Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 42 of 343
Found at i:13794000 original size:22 final size:22
Alignment explanation
Indices: 13793973--13794019 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
13793963 TAACATGTCT
13793973 AAAATGGACATTTTATTTCTCA
1 AAAATGGACATTTTATTTCTCA
13793995 AAAATGGACATTTTATTTCTCA
1 AAAATGGACATTTTATTTCTCA
13794017 AAA
1 AAA
13794020 GCACTTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (22 bp):
AAAATGGACATTTTATTTCTCA
Found at i:13794084 original size:13 final size:13
Alignment explanation
Indices: 13794068--13794128 Score: 86
Period size: 13 Copynumber: 4.7 Consensus size: 13
13794058 ACCAAATTTT
13794068 TCAAAAGCACTTC
1 TCAAAAGCACTTC
*
13794081 TCAAAAGCACTTT
1 TCAAAAGCACTTC
* *
13794094 TCCACAGCACTTC
1 TCAAAAGCACTTC
*
13794107 TCAAAAGCACTTT
1 TCAAAAGCACTTC
13794120 TCAAAAGCA
1 TCAAAAGCA
13794129 TTGCCAAACT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.38, C:0.30, G:0.08, T:0.25
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:13794128 original size:26 final size:26
Alignment explanation
Indices: 13794065--13794128 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
13794055 TAAACCAAAT
13794065 TTTTCAAAAGCACTTCTCAAAAGCAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
* *
13794091 TTTTCCACAGCACTTCTCAAAAGCAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
13794117 TTTTCAAAAGCA
1 TTTTCAAAAGCA
13794129 TTGCCAAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTCAAAAGCAC
Found at i:13795630 original size:43 final size:44
Alignment explanation
Indices: 13795550--13795707 Score: 159
Period size: 43 Copynumber: 3.7 Consensus size: 44
13795540 CAATACCATA
* ** *
13795550 TCCCAGATATGGTCTTACATGTTATCAC-ATATC-GATGCCAATG
1 TCCCAGACATGGTCTTACACATAATCACAATA-CAGATGCCAATG
*
13795593 TCCTAGACATGGTCTTACACGA-AA-C-CATATA-ATGATGCCAATG
1 TCCCAGACATGGTCTTACAC-ATAATCACA-ATACA-GATGCCAATG
13795636 TCCCAGACATGGTCTTACACATAATCACAATACA-ATGCCAATG
1 TCCCAGACATGGTCTTACACATAATCACAATACAGATGCCAATG
* **
13795679 TCCCAAACATGGTCTTACATGTAATCACA
1 TCCCAGACATGGTCTTACACATAATCACA
13795708 TCTAGGTAAT
Statistics
Matches: 97, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 87 0.90
44 4 0.04
45 3 0.03
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACACATAATCACAATACAGATGCCAATG
Found at i:13797020 original size:15 final size:15
Alignment explanation
Indices: 13796996--13797027 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13796986 TATACATGCA
*
13796996 AAATATAAAAGACAT
1 AAATACAAAAGACAT
13797011 AAATACAAAAGACAT
1 AAATACAAAAGACAT
13797026 AA
1 AA
13797028 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:13801231 original size:8 final size:8
Alignment explanation
Indices: 13801218--13801254 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
13801208 TTCATTTTCA
13801218 TTTTTATT
1 TTTTTATT
13801226 TTTTTATT
1 TTTTTATT
13801234 TTTTTATT
1 TTTTTATT
* *
13801242 TTCTCATT
1 TTTTTATT
13801250 TTTTT
1 TTTTT
13801255 TCAATATATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTATT
Found at i:13803373 original size:29 final size:29
Alignment explanation
Indices: 13803310--13803417 Score: 130
Period size: 29 Copynumber: 3.8 Consensus size: 29
13803300 TTCACATACC
* *
13803310 TGTATCTGGCCCATTAAGCCC-AATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
13803338 T-TCATATGACCAATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
13803367 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
13803396 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
13803418 GTCACATTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.01
28 15 0.22
29 50 0.75
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:13803379 original size:57 final size:58
Alignment explanation
Indices: 13803307--13803417 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
13803297 AATTTCACAT
*
13803307 ACCTGTATCTGGCCCATTAAGCCC-AATCACATTCATATGACCAATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGACCAATTAGGCCCAAATC
* * * **
13803364 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGACCAATTAGGCCCA
13803418 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.47
58 25 0.53
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGACCAATTAGGCCCAAATC
Found at i:13806207 original size:19 final size:18
Alignment explanation
Indices: 13806165--13806207 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
13806155 ATGCAAGTAG
*
13806165 TTTGGTTTGTAATGTGGA
1 TTTGGTTTGTAATGTGAA
13806183 TTTGGTTTGATAAT-TGAA
1 TTTGGTTTG-TAATGTGAA
13806201 TTGTGGT
1 TT-TGGT
13806208 ACCAATGAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.51
Consensus pattern (18 bp):
TTTGGTTTGTAATGTGAA
Found at i:13816970 original size:120 final size:120
Alignment explanation
Indices: 13816757--13816989 Score: 421
Period size: 120 Copynumber: 1.9 Consensus size: 120
13816747 AACTTTAACA
13816757 CATGCATATACTCATATTCTAAGCCTCATATTAATCATAAAATAAATATTTTGATGTCAGATTTG
1 CATGCATATACTCATATTCTAAGCCTCATATTAATCATAAAATAAATATTTTGATGTCAGATTTG
13816822 TGGTCCCGAAACCACTATTCTGACTAGGCCCTATGTCGCGATGTTACATTTCTCC
66 TGGTCCCGAAACCACTATTCTGACTAGGCCCTATGTCGCGATGTTACATTTCTCC
*
13816877 CATGCATATACTCATATTCTAGGCCTCATATTAATCATAAAATAAATATTTTGATGTCAGATTTG
1 CATGCATATACTCATATTCTAAGCCTCATATTAATCATAAAATAAATATTTTGATGTCAGATTTG
* * * *
13816942 TGGTTCTGAAACCACTATTCTGACTAGGCCCTATTTCGGGATGTTACA
66 TGGTCCCGAAACCACTATTCTGACTAGGCCCTATGTCGCGATGTTACA
13816990 GAGCATTTTT
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 108 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.36
Consensus pattern (120 bp):
CATGCATATACTCATATTCTAAGCCTCATATTAATCATAAAATAAATATTTTGATGTCAGATTTG
TGGTCCCGAAACCACTATTCTGACTAGGCCCTATGTCGCGATGTTACATTTCTCC
Found at i:13835197 original size:48 final size:48
Alignment explanation
Indices: 13835131--13835360 Score: 240
Period size: 48 Copynumber: 4.9 Consensus size: 48
13835121 ACATAGTTGG
* * * *
13835131 ATGCCAATGCTATATCCCAGATATGGTCTTACATGGGATCACATATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCA
*
13835179 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCATGCACATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCA--CATATCA
* * * * **
13835229 AAGCCGAT---A-G-CCCAG-CTATGGTCTTACACGATG-TCTCATATTT
1 ATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGA-GATCACATATCA
* *
13835272 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATTTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCA
* *
13835320 ATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCA
13835361 TGCATATCCT
Statistics
Matches: 150, Mismatches: 21, Indels: 22
0.78 0.11 0.11
Matches are distributed among these distances:
43 10 0.07
44 1 0.01
45 20 0.13
46 3 0.02
47 3 0.02
48 100 0.67
49 1 0.01
50 12 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCA
Found at i:13838030 original size:27 final size:26
Alignment explanation
Indices: 13837993--13838108 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 26
13837983 AGCATGGCTG
* *
13837993 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
13838019 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
13838047 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
13838074 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
13838101 CCAGAACA
1 CCAGAACA
13838109 CTTCCTCCAT
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 59 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:13838052 original size:54 final size:54
Alignment explanation
Indices: 13837993--13838108 Score: 171
Period size: 54 Copynumber: 2.1 Consensus size: 54
13837983 AGCATGGCTG
*
13837993 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
13838047 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
13838101 CCAGAACA
1 CCAGAACA
13838109 CTTCCTCCAT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 38 0.68
55 18 0.32
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:13839762 original size:26 final size:26
Alignment explanation
Indices: 13839725--13839782 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
13839715 CATGAAATTC
*
13839725 TTATCATGGAACATTTGCCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
* *
13839751 TTATCATTGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
13839777 TTATCA
1 TTATCA
13839783 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.33, C:0.24, G:0.07, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:13842993 original size:57 final size:57
Alignment explanation
Indices: 13842915--13843097 Score: 244
Period size: 57 Copynumber: 3.2 Consensus size: 57
13842905 ACCAGTCCAA
*
13842915 GCTAAATCCTTTTTATAACATATGCTCTAAGGAGCTTGATCTGGATTACCTGTTCGG
1 GCTAAATCCTTCTTATAACATATGCTCTAAGGAGCTTGATCTGGATTACCTGTTCGG
*
13842972 GCTAAATCCTTCTTATGACATATGCTCTAAGGAGCTTGATCTGGATTACCTGTTCGG
1 GCTAAATCCTTCTTATAACATATGCTCTAAGGAGCTTGATCTGGATTACCTGTTCGG
* * * * * * *
13843029 GCTAAATCCAATC-CATAACATATGCTCAAGAGGA-CTTATATCAGGATTACCCGTCCGG
1 GCTAAATCC-TTCTTATAACATATGCTCTA-AGGAGCTT-GATCTGGATTACCTGTTCGG
13843087 GCTAAATCCTT
1 GCTAAATCCTT
13843098 TCTGTGATGA
Statistics
Matches: 112, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
57 81 0.72
58 31 0.28
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (57 bp):
GCTAAATCCTTCTTATAACATATGCTCTAAGGAGCTTGATCTGGATTACCTGTTCGG
Found at i:13851399 original size:28 final size:28
Alignment explanation
Indices: 13851368--13851429 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
13851358 TGATGGATCG
* *
13851368 TATGAATGTGACTGGGCCTGATGGGCCA
1 TATGAATGTGACTAGGCCTGATAGGCCA
*
13851396 TATGAATGTGATTAGGCCTGATAGGCCA
1 TATGAATGTGACTAGGCCTGATAGGCCA
*
13851424 TGTGAA
1 TATGAA
13851430 CGAGTTGGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
TATGAATGTGACTAGGCCTGATAGGCCA
Found at i:13851742 original size:27 final size:27
Alignment explanation
Indices: 13851712--13851969 Score: 245
Period size: 27 Copynumber: 9.6 Consensus size: 27
13851702 TAATAAAGAG
* * *
13851712 AAATTATTGAAATACCCCCGGTTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
13851739 AAATTA-CCAAAGTACCCCCGATTTGTG
1 AAATTATCGAAA-TACCCTCGATTTGTA
* **
13851766 AAATTATCGAAATACCTTTAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
** * **
13851793 AAATTATAAAAACACCCTTAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
13851820 AAATT-TCCGAAACACCCTCGATTTGTA
1 AAATTAT-CGAAATACCCTCGATTTGTA
13851847 AAATTA-CTGAAATACCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* **
13851874 AAATTATCGAAACACCCTTAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
13851901 AAATTA-CTGAAATACCCTCAATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * * *
13851928 AAATTACCGAAACAGCCTCGATTTCTA
1 AAATTATCGAAATACCCTCGATTTGTA
13851955 AAATTATCGAAATAC
1 AAATTATCGAAATAC
13851970 TCTTATAGTG
Statistics
Matches: 192, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
26 6 0.03
27 180 0.94
28 6 0.03
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:13851962 original size:81 final size:79
Alignment explanation
Indices: 13851733--13851998 Score: 291
Period size: 81 Copynumber: 3.3 Consensus size: 79
13851723 ATACCCCCGG
* * * * **
13851733 TTTGTAAAATTACCAAAGTACCCCCGATTTGTGAAATTATCGAAATACCTTTAATTTGTAAAATT
1 TTTGTAAAATTACGAAA-TACCCTCGATTTGTAAAATTACCGAAATACC-TCGATTTGTAAAATT
**
13851798 ATAAAAACACCCTTAA
64 ATCGAAACACCCTTAA
* * *
13851814 TTTGTAAAATTTCCGAAACACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATT
1 TTTGTAAAA-TTACGAAATACCCTCGATTTGTAAAATTACCGAAATA-CCTCGATTTGTAAAATT
13851879 ATCGAAACACCCTTAA
64 ATCGAAACACCCTTAA
* * *
13851895 TTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCGAAACAGCCTCGATTTCTAAAATT
1 TTTGTAAAATTAC-GAAATACCCTCGATTTGTAAAATTACCGAAATA-CCTCGATTTGTAAAATT
* *
13851960 ATCGAAATACTCTT-A
64 ATCGAAACACCCTTAA
* *
13851975 TAGTGTAAAATAAACGAAATACCC
1 T-TTGTAAAAT-TACGAAATACCC
13851999 CTATAGGGTA
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
80 5 0.03
81 143 0.91
82 10 0.06
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (79 bp):
TTTGTAAAATTACGAAATACCCTCGATTTGTAAAATTACCGAAATACCTCGATTTGTAAAATTAT
CGAAACACCCTTAA
Found at i:13851983 original size:27 final size:27
Alignment explanation
Indices: 13851953--13852012 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
13851943 CCTCGATTTC
* * * * *
13851953 TAAAATTATCGAAATACTCTTATAGTG
1 TAAAATAAACGAAATACCCCTATAGGG
13851980 TAAAATAAACGAAATACCCCTATAGGG
1 TAAAATAAACGAAATACCCCTATAGGG
13852007 TAAAAT
1 TAAAAT
13852013 GACTGTTTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (27 bp):
TAAAATAAACGAAATACCCCTATAGGG
Found at i:13851993 original size:54 final size:54
Alignment explanation
Indices: 13851733--13851998 Score: 204
Period size: 54 Copynumber: 4.9 Consensus size: 54
13851723 ATACCCCCGG
* * * * * * **
13851733 TTTGTAAAATTAC-CAAAGTACCCCCGAT-TTGTGAAATTATCGAAATACCTTTAA
1 TTTGTAAAATTACTGAAA-TACCCTC-ATATTGTAAAATTAACGAAACACCCTCGA
* * * **
13851787 TTTGTAAAATTA-TAAAAACACCCTTA-ATTTGTAAAATTTCCGAAACACCCTCGA
1 TTTGTAAAATTACT-GAAATACCCTCATA-TTGTAAAATTAACGAAACACCCTCGA
* **
13851841 TTTGTAAAATTACTGAAATACCCTCGAT-TTGTAAAATTATCGAAACACCCTTAA
1 TTTGTAAAATTACTGAAATACCCTC-ATATTGTAAAATTAACGAAACACCCTCGA
* *
13851895 TTTGTAAAATTACTGAAATACCCTCA-ATTTGTAAAATTACCGAAACAGCCTCGA
1 TTTGTAAAATTACTGAAATACCCTCATA-TTGTAAAATTAACGAAACACCCTCGA
* * * * * *
13851949 TTTCTAAAATTA-TCGAAATACTCTTATAGTGTAAAATAAACGAAATACCC
1 TTTGTAAAATTACT-GAAATACCCTCATATTGTAAAATTAACGAAACACCC
13851999 CTATAGGGTA
Statistics
Matches: 171, Mismatches: 30, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
53 3 0.02
54 162 0.95
55 6 0.04
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
TTTGTAAAATTACTGAAATACCCTCATATTGTAAAATTAACGAAACACCCTCGA
Found at i:13860319 original size:30 final size:30
Alignment explanation
Indices: 13860274--13860333 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
13860264 GATACGGGAA
13860274 AATTGAATCAAAATTAAAGTTTTATGTATAT
1 AATTGAATCAAAATTAAAG-TTTATGTATAT
*
13860305 AATTGAAT-AAAATTAAAGTTTGTGTATAT
1 AATTGAATCAAAATTAAAGTTTATGTATAT
13860334 GATTACACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 10 0.36
30 10 0.36
31 8 0.29
ACGTcount: A:0.45, C:0.02, G:0.12, T:0.42
Consensus pattern (30 bp):
AATTGAATCAAAATTAAAGTTTATGTATAT
Found at i:13867532 original size:26 final size:26
Alignment explanation
Indices: 13867488--13867551 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
13867478 CCATGTTATT
* *
13867488 TTATATGTATAATTTCTTTTAAATCTA
1 TTATATATAT-ATTTCTTTCAAATCTA
13867515 TT-TATATATATTTCCTTTCAAATCTA
1 TTATATATATATTT-CTTTCAAATCTA
*
13867541 TTATGTATATA
1 TTATATATATA
13867552 GTTTATTCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 4 0.12
26 19 0.59
27 9 0.28
ACGTcount: A:0.33, C:0.09, G:0.03, T:0.55
Consensus pattern (26 bp):
TTATATATATATTTCTTTCAAATCTA
Found at i:13869040 original size:30 final size:31
Alignment explanation
Indices: 13868995--13869057 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 31
13868985 TAAACTTATA
* * *
13868995 TTTTTAAATTCGAAAATTAAAAAAATTAAAT
1 TTTTTAAAATCGAAAAATAAAAAAACTAAAT
*
13869026 TTTTTAAAAT-GAAAAATAAAATAACTAAAT
1 TTTTTAAAATCGAAAAATAAAAAAACTAAAT
13869056 TT
1 TT
13869058 CAAATATAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 19 0.68
31 9 0.32
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (31 bp):
TTTTTAAAATCGAAAAATAAAAAAACTAAAT
Found at i:13872976 original size:52 final size:52
Alignment explanation
Indices: 13872898--13872999 Score: 152
Period size: 52 Copynumber: 2.0 Consensus size: 52
13872888 TATTATTCTA
**
13872898 AACAACATAACAATTAACTATTTAAAATTAAATAATTTGATAATATTTTCCT
1 AACAACATAACAATTAACTATTTAAAATTAAATAATTAAATAATATTTTCCT
* *
13872950 AACATCATAATAATTAAC-ATATTAAAATTAAATAATTAAATAATATTTTC
1 AACAACATAACAATTAACTAT-TTAAAATTAAATAATTAAATAATATTTTC
13873000 TTACCATTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.04
52 43 0.96
ACGTcount: A:0.51, C:0.10, G:0.01, T:0.38
Consensus pattern (52 bp):
AACAACATAACAATTAACTATTTAAAATTAAATAATTAAATAATATTTTCCT
Found at i:13873096 original size:22 final size:21
Alignment explanation
Indices: 13873066--13873106 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
13873056 TATGCCATCG
* *
13873066 AAGACTTAATAAAATAAAATAA
1 AAGAATTAAGAAAA-AAAATAA
13873088 AAGAATTAAGAAAAAAAAT
1 AAGAATTAAGAAAAAAAAT
13873107 TTAAATCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.71, C:0.02, G:0.07, T:0.20
Consensus pattern (21 bp):
AAGAATTAAGAAAAAAAATAA
Found at i:13876310 original size:11 final size:10
Alignment explanation
Indices: 13876290--13876333 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
13876280 AAATTTAATT
*
13876290 TTTTTTAAAA
1 TTTTTAAAAA
13876300 TATTTTAAAAA
1 T-TTTTAAAAA
13876311 TTTTTAAAAA
1 TTTTTAAAAA
*
13876321 TTAATTAAAAA
1 TT-TTTAAAAA
13876332 TT
1 TT
13876334 GAGATGTCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
10 12 0.40
11 18 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:13876328 original size:21 final size:20
Alignment explanation
Indices: 13876291--13876333 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
13876281 AATTTAATTT
13876291 TTTTTAAAATATTTTAAAAA
1 TTTTTAAAATATTTTAAAAA
13876311 TTTTTAAAA-ATTAATTAAAAA
1 TTTTTAAAATATT--TTAAAAA
13876332 TT
1 TT
13876334 GAGATGTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.14
20 9 0.43
21 9 0.43
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTTTAAAATATTTTAAAAA
Found at i:13880562 original size:24 final size:24
Alignment explanation
Indices: 13880530--13880581 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
13880520 ACCACTTGGA
13880530 ATACTGAGGATACTTAGGATTATC
1 ATACTGAGGATACTTAGGATTATC
13880554 ATACTGAGGATACTTAGGATTATC
1 ATACTGAGGATACTTAGGATTATC
13880578 ATAC
1 ATAC
13880582 ACACAATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (24 bp):
ATACTGAGGATACTTAGGATTATC
Found at i:13881454 original size:35 final size:33
Alignment explanation
Indices: 13881415--13881519 Score: 83
Period size: 35 Copynumber: 3.1 Consensus size: 33
13881405 AAACAAATAT
13881415 GAATAATATCGAATTTAAATATTTTAAAAGTAAAA
1 GAATAATAT--AATTTAAATATTTTAAAAGTAAAA
* ** *
13881450 GAATAA-ATAA-GTAAATA-GATAAAA-TAAAT
1 GAATAATATAATTTAAATATTTTAAAAGTAAAA
*
13881479 GTACATAATATTAAATTTAAATATTTTAAAAGTAAGA
1 G-A-ATAATA-T-AATTTAAATATTTTAAAAGTAAAA
13881516 GAAT
1 GAAT
13881520 GAAAAATAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 16
0.68 0.12 0.21
Matches are distributed among these distances:
29 5 0.09
30 6 0.11
31 10 0.19
32 3 0.06
33 1 0.02
34 4 0.08
35 14 0.26
36 6 0.11
37 4 0.08
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (33 bp):
GAATAATATAATTTAAATATTTTAAAAGTAAAA
Found at i:13881496 original size:66 final size:65
Alignment explanation
Indices: 13881346--13881639 Score: 205
Period size: 70 Copynumber: 4.2 Consensus size: 65
13881336 AGATAAAATA
* * * **
13881346 AATAACATTAAATTGAAGTATTCAAAAAGTAAAAGAATAAATAAATAAATAAATTGATAAAACAA
1 AATAATATTAAATTTAAATATTTTAAAAGTAAAAGAATAAAT-AATAAAT--A--GATAAAACAA
13881411 ATATG
61 ATATG
** * *
13881416 AATAATATCGAATTTAAATATTTTAAAAGTAAAAGAATAAATAAGTAAATAGATAAAATAAATGT
1 AATAATATTAAATTTAAATATTTTAAAAGTAAAAGAATAAATAA-TAAATAGATAAAACAAATAT
13881481 -
65 G
* *
13881481 ACATAATATTAAATTTAAATATTTTAAAAGTAAGAGAATGAAAAATAAATAAATAAATTGATAAC
1 A-ATAATATTAAATTTAAATATTTTAAAAGT-A-A-AA-G---AATAAAT-AATAAATAGATAAA
* *
13881546 ACAACTATA
57 ACAAATATG
* * * * * * *
13881555 AATAATATTACATTTAAATA-TTTGAAAGATAAAAGAATAACGAACAAATAAATAAATATAATAG
1 AATAATATTAAATTTAAATATTTTAAAAG-TAAAAGAAT-A--AA-TAATAAATAGATAAAACAA
*
13881619 ATTTG
61 ATATG
13881624 AATAATATTAAATTTA
1 AATAATATTAAATTTA
13881640 GGTATTAAAA
Statistics
Matches: 179, Mismatches: 29, Indels: 33
0.74 0.12 0.14
Matches are distributed among these distances:
65 1 0.01
66 42 0.23
67 2 0.01
68 2 0.01
69 36 0.20
70 43 0.24
71 1 0.01
72 8 0.04
73 41 0.23
74 3 0.02
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.30
Consensus pattern (65 bp):
AATAATATTAAATTTAAATATTTTAAAAGTAAAAGAATAAATAATAAATAGATAAAACAAATATG
Found at i:13881538 original size:73 final size:75
Alignment explanation
Indices: 13881451--13881620 Score: 193
Period size: 73 Copynumber: 2.3 Consensus size: 75
13881441 AAAGTAAAAG
* * * * *
13881451 AATAAATAAGTAAATAGATAAAATAAATGTACATAATATTAAATTTAAATATTTTAAAAG-TAAG
1 AATAAATAAATAAATAGATAAAACAAATATAAATAATATTAAATTTAAATA-TTTAAAAGATAAA
13881515 AGAAT-GAA-A
65 AGAATAGAACA
* * * * *
13881524 AATAAATAAATAAATTGATAACACAACTATAAATAATATTACATTTAAATATTTGAAAGATAAAA
1 AATAAATAAATAAATAGATAAAACAAATATAAATAATATTAAATTTAAATATTTAAAAGATAAAA
13881589 GAATAACGAACA
66 GAAT-A-GAACA
13881601 AATAAATAAATATAATAGAT
1 AATAAATAAATA-AATAGAT
13881621 TTGAATAATA
Statistics
Matches: 80, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
72 7 0.09
73 51 0.64
76 3 0.04
77 13 0.16
78 6 0.08
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (75 bp):
