Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 43 of 343
Found at i:14152601 original size:20 final size:21
Alignment explanation
Indices: 14152573--14152611 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
14152563 CTTTCTTGAT
14152573 CTAAATTAAT-ACACATTTCA
1 CTAAATTAATCACACATTTCA
*
14152593 CTAATTTAATCACACATTT
1 CTAAATTAATCACACATTT
14152612 AATCAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (21 bp):
CTAAATTAATCACACATTTCA
Found at i:14161504 original size:22 final size:22
Alignment explanation
Indices: 14161460--14161504 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14161450 TTAATCATTA
* * *
14161460 TTATTTAGTATCAGTCCATCAT
1 TTATTCAGTAACAGTCCAACAT
*
14161482 TTATTCAGTAACAGTCTAACAT
1 TTATTCAGTAACAGTCCAACAT
14161504 T
1 T
14161505 CGGTAGCAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (22 bp):
TTATTCAGTAACAGTCCAACAT
Found at i:14161911 original size:17 final size:18
Alignment explanation
Indices: 14161881--14161920 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
14161871 TCAATAAACT
14161881 TTCAAATTTCAATTTC-A
1 TTCAAATTTCAATTTCAA
14161898 TTCATAATTT-AATTTCAA
1 TTCA-AATTTCAATTTCAA
14161916 TTCAA
1 TTCAA
14161921 TTTAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.47
Consensus pattern (18 bp):
TTCAAATTTCAATTTCAA
Found at i:14169152 original size:24 final size:24
Alignment explanation
Indices: 14169124--14169184 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 24
14169114 AACCGAATTT
* *
14169124 GCACACATAGTGCT-TATTACACTC
1 GCACACATAGTGCTATAGTAAAC-C
14169148 GCACACATAGTGCTATAGTAAACC
1 GCACACATAGTGCTATAGTAAACC
14169172 GCACACATAGTGC
1 GCACACATAGTGC
14169185 ATTGGATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 28 0.82
25 6 0.18
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (24 bp):
GCACACATAGTGCTATAGTAAACC
Found at i:14172746 original size:40 final size:40
Alignment explanation
Indices: 14172680--14172897 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
14172670 CGGATGATAA
* *
14172680 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
14172720 TCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
14172760 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
14172800 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
14172840 CTGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
14172880 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
14172898 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 17 0.10
40 144 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:14174716 original size:17 final size:18
Alignment explanation
Indices: 14174686--14174725 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
14174676 TCAATACACT
14174686 TTCAAATTTCAATTTC-A
1 TTCAAATTTCAATTTCAA
14174703 TTCATAATTT-AATTTCAA
1 TTCA-AATTTCAATTTCAA
14174721 TTCAA
1 TTCAA
14174726 TTTAATACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.47
Consensus pattern (18 bp):
TTCAAATTTCAATTTCAA
Found at i:14180324 original size:15 final size:15
Alignment explanation
Indices: 14180304--14180334 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14180294 GATTAAACAT
14180304 ACTGAATACCCATCC
1 ACTGAATACCCATCC
14180319 ACTGAATACCCATCC
1 ACTGAATACCCATCC
14180334 A
1 A
14180335 ATTTTAGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.39, G:0.06, T:0.19
Consensus pattern (15 bp):
ACTGAATACCCATCC
Found at i:14181084 original size:22 final size:22
Alignment explanation
Indices: 14181039--14181084 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14181029 TTAATCATTA
* *
14181039 TTATTCAGTATCAGTCAATCAT
1 TTATTCAGTAACAATCAATCAT
14181061 TTATTCAGTAACAATCCAAT-AT
1 TTATTCAGTAACAAT-CAATCAT
14181083 TT
1 TT
14181085 GGTAGCAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (22 bp):
TTATTCAGTAACAATCAATCAT
Found at i:14181332 original size:51 final size:52
Alignment explanation
Indices: 14181223--14181340 Score: 132
Period size: 51 Copynumber: 2.2 Consensus size: 52
14181213 CCGTAGCGGT
* *
14181223 AACAGTAACAGTAACAGTAGCGGTACACAGAGTACCTCATCGGAACAAATTCGA
1 AACAGTAACAGTAACAGTA-CGGTA-ACAGAGTACCTCATCAGAACAAATCCGA
* * * *
14181277 AACAGTAACAGTAACAGT-CAGGT-ACAGAGTACCTCTTTAGAACGAATCCGG
1 AACAGTAACAGTAACAGTAC-GGTAACAGAGTACCTCATCAGAACAAATCCGA
*
14181328 AACAGTCACAGTA
1 AACAGTAACAGTA
14181341 GTCGACAAGT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
51 34 0.61
52 1 0.02
53 3 0.05
54 18 0.32
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (52 bp):
AACAGTAACAGTAACAGTACGGTAACAGAGTACCTCATCAGAACAAATCCGA
Found at i:14182670 original size:5 final size:5
Alignment explanation
Indices: 14182662--14182702 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
14182652 AATTTATTTC
14182662 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A
14182703 GAAATAACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:14185296 original size:28 final size:28
Alignment explanation
Indices: 14185264--14185334 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
14185254 ATATATAAGT
*
14185264 TCGCACACTTAGTGCT-TAATAATCAAAC
1 TCGCACACTTAGTGCTAT-ACAATCAAAC
* * *
14185292 TCGCACACTTAATGCTATACAATTAACC
1 TCGCACACTTAGTGCTATACAATCAAAC
*
14185320 TCGTACACTTAGTGC
1 TCGCACACTTAGTGC
14185335 CAATCTCATA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
28 35 0.97
29 1 0.03
ACGTcount: A:0.32, C:0.27, G:0.11, T:0.30
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATACAATCAAAC
Found at i:14185931 original size:26 final size:26
Alignment explanation
Indices: 14185902--14186009 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
14185892 TGGTACAAAT
14185902 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14185928 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14185954 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14185980 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14186006 TGAT
1 TGAT
14186010 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14188730 original size:16 final size:16
Alignment explanation
Indices: 14188709--14188740 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14188699 AATGGGTTTA
*
14188709 CAAAAACAAAGATTTT
1 CAAAAACAAAAATTTT
14188725 CAAAAACAAAAATTTT
1 CAAAAACAAAAATTTT
14188741 ATAAAGAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.25
Consensus pattern (16 bp):
CAAAAACAAAAATTTT
Found at i:14192960 original size:26 final size:26
Alignment explanation
Indices: 14192931--14192986 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
14192921 TGGTACAAAT
14192931 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14192957 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14192983 TGAT
1 TGAT
14192987 GGACATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14200399 original size:8 final size:8
Alignment explanation
Indices: 14200386--14200414 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
14200376 TAAATATCTT
14200386 AAAAAATA
1 AAAAAATA
14200394 AAAAAATA
1 AAAAAATA
14200402 AAAAAATA
1 AAAAAATA
14200410 AAAAA
1 AAAAA
14200415 GAATGATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:14202346 original size:3 final size:3
Alignment explanation
Indices: 14202338--14202384 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
14202328 AATACCTTGC
14202338 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
14202385 ATTTTTGTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:14208378 original size:22 final size:21
Alignment explanation
Indices: 14208330--14208390 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 21
14208320 TAGCCAATTG
*
14208330 TATTTATTTATTAAAATGCATT
1 TATTTATTT-TTATAATGCATT
14208352 TATTTATTTTTATAAT-CTATT
1 TATTTATTTTTATAATGC-ATT
*
14208373 TAATTTTTTTTTATAATG
1 T-ATTTATTTTTATAATG
