCATCGGCATTTTAACGAGAGCTAGTGTAAGATATGTTTGGGACATG-CATCGGCCTCG
66 GACATGGCATCGGCACTTAAACGAGAGCCAGTGTAAGACATGTCTGGGACATGACATCGGCCTCG
13062582 AGACGTAAGCC
131 AGACGTAAGCC
* * * * * * *
13062593 AGTGTAGGACATGTCTGGAACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGAAACATGCATCGACCAC-ATGATGAGAGCCAGTGAAAGACCATGTCTG
* *
13062657 GGACATGGCATC-G-ACTTAAGATGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATCG
65 GGACATGGCATCGGCACTTAA-ACGAGAGCCAGTGTAAGA-CATGTCTGGGACATGACATCG
13062717 ACACTTTACC
Statistics
Matches: 102, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
138 4 0.04
139 16 0.16
140 76 0.75
141 6 0.06
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGAAACATGCATCGACCACATGATGAGAGCCAGTGAAAGACCATGTCTGG
GACATGGCATCGGCACTTAAACGAGAGCCAGTGTAAGACATGTCTGGGACATGACATCGGCCTCG
AGACGTAAGCC
Found at i:13062982 original size:37 final size:37
Alignment explanation
Indices: 13062932--13063006 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
13062922 TTTGGTATCA
* *
13062932 TGAGCATGTAGATCATTGATAAAATGTTATTGTTGTG
1 TGAGCATGTAGATCATTGATAAAATGTTACTATTGTG
13062969 TGAGCATGTAGATCATTGATAAAATGTTACTATTGTG
1 TGAGCATGTAGATCATTGATAAAATGTTACTATTGTG
13063006 T
1 T
13063007 ACTTACTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.40
Consensus pattern (37 bp):
TGAGCATGTAGATCATTGATAAAATGTTACTATTGTG
Found at i:13069566 original size:15 final size:15
Alignment explanation
Indices: 13069528--13069571 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
13069518 CATAGTATCG
* *
13069528 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTC
13069543 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
13069558 TATCTTGGATTTCT
1 TATCTTGGATTTCT
13069572 TTATTCGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:13069593 original size:30 final size:30
Alignment explanation
Indices: 13069528--13069584 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
13069518 CATAGTATCG
*
13069528 TATCTTGGGTTTCTTTATTCTGGATTTCTC
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
13069558 TATCTTGGATTTCTTTATTC-GG-TTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
13069585 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 5 0.19
29 2 0.08
30 19 0.73
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.58
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:13071542 original size:46 final size:46
Alignment explanation
Indices: 13071492--13071667 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
13071482 TGGTTGAGCA
*
13071492 TCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * * * * *
13071538 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGTCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAAT-G
* * * *
13071585 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
13071631 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
13071668 GCGGTTACAT
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
46 68 0.67
47 34 0.33
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:13073383 original size:3 final size:3
Alignment explanation
Indices: 13073370--13073405 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
13073360 GTCACATTGC
*
13073370 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
13073406 GTCTTGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:13079709 original size:5 final size:5
Alignment explanation
Indices: 13079699--13079724 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
13079689 ATTTTAAGAA
13079699 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
13079725 TAGAAGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:13084398 original size:46 final size:49
Alignment explanation
Indices: 13084342--13084507 Score: 199
Period size: 49 Copynumber: 3.6 Consensus size: 49
13084332 ATATGCTTCT
* * * *
13084342 GTGTAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGA-TCC
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTAC
*