AATAAATAAATAAATAGATAAAACAAATATAAATAATATTAAATTTAAATATTTAAAAGATAAAA
GAATAGAACA
Found at i:13883207 original size:89 final size:89
Alignment explanation
Indices: 13883056--13883228 Score: 222
Period size: 89 Copynumber: 1.9 Consensus size: 89
13883046 TTTCAAGTAA
* * * * * *
13883056 CTTCAACCCGCTCCACTACAACTTTAGGAAGATAAGGTTTATAGCTTTATTTTACTCTACTGCAA
1 CTTCAACCCACTCCACTACAACTTCAGGAAGATAAGATCTATAACTTTATTTTACTCCACTGCAA
*
13883121 CTTCAGAGAGATAAGATTTGCTAT
66 CTTCAGAGAGATAAAATTTGCTAT
* * * *
13883145 CTTCAATCCACTCCACTACAACTTCAGGGAGGTAAGATCTGTAACTTTAATTTT-CTCCACTGCA
1 CTTCAACCCACTCCACTACAACTTCAGGAAGATAAGATCTATAACTTT-ATTTTACTCCACTGCA
*
13883209 ACTTCAGGGAGATAAAATTT
65 ACTTCAGAGAGATAAAATTT
13883229 TTAATCTGTA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
89 66 0.93
90 5 0.07
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (89 bp):
CTTCAACCCACTCCACTACAACTTCAGGAAGATAAGATCTATAACTTTATTTTACTCCACTGCAA
CTTCAGAGAGATAAAATTTGCTAT
Found at i:13883214 original size:44 final size:44
Alignment explanation
Indices: 13883066--13883365 Score: 217
Period size: 44 Copynumber: 6.6 Consensus size: 44
13883056 CTTCAACCCG
* * * * * *
13883066 CTCCACTACAACTTTAGGAAGATAAGGTTTATAGCTTT-ATTTT
1 CTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTTAATCTT
* * * * * **
13883109 ACTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCCA
1 -CTCCACTACAACTTCAGGGAGATAAGATTTG-TAACTTTAATCTT
* * *
13883155 CTCCACTACAACTTCAGGGAGGTAAGATCTGTAACTTTAATTTT
1 CTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTTAATCTT
* *
13883199 CTCCACTGCAACTTCAGGGAGATAAAATTTTTAATCTGTAACTTTAATCTAT
1 CTCCACTACAACTTCAGGGAGATAAGA----T--T-TGTAACTTTAATCT-T
* * * *
13883251 -TCCACTACAACTTCAGGGAAATAAGATTTGTAACTTCAACCTG
1 CTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTTAATCTT
* * * * *
13883294 CTCCACTACAACTTCATGGAGATAAGGTTTATAGCTTTAATCTG
1 CTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTTAATCTT
* * * *
13883338 CTCTACTGCAACTTCAGAGCGATAAGAT
1 CTCCACTACAACTTCAGGGAGATAAGAT
13883366 AGCAAAGCTC
Statistics
Matches: 199, Mismatches: 46, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
44 126 0.63
45 32 0.16
46 2 0.01
47 1 0.01
48 1 0.01
51 36 0.18
52 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (44 bp):
CTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTTAATCTT
Found at i:13883240 original size:51 final size:51
Alignment explanation
Indices: 13883181--13883279 Score: 146
Period size: 51 Copynumber: 1.9 Consensus size: 51
13883171 GGGAGGTAAG
* * *
13883181 ATCTGTAACTTTAAT-TTTCTCCACTGCAACTTCAGGGAGATAAAATTTTTA
1 ATCTGTAACTTTAATCTAT-TCCACTACAACTTCAGGGAAATAAAATTTTTA
*
13883232 ATCTGTAACTTTAATCTATTCCACTACAACTTCAGGGAAATAAGATTT
1 ATCTGTAACTTTAATCTATTCCACTACAACTTCAGGGAAATAAAATTT
13883280 GTAACTTCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 41 0.95
52 2 0.05
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.37
Consensus pattern (51 bp):
ATCTGTAACTTTAATCTATTCCACTACAACTTCAGGGAAATAAAATTTTTA
Found at i:13884624 original size:19 final size:20
Alignment explanation
Indices: 13884608--13884646 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
13884598 TTATGAAACT
*
13884608 TAATGCATATG-ATGAAATG
1 TAATGCAGATGAATGAAATG
13884627 TAATGCAGATGAATGAAATG
1 TAATGCAGATGAATGAAATG
13884647 AATACAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (20 bp):
TAATGCAGATGAATGAAATG
Found at i:13894001 original size:34 final size:34
Alignment explanation
Indices: 13893958--13894025 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
13893948 ACATTTTTGA
* *
13893958 CACTGTACTGAGATGGGCTAAGGCCCAA-ACTGT
1 CACTGTACTGAAAAGGGCTAAGGCCCAAGACTGT
*
13893991 CACTGATACTGAAAAGGGCTTAGGCCCAAGACTGT
1 CACTG-TACTGAAAAGGGCTAAGGCCCAAGACTGT
13894026 TCAACTGGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (34 bp):
CACTGTACTGAAAAGGGCTAAGGCCCAAGACTGT
Found at i:13900305 original size:15 final size:16
Alignment explanation
Indices: 13900276--13900310 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
13900266 GTTTTCTTTT
13900276 TCATTTAATTAAATTG
1 TCATTTAATTAAATTG
*
13900292 TCATTTAA-TAAATTT
1 TCATTTAATTAAATTG
13900307 TCAT
1 TCAT
13900311 CTTTTCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (16 bp):
TCATTTAATTAAATTG
Found at i:13901248 original size:25 final size:25
Alignment explanation
Indices: 13901219--13901326 Score: 81
Period size: 25 Copynumber: 4.3 Consensus size: 25
13901209 AGCGATAATT
*
13901219 GGTAAGCTCCTCCGAGCTGAATAAC
1 GGTAAGCTCATCCGAGCTGAATAAC
* ** * *
13901244 GGTAAGCTGATATGAGTTGAATATC
1 GGTAAGCTCATCCGAGCTGAATAAC
* * * *
13901269 GGTAAGCTCCTCCAAGCTGGATAAT
1 GGTAAGCTCATCCGAGCTGAATAAC
* ** * *
13901294 GGAAAGCTCATGTGAGCTAAATATC
1 GGTAAGCTCATCCGAGCTGAATAAC
13901319 GGTAAGCT
1 GGTAAGCT
13901327 TCTGCAAGTT
Statistics
Matches: 58, Mismatches: 25, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (25 bp):
GGTAAGCTCATCCGAGCTGAATAAC
Found at i:13901301 original size:50 final size:50
Alignment explanation
Indices: 13901219--13901344 Score: 153
Period size: 50 Copynumber: 2.5 Consensus size: 50
13901209 AGCGATAATT
* * * * * *
13901219 GGTAAGCTCCTCCGAGCTGAATAACGGTAAGCTGATATGAGTTGAATATC
1 GGTAAGCTCCTCCAAGCTGGATAACGGAAAGCTCATATGAGCTAAATATC
* *
13901269 GGTAAGCTCCTCCAAGCTGGATAATGGAAAGCTCATGTGAGCTAAATATC
1 GGTAAGCTCCTCCAAGCTGGATAACGGAAAGCTCATATGAGCTAAATATC
* * *
13901319 GGTAAGCTTCTGCAAGTTGGATAACG
1 GGTAAGCTCCTCCAAGCTGGATAACG
13901345 ATAACCTCAT
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 64 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (50 bp):
GGTAAGCTCCTCCAAGCTGGATAACGGAAAGCTCATATGAGCTAAATATC
Found at i:13901354 original size:50 final size:50
Alignment explanation
Indices: 13901263--13901361 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
13901253 ATATGAGTTG
* * *
13901263 AATATCGGTAAGCTCCTCCAAGCTGGATAATGGAAAGCTCATGTGAGCTA
1 AATATCGGTAAGCTCCTCCAAGCTGGATAATCGAAACCTCATGAGAGCTA
* * *
13901313 AATATCGGTAAGCTTCTGCAAGTTGGATAA-CGATAACCTCATGAGAGCT
1 AATATCGGTAAGCTCCTCCAAGCTGGATAATCGA-AACCTCATGAGAGCT
13901362 GTGGTGAGTC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 2 0.05
50 40 0.95
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (50 bp):
AATATCGGTAAGCTCCTCCAAGCTGGATAATCGAAACCTCATGAGAGCTA
Found at i:13911602 original size:26 final size:26
Alignment explanation
Indices: 13911566--13911617 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13911556 TCAAGTTGTA
13911566 AATAAGAAAAAAATCTCTAGAAATCT
1 AATAAGAAAAAAATCTCTAGAAATCT
13911592 AATAAGAAAAAAATCTCTAGAAATCT
1 AATAAGAAAAAAATCTCTAGAAATCT
13911618 TCTGAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.58, C:0.12, G:0.08, T:0.23
Consensus pattern (26 bp):
AATAAGAAAAAAATCTCTAGAAATCT
Found at i:13911851 original size:62 final size:58
Alignment explanation
Indices: 13911758--13911954 Score: 200
Period size: 67 Copynumber: 3.2 Consensus size: 58
13911748 CACTTTAATA
* * *
13911758 TAAATTATTATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATCTTAT
1 TAAATTAATAAAATAC-TATCAAGATAAATATTAAATTAAATTTAATATTAAATCTTAT
*
13911817 TAAATTAATAGAATATTTATCTA-CAAGATAAATATTAAATTAAATTAAATATTAAATAACCACT
1 TAAATTAATA-AA-A--TA-CTATCAAGATAAATATTAAATTAAATTTAATATTAAAT-----C-
13911881 TTAATAT
55 -T--TAT
13911888 TAAATTAATAAAATACTATCAAGATAAATATTAAATTAAATTTAATATTAAATC-TAT
1 TAAATTAATAAAATACTATCAAGATAAATATTAAATTAAATTTAATATTAAATCTTAT
*
13911945 TAAAATAATA
1 TAAATTAATA
13911955 TTATTTTTTG
Statistics
Matches: 117, Mismatches: 6, Indels: 32
0.75 0.04 0.21
Matches are distributed among these distances:
57 12 0.10
59 9 0.08
60 1 0.01
61 1 0.01
62 33 0.28
63 4 0.03
64 1 0.01
66 3 0.03
67 36 0.31
69 2 0.02
70 2 0.02
71 13 0.11
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.40
Consensus pattern (58 bp):
TAAATTAATAAAATACTATCAAGATAAATATTAAATTAAATTTAATATTAAATCTTAT
Found at i:13912290 original size:20 final size:19
Alignment explanation
Indices: 13912276--13912313 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
13912266 GATTTTACAT
*
13912276 TCTCATGCCCAATTTTCAA
1 TCTCAGGCCCAATTTTCAA
*
13912295 TCTCAGGTCCAATTTTCAA
1 TCTCAGGCCCAATTTTCAA
13912314 GTTCAATTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.29, G:0.08, T:0.37
Consensus pattern (19 bp):
TCTCAGGCCCAATTTTCAA
Found at i:13917418 original size:27 final size:26
Alignment explanation
Indices: 13917376--13917427 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
13917366 GTGAGGCTGC
*
13917376 CAGATATTGTGATGAAGTCACCAGAA
1 CAGATATTGTGATGAAGCCACCAGAA
*
13917402 CAGATATATGTGGTGAAGCCACCAGA
1 CAGATAT-TGTGATGAAGCCACCAGA
13917428 TTACAGTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGATGAAGCCACCAGAA
Found at i:13919597 original size:32 final size:33
Alignment explanation
Indices: 13919530--13919602 Score: 96
Period size: 33 Copynumber: 2.2 Consensus size: 33
13919520 TGGAAAAACT
* *
13919530 AATATTTTCTAGTGTTTGGATGAATTCGTGTAA
1 AATATTTTCTAGTGTTTGGATAAATTCCTGTAA
*
13919563 AATATTTTCTATTGTTTGGA-AAATTCCT-TAAA
1 AATATTTTCTAGTGTTTGGATAAATTCCTGT-AA
13919595 AATATTTT
1 AATATTTT
13919603 ATAAAAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 1 0.03
32 16 0.44
33 19 0.53
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.48
Consensus pattern (33 bp):
AATATTTTCTAGTGTTTGGATAAATTCCTGTAA
Found at i:13921118 original size:31 final size:31
Alignment explanation
Indices: 13921083--13921145 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
13921073 ATCAGTCCAC
13921083 ATAGTTTGTGCAATTTCCTCTCTCTTAGTAG
1 ATAGTTTGTGCAATTTCCTCTCTCTTAGTAG
*
13921114 ATAGTTTGTGCAATTTCTTCTCTCTTAGTAG
1 ATAGTTTGTGCAATTTCCTCTCTCTTAGTAG
13921145 A
1 A
13921146 CTATTCTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.21, C:0.17, G:0.16, T:0.46
Consensus pattern (31 bp):
ATAGTTTGTGCAATTTCCTCTCTCTTAGTAG
Found at i:13922208 original size:30 final size:30
Alignment explanation
Indices: 13922172--13922231 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
13922162 AGATAGAAAA
13922172 ATTTGACACAGAAATTTAAAGTGGTTCGGC
1 ATTTGACACAGAAATTTAAAGTGGTTCGGC
13922202 ATTTGACACAGAAATTTAAAGTGGTTCGGC
1 ATTTGACACAGAAATTTAAAGTGGTTCGGC
13922232 CCAAATTGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.30
Consensus pattern (30 bp):
ATTTGACACAGAAATTTAAAGTGGTTCGGC
Found at i:13922280 original size:57 final size:57
Alignment explanation
Indices: 13922216--13922328 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