14208391 TTTCACTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 1 0.03
21 10 0.29
22 23 0.68
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (21 bp):
TATTTATTTTTATAATGCATT
Found at i:14208771 original size:30 final size:30
Alignment explanation
Indices: 14208699--14208783 Score: 91
Period size: 30 Copynumber: 2.8 Consensus size: 30
14208689 GAGATATATA
* *
14208699 ATATGGTAATTATATTAAATT-GAATATTAT
1 ATAT-GTAATTAAATTAAATTAAAATATTAT
* * *
14208729 ATCATGTGATTAAATAAAATTAAAATGTTAT
1 AT-ATGTAATTAAATTAAATTAAAATATTAT
*
14208760 ATATGTAATTAAATTAAGTTAAAA
1 ATATGTAATTAAATTAAATTAAAA
14208784 ATGGTCTAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
30 34 0.76
31 11 0.24
ACGTcount: A:0.48, C:0.01, G:0.09, T:0.41
Consensus pattern (30 bp):
ATATGTAATTAAATTAAATTAAAATATTAT
Found at i:14209409 original size:32 final size:32
Alignment explanation
Indices: 14209373--14209443 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
14209363 ATAAAATCTA
* *
14209373 AAAAAATATATAAAAATA-AAAAATAATTGTTG
1 AAAAAATATATAAAAACACAAAAAT-ATTGTTC
* *
14209405 AAAAAATATATAACAACACAAAAATATTTTTC
1 AAAAAATATATAAAAACACAAAAATATTGTTC
14209437 AAAAAAT
1 AAAAAAT
14209444 TAATAATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 28 0.82
33 6 0.18
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.27
Consensus pattern (32 bp):
AAAAAATATATAAAAACACAAAAATATTGTTC
Found at i:14210411 original size:3 final size:3
Alignment explanation
Indices: 14210403--14210450 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
14210393 TGTAATTTAC
14210403 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14210451 ATGTCAAGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14210970 original size:16 final size:16
Alignment explanation
Indices: 14210951--14211031 Score: 51
Period size: 16 Copynumber: 5.0 Consensus size: 16
14210941 GTTATAATGA
14210951 AATAGAGATGTAATAG
1 AATAGAGATGTAATAG
*
14210967 AATAG-GATTATAATAG
1 AATAGAGA-TGTAATAG
* *
14210983 AACAGA-ACTATAATCAG
1 AATAGAGA-TGTAAT-AG
**
14211000 TAATTCA-ATGTAATAG
1 -AATAGAGATGTAATAG
*
14211016 AATAGAGCTGTAATAG
1 AATAGAGATGTAATAG
14211032 CATTATTGTG
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
15 6 0.12
16 33 0.66
17 7 0.14
18 4 0.08
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.27
Consensus pattern (16 bp):
AATAGAGATGTAATAG
Found at i:14217313 original size:37 final size:37
Alignment explanation
Indices: 14217263--14217415 Score: 270
Period size: 37 Copynumber: 4.1 Consensus size: 37
14217253 TTATTACGAA
* *
14217263 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
14217300 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
14217337 GTCTTACCCGGACATAATCTCCACACGTAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
14217374 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
14217411 GTCTT
1 GTCTT
14217416 TAGAGCTCAG
Statistics
Matches: 110, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 110 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:14217612 original size:47 final size:47
Alignment explanation
Indices: 14217534--14217989 Score: 723
Period size: 47 Copynumber: 9.6 Consensus size: 47
14217524 CCCTTCGGGA
* * * * * *
14217534 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14217581 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14217628 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14217675 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14217722 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14217771 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14217818 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14217867 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14217914 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14217963 CTTACCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
14217990 TATTCAAATA
Statistics
Matches: 382, Mismatches: 21, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 247 0.65
49 135 0.35
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14217766 original size:96 final size:96
Alignment explanation
Indices: 14217534--14217989 Score: 776
Period size: 96 Copynumber: 4.8 Consensus size: 96
14217524 CCCTTCGGGA
* * * * *
14217534 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
14217597 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
14217628 CTTATCAC--ATATATACACTTTCACATTCATCACATCGTCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
14217691 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
14217722 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
14217787 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
14217818 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
14217883 ACTTTCACATTCATCACATCAGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
14217914 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTACCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
14217979 ACTTTCACATT
66 ACTTTCACATT
14217990 TATTCAAATA
Statistics
Matches: 341, Mismatches: 17, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
93 1 0.00
94 91 0.27
96 249 0.73
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14217790 original size:143 final size:141
Alignment explanation
Indices: 14217534--14217989 Score: 723
Period size: 143 Copynumber: 3.2 Consensus size: 141
14217524 CCCTTCGGGA
* * * * * * * *
14217534 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
14217599 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
14217664 GTCCATTAGGC
131 GGCCATTAGGC
14217675 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
14217740 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
14217805 TCGGCCATTAGGC
129 TCGGCCATTAGGC
14217818 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
14217883 ACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* *
14217948 CATTGGCCATTCGGC
127 CATCGGCCATTAGGC
*
14217963 CTTACCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
14217990 TATTCAAATA
Statistics
Matches: 292, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
141 47 0.16
143 154 0.53
145 91 0.31
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:14221929 original size:37 final size:40
Alignment explanation
Indices: 14221734--14222438 Score: 837
Period size: 37 Copynumber: 18.6 Consensus size: 40
14221724 CCAGCATGAT
** * * * *
14221734 TGCTCTTC-GGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
** * * *
14221773 TGCTCTTCGATAACTTA-CACGGATATATCACTAGCACGAA
1 TGCTCTTCG-GGATTTAGCCCGGATACATCACTAGCACGAA
* *
14221813 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
*
14221853 TGCTCTTCGGGACTTAGTCCCGG-TACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAG-CCCGGATACATCACTAGCACGAA
* *
14221893 TGCTCTTC-GGA-TTAGTCC-GATAAATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
14221930 TGCTC--C-GGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
* *
14221967 TGCTCTTC-GGACTTAG-TCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
14222005 TGCTCTTCGGGA-TTAGCCCGGATACATCA-TAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
*
14222043 TGCTCTTC-GGA-TTAGTCCGGATAC-TCACTAGCA-GAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
14222079 TGCTCTTC--GATTTAGCCCGGAT-CATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
* * *
14222116 TGCTCTTCGGGACTTAGTCCAGATACATCAC-AGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
* *
14222155 TGCTCTTCGGGATTTAGCCCGGATATATCACCAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
* *
14222195 -GCTCTTCGGGACTTAG-CCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
14222233 TGCTCTTC-GGA-TTAGCCCGGAT--ATCAC-AGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
*
14222268 TGCTC-TCGGGATTTAGCCC-GATACATCACTAGTACG-A