13084388 GTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTAC
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTAC
*
13084437 GTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGA-A--T-A-T--
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTAC
*
13084479 GTGTAAGACCATAGCTGGGCTATGACATC
1 GTGTAAGACCATAGCTGGGCTATGGCATC
13084508 ATTATGTGAA
Statistics
Matches: 111, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
42 28 0.25
44 1 0.01
45 1 0.01
46 28 0.25
47 1 0.01
48 12 0.11
49 40 0.36
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (49 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTAC
Found at i:13084483 original size:42 final size:42
Alignment explanation
Indices: 13084424--13084549 Score: 173
Period size: 42 Copynumber: 3.0 Consensus size: 42
13084414 ATCGATATGT
* *
13084424 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
*
13084466 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
* * **
13084508 -ATTATGTGAAGATGTGTAAGACCATAGTTGAACTATGGCATC
1 GA-TATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
13084550 AAGAAAATGA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
41 1 0.01
42 74 0.99
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:13084514 original size:91 final size:91
Alignment explanation
Indices: 13084342--13084516 Score: 237
Period size: 91 Copynumber: 1.9 Consensus size: 91
13084332 ATATGCTTCT
* *
13084342 GTGTAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATCCGTGTAAGACCATAGCTGGG
1 GTGTAAGACCATAGCTGGGATATGGCATC----AGATATGTGATACGTGTAAGACCATAGCTGGG
*
13084407 CTATGGCATCGATATGTGATATGTGATTAC
62 CTATGACATCGATATGTGATATGTGATTAC
* *
13084437 GTGTAAGACCATAGCTGGGCTATGGCATC-GATATGTGAATATGTGTAAGACCATAGCTGGGCTA
1 GTGTAAGACCATAGCTGGGATATGGCATCAGATATGTG-ATACGTGTAAGACCATAGCTGGGCTA
13084501 TGACATC-ATTATGTGA
65 TGACATCGA-TATGTGA
13084517 AGATGTGTAA
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
90 9 0.12
91 37 0.51
95 27 0.37
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (91 bp):
GTGTAAGACCATAGCTGGGATATGGCATCAGATATGTGATACGTGTAAGACCATAGCTGGGCTAT
GACATCGATATGTGATATGTGATTAC
Found at i:13086808 original size:20 final size:21
Alignment explanation
Indices: 13086770--13086818 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
13086760 GTAAACGTAC
**
13086770 AAAAAATTAATATTTAATTGT
1 AAAAAATTAATATAAAATTGT
*
13086791 AAAAAATTAATA-AAAATTTT
1 AAAAAATTAATATAAAATTGT
13086811 AAAAAATT
1 AAAAAATT
13086819 GACTAATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AAAAAATTAATATAAAATTGT
Found at i:13087438 original size:20 final size:21
Alignment explanation
Indices: 13087398--13087441 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
13087388 TCAAAATGAC
*
13087398 TTTAATTATATTTTGAGTTTT
1 TTTAATTATATTTTGAATTTT
*
13087419 TTTAATTA-ATTTTTAATTTT
1 TTTAATTATATTTTGAATTTT
13087439 TTT
1 TTT
13087442 TTCAAACTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (21 bp):
TTTAATTATATTTTGAATTTT
Found at i:13087442 original size:21 final size:21
Alignment explanation
Indices: 13087398--13087442 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
13087388 TCAAAATGAC
*
13087398 TTTAATTATATTTTGAGTTTT
1 TTTAATTATATTTTAAGTTTT
*
13087419 TTTAATTA-ATTTTTAATTTTT
1 TTTAATTATA-TTTTAAGTTTT
13087440 TTT
1 TTT
13087443 TCAAACTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (21 bp):
TTTAATTATATTTTAAGTTTT
Found at i:13087595 original size:18 final size:19
Alignment explanation
Indices: 13087572--13087618 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
13087562 TATTGAGAAG
* *
13087572 TTTTTTTAATGAGTTA-AT
1 TTTTTTTAATAAATTATAT
* *
13087590 TTTTTTAAAAAAATTATAT
1 TTTTTTTAATAAATTATAT
13087609 TTTTTTTAAT
1 TTTTTTTAAT
13087619 TTAATATATC
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (19 bp):
TTTTTTTAATAAATTATAT
Found at i:13101063 original size:15 final size:15
Alignment explanation