13922206 GACACAGAAA
13922216 TTTAAAGTGGTTCGGCCCAAATTGCCTACTACACTACCATAGCTTTCCACTACTAAT
1 TTTAAAGTGGTTCGGCCCAAATTGCCTACTACACTACCATAGCTTTCCACTACTAAT
* * *
13922273 TTTAAAGTGGTTCGGCCCCAGTTGCCTACTCCACTACCATAGCTTTCCACTACTAA
1 TTTAAAGTGGTTCGGCCCAAATTGCCTACTACACTACCATAGCTTTCCACTACTAA
13922329 CGATTTTCCC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (57 bp):
TTTAAAGTGGTTCGGCCCAAATTGCCTACTACACTACCATAGCTTTCCACTACTAAT
Found at i:13925879 original size:15 final size:15
Alignment explanation
Indices: 13925859--13925889 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
13925849 AATTACAAAT
*
13925859 ATGTAGCTCAAAAAC
1 ATGTAGATCAAAAAC
13925874 ATGTAGATCAAAAAC
1 ATGTAGATCAAAAAC
13925889 A
1 A
13925890 CGATAACTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.16, G:0.13, T:0.19
Consensus pattern (15 bp):
ATGTAGATCAAAAAC
Found at i:13928382 original size:35 final size:35
Alignment explanation
Indices: 13928298--13928458 Score: 164
Period size: 35 Copynumber: 4.6 Consensus size: 35
13928288 AATACTCAAG
* *
13928298 GTTCATTATATCATCACATATGGCCAAATATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
* * *
13928333 G-ACAATATATCATCATATATGACCGAATATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
* * * * **
13928367 GCTCAATATAACATCACATGT-AGTCAAATATTGAA
1 GTTCAATATATCATCACATATGA-CCAAATATACAA
* * * *
13928402 GTTTAATATAACATCACATGTGGCCAAATATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
13928437 GTTCAATATATCATCACATATG
1 GTTCAATATATCATCACATATG
13928459 TACATACCTA
Statistics
Matches: 101, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
34 30 0.30
35 71 0.70
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (35 bp):
GTTCAATATATCATCACATATGACCAAATATACAA
Found at i:13932358 original size:22 final size:22
Alignment explanation
Indices: 13932307--13932351 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
13932297 CATTAGTAAG
13932307 TCTGAATGGCATAACTAGAAAC
1 TCTGAATGGCATAACTAGAAAC
13932329 TCTGAATGGCATAACTAGAAAC
1 TCTGAATGGCATAACTAGAAAC
13932351 T
1 T
13932352 TATAATGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (22 bp):
TCTGAATGGCATAACTAGAAAC
Found at i:13935962 original size:35 final size:35
Alignment explanation
Indices: 13935910--13936070 Score: 180
Period size: 35 Copynumber: 4.6 Consensus size: 35
13935900 AATACTCAAG
* *
13935910 GTTCATTATATCTTCACATATTGCCAAATATACAA
1 GTTCAATATATCATCACATATTGCCAAATATACAA
* *
13935945 GTACAATATATCATCACATA-TGACCGAATATACAA
1 GTTCAATATATCATCACATATTG-CCAAATATACAA
* * * * * *
13935980 GCTCAATATAACATCACATGTAGTCAAATATTCAA
1 GTTCAATATATCATCACATATTGCCAAATATACAA
* * * *
13936015 GTTTAATATAACATCACATGTGGCCAAATATACAA
1 GTTCAATATATCATCACATATTGCCAAATATACAA
13936050 GTTCAATATATCATCACATAT
1 GTTCAATATATCATCACATAT
13936071 GTACATACCT
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
34 2 0.02
35 101 0.97
36 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (35 bp):
GTTCAATATATCATCACATATTGCCAAATATACAA
Found at i:13940918 original size:20 final size:20
Alignment explanation
Indices: 13940881--13940918 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
13940871 ATTGAATATG
*
13940881 AATTATATTTAATTGATTTA
1 AATTATATTTAATAGATTTA
13940901 AATT-TATTTGAATAGATT
1 AATTATATTT-AATAGATT
13940919 CGGTTAGACC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (20 bp):
AATTATATTTAATAGATTTA
Found at i:13941238 original size:25 final size:25
Alignment explanation
Indices: 13941191--13941260 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
13941181 TTTAAGCTAT
*
13941191 TATGAGCTTACCGA-TACTCAGCTCA
1 TATGAGCTTACC-ATTATTCAGCTCA
* *
13941216 TATGAGCTTACCATTATTTAGCTTA
1 TATGAGCTTACCATTATTCAGCTCA
*
13941241 GATGAGCTTACCATTATTCA
1 TATGAGCTTACCATTATTCA
13941261 ACTCGGAGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 1 0.03
25 38 0.97
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (25 bp):
TATGAGCTTACCATTATTCAGCTCA
Found at i:13947155 original size:27 final size:26
Alignment explanation
Indices: 13947125--13947179 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
13947115 AGTTAATAAA
* **
13947125 TTCTCTTTGAGTTTTCTTTTTAAGAAT
1 TTCTC-TTGAGTTTCCTTTAGAAGAAT
13947152 TTCTCTTGAGTTTCCTTTAGAAGAAT
1 TTCTCTTGAGTTTCCTTTAGAAGAAT
13947178 TT
1 TT
13947180 TAACAATCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.55
Consensus pattern (26 bp):
TTCTCTTGAGTTTCCTTTAGAAGAAT
Found at i:13948057 original size:33 final size:33
Alignment explanation
Indices: 13948020--13948086 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
13948010 GATACATTTG
13948020 AGGCCAATTTGACTAAGTGTCAAACGAAACTAC
1 AGGCCAATTTGACTAAGTGTCAAACGAAACTAC
* * *
13948053 AGGCCAATTTGACTAAGTTTCGAACGGAACTAC
1 AGGCCAATTTGACTAAGTGTCAAACGAAACTAC
13948086 A
1 A
13948087 AGAGAACATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.22
Consensus pattern (33 bp):
AGGCCAATTTGACTAAGTGTCAAACGAAACTAC
Found at i:13950976 original size:20 final size:21
Alignment explanation
Indices: 13950951--13950990 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
13950941 TTCTTGAAAG
13950951 AAGGC-ATACGCCCGTGTGGA
1 AAGGCAATACGCCCGTGTGGA
13950971 AAGGCAATACGCCCGTGTGG
1 AAGGCAATACGCCCGTGTGG
13950991 TCGTTATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.15
Consensus pattern (21 bp):
AAGGCAATACGCCCGTGTGGA
Found at i:13958376 original size:28 final size:29
Alignment explanation
Indices: 13958345--13958404 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
13958335 GATTTTTAGT
*
13958345 AAAAATGCATATT-AGGGATTAAATTGAG
1 AAAAATGCAAATTGAGGGATTAAATTGAG
* * *
13958373 AAAAGTGTAAATTGAGGGATTAAATTGTG
1 AAAAATGCAAATTGAGGGATTAAATTGAG
13958402 AAA
1 AAA
13958405 TAAATGAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.47, C:0.02, G:0.23, T:0.28
Consensus pattern (29 bp):
AAAAATGCAAATTGAGGGATTAAATTGAG
Found at i:13970314 original size:66 final size:68
Alignment explanation
Indices: 13970185--13970314 Score: 149
Period size: 66 Copynumber: 1.9 Consensus size: 68
13970175 GGGATGTATC
* * *
13970185 CCATGAGACAAGAGAGCTACGAGAGAGGGTAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGA
1 CCATGAGACAAGAGAGCTAC-AGAGA--GTAAATGTAGCTAGGTCACATGGGTGATACCAAGTGA
13970250 AGGACA
63 AGGACA
* * *
13970256 CCATGTAGACAAGAGAGCTAC-GAGA-TAAAT-TGGCTAGGTCACATGGGTGGTACTAAGTG
1 CCATG-AGACAAGAGAGCTACAGAGAGTAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
13970315 TTCACCATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
66 23 0.44
67 5 0.10
70 4 0.08
71 5 0.10
72 15 0.29
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.20
Consensus pattern (68 bp):
CCATGAGACAAGAGAGCTACAGAGAGTAAATGTAGCTAGGTCACATGGGTGATACCAAGTGAAGG
ACA
Found at i:13970791 original size:21 final size:21
Alignment explanation
Indices: 13970754--13970797 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
13970744 CCCGGTTCTT
* *
13970754 ATTTTGAAAAATCATTAA-AA
1 ATTTTAAAAAATAATTAAGAA
13970774 ATTTTAAAAAACTAATTAAGAA
1 ATTTTAAAAAA-TAATTAAGAA
13970796 AT
1 AT
13970798 ATAGTTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.50
21 6 0.30
22 4 0.20
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.34
Consensus pattern (21 bp):
ATTTTAAAAAATAATTAAGAA
Found at i:13974447 original size:55 final size:55
Alignment explanation
Indices: 13974388--13974492 Score: 138
Period size: 55 Copynumber: 1.9 Consensus size: 55
13974378 ACCACAGGTG
13974388 TTCCACACGGGCACGTCGAACGCCTGTACTATTTTGGCAAGCTCGACCACAATTC
1 TTCCACACGGGCACGTCGAACGCCTGTACTATTTTGGCAAGCTCGACCACAATTC
** * * ** * *
13974443 TTCCACACGGGCGTGTCGTACTCCTGTGTTGTTTTGGCAGGCTCGACCAC
1 TTCCACACGGGCACGTCGAACGCCTGTACTATTTTGGCAAGCTCGACCAC
13974493 GTCCATATCG
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 42 1.00
ACGTcount: A:0.18, C:0.31, G:0.24, T:0.27
Consensus pattern (55 bp):
TTCCACACGGGCACGTCGAACGCCTGTACTATTTTGGCAAGCTCGACCACAATTC
Found at i:13977405 original size:5 final size:5
Alignment explanation
Indices: 13977395--13977423 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
13977385 TAATAATAAT
13977395 AATTA AATTA AATTA AATTA AATTA AATT
1 AATTA AATTA AATTA AATTA AATTA AATT
13977424 TCAAGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
AATTA
Found at i:13989562 original size:49 final size:50
Alignment explanation
Indices: 13989490--13989620 Score: 201
Period size: 49 Copynumber: 2.6 Consensus size: 50
13989480 TGTTTATAGT
*
13989490 TTGAAAAACCTTATTCTAATCAATGTCAAATAGATGAAGTGTACT-AAGG
1 TTGAAAAACCTTATTCTAATCAATGTCAAATAGATGAAGTGTACTAAAGA
* *
13989539 TTGAAAAACCTTATTCTCATCAATGTCAAATAGATGAAGTGTAGTAAAGA
1 TTGAAAAACCTTATTCTAATCAATGTCAAATAGATGAAGTGTACTAAAGA
* * *
13989589 TTGAAAAACCTTATTTTAATCTATGTAAAATA
1 TTGAAAAACCTTATTCTAATCAATGTCAAATA
13989621 AAAGTAGTTC
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
49 43 0.58
50 31 0.42
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (50 bp):
TTGAAAAACCTTATTCTAATCAATGTCAAATAGATGAAGTGTACTAAAGA
Found at i:13992112 original size:29 final size:28
Alignment explanation
Indices: 13992080--13992145 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
13992070 AGCTGAAGCT
* *
13992080 ATCCCTTTCATTTTTCGATGGTCGTCACC
1 ATCCCTTTCATTGTT-GATAGTCGTCACC
* *
13992109 ATCCATTTTTATTGTTGATAGTCGTCACC
1 ATCC-CTTTCATTGTTGATAGTCGTCACC
13992138 ATCCCTTT
1 ATCCCTTT
13992146 TTATAATTCG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 3 0.10
29 20 0.65
30 8 0.26
ACGTcount: A:0.17, C:0.27, G:0.12, T:0.44
Consensus pattern (28 bp):
ATCCCTTTCATTGTTGATAGTCGTCACC
Found at i:13992143 original size:118 final size:119
Alignment explanation
Indices: 13991934--13992158 Score: 328
Period size: 118 Copynumber: 1.9 Consensus size: 119
13991924 TTGTCCCAAC
* * *
13991934 CCTTTTCATAGCTCGATAGCCGAAGCTATCTCTTATCATTATTTGATGGTCATCACCATCCCTTT
1 CCTTTTCATAACTCGATAGCCGAAGCTATCCCTTATCATTATTTGATGGTCATCACCATCCATTT
* * *
13991999 TTATTGTTCATGGTCGTCACTATCCCTTTTCATAATTTGATAACCAAAACTATA
66 TTATTGTTCATAGTCGTCACCATCCCTTTTCATAATTCGATAACCAAAACTATA
* * *
13992053 CCTTTTCATAATTCGATAGCTGAAGCTATCCCTT-TCATT-TTTCGATGGTCGTCACCATCCATT
1 CCTTTTCATAACTCGATAGCCGAAGCTATCCCTTATCATTATTT-GATGGTCATCACCATCCATT
* *
13992116 TTTATTGTTGATAGTCGTCACCATCCCTTTTTATAATTCGATA
65 TTTATTGTTCATAGTCGTCACCATCCCTTTTCATAATTCGATA
13992159 GCTGAGGCTA
Statistics
Matches: 94, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
117 3 0.03
118 61 0.65
119 30 0.32
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (119 bp):