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
14222305 TGCTCTTCGGGATTTAGCCC-GATAC-TCAC-AGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
*
14222342 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG-A
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
14222381 TGCTCTTC-GGATTTAG-CCGGAT--A-CA-TAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
*
14222415 TGCTCTTCAGGA-TTAGCCCGGATA
1 TGCTCTTCGGGATTTAGCCCGGATA
14222439 TTCATTCTCA
Statistics
Matches: 594, Mismatches: 37, Indels: 73
0.84 0.05 0.10
Matches are distributed among these distances:
33 7 0.01
34 17 0.03
35 36 0.06
36 57 0.10
37 123 0.21
38 117 0.20
39 119 0.20
40 110 0.19
41 8 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
Found at i:14222061 original size:150 final size:156
Alignment explanation
Indices: 14221797--14222438 Score: 867
Period size: 150 Copynumber: 4.3 Consensus size: 156
14221787 TTACACGGAT
14221797 ATATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
1 ATATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
* *
14221862 GGACTTAGTCCCGG-TACATCACTAGCACGAATGCTCTTC-GGA-TTAGTCC-GATAAATCACTA
66 GGATTTAG-CCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGTCCGGATAAATCACTA
14221923 GCACGAATGCTC-CGGATTTAGCCCGG
130 GCACGAATGCTCTCGGATTTAGCCCGG
14221949 ATACATCACTAGCACGAATGCTCTTC-GGACTTAGT-CGGATACATCACTAGCACGAATGCTCTT
1 AT--ATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTT
* *
14222012 CGGGA-TTAGCCCGGATACATCA-TAGCACGAATGCTCTTC-GGA-TTAGTCCGGAT-ACTCACT
64 CGGGATTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGTCCGGATAAATCACT
14222072 AGCA-GAATGCTCTTC-GATTTAGCCCGG
129 AGCACGAATGCTC-TCGGATTTAGCCCGG
*
14222099 ATCATCACTAGCACGAATGCTCTTCGGGACTTAGTCCAGATACATCAC-AGCACGAATGCTCTTC
1 AT-ATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTC
* * *
14222163 GGGATTTAGCCCGGATATATCACCAGCACGAA-GCTCTTCGGGACTTAG-CCAGATACATCACTA
65 GGGATTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGTCCGGATAAATCACTA
14222226 GCACGAATGCTCTTCGGA-TTAGCCCGG
130 GCACGAATGCTC-TCGGATTTAGCCCGG
* * *
14222253 ATATCAC-AGCACGAATGCTC-TCGGGATTTAG-CCCGATACATCACTAGTACG-ATGCTCTTCG
1 ATATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
* * *
14222314 GGATTTAGCCC-GATAC-TCA-CAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCACTAG
66 GGATTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGTCCGGATAAATCACTAG
14222376 CACG-ATGCTCTTCGGATTTAG-CCGG
131 CACGAATGCTC-TCGGATTTAGCCCGG
* *
14222401 ATA-CA-TAGCACGAATGCTCTTCAGGA-TTAGCCCGGATA
1 ATATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATA
14222439 TTCATTCTCA
Statistics
Matches: 452, Mismatches: 16, Indels: 48
0.88 0.03 0.09
Matches are distributed among these distances:
147 28 0.06
148 48 0.11
149 57 0.13
150 118 0.26
151 64 0.14
152 64 0.14
153 27 0.06
154 44 0.10
155 2 0.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (156 bp):
ATATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
GGATTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGTCCGGATAAATCACTAG
CACGAATGCTCTCGGATTTAGCCCGG
Found at i:14222266 original size:263 final size:265
Alignment explanation
Indices: 14221747--14222439 Score: 870
Period size: 263 Copynumber: 2.6 Consensus size: 265
14221737 TCTTCGGACC
* * * * * *
14221747 TAGCCCAGATATAACACCAGCACGAATGCTCTTC-GATAACTTACACGGATATATCACTAGCACG
1 TAGCCC-GATACATCACTAGCACGAATGCTCTTCGGATTA-GT-C-CGGATA-CTCACTAGCACG
* * * *
14221811 AATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGTCCCGG
61 AATGCTCTTC-GGATTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGTCCAGA
* * * *
14221876 TACATCACTAGCACGAATGCTCTTCGGATTAGTCC-GATAAATCACTAGCACGAATGCTCCGGAT
125 TACATCAC-AGCACGAATGCTCTTCGGATTAGCCCGGATATATCACCAGCACGAATGCTCCGGAC
* *
14221940 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGTCGGATACATCACTAGCACGAA
189 TTAGCCCAGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCGGATA-ATCACTAGCACGAA
14222005 TGCTCTTCGGGA-T
253 TGCTC-TCGGGATT
14222018 TAGCCCGGATACATCA-TAGCACGAATGCTCTTCGGATTAGTCCGGATACTCACTAGCA-GAATG
1 TAGCCC-GATACATCACTAGCACGAATGCTCTTCGGATTAGTCCGGATACTCACTAGCACGAATG
14222081 CTCTTC-GATTTAGCCCGGAT-CATCACTAGCACGAATGCTCTTCGGGACTTAGTCCAGATACAT
65 CTCTTCGGATTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGTCCAGATACAT
14222144 CACAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCACCAGCACGAA-GCTCTTCGGGACT
130 CACAGCACGAATGCTCTTC-GGA-TTAGCCCGGATATATCACCAGCACGAATGCTC--C-GGACT
14222208 TAG-CCAGATACATCACTAGCACGAATGCTCTTCGGA-TTAGCCCGGAT-ATCAC-AGCACGAAT
190 TAGCCCAGATACATCACTAGCACGAATGCTCTTCGGACTTAG-CCGGATAATCACTAGCACGAAT
14222269 GCTCTCGGGATT
254 GCTCTCGGGATT
* *
14222281 TAGCCCGATACATCACTAGTACG-ATGCTCTTCGGGATTTAG-CCCGATACTCAC-AGCACGAAT
1 TAGCCCGATACATCACTAGCACGAATGCTCTTC-GGA-TTAGTCCGGATACTCACTAGCACGAAT
* * *
14222343 GCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG-ATGCTCTTC-GGATTTAG-CCGGATAC
64 GCTCTTC-GGATTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGTCCAGATAC
14222405 AT---AGCACGAATGCTCTTCAGGATTAGCCCGGATAT
128 ATCACAGCACGAATGCTCTTC-GGATTAGCCCGGATAT
14222440 TCATTCTCAT
Statistics
Matches: 383, Mismatches: 23, Indels: 44
0.85 0.05 0.10
Matches are distributed among these distances:
259 13 0.03
260 19 0.05
262 44 0.11
263 107 0.28
264 38 0.10
265 44 0.11
266 61 0.16
267 16 0.04
268 6 0.02
269 1 0.00
270 17 0.04
271 17 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (265 bp):
TAGCCCGATACATCACTAGCACGAATGCTCTTCGGATTAGTCCGGATACTCACTAGCACGAATGC
TCTTCGGATTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGTCCAGATACATC
ACAGCACGAATGCTCTTCGGATTAGCCCGGATATATCACCAGCACGAATGCTCCGGACTTAGCCC
AGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCGGATAATCACTAGCACGAATGCTCTCG
GGATT
Found at i:14223648 original size:37 final size:37
Alignment explanation
Indices: 14223598--14223736 Score: 219
Period size: 38 Copynumber: 3.8 Consensus size: 37
14223588 TTATTACGAA
* *
14223598 GTCTTACCTGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTTATCGG
* *
14223635 GTCTTACCCGGACAAAATCTCCAACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCC-ACACGTAGTTATCGG
14223673 GTCTTACCCGGACATAATCTCCACACGTAGTTATC-G
1 GTCTTACCCGGACATAATCTCCACACGTAGTTATCGG
14223709 GTCTTA-CCGGACATAATCTCCACACGTA
1 GTCTTACCCGGACATAATCTCCACACGTA
14223737 TCATCGGTCT
Statistics
Matches: 95, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
35 22 0.23
36 7 0.07
37 32 0.34
38 34 0.36
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTTATCGG
Found at i:14223923 original size:47 final size:48
Alignment explanation
Indices: 14223861--14224310 Score: 473
Period size: 47 Copynumber: 9.6 Consensus size: 48
14223851 CCCTTCGGGA
* * * *
14223861 CTTATCACATTTATACACTTTCACATCCAT-ACACGTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACACGTGGCCATTAGGC
* *
14223908 CCTGTCACATATATACAC-TTCAC-TTCATCACA--TCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACACGT-GGCCATTAGGC
14223953 CTTATCACATATATACACTTTCACATTCATCACATCGT--CCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACA-CGTGGCCATTAGGC
14224000 CTTATCACATATATACACTTTCACATTCATCACAC--GGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACACGTGGCCATTAGGC
* *
14224046 CTTATCACATATATATACACTTTCACATTCATCACA-TTGG-C-TTCGG-
1 CTTATCAC--ATATATACACTTTCACATTCATCACACGTGGCCATTAGGC
14224092 CTTA-CACATATAT--ACTTTCACATTCAT-ACA--TCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACACGT-GGCCATTAGGC
14224135 CTTATCACACTATATATACACTTTCACATTCATCACA--TCGGCCATTAGG-
1 CTTAT--CAC-ATATATACACTTTCACATTCATCACACGT-GGCCATTAGGC
*
14224184 CTTATCACATATATACCACTTTCACATTCATCACA--TCAGCCATTAGGC
1 CTTATCACATATATA-CACTTTCACATTCATCACACGT-GGCCATTAGGC
* *
14224232 CTTATCACATATATATACACTTTCACATTCATCACA-TTGGCCATTTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACACGTGGCCA-TTAGGC