Indices: 13101043--13101072 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13101033 CATTTTATTT
*
13101043 ATATTAGGATAATTA
1 ATATTAAGATAATTA
13101058 ATATTAAGATAATTA
1 ATATTAAGATAATTA
13101073 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:13104474 original size:6 final size:6
Alignment explanation
Indices: 13104463--13104539 Score: 78
Period size: 6 Copynumber: 13.5 Consensus size: 6
13104453 AGGTAACCTA
13104463 ATTTTT ATTTTT A-TTTT A-TTTT A-TTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
13104508 A--TTT A-TTTT ATCTTATT A-TTTT ATTATTT ATT
1 ATTTTT ATTTTT AT-TT-TT ATTTTT ATT-TTT ATT
13104540 ATTTTCAGAT
Statistics
Matches: 64, Mismatches: 0, Indels: 13
0.83 0.00 0.17
Matches are distributed among these distances:
4 4 0.06
5 22 0.34
6 27 0.42
7 8 0.12
8 3 0.05
ACGTcount: A:0.21, C:0.01, G:0.00, T:0.78
Consensus pattern (6 bp):
ATTTTT
Found at i:13104479 original size:5 final size:5
Alignment explanation
Indices: 13104465--13104532 Score: 70
Period size: 5 Copynumber: 13.4 Consensus size: 5
13104455 GTAACCTAAT
13104465 TTTTA TTTTTA TTTTA TTTTA TTTTA TTTTTA TTTTTA TTTT- TATTTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTTA T-TTTA
*
13104513 TTTTA TCTTA --TTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TT
13104533 ATTTATTATT
Statistics
Matches: 56, Mismatches: 1, Indels: 11
0.82 0.01 0.16
Matches are distributed among these distances:
3 3 0.05
4 1 0.02
5 35 0.62
6 17 0.30
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:13104490 original size:21 final size:21
Alignment explanation
Indices: 13104465--13104539 Score: 86
Period size: 21 Copynumber: 3.6 Consensus size: 21
13104455 GTAACCTAAT
13104465 TTTTATTTTTATTTTATTTTA
1 TTTTATTTTTATTTTATTTTA
13104486 TTTTATTTTTATTTTTATTTT-
1 TTTTATTTTTA-TTTTATTTTA
*
13104507 TATTTA-TTTTATCTTA--TTA
1 T-TTTATTTTTATTTTATTTTA
13104526 TTTTATTATTTATT
1 TTTTATT-TTTATT
13104540 ATTTTCAGAT
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
18 6 0.13
19 2 0.04
20 9 0.19
21 17 0.36
22 13 0.28
ACGTcount: A:0.20, C:0.01, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTATTTTTATTTTATTTTA
Found at i:13104501 original size:27 final size:27
Alignment explanation
Indices: 13104463--13104544 Score: 107
Period size: 27 Copynumber: 3.0 Consensus size: 27
13104453 AGGTAACCTA
13104463 ATTTTTATTTTTA-TTTTATTTTATTTT
1 ATTTTTATTTTTATTTTTA-TTTATTTT
13104490 ATTTTTATTTTTATTTTTATTTATTTT
1 ATTTTTATTTTTATTTTTATTTATTTT
13104517 ATCTTATTA-TTTTATTATTTA-TTATTTT
1 AT-TT-TTATTTTTATT-TTTATTTATTTT
13104545 CAGATATTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
27 23 0.45
28 21 0.41
29 7 0.14
ACGTcount: A:0.21, C:0.01, G:0.00, T:0.78
Consensus pattern (27 bp):
ATTTTTATTTTTATTTTTATTTATTTT
Found at i:13107225 original size:22 final size:21
Alignment explanation
Indices: 13107191--13107231 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
13107181 CCAATCCCAT
*
13107191 GCATCAGTTAATAACAACATG
1 GCATCAGTAAATAACAACATG
13107212 GCATGCAGTAAATAACAACA
1 GCAT-CAGTAAATAACAACA
13107232 GTCAAACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.46, C:0.20, G:0.15, T:0.20
Consensus pattern (21 bp):
GCATCAGTAAATAACAACATG
Found at i:13108812 original size:26 final size:26
Alignment explanation
Indices: 13108782--13108859 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
13108772 TGAAATTCCC
13108782 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
13108808 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
13108834 ATCATGAAACATTTACTTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
13108860 TTCAATTTGT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:13109247 original size:20 final size:19
Alignment explanation
Indices: 13109217--13109260 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
13109207 ATTTTCAGAG
* *
13109217 TTTATTTTAATTATATTTA
1 TTTATTTTAATTAAATGTA
13109236 TTTATATTTAATTAAATGTA
1 TTTAT-TTTAATTAAATGTA
13109256 TTTAT
1 TTTAT