CCTTTTCATAACTCGATAGCCGAAGCTATCCCTTATCATTATTTGATGGTCATCACCATCCATTT
TTATTGTTCATAGTCGTCACCATCCCTTTTCATAATTCGATAACCAAAACTATA
Found at i:13997263 original size:19 final size:20
Alignment explanation
Indices: 13997225--13997265 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
13997215 TTTTTTATGT
13997225 AAGTATCGATAAAATAGACCA
1 AAGTATCGAT-AAATAGACCA
*
13997246 AAGTATCGAT-ACTAGACCA
1 AAGTATCGATAAATAGACCA
13997265 A
1 A
13997266 TTGAAGAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
21 10 0.53
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.20
Consensus pattern (20 bp):
AAGTATCGATAAATAGACCA
Found at i:14013186 original size:42 final size:42
Alignment explanation
Indices: 14013138--14013226 Score: 160
Period size: 42 Copynumber: 2.1 Consensus size: 42
14013128 TAACGTGACA
*
14013138 GTGTGTCACTCACGGCTAAGACACACTCCCGTGTCTCTGCCC
1 GTGTGTCACACACGGCTAAGACACACTCCCGTGTCTCTGCCC
*
14013180 GTGTGTCACACACGGCTGAGACACACTCCCGTGTCTCTGCCC
1 GTGTGTCACACACGGCTAAGACACACTCCCGTGTCTCTGCCC
14013222 GTGTG
1 GTGTG
14013227 GACAAAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.16, C:0.36, G:0.25, T:0.24
Consensus pattern (42 bp):
GTGTGTCACACACGGCTAAGACACACTCCCGTGTCTCTGCCC
Found at i:14017304 original size:39 final size:39
Alignment explanation
Indices: 14017255--14017409 Score: 145
Period size: 39 Copynumber: 4.0 Consensus size: 39
14017245 TAAACTCGGT
* * *
14017255 ATAATACCAGCTCGAAGCCTGCGAGA-CTTTAGCCCGGAC
1 ATAATTCCAGCACGAAGCCTGCG-GACCTTAAGCCCGGAC
* * * *
14017294 ATATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGAT
1 ATAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGAC
* * *
14017333 ATAATTCCAGCAC-ATAGCCTGCGGACCCTAAGTCCGGAT
1 ATAATTCCAGCACGA-AGCCTGCGGACCTTAAGCCCGGAC
* * *
14017372 ATAATTCCAGCAC-ATAGCCTGCAGACCCTAAGTCCGGA
1 ATAATTCCAGCACGA-AGCCTGCGGACCTTAAGCCCGGA
14017410 TATACATCAC
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
38 2 0.02
39 101 0.98
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (39 bp):
ATAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGAC
Found at i:14017336 original size:78 final size:78
Alignment explanation
Indices: 14017254--14017413 Score: 198
Period size: 78 Copynumber: 2.1 Consensus size: 78
14017244 TTAAACTCGG
* * * * * *
14017254 TATAATACCAGCTCGA-AGCCTGCGAGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGCG
1 TATAATACCAGCAC-ATAGCCTGCG-GACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCA
*
14017317 GACCTTAAGTCCGGA
64 GACCCTAAGTCCGGA
* * *
14017332 TATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCAGA
1 TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCAGA
14017397 CCCTAAGTCCGGA
66 CCCTAAGTCCGGA
14017410 TATA
1 TATA
14017414 CATCACTGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
77 3 0.04
78 67 0.96
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCAGA
CCCTAAGTCCGGA
Found at i:14017410 original size:39 final size:39
Alignment explanation
Indices: 14017288--14017413 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
14017278 AGACTTTAGC
* * * *
14017288 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
14017327 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
14017366 CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
14017405 CCGGATATA
1 CCGGATATA
14017414 CATCACTGAA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:14022738 original size:39 final size:39
Alignment explanation
Indices: 14022695--14022820 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
14022685 GGACTTTAGC
* * * *
14022695 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
14022734 CCGGATATAATTCCAGCACATAGCATGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
14022773 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
14022812 CCGGATATA
1 CCGGATATA
14022821 CATCACTGAA
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:14023366 original size:21 final size:20
Alignment explanation
Indices: 14023327--14023366 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14023317 TTTGTTCTTC
*
14023327 TTTTCTTATTTCAATTAATA
1 TTTTCTTATTTCAAATAATA
*
14023347 TTTTTTTATTTCAAAATAAT
1 TTTTCTTATTTC-AAATAAT
14023367 GCAAATTCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTCTTATTTCAAATAATA
Found at i:14029029 original size:4 final size:4
Alignment explanation
Indices: 14029022--14029049 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
14029012 CATGCATTCG
14029022 TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA
14029050 CGCATGCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:14034278 original size:29 final size:31
Alignment explanation
Indices: 14034220--14034278 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
14034210 AAATTTCATG
* *
14034220 TATATATTTGAATCACAATCAAAGTTTAATA
1 TATATAATTGAATCACAATCAAAGTATAATA
*
14034251 TATATAATTGCATCA-AATCAAAG-ATAAT
1 TATATAATTGAATCACAATCAAAGTATAAT
14034279 GAATTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 8 0.32
31 13 0.52
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.36
Consensus pattern (31 bp):
TATATAATTGAATCACAATCAAAGTATAATA
Found at i:14038976 original size:25 final size:25
Alignment explanation
Indices: 14038940--14038988 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
14038930 CTTTATATAT
*
14038940 ATATTTTTTATATAATTTATTTTAA
1 ATATTTTGTATATAATTTATTTTAA
*
14038965 ATATTTTGTATATTATTTATTTTA
1 ATATTTTGTATATAATTTATTTTA
14038989 CTTTAAACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (25 bp):
ATATTTTGTATATAATTTATTTTAA
Found at i:14039075 original size:20 final size:21
Alignment explanation
Indices: 14039046--14039094 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
14039036 TTTCTACTAT
14039046 TTAT-TATATTATTTA-TAT-
1 TTATGTATATTATTTATTATA
14039064 TTATTGTATATTATTTATTATA
1 TTA-TGTATATTATTTATTATA
14039086 TTATGTATA
1 TTATGTATA
14039095 ATTTTAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 3 0.11
19 1 0.04
20 11 0.41
21 9 0.33
22 3 0.11
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (21 bp):
TTATGTATATTATTTATTATA
Found at i:14039084 original size:23 final size:23
Alignment explanation
Indices: 14039047--14039094 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 23
14039037 TTCTACTATT
14039047 TATTATATTATTTATATTTATTGTA
1 TATTATATTATTTATA-TTA-TGTA
14039072 TATTAT-TTA-TTATATTATGTA
1 TATTATATTATTTATATTATGTA
14039093 TA
1 TA
14039095 ATTTTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 6 0.26
22 3 0.13
23 5 0.22
24 3 0.13
25 6 0.26
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (23 bp):
TATTATATTATTTATATTATGTA
Found at i:14039153 original size:15 final size:15
Alignment explanation
Indices: 14039114--14039154 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
14039104 TTTGTGAATT
14039114 ATTATTAAATATTAC
1 ATTATTAAATATTAC
* *
14039129 ATTTTTATATA-T-C
1 ATTATTAAATATTAC
14039142 ATTATTAAATATT
1 ATTATTAAATATT
14039155 TAGTATGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATTAAATATTAC
Found at i:14039495 original size:18 final size:18
Alignment explanation
Indices: 14039472--14039506 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14039462 ATCTCATAAA
14039472 TTATTTATTATTTTTATG
1 TTATTTATTATTTTTATG
*
14039490 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
14039507 ATATATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:14039660 original size:67 final size:64
Alignment explanation
Indices: 14039577--14039729 Score: 173
Period size: 67 Copynumber: 2.3 Consensus size: 64
14039567 TTATTGTACA
* *
14039577 TATATTATGTAATTTATATTGTTATAT-TCATTGTTTTCTATGTTGTATTTTGCATGAAATGTTA
1 TATATTATGTAATTTATATTGTTATATATCA-T-TTTT-TATATTATA-TTTGCATGAAATGTTA
*
14039641 ATG
62 AAG
* * *
14039644 TATATTATGTAATTTATGTCGTTATTTATCATTTTTTATATTATATTTGCATGAAATGTTAAAG
1 TATATTATGTAATTTATATTGTTATATATCATTTTTTATATTATATTTGCATGAAATGTTAAAG
* *
14039708 TATGTATCATGTAGTTTATATT
1 TA--TATTATGTAATTTATATT
14039730 ATTTAGTATT
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
64 20 0.27
65 7 0.10
66 18 0.25
67 25 0.34
68 3 0.04
ACGTcount: A:0.29, C:0.05, G:0.12, T:0.54
Consensus pattern (64 bp):
TATATTATGTAATTTATATTGTTATATATCATTTTTTATATTATATTTGCATGAAATGTTAAAG
Found at i:14051356 original size:45 final size:44
Alignment explanation
Indices: 14051220--14051715 Score: 268
Period size: 45 Copynumber: 11.0 Consensus size: 44
14051210 TAGACAGGGA
* *
14051220 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCATATC
1 GAAGATAGCAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
* * * * *
14051265 GAA-AGT-GATAGATTTGA-AGTCTCTGTATTAGA-CGGGGAGCAGATC
1 GAAGA-TAG-CAGATTTGACATTCTGTGT-TTACATC--GAAGCAGATC
* *
14051310 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAAATC
1 GAAGATAGCAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
* * *
14051355 GAAGAT-GACAG-TTTGGCATCTCTGT-ATTAGA-CGGGAAGCAGATC
1 GAAGATAG-CAGATTTGACAT-TCTGTGTTTACATC--GAAGCAGATC
* *
14051399 GAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGTAGATC
1 GAAGATAGCAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
* * ** ** *
14051444 -ACAGAT-GACAGGTTTGGCATCTCTGTAGTAGAC-GGGGAGCAGATC
1 GA-AGATAG-CAGATTTGACAT-TCTGT-GTTTACATCGAAGCAGATC
* *
14051489 AAAGATAGCAGATTTGACATTCGTGTGTTTACATCGAAGTAGATC
1 GAAGATAGCAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
*** * ** * * *
14051534 GAAGAT-GACAGATTTGGGGTTTCTGTATCAGACA-GGCAGTAGATC
1 GAAGATAG-CAGATTT-GACATTCTGTGT-TTACATCGAAGCAGATC
* * *
14051579 GAAGGTAGCAGATCTGACATTCGTGTGTTTACATCAAAGCAGATC
1 GAAGATAGCAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
* * * * * *
14051624 GAAGAT-GATAGATTTGGC-GTCTTTGTATTAGA-CGGGGAGCAGATC
1 GAAGATAG-CAGATTTGACATTCTGTGT-TTACATC--GAAGCAGATC
*
14051669 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATC
1 GAAGATAGCAGATTTGACATTC-TGTGTTTACATCGAAGCAGATC
14051714 GA
1 GA
14051716 GGATGACAAA
Statistics
Matches: 332, Mismatches: 78, Indels: 82
0.67 0.16 0.17
Matches are distributed among these distances:
42 1 0.00
43 14 0.04
44 62 0.19
45 208 0.63
46 36 0.11
47 11 0.03
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (44 bp):
GAAGATAGCAGATTTGACATTCTGTGTTTACATCGAAGCAGATC
Found at i:14051509 original size:90 final size:90
Alignment explanation
Indices: 14051220--14051764 Score: 774
Period size: 90 Copynumber: 6.1 Consensus size: 90
14051210 TAGACAGGGA
* * *