*
14224282 CTTAACCAGCATATATACACTTTCACATT
1 CTT-ATCA-CATATATACACTTTCACATT
14224311 TATTCAAATA
Statistics
Matches: 357, Mismatches: 14, Indels: 61
0.83 0.03 0.14
Matches are distributed among these distances:
39 1 0.00
40 5 0.01
41 15 0.04
42 4 0.01
43 10 0.03
44 1 0.00
45 32 0.09
46 45 0.13
47 110 0.31
48 35 0.10
49 44 0.12
50 51 0.14
51 3 0.01
52 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (48 bp):
CTTATCACATATATACACTTTCACATTCATCACACGTGGCCATTAGGC
Found at i:14224188 original size:49 final size:49
Alignment explanation
Indices: 14224099--14224310 Score: 306
Period size: 49 Copynumber: 4.3 Consensus size: 49
14224089 CGGCTTACAC
*
14224099 ATATATACTTTCACATTCAT-ACATCGGCCATTAGGCCTTATCACACTAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-TAT
14224148 ATATACACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* *
14224196 ATA-CCACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* * * *
14224244 ATATACACTTTCACATTCATCACATTGGCCATTTCGGCCTTAAC-CAGCAT
1 ATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACA-TAT
14224294 ATATACACTTTCACATT
1 ATATACACTTTCACATT
14224311 TATTCAAATA
Statistics
Matches: 149, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
47 30 0.20
48 21 0.14
49 54 0.36
50 44 0.30
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:14225257 original size:22 final size:23
Alignment explanation
Indices: 14225214--14225259 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
14225204 GGAATTCGCA
14225214 CACACACAGTGCCTCTAATCATT
1 CACACACAGTGCCTCTAATCATT
* *
14225237 CACACATAGTG-CTCTATTCATT
1 CACACACAGTGCCTCTAATCATT
14225259 C
1 C
14225260 GTTATTACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.28, C:0.33, G:0.09, T:0.30
Consensus pattern (23 bp):
CACACACAGTGCCTCTAATCATT
Found at i:14225468 original size:40 final size:40
Alignment explanation
Indices: 14225440--14226066 Score: 1042
Period size: 40 Copynumber: 15.7 Consensus size: 40
14225430 CATGATTGCC
** * * *
14225440 CTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
* *
14225480 CTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
14225520 CTTCGGGACTTTAG-CCGGATA-ATCACTAGCACGAATGCT
1 CTTCGGGA-TTTAGCCCGGATACATCACTAGCACGAATGCT
* *
14225559 CTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
14225599 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
* *
14225639 CTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
14225679 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
14225719 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
* *
14225759 CTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
14225799 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
* * *
14225839 CTTCGGGACTTAGTCCGGATACATCATTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
* *
14225879 CTTCGGGATTTAGCCCGGATATATCACCAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
14225919 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
14225959 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
*
14225999 CTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCT
1 CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
* *
14226039 CTTCAGGATTTAGCCCGGATATATCACT
1 CTTCGGGATTTAGCCCGGATACATCACT
14226067 CTCAATTCTC
Statistics
Matches: 555, Mismatches: 29, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
38 4 0.01
39 33 0.06
40 514 0.93
41 4 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCT
Found at i:14227317 original size:37 final size:37
Alignment explanation
Indices: 14227261--14227413 Score: 261
Period size: 37 Copynumber: 4.1 Consensus size: 37
14227251 TTATTACGAA
* * *
14227261 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
14227298 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
14227335 GTCTTACCCGGACATAATCTCCACACGTAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
14227372 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
14227409 GTCTT
1 GTCTT
14227414 TAGAGCTCGG
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 109 1.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:14227610 original size:47 final size:47
Alignment explanation
Indices: 14227532--14227987 Score: 750
Period size: 47 Copynumber: 9.6 Consensus size: 47
14227522 CCCTTCGGGA
* * * * * *
14227532 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14227579 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14227626 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14227673 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14227720 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14227769 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14227816 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14227865 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14227912 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14227961 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
14227988 TATTCAAATA
Statistics
Matches: 387, Mismatches: 16, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 250 0.65
49 137 0.35
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14227762 original size:96 final size:96
Alignment explanation
Indices: 14227532--14227987 Score: 803
Period size: 96 Copynumber: 4.8 Consensus size: 96
14227522 CCCTTCGGGA
* * * * *
14227532 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
14227595 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
14227626 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
14227689 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
14227720 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
14227785 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
14227816 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
14227881 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
14227912 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
14227977 ACTTTCACATT
66 ACTTTCACATT
14227988 TATTCAAATA
Statistics
Matches: 345, Mismatches: 13, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
93 1 0.00
94 92 0.27
96 252 0.73
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14239458 original size:31 final size:31
Alignment explanation
Indices: 14239423--14239483 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
14239413 TACGTATGTG
14239423 ATACGTGCCAAAGAAGACACAGAGGCTCCAA
1 ATACGTGCCAAAGAAGACACAGAGGCTCCAA
** *
14239454 ATACGTGCCATGGAAGACGCAGAGGCTCCA
1 ATACGTGCCAAAGAAGACACAGAGGCTCCA
14239484 GATGTTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.36, C:0.26, G:0.26, T:0.11
Consensus pattern (31 bp):
ATACGTGCCAAAGAAGACACAGAGGCTCCAA
Found at i:14241823 original size:47 final size:47
Alignment explanation
Indices: 14241769--14242006 Score: 334
Period size: 47 Copynumber: 5.1 Consensus size: 47
14241759 TTAGGATTTT
** * *
14241769 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
14241816 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
14241863 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
14241910 ATGTGATGAACGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
14241957 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
14242004 ATG
1 ATG
14242007 CGAAACGTGT
Statistics
Matches: 176, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 173 0.98
48 3 0.02
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:14241846 original size:25 final size:25
Alignment explanation
Indices: 14241817--14241894 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
14241807 GAATGGCCAA
14241817 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
14241842 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
14241864 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
14241889 TGTGAT