13109261 CTTTTTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTATTTTAATTAAATGTA
Found at i:13110165 original size:12 final size:12
Alignment explanation
Indices: 13110148--13110180 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
13110138 CTACTTCCCA
13110148 TTTACTATTATT
1 TTTACTATTATT
13110160 TTTACTATTATT
1 TTTACTATTATT
*
13110172 TTAACTATT
1 TTTACTATT
13110181 TTACAGGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTACTATTATT
Found at i:13111807 original size:59 final size:60
Alignment explanation
Indices: 13111715--13111830 Score: 189
Period size: 59 Copynumber: 1.9 Consensus size: 60
13111705 CTAATTCTTC
*
13111715 GTATAGAAATGCACTCTTTCCATCAAATTTCCATAGTTTCCAACC-TTCAAAGTAGCTTT
1 GTATAGAAATACACTCTTTCCATCAAATTTCCATAGTTTCCAACCTTTCAAAGTAGCTTT
* * *
13111774 GTATAGAAATATATTCTTTCCATCAAGTTTCCATAGTTTCCAACCTTTCAAAGTAGC
1 GTATAGAAATACACTCTTTCCATCAAATTTCCATAGTTTCCAACCTTTCAAAGTAGC
13111831 AAGCGAAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
59 41 0.79
60 11 0.21
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.36
Consensus pattern (60 bp):
GTATAGAAATACACTCTTTCCATCAAATTTCCATAGTTTCCAACCTTTCAAAGTAGCTTT
Found at i:13113269 original size:29 final size:30
Alignment explanation
Indices: 13113222--13113289 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
13113212 TGGCCCAAGA
* * * *
13113222 GTAAATACTTAAAATTTGAGGGATTAA-AAT
1 GTAAATA-TGAAAAGTTGAAGGACTAATAAT
13113252 GTAAATATGAAAAGTTGAAGGACTAATAAT
1 GTAAATATGAAAAGTTGAAGGACTAATAAT
*
13113282 GAAAATAT
1 GTAAATAT
13113290 TTTAAGGGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.50, C:0.03, G:0.18, T:0.29
Consensus pattern (30 bp):
GTAAATATGAAAAGTTGAAGGACTAATAAT
Found at i:13118887 original size:21 final size:21
Alignment explanation
Indices: 13118856--13118928 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 21
13118846 TAAAATTTAT
*
13118856 TTTTTTCTACAAATTTTATATA
1 TTTTTTATACAAATTTTATA-A
**
13118878 TTTTTT-TACATTTTTTATAA
1 TTTTTTATACAAATTTTATAA
13118898 TTTTCTTATGA-AAATTTTATAA
1 TTTT-TTAT-ACAAATTTTATAA
13118920 TTTTCTTAT
1 TTTT-TTAT
13118929 GACTTTATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.11
21 13 0.30
22 25 0.57
23 1 0.02
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.63
Consensus pattern (21 bp):
TTTTTTATACAAATTTTATAA
Found at i:13118900 original size:10 final size:10
Alignment explanation
Indices: 13118869--13118975 Score: 60
Period size: 10 Copynumber: 10.5 Consensus size: 10
13118859 TTTCTACAAA
13118869 TTTTATATATT
1 TTTTATA-ATT
13118880 TTTT-TACATT
1 TTTTATA-ATT
13118890 TTTTATAATT
1 TTTTATAATT
**
13118900 TTCTTATGAAAA
1 TT-TTAT-AATT
13118912 TTTTATAATT
1 TTTTATAATT
*
13118922 TTCTTATGA--
1 TT-TTATAATT
* *
13118931 CTTTATAAAT
1 TTTTATAATT
13118941 TTTTATAATT
1 TTTTATAATT
* *
13118951 ATTTTCTAATC
1 -TTTTATAATT
*
13118962 TTTAAT-ATT
1 TTTTATAATT
13118971 TTTTA
1 TTTTA
13118976 CATTTTTATT
Statistics
Matches: 73, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
8 5 0.07
9 7 0.10
10 30 0.41
11 27 0.37
12 4 0.05
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.63
Consensus pattern (10 bp):
TTTTATAATT
Found at i:13118901 original size:9 final size:9
Alignment explanation
Indices: 13118869--13119037 Score: 51
Period size: 9 Copynumber: 17.4 Consensus size: 9
13118859 TTTCTACAAA
13118869 TTTTATATAT
1 TTTTATA-AT
*
13118879 TTTTTTACATT
1 TTTTATA-A-T
13118890 TTTTATAATT
1 TTTTATAA-T
*
13118900 TTCTTATGAAAA
1 TT-TTAT--AAT
13118912 TTTTATAATT
1 TTTTATAA-T
*
13118922 TTCTTATGA-
1 TT-TTATAAT
*
13118931 CTTTATAAAT
1 TTTTAT-AAT
13118941 TTTTATAATT
1 TTTTATAA-T
*
13118951 ATTTTCTAAT
1 -TTTTATAAT
*
13118961 CTTTA-ATAT
1 TTTTATA-AT
13118970 TTTT-TACAT
1 TTTTATA-AT
*
13118979 TTTTATTAAAA
1 TTTTA-T-AAT
*
13118990 TTTAATAAT
1 TTTTATAAT
*
13118999 TTTTATAAA
1 TTTTATAAT
*
13119008 TTTTATTGAT
1 TTTTA-TAAT
13119018 TTTTAT--T
1 TTTTATAAT
*
13119025 TTTTATCAT
1 TTTTATAAT
13119034 TTTT