14051220 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCATATCGAA-AGTGATAGATTT-GAA
1 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGA-TGACAGATTTGGCA
14051283 GTCTCTGTATTAGACGGGGAGCAGATC
65 -TCTCTGTATTAGACGGGGAGCAGATC
*
14051310 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAAATCGAAGATGACAG-TTTGGCAT
1 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCAT
*
14051374 CTCTGTATTAGACGGGAAGCAGATC
66 CTCTGTATTAGACGGGGAGCAGATC
* * *
14051399 GAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGTAGATC-ACAGATGACAGGTTTGGCA
1 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGA-AGATGACAGATTTGGCA
*
14051463 TCTCTGTAGTAGACGGGGAGCAGATC
65 TCTCTGTATTAGACGGGGAGCAGATC
* * * **
14051489 AAAGATAGCAGATTTGACATTCGTGTGTTTACATCGAAGTAGATCGAAGATGACAGATTTGGGGT
1 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCAT
* * * * *
14051554 TTCTGTATCAGACAGGCAGTAGATC
66 CTCTGTATTAGACGGGGAGCAGATC
* * * *
14051579 GAAGGTAGCAGATCTGACATTCGTGTGTTTACATCAAAGCAGATCGAAGATGATAGATTTGGCGT
1 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCAT
*
14051644 CTTTGTATTAGACGGGGAGCAGATC
66 CTCTGTATTAGACGGGGAGCAGATC
* * *
14051669 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAGGATGACAAATTTGGCGT
1 GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCAT
*
14051734 CTCTGTATTAGGCGGGGAGCAGATC
66 CTCTGTATTAGACGGGGAGCAGATC
*
14051759 AAAGAT
1 GAAGAT
14051765 TTCAGCATGG
Statistics
Matches: 408, Mismatches: 42, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
88 1 0.00
89 79 0.19
90 326 0.80
91 2 0.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (90 bp):
GAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCAT
CTCTGTATTAGACGGGGAGCAGATC
Found at i:14053366 original size:25 final size:25
Alignment explanation
Indices: 14053330--14053378 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
14053320 CTTTATATAT
*
14053330 ATATTTTTTATATAATTTATTTTAA
1 ATATTTTGTATATAATTTATTTTAA
*
14053355 ATATTTTGTATATTATTTATTTTA
1 ATATTTTGTATATAATTTATTTTA
14053379 CTTTAAACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (25 bp):
ATATTTTGTATATAATTTATTTTAA
Found at i:14053449 original size:12 final size:12
Alignment explanation
Indices: 14053432--14053479 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
14053422 TTTTTTCTAC
14053432 TATTTATTATAT
1 TATTTATTATAT
*
14053444 TATTTA-TATTT
1 TATTTATTATAT
*
14053455 TA-TT-GTATAT
1 TATTTATTATAT
14053465 TATTTATTATAT
1 TATTTATTATAT
14053477 TAT
1 TAT
14053480 GTATAATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
10 8 0.27
11 8 0.27
12 14 0.47
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (12 bp):
TATTTATTATAT
Found at i:14053465 original size:21 final size:21
Alignment explanation
Indices: 14053435--14053484 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
14053425 TTTCTACTAT
*
14053435 TTAT-TATATTATTTA-TATT
1 TTATGTATATTATTTATTATA
14053454 TTATTGTATATTATTTATTATA
1 TTA-TGTATATTATTTATTATA
14053476 TTATGTATA
1 TTATGTATA
14053485 ATTTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 3 0.11
20 1 0.04
21 17 0.63
22 6 0.22
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (21 bp):
TTATGTATATTATTTATTATA
Found at i:14053543 original size:15 final size:15
Alignment explanation
Indices: 14053504--14053544 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
14053494 TTTGTGAATT
14053504 ATTATTAAATATTAC
1 ATTATTAAATATTAC
* *
14053519 ATTTTTATATA-T-C
1 ATTATTAAATATTAC
14053532 ATTATTAAATATT
1 ATTATTAAATATT
14053545 TAGTATGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATTAAATATTAC
Found at i:14053885 original size:18 final size:18
Alignment explanation
Indices: 14053862--14053896 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14053852 ATCTCATAAA
14053862 TTATTTATTATTTTTATG
1 TTATTTATTATTTTTATG
*
14053880 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
14053897 ATATATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:14056097 original size:423 final size:423
Alignment explanation
Indices: 14055297--14056552 Score: 1992
Period size: 423 Copynumber: 3.0 Consensus size: 423
14055287 ATATGTTAAA
* * * * *
14055297 AACTTCAAATGCACGTCTTCCTCTTTGGTCGGGAGTTCCAATGTTTCGGATAATGATCCTGTTAA
1 AACTCCAAATCCACGTCTTCCTATTTGGTCAGGAGTTCCAATGTTTCGAATAATGATCCTGTTAA
* * * * * * *
14055362 TTCTGGTTTGTATCAACTCAATGTTAATAGGGCTGATTTGGGAAGAGCATATGATGAGAGTGGTG
66 TTCTAGTTTGCATCAACTCAATGTTAATAGGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
* * * * *
14055427 ATTATAATCGATACTTAAGTGAATCCAATACTAAGAGTGAAAAGTCAAAGTTAAACATTTATTTG
131 GTTATAATCAATACTTAAGTGAATGCAATACTAAGAGTGAAAAGTCATAGTTGAACATTTATTTG
** * * * * *
14055492 GAAGAATTAGAGCTTGAGTTAAATAGCCAAATAGATGTATTGGATTACTGGAGCAAAACTTCAAT
196 GAAGAACCAAAGCTTAAGTTGAATAGCCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
* * * * * *
14055557 TCAATATCATGAGCTTTCATTATTGGCTCGTTATCTTTTAGTAATTCCAATATCGACTGTAGCTT
261 TTAATAGCATGAGCTTTCATTATTGGCTCATGATCTTTTGGCAATTCCAATATCGACTGTAGCTT
* * *
14055622 TCGAGTTGGCTTTTAGCAT-GAGGAAGAAAGCTATCACAACTTCGAAGAGTTCACATAAACCAAA
326 TCAAGTTGGCTTTTAGCATGGA-GAAGAAAGTTATCACAACTTTGAAGAGTTCACATAAACCAAA
14055686 ACTGGTTCAAGTTGTTGTTTGCTTTGATGACTGG
390 ACTGGTTCAAGTTGTTGTTTGCTTTGATGACTGG
* *
14055720 AACTCCAAATCCATGTCTTCCTATTTGGTCAGGAGTTCCAATGTTTCGAATAATGATCATGTTAA
1 AACTCCAAATCCACGTCTTCCTATTTGGTCAGGAGTTCCAATGTTTCGAATAATGATCCTGTTAA
14055785 TTCTAGTTTGCATCAACTCAATGTTAATAGGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
66 TTCTAGTTTGCATCAACTCAATGTTAATAGGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
*
14055850 GTTATAATCAATACTTAAGTGAATGCAATACTAAAAGTGAAAAGTCATAGTTGAACATTTATTTG
131 GTTATAATCAATACTTAAGTGAATGCAATACTAAGAGTGAAAAGTCATAGTTGAACATTTATTTG
14055915 GAAGAACCAAAGCTTAAGTTGAATAGCCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
196 GAAGAACCAAAGCTTAAGTTGAATAGCCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
*
14055980 TTGATAGCATGAGCTTTCATTATTGGCTCATGATCTTTTGGCAATTCCAATATCGACTGTAGCTT
261 TTAATAGCATGAGCTTTCATTATTGGCTCATGATCTTTTGGCAATTCCAATATCGACTGTAGCTT
* *
14056045 TCAAGTTGGCTTTTAGCATGGAGAAGAAAGTTATCACACCTTTGAAGAGTTCACATAAATCAAAA
326 TCAAGTTGGCTTTTAGCATGGAGAAGAAAGTTATCACAACTTTGAAGAGTTCACATAAACCAAAA
* * * *
14056110 TTAGTTCAATTTGTTGCTTGCTTTGATGACTGG
391 CTGGTTCAAGTTGTTGTTTGCTTTGATGACTGG
*
14056143 AACTCCAAATCCACGTCTTCCTATTTGGTCAGAAGTTCCAATGTTTCGAATAATGATCCTGTTAA
1 AACTCCAAATCCACGTCTTCCTATTTGGTCAGGAGTTCCAATGTTTCGAATAATGATCCTGTTAA
* *
14056208 TTCTTGTTTGCATCAACTCAATGTTAATAAGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
66 TTCTAGTTTGCATCAACTCAATGTTAATAGGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
* *
14056273 GTTATAATCAATACTTAAGTGAATGCAATACTAAGAGTAAAAAGTCATAGTTGAGCATTTATTTG
131 GTTATAATCAATACTTAAGTGAATGCAATACTAAGAGTGAAAAGTCATAGTTGAACATTTATTTG
* *
14056338 GAGGAACCAAAGCTTAAGTTGAATAACCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
196 GAAGAACCAAAGCTTAAGTTGAATAGCCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
* *
14056403 TTTATAGCATGAGCTTTCATTATTGGCTCATGATCGTTTGGCAATTCCAATATCGACTGTAGCTT
261 TTAATAGCATGAGCTTTCATTATTGGCTCATGATCTTTTGGCAATTCCAATATCGACTGTAGCTT
*
14056468 TCAAGTTGGCTTTTAGCATGGAGAAGAAAGTTATCACATCTTTGAAGAGTTCACATAAACCAAAA
326 TCAAGTTGGCTTTTAGCATGGAGAAGAAAGTTATCACAACTTTGAAGAGTTCACATAAACCAAAA
* **
14056533 CTGGTTTAAGCCGTTGTTTG
391 CTGGTTCAAGTTGTTGTTTG
14056553 TTTTTTGGCT
Statistics
Matches: 768, Mismatches: 64, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
423 766 1.00
424 2 0.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.33
Consensus pattern (423 bp):
AACTCCAAATCCACGTCTTCCTATTTGGTCAGGAGTTCCAATGTTTCGAATAATGATCCTGTTAA
TTCTAGTTTGCATCAACTCAATGTTAATAGGGCTGATTTGGGAGGAGAATATGATAAGGGTGATG
GTTATAATCAATACTTAAGTGAATGCAATACTAAGAGTGAAAAGTCATAGTTGAACATTTATTTG
GAAGAACCAAAGCTTAAGTTGAATAGCCAAATAGAAGTATTGGATTATTGGAGCAAAACTTCAAT
TTAATAGCATGAGCTTTCATTATTGGCTCATGATCTTTTGGCAATTCCAATATCGACTGTAGCTT
TCAAGTTGGCTTTTAGCATGGAGAAGAAAGTTATCACAACTTTGAAGAGTTCACATAAACCAAAA
CTGGTTCAAGTTGTTGTTTGCTTTGATGACTGG
Found at i:14058023 original size:18 final size:18
Alignment explanation
Indices: 14057992--14058037 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
14057982 AATATGATGA
14057992 AAAAG-AAA-ATGAAGAG
1 AAAAGAAAAGATGAAGAG
14058008 AAAAGAAAAGATGAAGAG
1 AAAAGAAAAGATGAAGAG
14058026 AAAGAGAAAAGA
1 AAA-AGAAAAGA
14058038 GGGAGGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.19
17 3 0.11
18 11 0.41
19 8 0.30
ACGTcount: A:0.70, C:0.00, G:0.26, T:0.04
Consensus pattern (18 bp):
AAAAGAAAAGATGAAGAG
Found at i:14058671 original size:19 final size:19
Alignment explanation
Indices: 14058647--14058683 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14058637 AATTAATTCA
14058647 ATAATTAATCATA-ATTAAG
1 ATAATTAAT-ATAGATTAAG
14058666 ATAATTAATATAGATTAA
1 ATAATTAATATAGATTAA
14058684 AACCAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (19 bp):
ATAATTAATATAGATTAAG
Found at i:14060564 original size:30 final size:30
Alignment explanation
Indices: 14060528--14060590 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
14060518 ACTTATTTTA
14060528 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
14060558 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
14060588 TTG
1 TTG
14060591 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:14060743 original size:12 final size:12
Alignment explanation
Indices: 14060713--14060745 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
14060703 TATATATTTT
14060713 AAAATT-ATATA
1 AAAATTAATATA
14060724 AAAA-TAATATA
1 AAAATTAATATA
14060735 AAAATTAATAT
1 AAAATTAATAT
14060746 GGGTGGGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:14061931 original size:16 final size:16
Alignment explanation
Indices: 14061910--14061940 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14061900 CATGTTAGAA
14061910 CACATAAATTTGAAAC
1 CACATAAATTTGAAAC
*
14061926 CACATATATTTGAAA
1 CACATAAATTTGAAA
14061941 AAGAATTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.29
Consensus pattern (16 bp):
CACATAAATTTGAAAC
Found at i:14062114 original size:43 final size:42
Alignment explanation
Indices: 14062059--14062158 Score: 98
Period size: 44 Copynumber: 2.4 Consensus size: 42
14062049 TTATATATAT
14062059 TTTTAGAA-TTTTTTTAGAAGT-TTGAGAATTTTTAAAAATATAAA
1 TTTTA-AATTTTTTTTAGAAGTATTGAGAATTTTTAAAAAT-T--A
* * ** *
14062103 TTTT-AATTTTTTATATAAGTATTTTGAATTTTTGAAAATTA
1 TTTTAAATTTTTTTTAGAAGTATTGAGAATTTTTAAAAATTA
14062144 TTTTAAATTTTTTTT