1 TGTGAT
14241895 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 8 0.20
25 15 0.38
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:14241869 original size:22 final size:22
Alignment explanation
Indices: 14241842--14241916 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
14241832 CATGCATATG
14241842 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
14241864 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
14241887 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
14241911 TGTGAT
1 TGTGAT
14241917 GAACGTGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:14242033 original size:46 final size:46
Alignment explanation
Indices: 14241980--14242070 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
14241970 GGAAGTGTAT
* *
14241980 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
14242026 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
14242071 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:14242533 original size:72 final size:72
Alignment explanation
Indices: 14242416--14242562 Score: 294
Period size: 72 Copynumber: 2.0 Consensus size: 72
14242406 AGTTTATATG
14242416 TGAGCTTGATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGTGAGCAATCTATGAGACT
1 TGAGCTTGATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGTGAGCAATCTATGAGACT
14242481 ATTCCTA
66 ATTCCTA
14242488 TGAGCTTGATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGTGAGCAATCTATGAGACT
1 TGAGCTTGATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGTGAGCAATCTATGAGACT
14242553 ATTCCTA
66 ATTCCTA
14242560 TGA
1 TGA
14242563 TTATGTGACA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 75 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (72 bp):
TGAGCTTGATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGTGAGCAATCTATGAGACT
ATTCCTA
Found at i:14246868 original size:36 final size:36
Alignment explanation
Indices: 14246826--14246897 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
14246816 TCATCAAAGA
*
14246826 TCATTTGGACTTCATCTAGGAAGTCTTAAGATGTAT
1 TCATTTGCACTTCATCTAGGAAGTCTTAAGATGTAT
14246862 TCATTTGCACTTCATCTAGGAAGTCTTAAGATGTAT
1 TCATTTGCACTTCATCTAGGAAGTCTTAAGATGTAT
14246898 CGAGATCTCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (36 bp):
TCATTTGCACTTCATCTAGGAAGTCTTAAGATGTAT
Found at i:14249497 original size:14 final size:14
Alignment explanation
Indices: 14249474--14249513 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
14249464 CGGGATAATC
14249474 TGCATGTATGAATT
1 TGCATGTATGAATT
*
14249488 TGCATCTATGAATT
1 TGCATGTATGAATT
*
14249502 CGCATGTATGAA
1 TGCATGTATGAA
14249514 ATCCACATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (14 bp):
TGCATGTATGAATT
Found at i:14249530 original size:14 final size:14
Alignment explanation
Indices: 14249494--14249586 Score: 87
Period size: 14 Copynumber: 6.6 Consensus size: 14
14249484 AATTTGCATC
* *
14249494 TATGAATTCGCATG
1 TATGAATCCACATG
*
14249508 TATGAAATCCACATA
1 TATG-AATCCACATG
** *
14249523 TATGAATCCGTATC
1 TATGAATCCACATG
*
14249537 TATGAATCCACACG
1 TATGAATCCACATG
*
14249551 TATGAATACACATG
1 TATGAATCCACATG
* *
14249565 TATGAATTCACATT
1 TATGAATCCACATG
14249579 TATGAATC
1 TATGAATC
14249587 TACAAAAGTT
Statistics
Matches: 63, Mismatches: 15, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
14 52 0.83
15 11 0.17
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (14 bp):
TATGAATCCACATG
Found at i:14249568 original size:28 final size:28
Alignment explanation
Indices: 14249475--14249585 Score: 96
Period size: 28 Copynumber: 3.9 Consensus size: 28
14249465 GGGATAATCT
*** * *
14249475 GCATGTATGAATTTGCATCTATGAATTC
1 GCATGTATGAATCCACATATATGAATAC
*
14249503 GCATGTATGAAATCCACATATATGAATCC
1 GCATGTATG-AATCCACATATATGAATAC
* * **
14249532 GTATCTATGAATCCACACGTATGAATAC
1 GCATGTATGAATCCACATATATGAATAC
* * *
14249560 ACATGTATGAATTCACATTTATGAAT
1 GCATGTATGAATCCACATATATGAAT
14249586 CTACAAAAGT
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
28 45 0.68
29 21 0.32
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (28 bp):
GCATGTATGAATCCACATATATGAATAC
Found at i:14250936 original size:35 final size:35
Alignment explanation
Indices: 14250897--14250966 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
14250887 CTATTGGCCA
* *
14250897 TCTAAAGAGTGCACCTACTATAGGATCCAATCACT
1 TCTAAAAAGTGCACCCACTATAGGATCCAATCACT
14250932 TCTAAAAAGTGCACCCACTATAGGATCCAATCACT
1 TCTAAAAAGTGCACCCACTATAGGATCCAATCACT
14250967 AAGTTATGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (35 bp):
TCTAAAAAGTGCACCCACTATAGGATCCAATCACT
Found at i:14256134 original size:85 final size:86
Alignment explanation
Indices: 14255990--14256152 Score: 231
Period size: 85 Copynumber: 1.9 Consensus size: 86
14255980 CAAACAAGTG
* * * *
14255990 GTGGCTCGTCCACAAAACCTAGTGACAATTTGTTTAATCTGTAAATATGTTGTGCACTCACAACA
1 GTGGCTCGTCCACAAAACCCAGTGACAATTTGTTTAATCTGCAAACATGTTATGCACTCACAACA
*
14256055 AGTGGCAGTAACTATAAATAT
66 AGTGACAGTAACTATAAATAT
* * *
14256076 GTGGCTTGTCCAC-AAACCCAGTTG-CAATTTGTTTAATTTGCAACCATGTTATGCACTCACAAC
1 GTGGCTCGTCCACAAAACCCAG-TGACAATTTGTTTAATCTGCAAACATGTTATGCACTCACAAC
14256139 AAGTGACAGTAACT
65 AAGTGACAGTAACT
14256153 GCAAATGTTT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
85 54 0.79
86 14 0.21
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (86 bp):
GTGGCTCGTCCACAAAACCCAGTGACAATTTGTTTAATCTGCAAACATGTTATGCACTCACAACA
AGTGACAGTAACTATAAATAT
Found at i:14259630 original size:26 final size:27
Alignment explanation
Indices: 14259601--14259652 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
14259591 GTAATAGGTT
*
14259601 TTTAAAC-CAATAAAAATACTTTAAAA
1 TTTAAACACAATAAAAATAATTTAAAA
*
14259627 TTTAAACATAATAAAAATAATTTAAA
1 TTTAAACACAATAAAAATAATTTAAA
14259653 TAATGAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.33
Consensus pattern (27 bp):
TTTAAACACAATAAAAATAATTTAAAA
Found at i:14261919 original size:28 final size:28
Alignment explanation
Indices: 14261888--14261961 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 28
14261878 CAAATACATT
14261888 TAAAACAA-ATATTAAAACAAGAAACAAA
1 TAAAA-AATATATTAAAACAAGAAACAAA
*
14261916 TAAAAAATATATTAAAACAAGACACAAA
1 TAAAAAATATATTAAAACAAGAAACAAA
* *
14261944 TTGAAAAATATAATAAAA
1 -TAAAAAATATATTAAAA
14261962 ATTGATTATA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 2 0.05
28 24 0.59
29 15 0.37
ACGTcount: A:0.69, C:0.08, G:0.04, T:0.19
Consensus pattern (28 bp):
TAAAAAATATATTAAAACAAGAAACAAA
Found at i:14262005 original size:23 final size:23
Alignment explanation
Indices: 14261977--14262021 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14261967 TTATATTAAA
* *
14261977 ATTAAAATTAAAATATAAATATG
1 ATTAAAAATAAAAAATAAATATG
*
14262000 ATTAAAAATAAAAAATATATAT
1 ATTAAAAATAAAAAATAAATAT
14262022 ATTTATTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
ATTAAAAATAAAAAATAAATATG
Found at i:14263334 original size:86 final size:86
Alignment explanation
Indices: 14263231--14263423 Score: 361
Period size: 86 Copynumber: 2.3 Consensus size: 86
14263221 CAGTTGTTCG
*
14263231 GAACATTGCTATTCTTGAAACACTGTTATTCAAAACAAGAGTTGTTTTGTATTTTGGTTGTTCTA
1 GAACATAGCTATTCTTGAAACACTGTTATTCAAAACAAGAGTTGTTTTGTATTTTGGTTGTTCTA
14263296 AAATGACCGCTAACTCTATTT
66 AAATGACCGCTAACTCTATTT
14263317 GAACATAGCTATTCTTGAAACACTGTTATTCAAAACAAGAGTTGTTTTGTATTTTGGTTGTTCTA
1 GAACATAGCTATTCTTGAAACACTGTTATTCAAAACAAGAGTTGTTTTGTATTTTGGTTGTTCTA
14263382 AAATGACCGCTAACTCTATTT
66 AAATGACCGCTAACTCTATTT
*
14263403 GAACTTAGCTATTCTT-AAACA
1 GAACATAGCTATTCTTGAAACA
14263424 ACAATTGTTC
Statistics
Matches: 105, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
85 5 0.05
86 100 0.95
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (86 bp):