1 TTTT
13119038 TACAACATGT
Statistics
Matches: 120, Mismatches: 21, Indels: 37
0.67 0.12 0.21
Matches are distributed among these distances:
7 7 0.06
8 5 0.04
9 41 0.34
10 29 0.24
11 33 0.28
12 3 0.03
13 2 0.02
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:13119007 original size:19 final size:19
Alignment explanation
Indices: 13118977--13119023 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
13118967 TATTTTTTAC
13118977 ATTTTTATTAAAATTTAATA
1 ATTTTTA-TAAAATTTAATA
* * *
13118997 ATTTTTATAAATTTTATTG
1 ATTTTTATAAAATTTAATA
13119016 ATTTTTAT
1 ATTTTTAT
13119024 TTTTTATCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTTTATAAAATTTAATA
Found at i:13119309 original size:85 final size:85
Alignment explanation
Indices: 13119142--13119354 Score: 268
Period size: 85 Copynumber: 2.4 Consensus size: 85
13119132 TTTTGGCAGG
* *
13119142 TCAAGTACCCAATCGAGTGTAAAAAAAAATAGGGGCTTAAATGCTTTTATTGAAAAAGTTTGAGG
1 TCAAGTACCCAATTGAGTG----AAAAAATAGGGGCTTAATTGCTTTTATTGAAAAAGTTTGAGG
*
13119207 GTCTTTTTGATGTATTTTGAAAAT
62 GTCTTTTTGATGCATTTTGAAAAT
* *
13119231 TCAAGTACCCAATTGAGTGCAAAAAACAGGAGCTTAATTGCTTATT-TTG-AAAAGTTTGAGGGT
1 TCAAGTACCCAATTGAGTG-AAAAAATAGGGGCTTAATTGCTT-TTATTGAAAAAGTTTGAGGGT
*
13119294 CTTTTTGATGCATTTTGAAAGT
64 CTTTTTGATGCATTTTGAAAAT
* * *
13119316 TTAAGTACCAAATTAAGTGAAAAAATTAGGGGCTTAATT
1 TCAAGTACCCAATTGAGTGAAAAAA-TAGGGGCTTAATT
13119355 TATTTTTTAT
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
84 6 0.05
85 61 0.55
86 23 0.21
87 2 0.02
89 18 0.16
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (85 bp):
TCAAGTACCCAATTGAGTGAAAAAATAGGGGCTTAATTGCTTTTATTGAAAAAGTTTGAGGGTCT
TTTTGATGCATTTTGAAAAT
Found at i:13122679 original size:16 final size:17
Alignment explanation
Indices: 13122655--13122692 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
13122645 ATGTGAATAA
13122655 TATTATTT-AAAATTAT
1 TATTATTTAAAAATTAT
*
13122671 TATTTTTTAAAAATTAT
1 TATTATTTAAAAATTAT
13122688 TATTA
1 TATTA
13122693 AAATAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TATTATTTAAAAATTAT
Found at i:13122744 original size:22 final size:22
Alignment explanation
Indices: 13122700--13122759 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
13122690 TTAAAATAAA
**
13122700 ATTAAAATTTTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
13122720 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
* * *
13122742 ATTATATTAATAATTTAT
1 ATTAAAATAATAAATTAT
13122760 TATATGACTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 12 0.36
21 2 0.06
22 19 0.58
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:13124910 original size:31 final size:30
Alignment explanation
Indices: 13124867--13124926 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
13124857 AAAGGTCAGT
*
13124867 TAATTTTGAAAAATAATTAAGAA-AATAAAA
1 TAATATTGAAAAATAATTAA-AATAATAAAA
13124897 TAATATTGTAAAAATAATTAAAATAATAAA
1 TAATATTG-AAAAATAATTAAAATAATAAA
13124927 TAAAAATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 9 0.33
31 18 0.67
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (30 bp):
TAATATTGAAAAATAATTAAAATAATAAAA
Found at i:13124937 original size:21 final size:22
Alignment explanation
Indices: 13124905--13124950 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
13124895 AATAATATTG
13124905 TAAAAATAATTAAAATAATAAA
1 TAAAAATAATTAAAATAATAAA
*
13124927 TAAAAAT-ATTAAAATAATATA
1 TAAAAATAATTAAAATAATAAA
13124948 TAA
1 TAA
13124951 TTTTGGAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (22 bp):
TAAAAATAATTAAAATAATAAA
Found at i:13124940 original size:31 final size:31
Alignment explanation
Indices: 13124875--13124936 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 31
13124865 GTTAATTTTG
*
13124875 AAAAATAATTAAGAAAATAAAATAATATTGT
1 AAAAATAATTAAGAAAATAAAAAAATATTGT
13124906 AAAAATAATTAA-AATAATAAATAAAAATATT
1 AAAAATAATTAAGAA-AAT-AA-AAAAATATT
13124937 AAAATAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 2 0.07