1 TTTTAAATTTTTTTT
14062159 TGTAATTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
41 5 0.11
42 11 0.23
43 12 0.26
44 19 0.40
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (42 bp):
TTTTAAATTTTTTTTAGAAGTATTGAGAATTTTTAAAAATTA
Found at i:14062126 original size:21 final size:20
Alignment explanation
Indices: 14062102--14062156 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
14062092 AAAAATATAA
14062102 ATTTT-AATTTTTTATATAAGT
1 ATTTTAAATTTTTTA-A-AAGT
* * *
14062123 ATTTTGAATTTTTGAAAATT
1 ATTTTAAATTTTTTAAAAGT
14062143 ATTTTAAATTTTTT
1 ATTTTAAATTTTTT
14062157 TTTGTAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 15 0.52
21 6 0.21
22 8 0.28
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (20 bp):
ATTTTAAATTTTTTAAAAGT
Found at i:14068709 original size:32 final size:32
Alignment explanation
Indices: 14068663--14068727 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
14068653 AATGTACTGA
14068663 AAGAATTGGTTTTGATGTGGAACACTAGTCTT
1 AAGAATTGGTTTTGATGTGGAACACTAGTCTT
*
14068695 AAGAGTTGGTTTTGATGTGGAACACTAGTCTT
1 AAGAATTGGTTTTGATGTGGAACACTAGTCTT
14068727 A
1 A
14068728 GTTACTAGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.37
Consensus pattern (32 bp):
AAGAATTGGTTTTGATGTGGAACACTAGTCTT
Found at i:14074793 original size:26 final size:26
Alignment explanation
Indices: 14074749--14074814 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 26
14074739 TTATGTATTT
*
14074749 TATATAAAATTAAATT-AA-ATTAAA
1 TATATAATATTAAATTAAATATTAAA
14074773 TATATAATATTATAATGTAAATATTAAA
1 TATATAATATTA-AAT-TAAATATTAAA
14074801 -ATAT-ATATTAAATT
1 TATATAATATTAAATT
14074815 CTTTATGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
24 12 0.32
25 6 0.16
26 7 0.19
27 6 0.16
28 6 0.16
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (26 bp):
TATATAATATTAAATTAAATATTAAA
Found at i:14074892 original size:18 final size:19
Alignment explanation
Indices: 14074859--14074899 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
14074849 AAAAAATAAG
*
14074859 AAAAGAAAATATTTAATTA
1 AAAAGAAAATAATTAATTA
14074878 AAAAGAAAA-AATTAATTA
1 AAAAGAAAATAATTAATTA
14074896 AAAA
1 AAAA
14074900 TAATATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (19 bp):
AAAAGAAAATAATTAATTA
Found at i:14085768 original size:13 final size:13
Alignment explanation
Indices: 14085750--14085776 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14085740 GAAGTAATCG
14085750 CACACGGGCGTGT
1 CACACGGGCGTGT
14085763 CACACGGGCGTGT
1 CACACGGGCGTGT
14085776 C
1 C
14085777 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:14092478 original size:316 final size:316
Alignment explanation
Indices: 14091905--14092536 Score: 1192
Period size: 316 Copynumber: 2.0 Consensus size: 316
14091895 TTGTGAGTTG
*
14091905 AGGATTTTGCTTGAGGACAAGAAAACGTTTAAGTGTTGGGGTATTTGATAAACCGTAATTTATAC
1 AGGATTTTGCTTGAGGACAAGAAAACGCTTAAGTGTTGGGGTATTTGATAAACCGTAATTTATAC
* * *
14091970 ATATTTTTATCCCATGCTTAGCACATTTATGGATGGTTTCTCTTTAGATTTGGTGAATTCGATGC
66 ATATATTTATCCCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGAATTCGATGC
*
14092035 ACCTAATCCTTTAATTTCTTGTTTTATACTTAGGTGGGCATAGGAGAATAAAAAAGCGAGAAACG
131 ACCTAATCCTTTAATTTCATGTTTTATACTTAGGTGGGCATAGGAGAATAAAAAAGCGAGAAACG
14092100 GGCCGAAAACAAAGAAAATGGACCAACATAAGAAATCAACACGGCCTGGACTTCCTCACACTGGT
196 GGCCGAAAACAAAGAAAATGGACCAACATAAGAAATCAACACGGCCTGGACTTCCTCACACTGGT
*
14092165 AGTCCACACAGCCGTGTCCATTTGGCAGAATCGAAGCACGACTTACACGGGTAGAC
261 AGTCCACACAGCCGTGTCCATTTGGCAGAATCGAAGAACGACTTACACGGGTAGAC
14092221 AGGATTTTGCTTGAGGACAAGAAAACGCTTAAGTGTTGGGGTATTTGATAAACCGTAATTTATAC
1 AGGATTTTGCTTGAGGACAAGAAAACGCTTAAGTGTTGGGGTATTTGATAAACCGTAATTTATAC
14092286 ATATATTTATCCCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGAATTCGATGC
66 ATATATTTATCCCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGAATTCGATGC
14092351 ACCTAATCCTTTAATTTCATGTTTTATACTTAGGTGGGCATAGGAGAATAAAAAAGCGAGAAACG
131 ACCTAATCCTTTAATTTCATGTTTTATACTTAGGTGGGCATAGGAGAATAAAAAAGCGAGAAACG
* *
14092416 GGCCGAAAACGAAGAAAATGGACCAACATAAGAAATCAACACGGCTTGGACTTCCTCACACTGGT
196 GGCCGAAAACAAAGAAAATGGACCAACATAAGAAATCAACACGGCCTGGACTTCCTCACACTGGT
14092481 AGTCCACACAGCCGTGTCCATTTGGCAGAATCGAAGAACGACTTACACGGGTAGAC
261 AGTCCACACAGCCGTGTCCATTTGGCAGAATCGAAGAACGACTTACACGGGTAGAC
14092537 CACATGCTCG
Statistics
Matches: 308, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
316 308 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (316 bp):
AGGATTTTGCTTGAGGACAAGAAAACGCTTAAGTGTTGGGGTATTTGATAAACCGTAATTTATAC
ATATATTTATCCCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGAATTCGATGC
ACCTAATCCTTTAATTTCATGTTTTATACTTAGGTGGGCATAGGAGAATAAAAAAGCGAGAAACG
GGCCGAAAACAAAGAAAATGGACCAACATAAGAAATCAACACGGCCTGGACTTCCTCACACTGGT
AGTCCACACAGCCGTGTCCATTTGGCAGAATCGAAGAACGACTTACACGGGTAGAC
Found at i:14098032 original size:48 final size:48
Alignment explanation
Indices: 14097967--14098307 Score: 619
Period size: 48 Copynumber: 7.1 Consensus size: 48
14097957 GCTGAAATTG
*
14097967 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
14098015 ATGTATGAGATATGTATATGTGGTAAGGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
14098063 ATGTATGAGATAAGTATATGTGGTAAGGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
14098111 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
14098159 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAC
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
14098207 ATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
14098255 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
14098303 ATGTA
1 ATGTA
14098308 GGCGATGTGT
Statistics
Matches: 283, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 283 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:14098562 original size:37 final size:37
Alignment explanation
Indices: 14098454--14098562 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
14098444 GGAAATATAT
*
14098454 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
14098491 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
14098528 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
14098563 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:14101318 original size:43 final size:43
Alignment explanation
Indices: 14101153--14101319 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 43
14101143 CATAAGCTCG
* * * * *
14101153 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
* * * * * * *
14101194 TATCGATACCATTGTCCCAGACAGGGTCTTACACGAAAT-TGAG
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
* *
14101237 TAACGATGCTAATGTCCCAGACATGGTCTTACACGTAATCTCAA
1 T-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
* *
14101281 TACAATGCCAATGTCCTAGACATGGTCTTACATGTAATC
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
14101320 ACATTTCGAT
Statistics
Matches: 98, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
43 87 0.89
44 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
Found at i:14106367 original size:25 final size:25
Alignment explanation
Indices: 14106339--14106387 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
14106329 AATTGAATTT
*
14106339 TAATTATCTTAAATATTTTTTATGA
1 TAATTATCTTAAATATTTTATATGA
*
14106364 TAATTTTCTTAAATATTTTATATG
1 TAATTATCTTAAATATTTTATATG
14106388 GCTTTATTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (25 bp):
TAATTATCTTAAATATTTTATATGA
Found at i:14107312 original size:16 final size:16
Alignment explanation
Indices: 14107293--14107354 Score: 72
Period size: 16 Copynumber: 3.9 Consensus size: 16
14107283 ACCGTAATAG
* *
14107293 AATAGGGCTGTAATTA
1 AATAGAGCTGTAATGA
*
14107309 AATAGAGTTGTAATGA
1 AATAGAGCTGTAATGA
14107325 AATAGAGCTGTAATCG-
1 AATAGAGCTGTAAT-GA
*
14107341 AATAGAGCTATAAT
1 AATAGAGCTGTAAT
14107355 TAGTAACTCA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
16 39 0.98
17 1 0.03
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29
Consensus pattern (16 bp):
AATAGAGCTGTAATGA
Found at i:14107597 original size:61 final size:58
Alignment explanation
Indices: 14107532--14107662 Score: 147
Period size: 61 Copynumber: 2.2 Consensus size: 58
14107522 ATTTAATAAG
* * * * *
14107532 ATTATTATTAGATATATTTTAATAACAATAAAAATAAATAATATAATTATATT-TTAACATA
1 ATTATTATTAAATACAATTTAATAA-AAT---AATAAATAATATAATAACATTCTTAACATA
* * *
14107593 ATTATTATTAAATACAATTTAATAAAATAATATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATACAATTTAATAAAATAATAAATAATATAATAACATTCTTAACATA
14107651 ATTATTATTAAA
1 ATTATTATTAAA
14107663 ATATGAATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
57 17 0.28
58 19 0.31
60 3 0.05
61 22 0.36
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAATACAATTTAATAAAATAATAAATAATATAATAACATTCTTAACATA
Found at i:14112317 original size:48 final size:49
Alignment explanation
Indices: 14112215--14112434 Score: 216
Period size: 48 Copynumber: 4.6 Consensus size: 49
14112205 TGAGATCCCA
* * * *
14112215 TGTAAGACCATGTCTGGGACATGGCATTGGCATCT-AGATGAGATCCCA-
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGATATGTGATGCCAG
* * *
14112263 TATAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTG-TGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGATGCCAG
* * * * * * * **
14112311 TGTAAGACCATGTTTGGAACATGTCATTGACCTCGACGTGTGA-GCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGATGCCAG
* **
14112359 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGATATGTGATTTC-G
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGATGCCAG
*
14112407 TGTAAGACCATGTCTGGGACATTGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
14112435 TTTATGAGAC
Statistics
Matches: 137, Mismatches: 31, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
47 4 0.03
48 132 0.96
49 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGATGCCAG
Found at i:14112339 original size:96 final size:96
Alignment explanation
Indices: 14112215--14112433 Score: 264
Period size: 96 Copynumber: 2.3 Consensus size: 96
14112205 TGAGATCCCA
* *
14112215 TGTAAGACCATGTCTGGGACATGGCATTGGCATCTA-GATGAGATCCCA-TATAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATTGACATCGACG-TGAGA-CCCAGTATAAGACCATGTCT
*
14112278 GGGACATGGCATCGGCGTTGATATGTG-TGCTAG
64 GGGACATGGCATCGGCATTGATATGTGAT-CTAG
* * * * * * *
14112311 TGTAAGACCATGTTTGGAACATGTCATTGACCTCGACGTGTGAGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATTGACATCGACGTGAGACCCAGTATAAGACCATGTCTGG
* * *