GAACATAGCTATTCTTGAAACACTGTTATTCAAAACAAGAGTTGTTTTGTATTTTGGTTGTTCTA
AAATGACCGCTAACTCTATTT
Found at i:14263442 original size:16 final size:16
Alignment explanation
Indices: 14263411--14263456 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
14263401 TTGAACTTAG
14263411 CTATTCTTAAACAACAA
1 CTATTC-TAAACAACAA
* * *
14263428 TTGTTCTAAATAACAA
1 CTATTCTAAACAACAA
14263444 CTATTCTAAACAA
1 CTATTCTAAACAA
14263457 AGTTGTTTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.33
Consensus pattern (16 bp):
CTATTCTAAACAACAA
Found at i:14270479 original size:24 final size:24
Alignment explanation
Indices: 14270451--14270502 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
14270441 TTAGTAGGTC
* *
14270451 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
*
14270475 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
14270499 AAAT
1 AAAT
14270503 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:14271005 original size:35 final size:34
Alignment explanation
Indices: 14270946--14271018 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 34
14270936 CAACATAGAT
* * *
14270946 TTTCTTTAAAAATTCAGAACAACTTGTTATAGCA
1 TTTCCTTAAAAATGCAAAACAACTTGTTATAGCA
*
14270980 TTTCCTTAAAAATGCGAAAACAACTTGTTATAGTA
1 TTTCCTTAAAAATGC-AAAACAACTTGTTATAGCA
14271015 TTTC
1 TTTC
14271019 TAGAACAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
34 13 0.38
35 21 0.62
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (34 bp):
TTTCCTTAAAAATGCAAAACAACTTGTTATAGCA
Found at i:14272210 original size:5 final size:5
Alignment explanation
Indices: 14272187--14272268 Score: 57
Period size: 5 Copynumber: 16.6 Consensus size: 5
14272177 ATGGTGAAAC
* *
14272187 ATAAT ATAAT -TTAT A-AAT ATAAT ATAAT ATAA- ATCGTAT AGTAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT--AAT A-TAAT
* *
14272232 A-AAA ATACAT ATAAT AAAAT AT-AT ATAAT ATAAT ATA
1 ATAAT ATA-AT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
14272269 TGAGGAAAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 18
0.70 0.09 0.21
Matches are distributed among these distances:
4 15 0.25
5 35 0.58
6 8 0.13
7 1 0.02
8 1 0.02
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (5 bp):
ATAAT
Found at i:14272219 original size:16 final size:16
Alignment explanation
Indices: 14272187--14272268 Score: 68
Period size: 16 Copynumber: 5.2 Consensus size: 16
14272177 ATGGTGAAAC
14272187 ATAATATAATTTATAAAT
1 ATAATATAA--TATAAAT
14272205 ATAATATAATATAAAT
1 ATAATATAATATAAAT
*
14272221 CGT-ATAGTAATA-AAA-
1 -ATAATA-TAATATAAAT
14272236 ATACATATAATA-AAAT
1 ATA-ATATAATATAAAT
14272252 AT-ATATAATAT-AAT
1 ATAATATAATATAAAT
14272266 ATA
1 ATA
14272269 TGAGGAAAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
14 14 0.25
15 8 0.15
16 18 0.33
17 6 0.11
18 9 0.16
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (16 bp):
ATAATATAATATAAAT
Found at i:14272252 original size:14 final size:14
Alignment explanation
Indices: 14272228--14272266 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
14272218 AATCGTATAG
14272228 TAATAAAAATACATA
1 TAAT-AAAATACATA
*
14272243 TAATAAAATATATA
1 TAATAAAATACATA
*
14272257 TAATATAATA
1 TAATAAAATA
14272267 TATGAGGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 18 0.82
15 4 0.18
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
TAATAAAATACATA
Found at i:14272439 original size:26 final size:26
Alignment explanation
Indices: 14272416--14272474 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
14272406 TAATATATAC
14272416 TAAAAATATATATAATAAAAATATGA
1 TAAAAATATATATAATAAAAATATGA
* *
14272442 -ATAATATATATATAATAAATATATGA
1 TA-AAAATATATATAATAAAAATATGA
14272468 TAAAAAT
1 TAAAAAT
14272475 TTAAAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 1 0.04
26 26 0.93
27 1 0.04
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (26 bp):
TAAAAATATATATAATAAAAATATGA
Found at i:14272445 original size:37 final size:37
Alignment explanation
Indices: 14272404--14272474 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
14272394 CATATAAAAA
14272404 AATAATATATACTA-AA-AATATATATAATAAAAATATG
1 AATAATATATA-TATAATAA-ATATATAATAAAAATATG
*
14272441 AATAATATATATATAATAAATATATGATAAAAAT
1 AATAATATATATATAATAAATATATAATAAAAAT
14272475 TTAAAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 2 0.06
37 27 0.87
38 2 0.06
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (37 bp):
AATAATATATATATAATAAATATATAATAAAAATATG
Found at i:14272447 original size:15 final size:15
Alignment explanation
Indices: 14272395--14272439 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
14272385 AATTTACAAC
14272395 ATATAA-AAAAATAAT
1 ATATAATAAAAAT-AT
*
14272410 ATATACTAAAAATAT
1 ATATAATAAAAATAT
14272425 ATATAATAAAAATAT
1 ATATAATAAAAATAT
14272440 GAATAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 21 0.78
16 6 0.22
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (15 bp):
ATATAATAAAAATAT
Found at i:14272454 original size:15 final size:13
Alignment explanation
Indices: 14272407--14272474 Score: 72
Period size: 13 Copynumber: 5.2 Consensus size: 13
14272397 ATAAAAAAAT
14272407 AATATATACTAA-A
1 AATATATA-TAATA
14272420 AATATATATAATA
1 AATATATATAATA
14272433 AA-A-ATATGAATA
1 AATATATAT-AATA
14272445 ATATATATATAATA
1 A-ATATATATAATA
14272459 AATATATGATAA-A
1 AATATAT-ATAATA
14272472 AAT
1 AAT
14272475 TTAAAAATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
11 4 0.08
12 9 0.18
13 22 0.45
14 10 0.20
15 4 0.08
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (13 bp):
AATATATATAATA
Found at i:14273982 original size:21 final size:21
Alignment explanation
Indices: 14273958--14273998 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14273948 ATAGCTACCA
14273958 TATCTCTGTCAAAAAGTATAT
1 TATCTCTGTCAAAAAGTATAT
* *
14273979 TATCTCTTTCTAAAAGTATA
1 TATCTCTGTCAAAAAGTATA
14273999 AAGAAATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (21 bp):
TATCTCTGTCAAAAAGTATAT
Found at i:14275980 original size:18 final size:18
Alignment explanation
Indices: 14275938--14275981 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
14275928 CACTGTTTGG
* *
14275938 CAAATTAATACAGTTCGC
1 CAAATTAATACAGATCAC
*
14275956 CATATTAATACAGATCAC
1 CAAATTAATACAGATCAC
14275974 CAAATTAA
1 CAAATTAA
14275982 CATACTTTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (18 bp):
CAAATTAATACAGATCAC
Found at i:14276219 original size:15 final size:16
Alignment explanation
Indices: 14276187--14276219 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14276177 CATTATCAAC
14276187 AAAATTCATATGTTATA
1 AAAATTCATA-GTTATA
14276204 AAAATTCATA-TTATA
1 AAAATTCATAGTTATA
14276219 A
1 A
14276220 TATTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
17 10 0.62
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (16 bp):
AAAATTCATAGTTATA
Found at i:14276950 original size:18 final size:18
Alignment explanation
Indices: 14276924--14276960 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
14276914 CTCAAATCTC
14276924 ACTTATAAGCTTAGATTT
1 ACTTATAAGCTTAGATTT
*
14276942 ACTTCTAAGCTTAGATTT
1 ACTTATAAGCTTAGATTT
14276960 A
1 A
14276961 AACTTCATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (18 bp):
ACTTATAAGCTTAGATTT
Found at i:14277821 original size:32 final size:31
Alignment explanation
Indices: 14277756--14277822 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 31
14277746 ACCTAAAATT
* * *
14277756 ATTAATTCTAATTATTATAATATTTTATTTA
1 ATTAATTCTAATTATTATAATATATAATCTA
14277787 ATTAATTCTTAATTATT-TAATTATATAATCTA
1 ATTAATTC-TAATTATTATAA-TATATAATCTA
14277819 ATTA
1 ATTA
14277823 TGGTTTTCGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 11 0.35
32 20 0.65
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.55
Consensus pattern (31 bp):