31 15 0.56
32 2 0.07
33 8 0.30
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (31 bp):
AAAAATAATTAAGAAAATAAAAAAATATTGT
Found at i:13125076 original size:44 final size:44
Alignment explanation
Indices: 13125026--13125125 Score: 166
Period size: 44 Copynumber: 2.3 Consensus size: 44
13125016 TCATACAACC
*
13125026 CATTTAATAATATTGAAAAGATATTTACA-CTAAATTAATTATCT
1 CATTTAATAATATTGAAAAGATATTTA-AGCTAAACTAATTATCT
*
13125070 CATTTAATAATTTTGAAAAGATATTTAAGCTAAACTAATTATCT
1 CATTTAATAATATTGAAAAGATATTTAAGCTAAACTAATTATCT
13125114 CATTTAATAATA
1 CATTTAATAATA
13125126 ACAATTAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
43 1 0.02
44 51 0.98
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (44 bp):
CATTTAATAATATTGAAAAGATATTTAAGCTAAACTAATTATCT
Found at i:13125644 original size:3 final size:3
Alignment explanation
Indices: 13125636--13125707 Score: 78
Period size: 3 Copynumber: 24.7 Consensus size: 3
13125626 ACAACTTTTT
* *
13125636 TAC TAC TAC TAT TA- TAC TAC TAC TA- TAC TAC TAC TAC TAC TAT TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
* *
13125682 CAC TA- TCAC TAC CAC TAC TAC TAC TA
1 TAC TAC T-AC TAC TAC TAC TAC TAC TA
13125708 TTGGTAAGCT
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
2 5 0.09
3 52 0.90
4 1 0.02
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
TAC
Found at i:13125655 original size:11 final size:11
Alignment explanation
Indices: 13125639--13125680 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
13125629 ACTTTTTTAC
13125639 TACTACTATTA
1 TACTACTATTA
*
13125650 TACTACTACTA
1 TACTACTATTA
*
13125661 TACTACTA--C
1 TACTACTATTA
13125670 TACTACTATTA
1 TACTACTATTA
13125681 CCACTATCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
9 8 0.31
11 18 0.69
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (11 bp):
TACTACTATTA
Found at i:13125658 original size:17 final size:17
Alignment explanation
Indices: 13125636--13125680 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 17
13125626 ACAACTTTTT
13125636 TACTACTACTATTATAC
1 TACTACTACTATTATAC
*
13125653 TACTACTA-TA--CTAC
1 TACTACTACTATTATAC
13125667 TACTACTACTATTA
1 TACTACTACTATTA
13125681 CCACTATCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
14 11 0.48
15 2 0.09
16 2 0.09
17 8 0.35
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (17 bp):
TACTACTACTATTATAC
Found at i:13130245 original size:55 final size:55
Alignment explanation
Indices: 13130088--13130264 Score: 154
Period size: 55 Copynumber: 3.2 Consensus size: 55
13130078 TGTATCTACT
*
13130088 CGGCCATTGACAGGCCAGCACCAAA--TTTTTTTTTTGAAACTCGTACTCTGGTGC
1 CGGCCATTGACAGGCCAACACCAAATTTTTTTTTTTTGAAACTCGTACT-TGGTGC
* * * **
13130142 CGACCATTGATAGGGCAGCATCAAAAAAATTTGATTTTTTTTT-----T-GTACTTGGTGC
1 CGGCCATTGACA-GGC--CAAC-ACCAAATTT--TTTTTTTTTGAAACTCGTACTTGGTGC
* *
13130197 CGGCCATTGACAAGCCAACACCAAATTTTTTTTTTTTGAAACTCGTACTTTGATGC
1 CGGCCATTGACAGGCCAACACCAAATTTTTTTTTTTTGAAACTCGTAC-TTGGTGC
13130253 CGGCCATTGACA
1 CGGCCATTGACA
13130265 TAAAACTCGT
Statistics
Matches: 96, Mismatches: 12, Indels: 28
0.71 0.09 0.21
Matches are distributed among these distances:
49 9 0.09
51 7 0.07
52 3 0.03
54 13 0.14
55 23 0.24
56 23 0.24
57 4 0.04
58 4 0.04
60 1 0.01
62 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (55 bp):
CGGCCATTGACAGGCCAACACCAAATTTTTTTTTTTTGAAACTCGTACTTGGTGC
Found at i:13130276 original size:32 final size:32
Alignment explanation
Indices: 13130235--13130296 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
13130225 TTTTTTTTTG
*
13130235 AAACTCGTACTTTGATGCCGGCCATTGACATA
1 AAACTCGTACTCTGATGCCGGCCATTGACATA
*
13130267 AAACTCGTACTCTGGTGCCGGCCATTGACA
1 AAACTCGTACTCTGATGCCGGCCATTGACA
13130297 GGTCAGCACC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (32 bp):
AAACTCGTACTCTGATGCCGGCCATTGACATA
Found at i:13130892 original size:30 final size:32
Alignment explanation