14112376 GACATGGCATCGGTATTGATATGTGATTTCG
66 GACATGGCATCGGCATTGATATGTGATCTAG
*
14112407 TGTAAGACCATGTCTGGGACATTGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
14112434 CTTTATGAGA
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
95 3 0.03
96 98 0.95
97 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATTGACATCGACGTGAGACCCAGTATAAGACCATGTCTGG
GACATGGCATCGGCATTGATATGTGATCTAG
Found at i:14114766 original size:185 final size:185
Alignment explanation
Indices: 14114454--14114822 Score: 666
Period size: 185 Copynumber: 2.0 Consensus size: 185
14114444 TAAGATTTAA
14114454 TACGAGAATGTAAAGAAACAGTTTGTACTTTCAAACAGCTAAAGTCACAATAAAAGAGAACTGTT
1 TACGAGAATGTAAAGAAACAGTTTGTACTTTCAAACAGCTAAAGTCACAATAAAAGAGAACTGTT
14114519 CGATTATCAATTTAAAGACAGTCACTTTTATGTCTGTGGTGTGAATTTGATGATATCATGTGTTC
66 CGATTATCAATTTAAAGACAGTCACTTTTATGTCTGTGGTGTGAATTTGATGATATCATGTGTTC
14114584 GAAAGAAAATATCATATGCTTATTGAATCCTAATGGGTTAAAGTATCTAATGTTG
131 GAAAGAAAATATCATATGCTTATTGAATCCTAATGGGTTAAAGTATCTAATGTTG
* * *
14114639 TACGAGAATGTAAAGAAATAGTTTGTACTTTCAGACGGCTAAAGTCACAATAAAAGAGAACTGTT
1 TACGAGAATGTAAAGAAACAGTTTGTACTTTCAAACAGCTAAAGTCACAATAAAAGAGAACTGTT
*
14114704 CGATTATCAATTTAAAGACAGTCACTTTTATGTTTGTGGTGTGAATTTGATGATATCATGTGTTC
66 CGATTATCAATTTAAAGACAGTCACTTTTATGTCTGTGGTGTGAATTTGATGATATCATGTGTTC
* * * *
14114769 GACAGAAAATTTCATATGCTTCTTGAATCCTATTGGGTTAAAGTATCTAATGTT
131 GAAAGAAAATATCATATGCTTATTGAATCCTAATGGGTTAAAGTATCTAATGTT
14114823 ACCGACAAAT
Statistics
Matches: 176, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
185 176 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (185 bp):
TACGAGAATGTAAAGAAACAGTTTGTACTTTCAAACAGCTAAAGTCACAATAAAAGAGAACTGTT
CGATTATCAATTTAAAGACAGTCACTTTTATGTCTGTGGTGTGAATTTGATGATATCATGTGTTC
GAAAGAAAATATCATATGCTTATTGAATCCTAATGGGTTAAAGTATCTAATGTTG
Found at i:14118966 original size:40 final size:40
Alignment explanation
Indices: 14118906--14119042 Score: 139
Period size: 40 Copynumber: 3.4 Consensus size: 40
14118896 TCGAGAATAT
* * *
14118906 AAAGTGGATAGGATTCGTTCCTGATTTACTATAATACCTC
1 AAAGTGGATAGGATTTGTTCCTGATTCACTATAATAACTC
** * *
14118946 AAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAATTT
1 AAAGTGGATAGGATTTGTTCCTGATTCACTATAATAACTC
* * * ** *
14118986 AAAGTGAATAGGATTTATTCCTGATTCACCATGGTAACTT
1 AAAGTGGATAGGATTTGTTCCTGATTCACTATAATAACTC
* *
14119026 AAGGTGGATAGCATTTG
1 AAAGTGGATAGGATTTG
14119043 ATCTCAGAAG
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (40 bp):
AAAGTGGATAGGATTTGTTCCTGATTCACTATAATAACTC
Found at i:14119099 original size:78 final size:78
Alignment explanation
Indices: 14119007--14119158 Score: 232
Period size: 78 Copynumber: 1.9 Consensus size: 78
14118997 GATTTATTCC
* * * *
14119007 TGATTCACCATGGTAACTTAAGGTGGATAGCATTTGATCTCAGAAGGTAATCCTGATTCGCTACA
1 TGATTCACCATGGTAACCTAAGGTGGATAGCATTTGACCTCAAAAGGTAATCCTGATTCACTACA
14119072 GTTACATGATATA
66 GTTACATGATATA
** * *
14119085 TGATTCATTATGGTAACCTAAGGTGGATAGGATTTGACCTGAAAAGGTAATCCTGATTCACTACA
1 TGATTCACCATGGTAACCTAAGGTGGATAGCATTTGACCTCAAAAGGTAATCCTGATTCACTACA
14119150 GTTACATGA
66 GTTACATGA
14119159 GATGTGACTC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 66 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (78 bp):
TGATTCACCATGGTAACCTAAGGTGGATAGCATTTGACCTCAAAAGGTAATCCTGATTCACTACA
GTTACATGATATA
Found at i:14123458 original size:47 final size:47
Alignment explanation
Indices: 14123400--14123791 Score: 655
Period size: 47 Copynumber: 8.4 Consensus size: 47
14123390 CAGCCAAGAC
14123400 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14123447 AGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
14123493 AGTG--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
14123538 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
14123585 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14123632 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14123679 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
14123726 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
14123773 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
14123792 TCCCGAAGGG
Statistics
Matches: 329, Mismatches: 13, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
44 12 0.04
45 31 0.09
46 32 0.10
47 254 0.77
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:14123966 original size:37 final size:37
Alignment explanation
Indices: 14123910--14123988 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
14123900 CCGAGCTCTA
* *
14123910 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
14123947 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14123984 AAGAC
1 AAGAC
14123989 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14125877 original size:40 final size:43
Alignment explanation
Indices: 14125833--14125933 Score: 156
Period size: 44 Copynumber: 2.4 Consensus size: 43
14125823 TTGGTTTTCA
14125833 GCACTAAGTGTGCGGGCAAT-A-G-TTCACGGTTGTGTA-ATTG
1 GCACTAAGTGTGCGGGCAATAAGGTTTCACGGTTGTG-AGATTG
14125873 GCACTAAGTGTGCGGGCAATAAGTGTTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAG-GTTTCACGGTTGTGAGATTG
14125917 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
14125934 TTGAAATGCA
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
40 20 0.36
41 1 0.02
43 2 0.04
44 33 0.59
ACGTcount: A:0.22, C:0.16, G:0.35, T:0.28
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGGTTTCACGGTTGTGAGATTG
Found at i:14125973 original size:28 final size:29
Alignment explanation
Indices: 14125915--14125987 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 29
14125905 GTTGTGAGAT
* *
14125915 TGGCACTAAGTGTGCGGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
*
14125944 TGGCACTAA-TGTGCGAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TACA
14125972 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14125988 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
27 5 0.13
28 19 0.49
29 15 0.38
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATACA
Found at i:14126335 original size:38 final size:38
Alignment explanation
Indices: 14126293--14126522 Score: 296
Period size: 38 Copynumber: 6.1 Consensus size: 38
14126283 ATTGAATGAG
* *
14126293 TCCGGGCTAAGTCCGA-AGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCGAGAGCATTCGTGCT-AGTGA-TATA
* * *
14126331 TCCGGACTAAGTTCCGAAAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAG-TCCGAGAGCATTCGTGCTAGTGATATA
14126370 TCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGT-CCGAGAGCATTCGTGCTAGTGATATA
14126409 TCCGGGCTAAGTCCGAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCGAGAGCATTCGTGCTAGTGATATA
*
14126447 TCC-GGCTAAGTCCCGAGAGCATTCGTGCTAGTG---TG
1 TCCGGGCTAAGT-CCGAGAGCATTCGTGCTAGTGATATA
14126482 TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGT-A-ATA
1 TCCGGGCTAAGTCCG-AGAGCATTCGTGCTAGTGATATA
14126519 TCCG
1 TCCG
14126523 TGCAAACCGA
Statistics
Matches: 174, Mismatches: 9, Indels: 19
0.86 0.04 0.09
Matches are distributed among these distances:
35 7 0.04
36 25 0.14
37 13 0.07
38 61 0.35
39 53 0.30
40 8 0.05
41 7 0.04
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (38 bp):
TCCGGGCTAAGTCCGAGAGCATTCGTGCTAGTGATATA
Found at i:14126424 original size:77 final size:76
Alignment explanation
Indices: 14126293--14126522 Score: 305
Period size: 77 Copynumber: 3.1 Consensus size: 76
14126283 ATTGAATGAG
* *
14126293 TCCGGGCTAAGT-CCGA-AGC-TTTGTGCTAAGTGACCATATCCGGACTAAGTTCCGAAAGCATT
1 TCCGGGCTAAGTCCCGAGAGCATTCGTGCT-AGTGA--ATATCCGGGCTAAG-TCCGAAAGCATT
*
14126355 CGTGCTAGTGATGTA
62 CGTGCTAGTGATATA
*
14126370 TCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAGAGCATTCGT
1 TCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGA-ATATCCGGGCTAAGTCCGAAAGCATTCGT
14126435 GCTAGTGATATA
65 GCTAGTGATATA
*
14126447 TCC-GGCTAAGTCCCGAGAGCATTCGTGCTAGTG--TGTCCGGGCTAAGTCCGAAGAGCATTCGT
1 TCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGAATATCCGGGCTAAGTCCGAA-AGCATTCGT
14126509 GCTAGT-A-ATA
65 GCTAGTGATATA
14126519 TCCG
1 TCCG
14126523 TGCAAACCGA
Statistics
Matches: 141, Mismatches: 7, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
72 6 0.04
73 18 0.13
74 15 0.11
76 30 0.21
77 40 0.28
78 17 0.12
79 8 0.06
80 7 0.05
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (76 bp):
TCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGAATATCCGGGCTAAGTCCGAAAGCATTCGTG
CTAGTGATATA
Found at i:14130125 original size:47 final size:47
Alignment explanation
Indices: 14130072--14130421 Score: 547
Period size: 47 Copynumber: 7.4 Consensus size: 47
14130062 CAGCCAAGAC
14130072 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14130119 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
14130168 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
14130215 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTAAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
14130262 AGTGTATATATGTAATAAGGCCTAATGGCCGATATGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14130309 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
14130356 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
14130403 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
14130422 TCCCGAAGGG
Statistics
Matches: 280, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 233 0.83
49 47 0.17
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:14135600 original size:29 final size:30
Alignment explanation
Indices: 14135534--14135652 Score: 133
Period size: 29 Copynumber: 4.2 Consensus size: 30
14135524 TACATACATG
*
14135534 CATATGGCCCAT-TAGGCCCAA-TCTTATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
14135562 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* * *
14135591 CTTATGGCCCA-CTAGGCTCAATTCACATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
*
14135620 CATATGGCCCAT-TAGGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
14135649 -ATAT
1 CATAT
14135653 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
28 23 0.31
29 52 0.69
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:14138240 original size:19 final size:19
Alignment explanation
Indices: 14138204--14138241 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14138194 GTATCTTTAG
*
14138204 AGATGCTATGTCAGACACT
1 AGATGCTATGTCACACACT
14138223 AGATGCTTATGTC-CACACT
1 AGATGC-TATGTCACACACT
14138242 TTATTTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (19 bp):
AGATGCTATGTCACACACT
Done.