ATTAATTCTAATTATTATAATATATAATCTA
Found at i:14278083 original size:31 final size:31
Alignment explanation
Indices: 14278048--14278113 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
14278038 TTCAAAATAT
*
14278048 TCACTATACTATT-CAAAAGTTTATATTTACA
1 TCACTAAACTATTAC-AAAGTTTATATTTACA
* *
14278079 TCACTAAACTATTACAAAGTTTTTATTTAGA
1 TCACTAAACTATTACAAAGTTTATATTTACA
14278110 TCAC
1 TCAC
14278114 CGTGTTGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.41
Consensus pattern (31 bp):
TCACTAAACTATTACAAAGTTTATATTTACA
Found at i:14283032 original size:145 final size:145
Alignment explanation
Indices: 14282769--14283033 Score: 433
Period size: 145 Copynumber: 1.8 Consensus size: 145
14282759 CTTACTCCGT
*
14282769 ATTCTCTTCTACTCTCCATCAATTTCTAAAGCATAACAAGAAAGAATAAAAATTCATTTCTCAAC
1 ATTCTCTTCTACTCTCCAACAATTTCTAAAGCATAACAAGAAAGAATAAAAATTCATTTCTCAAC
** *
14282834 ACCTTCAACTCTCAATCAATTTCCGGAAGATAATAAAAAAAATAAAACTAAAACTCATTTCTAAA
66 ACCTTCAACTCTCAATCAATTTCCAAAAGATAACAAAAAAAATAAAACTAAAACTCATTTCTAAA
14282899 TAATAGATCTGTAAA
131 TAATAGATCTGTAAA
*
14282914 ATTCTCTTCTACTCTCCAACAATTTCTAGAA-TATAACAAGAAAGAATAAAAATTCATTTCTCAA
1 ATTCTCTTCTACTCTCCAACAATTTCTA-AAGCATAACAAGAAAGAATAAAAATTCATTTCTCAA
* ** *
14282978 TAGTTTCAACTCTCAATCAATTTCCAAAAGATAACAAAAAAACTAAAACTAAAACT
65 CACCTTCAACTCTCAATCAATTTCCAAAAGATAACAAAAAAAATAAAACTAAAACT
14283034 AAAACCCATT
Statistics
Matches: 110, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
145 108 0.98
146 2 0.02
ACGTcount: A:0.46, C:0.20, G:0.05, T:0.29
Consensus pattern (145 bp):
ATTCTCTTCTACTCTCCAACAATTTCTAAAGCATAACAAGAAAGAATAAAAATTCATTTCTCAAC
ACCTTCAACTCTCAATCAATTTCCAAAAGATAACAAAAAAAATAAAACTAAAACTCATTTCTAAA
TAATAGATCTGTAAA
Found at i:14283669 original size:22 final size:21
Alignment explanation
Indices: 14283644--14283713 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 21
14283634 TTTTAATGAT
14283644 AATTATATTAAGAATTTTATTA
1 AATTATATTAA-AATTTTATTA
**
14283666 AATTAT-TTATTTATTATTATTA
1 AATTATATTA-AAATT-TTATTA
* *
14283688 AATTATATTAAAATATGATTA
1 AATTATATTAAAATTTTATTA
14283709 AATTA
1 AATTA
14283714 GTTATTATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
21 16 0.41
22 20 0.51
23 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (21 bp):
AATTATATTAAAATTTTATTA
Found at i:14283692 original size:11 final size:11
Alignment explanation
Indices: 14283656--14283720 Score: 64
Period size: 10 Copynumber: 6.0 Consensus size: 11
14283646 TTATATTAAG
14283656 AATT-TTATTA
1 AATTATTATTA
14283666 AATTATTTATT-
1 AATTA-TTATTA
*
14283677 TATTATTATTA
1 AATTATTATTA
14283688 AATTA-TATTA
1 AATTATTATTA
* *
14283698 AAATATGATTA
1 AATTATTATTA
14283709 AATTAGTTATTA
1 AATTA-TTATTA
14283721 TTTTTTAACC
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
10 18 0.41
11 16 0.36
12 10 0.23
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (11 bp):
AATTATTATTA
Found at i:14286287 original size:17 final size:17
Alignment explanation
Indices: 14286245--14286287 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
14286235 CAACATATCC
14286245 AAAATAAAAATAAATTT
1 AAAATAAAAATAAATTT
* * *
14286262 AAATTTAAAATATATTTT
1 AAAATAAAAATA-AATTT
14286280 AAAATAAA
1 AAAATAAA
14286288 CTTTTAGTAC
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAATAAAAATAAATTT
Found at i:14292311 original size:26 final size:26
Alignment explanation
Indices: 14292282--14292385 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
14292272 TGGTACAAAT
*
14292282 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14292308 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14292334 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14292360 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14292386 CGATGGGCAT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14299358 original size:26 final size:26
Alignment explanation
Indices: 14299329--14299436 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
14299319 TGGTACAAAT
14299329 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14299355 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14299381 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14299407 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14299433 TGAT
1 TGAT
14299437 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14303453 original size:78 final size:77
Alignment explanation
Indices: 14303348--14303512 Score: 296
Period size: 77 Copynumber: 2.1 Consensus size: 77
14303338 TATAATGATT
*
14303348 TTTTAAAA-AAAGGGGACAACACAAAACAATTTAAAATAAATACTATGTAAAATGATTTAAGATA
1 TTTTAAAATAAAAGGGACAACACAAAACAATTTAAAATAAATACTATGT-AAATGATTTAAGATA
14303412 AAGTAATACGAAA
65 AAGTAATACGAAA
*
14303425 TTTTAAAATAAAAGGGACAACACAAAACAGTTTAAAATAAATACTATGTAAATGATTTAAGATAA
1 TTTTAAAATAAAAGGGACAACACAAAACAATTTAAAATAAATACTATGTAAATGATTTAAGATAA
14303490 AGTAATACGAAA
66 AGTAATACGAAA
14303502 TTTTAAAATAA
1 TTTTAAAATAA
14303513 TAATATATGG
Statistics
Matches: 85, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
77 47 0.55
78 38 0.45
ACGTcount: A:0.55, C:0.07, G:0.11, T:0.27
Consensus pattern (77 bp):
TTTTAAAATAAAAGGGACAACACAAAACAATTTAAAATAAATACTATGTAAATGATTTAAGATAA
AGTAATACGAAA
Found at i:14305486 original size:45 final size:46
Alignment explanation
Indices: 14305437--14305534 Score: 108
Period size: 46 Copynumber: 2.2 Consensus size: 46
14305427 AACTTAAAGA
* * *
14305437 AGATAAGAATTG-GTAATTTCAACTTGCTCCACTGCAACTTTAGGG
1 AGATAAGAATTGTGTAATTTCAACCTGCTCCACTGCAACTTCAGAG
** * * * *
14305482 AGATAAGGTTTGTGTATTTTTATCCTGCTCTACTGCAACTTCAGAG
1 AGATAAGAATTGTGTAATTTCAACCTGCTCCACTGCAACTTCAGAG
14305528 AGATAAG
1 AGATAAG
14305535 GATGGTGGCT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
45 10 0.23
46 33 0.77
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (46 bp):
AGATAAGAATTGTGTAATTTCAACCTGCTCCACTGCAACTTCAGAG
Found at i:14305519 original size:46 final size:45
Alignment explanation
Indices: 14305461--14305757 Score: 165
Period size: 45 Copynumber: 6.6 Consensus size: 45
14305451 AATTTCAACT
* * *
14305461 TGCTCCACTGCAACTTTAGGGAGATAAGGTTTGTGTATTTTTATCC
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTGTATTTTTAT-C
* * ** *
14305507 TGCTCTACTGCAACTTCAGAGAGATAAGGA-TGGTG-GCTTTGATC
1 TGCTCTACTGCAACTTCAGGGAGATAA-GATTTGTGTATTTTTATC
* ** * * * **
14305551 TGCTCCACTATAACTTCAGGGAGATAAGATCTG-CTATCTACAGTC
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTGTATTTTTA-TC
* * * *
14305596 TACTCTACTACAACTTCAGGGATATAAGACTTGTGTATTTTTATCC
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTGTATTTTTAT-C
* ** * ** **
14305642 TGCTCTACTGTAACTTCAAAGAGATAAGGA-TGGTG-GCTTCGATC
1 TGCTCTACTGCAACTTCAGGGAGATAA-GATTTGTGTATTTTTATC
* * * * ** *
14305686 TGCTCCACTGTAACTTCAGGGAGATAAGATCTG-CTATCGTCAGTC
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTGTATTTTTA-TC
* *
14305731 TGCTCTACTACAACTTTAGGGAGATAA
1 TGCTCTACTGCAACTTCAGGGAGATAA
14305758 TACTTTAACT
Statistics
Matches: 184, Mismatches: 57, Indels: 21
0.70 0.22 0.08
Matches are distributed among these distances:
43 4 0.02
44 54 0.29
45 64 0.35
46 59 0.32
47 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (45 bp):
TGCTCTACTGCAACTTCAGGGAGATAAGATTTGTGTATTTTTATC
Found at i:14305568 original size:44 final size:44
Alignment explanation
Indices: 14305518--14305713 Score: 148
Period size: 44 Copynumber: 4.4 Consensus size: 44
14305508 GCTCTACTGC
*
14305518 AACTTCAGAGAGATAAGGATGGTGGCTTTGATCTGCTCCACTAT
1 AACTTCAGGGAGATAAGGATGGTGGCTTTGATCTGCTCCACTAT
* * * * *
14305562 AACTTCAGGGAGATAA-GAT-CT-GCTATCTACAGTCTACTCTACTAC
1 AACTTCAGGGAGATAAGGATGGTGGCT-T-T-GA-TCTGCTCCACTAT
* * ** * * *
14305607 AACTTCAGGGATATAA-GACTTGTGTATTTTTATCCTGCTCTACTGT
1 AACTTCAGGGAGATAAGGA-TGGTG-GCTTTGAT-CTGCTCCACTAT