Indices: 13130829--13130898 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
13130819 TATTTGACAA
*
13130829 TTTAAATATAAATTATTGTATTTATATTTTAT
1 TTTAAATATAAATTATTGTATTTATATTATAT
*
13130861 TTTATATATAAA-TA-TGTA-TT-TATTATAT
1 TTTAAATATAAATTATTGTATTTATATTATAT
13130889 ATTTAAATAT
1 -TTTAAATAT
13130899 TTTATTCGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 7 0.21
29 10 0.29
30 4 0.12
31 2 0.06
32 11 0.32
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (32 bp):
TTTAAATATAAATTATTGTATTTATATTATAT
Found at i:13131298 original size:19 final size:19
Alignment explanation
Indices: 13131270--13131306 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13131260 TATCTTTACG
*
13131270 TCTCTGCTGCTGCTTCACA
1 TCTCTACTGCTGCTTCACA
*
13131289 TCTCTACTGCTGTTTCAC
1 TCTCTACTGCTGCTTCAC
13131307 GTCCCTGCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.35, G:0.14, T:0.41
Consensus pattern (19 bp):
TCTCTACTGCTGCTTCACA
Found at i:13135669 original size:53 final size:53
Alignment explanation
Indices: 13135533--13135678 Score: 204
Period size: 53 Copynumber: 2.7 Consensus size: 53
13135523 TGCGCACGTT
**
13135533 TAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACTCCATA
1 TAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACTCCATA
* *
13135586 TAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATTCCGTA
1 TAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACTCCATA
* *
13135639 TAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 TAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
13135679 ACCGTGTAAG
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 76 0.90
54 1 0.01
55 6 0.07
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (53 bp):
TAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACTCCATA
Found at i:13138419 original size:19 final size:19
Alignment explanation
Indices: 13138391--13138456 Score: 105
Period size: 19 Copynumber: 3.5 Consensus size: 19
13138381 TAACAGTAGG
*
13138391 GACGTAAAGCAGCAGCAGA
1 GACGTGAAGCAGCAGCAGA
*
13138410 GACGTGAAGCAGCAGCAAA
1 GACGTGAAGCAGCAGCAGA
*
13138429 GATGTGAAGCAGCAGCAGA
1 GACGTGAAGCAGCAGCAGA
13138448 GACGTGAAG
1 GACGTGAAG
13138457 ATAGAACATT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 42 1.00
ACGTcount: A:0.39, C:0.18, G:0.35, T:0.08
Consensus pattern (19 bp):
GACGTGAAGCAGCAGCAGA
Found at i:13138554 original size:35 final size:33
Alignment explanation
Indices: 13138516--13138618 Score: 108
Period size: 34 Copynumber: 3.2 Consensus size: 33
13138506 TTTATGATCA
13138516 AAAAATCTAATTAAATGATGTGTAAATGAGATGT
1 AAAAATCTAATTAAATGATGTGTAAAT-AGATGT
* *
13138550 AAAAAT-TAATTGACATG-TCAT-TAAAT-GAT-T
1 AAAAATCTAATT-AAATGAT-GTGTAAATAGATGT
*
13138580 AAAAATCTAATTAAATGAGGTGTAAATAGCATGT
1 AAAAATCTAATTAAATGATGTGTAAATAG-ATGT
13138614 AAAAA
1 AAAAA
13138619 ATAGCTTACA
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
30 12 0.21
31 13 0.23
32 1 0.02
33 13 0.23
34 17 0.30
ACGTcount: A:0.50, C:0.05, G:0.15, T:0.31
Consensus pattern (33 bp):
AAAAATCTAATTAAATGATGTGTAAATAGATGT
Found at i:13138589 original size:64 final size:64
Alignment explanation
Indices: 13138516--13138643 Score: 188
Period size: 64 Copynumber: 2.0 Consensus size: 64
13138506 TTTATGATCA
* *
13138516 AAAAATCTAATTAAATGATGTGTAAATGAG-ATGTAAAAATTA-ATTGACATGTCATTAAATGAT
1 AAAAATCTAATTAAATGAGGTGTAAAT-AGCATGTAAAAAATAGATT-ACATGTCATTAAATGAT
13138579 T
64 T
* *
13138580 AAAAATCTAATTAAATGAGGTGTAAATAGCATGTAAAAAATAGCTTACATGTCATTAATTGATT
1 AAAAATCTAATTAAATGAGGTGTAAATAGCATGTAAAAAATAGATTACATGTCATTAAATGATT
13138644 GGGAAAGGAC
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
63 2 0.03
64 54 0.93
65 2 0.03
ACGTcount: A:0.46, C:0.06, G:0.14, T:0.34
Consensus pattern (64 bp):
AAAAATCTAATTAAATGAGGTGTAAATAGCATGTAAAAAATAGATTACATGTCATTAAATGATT
Found at i:13141492 original size:19 final size:19
Alignment explanation
Indices: 13141450--13141495 Score: 78
Period size: 18 Copynumber: 2.5 Consensus size: 19
13141440 ATAATATTAA
13141450 TTAA-TAAAATATTTTTAC
1 TTAATTAAAATATTTTTAC
13141468 TT-ATTAAAATATTTTTAC
1 TTAATTAAAATATTTTTAC
13141486 TTAATTAAAA
1 TTAATTAAAA
13141496 ATCATTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 1 0.04
18 18 0.69
19 7 0.27
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (19 bp):
TTAATTAAAATATTTTTAC
Found at i:13141792 original size:2 final size:2
Alignment explanation
Indices: 13141785--13141817 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
13141775 CTATAAATAT
13141785 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
13141818 TAAAAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:13147075 original size:17 final size:18
Alignment explanation
Indices: 13147055--13147102 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
13147045 ATTTATTTTA
13147055 TTTTA-ATATTTAATAATT
1 TTTTATATATTTAA-AATT
* *
13147073 TTTTATTTATTGAAAA-T
1 TTTTATATATTTAAAATT
13147090 TTTTATATATTTA
1 TTTTATATATTTA
13147103 TCTTAACACA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 12 0.48
18 7 0.28
19 6 0.24
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
TTTTATATATTTAAAATT
Found at i:13148313 original size:13 final size:13
Alignment explanation
Indices: 13148295--13148325 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
13148285 GAAGTTATAC
13148295 TTTTATTTTTTAA
1 TTTTATTTTTTAA
13148308 TTTTA-TTTTTAA
1 TTTTATTTTTTAA
13148320 TTTTAT
1 TTTTAT
13148326 ATTATGAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTATTTTTTAA
Found at i:13148730 original size:16 final size:15
Alignment explanation
Indices: 13148699--13148728 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13148689 ATTATTAGTA
13148699 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
*
13148714 ATTTTTTTAATATTT
1 ATTTTTTAAATATTT
13148729 TACCATACGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:13149160 original size:27 final size:26
Alignment explanation
Indices: 13149116--13149171 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
13149106 AAATTTTTTA
*
13149116 AAAAAATTGGTCTATTTTTATAATATTT
1 AAAAAATTGGCCTATTTTTA-AA-ATTT
*
13149144 AAAAAA-TGGCCTTTTTTTAAAATTT
1 AAAAAATTGGCCTATTTTTAAAATTT
13149169 AAA
1 AAA
13149172 CACGGGCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 7 0.27
26 2 0.08
27 11 0.42
28 6 0.23
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (26 bp):
AAAAAATTGGCCTATTTTTAAAATTT
Found at i:13149168 original size:25 final size:28
Alignment explanation
Indices: 13149116--13149171 Score: 73
Period size: 25 Copynumber: 2.1 Consensus size: 28
13149106 AAATTTTTTA
* *
13149116 AAAAAATTGGTCTATTTTTATAATATTT
1 AAAAAATTGGCCTATTTTTATAAAATTT
13149144 AAAAAA-TGGCCT-TTTTT-TAAAATTT
1 AAAAAATTGGCCTATTTTTATAAAATTT
13149169 AAA
1 AAA
13149172 CACGGGCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 10 0.38
26 5 0.19
27 5 0.19
28 6 0.23
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (28 bp):
AAAAAATTGGCCTATTTTTATAAAATTT
Found at i:13150533 original size:29 final size:29
Alignment explanation
Indices: 13150490--13150545 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
13150480 TGAGAACTCA
13150490 ATGTCTTTGAACCAAATCCAAACCAATTG
1 ATGTCTTTGAACCAAATCCAAACCAATTG
*
13150519 ATGTCTTTGATCCAAATCCAAACCAAT
1 ATGTCTTTGAACCAAATCCAAACCAAT
13150546 CTCTAGGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.29
Consensus pattern (29 bp):
ATGTCTTTGAACCAAATCCAAACCAATTG
Found at i:13156319 original size:16 final size:16
Alignment explanation
Indices: 13156298--13156341 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
13156288 TATGAAATTT
13156298 TAATATTTTATTAAAA
1 TAATATTTTATTAAAA
*
13156314 TAATATTTTAATTAAGA
1 TAATATTTT-ATTAAAA
*
13156331 TCAT-TTTTATT
1 TAATATTTTATT
13156342 TAACAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 13 0.52
17 9 0.36
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (16 bp):
TAATATTTTATTAAAA
Done.