** * *
14305653 AACTTCAAAGAGATAAGGATGGTGGCTTCGATCTGCTCCACTGT
1 AACTTCAGGGAGATAAGGATGGTGGCTTTGATCTGCTCCACTAT
14305697 AACTTCAGGGAGATAAG
1 AACTTCAGGGAGATAAG
14305714 ATCTGCTATC
Statistics
Matches: 117, Mismatches: 25, Indels: 20
0.72 0.15 0.12
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 4 0.03
44 42 0.36
45 32 0.27
46 28 0.24
47 4 0.03
48 1 0.01
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (44 bp):
AACTTCAGGGAGATAAGGATGGTGGCTTTGATCTGCTCCACTAT
Found at i:14305657 original size:135 final size:135
Alignment explanation
Indices: 14305471--14305762 Score: 478
Period size: 135 Copynumber: 2.2 Consensus size: 135
14305461 TGCTCCACTG
** *
14305471 CAACTTTAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTCTACTGCAACTTCAGAGAGATAAGG
1 CAACTTTAGGGAGATAAGACTTGTGTATTTTTATCCTGCTCTACTGCAACTTCAAAGAGATAAGG
*
14305536 ATGGTGGCTTTGATCTGCTCCACTATAACTTCAGGGAGATAAGATCTGCTATC-TACAGTCTACT
66 ATGGTGGCTTCGATCTGCTCCACTATAACTTCAGGGAGATAAGATCTGCTATCGT-CAGTCTACT
14305600 CTACTA
130 CTACTA
* * *
14305606 CAACTTCAGGGATATAAGACTTGTGTATTTTTATCCTGCTCTACTGTAACTTCAAAGAGATAAGG
1 CAACTTTAGGGAGATAAGACTTGTGTATTTTTATCCTGCTCTACTGCAACTTCAAAGAGATAAGG
* *
14305671 ATGGTGGCTTCGATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTGCTATCGTCAGTCTGCTC
66 ATGGTGGCTTCGATCTGCTCCACTATAACTTCAGGGAGATAAGATCTGCTATCGTCAGTCTACTC
14305736 TACTA
131 TACTA
*
14305741 CAACTTTAGGGAGATAATACTT
1 CAACTTTAGGGAGATAAGACTT
14305763 TAACTTCAAC
Statistics
Matches: 144, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
135 143 0.99
136 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33
Consensus pattern (135 bp):
CAACTTTAGGGAGATAAGACTTGTGTATTTTTATCCTGCTCTACTGCAACTTCAAAGAGATAAGG
ATGGTGGCTTCGATCTGCTCCACTATAACTTCAGGGAGATAAGATCTGCTATCGTCAGTCTACTC
TACTA
Found at i:14305967 original size:44 final size:45
Alignment explanation
Indices: 14305856--14305986 Score: 140
Period size: 45 Copynumber: 2.9 Consensus size: 45
14305846 TGTTTATTTA
*** *
14305856 TAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGC
1 TAGCTTCAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* * * * *
14305901 TATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAATACTT-G-
1 TAGCTTCAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGC
* *
14305945 TGGCTTCAATCCGCTCCACTGCAACTTCAGGAAGATAAGATT
1 TAGCTTCAATCCGCTCCACTGCAACTTCAGGGAGATAAGATT
14305987 TGCCATGATG
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
43 2 0.03
44 33 0.46
45 34 0.48
46 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (45 bp):
TAGCTTCAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
Found at i:14306436 original size:46 final size:46
Alignment explanation
Indices: 14306385--14306490 Score: 133
Period size: 46 Copynumber: 2.3 Consensus size: 46
14306375 AATTTGTGGT
*
14306385 TTCTTCCATCCATCCCAATGCAACTCAGGGGTATAAGATTTGTA-C
1 TTCTTCAATCCATCCCAATGCAACTCAGGGGTATAAGATTTGTATC
* * * * * *
14306430 TATCTTCAATCGATCCCACTGTAGCTCAGGGTTATAGGATTTGTATC
1 T-TCTTCAATCCATCCCAATGCAACTCAGGGGTATAAGATTTGTATC
14306477 TTCTTCAATCCATC
1 TTCTTCAATCCATC
14306491 AATCTAGGTA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
45 1 0.02
46 48 0.94
47 2 0.04
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (46 bp):
TTCTTCAATCCATCCCAATGCAACTCAGGGGTATAAGATTTGTATC
Found at i:14318510 original size:78 final size:77
Alignment explanation
Indices: 14318422--14318578 Score: 278
Period size: 78 Copynumber: 2.0 Consensus size: 77
14318412 ATTTTTTTTA
14318422 AAAAAGGACAACACAAAACAATTTAAAATAAATACTATGTAAAACGATTTAAAATAAAGTAATAC
1 AAAAAGGACAACACAAAACAATTTAAAATAAATACTATGTAAAACGATTTAAAATAAAGTAATAC
14318487 GAAATTTTAAAAT
66 GAAA-TTTAAAAT
* * *
14318500 AAAAGGGACAACACAAAACAATTTAAAATAAATACTATGTAAAATGATTTAAGATAAAGTAATAC
1 AAAAAGGACAACACAAAACAATTTAAAATAAATACTATGTAAAACGATTTAAAATAAAGTAATAC
14318565 GAAATTTAAAAT
66 GAAATTTAAAAT
14318577 AA
1 AA
14318579 TAATATATGG
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
77 10 0.13
78 66 0.87
ACGTcount: A:0.59, C:0.08, G:0.09, T:0.24
Consensus pattern (77 bp):
AAAAAGGACAACACAAAACAATTTAAAATAAATACTATGTAAAACGATTTAAAATAAAGTAATAC
GAAATTTAAAAT
Found at i:14318834 original size:25 final size:25
Alignment explanation
Indices: 14318805--14318854 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
14318795 AAAAGAGGAA
* *
14318805 GTATAATAATAATAATAATCACATC
1 GTATAATAATAACAACAATCACATC
14318830 GTATAATAATAACAACAATCACATC
1 GTATAATAATAACAACAATCACATC
14318855 CACATTTCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.52, C:0.16, G:0.04, T:0.28
Consensus pattern (25 bp):
GTATAATAATAACAACAATCACATC
Found at i:14324177 original size:18 final size:18
Alignment explanation
Indices: 14324156--14324200 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
14324146 AATAATTTTT
14324156 TAAAAAAATATAAAAATA
1 TAAAAAAATATAAAAATA
*
14324174 TAAAAAAATTTAAAAATA
1 TAAAAAAATATAAAAATA
*
14324192 -AAAATAATA
1 TAAAAAAATA
14324201 AATTTCTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (18 bp):
TAAAAAAATATAAAAATA
Found at i:14328472 original size:22 final size:22
Alignment explanation
Indices: 14328447--14328489 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14328437 TATCCAAACA
14328447 ATAATAATAAAATAGTAGCAAC
1 ATAATAATAAAATAGTAGCAAC
* * *
14328469 ATAATAGTGAAATGGTAGCAA
1 ATAATAATAAAATAGTAGCAA
14328490 AATATGTAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.07, G:0.16, T:0.23
Consensus pattern (22 bp):
ATAATAATAAAATAGTAGCAAC
Found at i:14335139 original size:14 final size:14
Alignment explanation
Indices: 14335097--14335142 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
14335087 CATATTATAA
14335097 AATAATTCATAA-T
1 AATAATTCATAATT
* *
14335110 AGTAATTTA-AAGTT
1 AATAATTCATAA-TT
14335124 AATAATTCATAATT
1 AATAATTCATAATT
14335138 AATAA
1 AATAA
14335143 AACCGTTGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
12 2 0.08
13 7 0.27
14 15 0.58
15 2 0.08
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39
Consensus pattern (14 bp):
AATAATTCATAATT
Found at i:14342240 original size:26 final size:26
Alignment explanation
Indices: 14342211--14342266 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
14342201 TGATACAAAT
*
14342211 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGCTCCA
14342237 TGATAATGGGTTAGGTAAATGCTCCA
1 TGATAATGGGTTAGGTAAATGCTCCA
14342263 TGAT
1 TGAT
14342267 TGGAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.09, G:0.27, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGCTCCA
Found at i:14347466 original size:110 final size:110
Alignment explanation
Indices: 14347297--14347516 Score: 413
Period size: 110 Copynumber: 2.0 Consensus size: 110
14347287 ATTTAGTTTC
* * *
14347297 CTGTAGTCAATACAAACTCTCCATTCTATGACTGTCCTTATTGGGATTGATTCATTCTTCTCGTC
1 CTGTAGTCAATACAAACTCTCCATCCTATGACTGTCCTTATTGGGATTAATTCATTCTTCTCATC
14347362 GGTCACAACCGTCATGCCTCCTTTCTTAGGGACAACCTGTACTGG
66 GGTCACAACCGTCATGCCTCCTTTCTTAGGGACAACCTGTACTGG
14347407 CTGTAGTCAATACAAACTCTCCATCCTATGACTGTCCTTATTGGGATTAATTCATTCTTCTCATC
1 CTGTAGTCAATACAAACTCTCCATCCTATGACTGTCCTTATTGGGATTAATTCATTCTTCTCATC
14347472 GGTCACAACCGTCATGCCTCCTTTCTTAGGGACAACCTGTACTGG
66 GGTCACAACCGTCATGCCTCCTTTCTTAGGGACAACCTGTACTGG
14347517 ACTTACCCAA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 107 1.00
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (110 bp):
CTGTAGTCAATACAAACTCTCCATCCTATGACTGTCCTTATTGGGATTAATTCATTCTTCTCATC
GGTCACAACCGTCATGCCTCCTTTCTTAGGGACAACCTGTACTGG
Found at i:14352487 original size:14 final size:14
Alignment explanation
Indices: 14352468--14352501 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
14352458 AGTGTGTGGG
14352468 TTTGGGAATTAGGT
1 TTTGGGAATTAGGT
14352482 TTTGGGAATTAGGT
1 TTTGGGAATTAGGT
14352496 TTTGGG
1 TTTGGG
14352502 TGATGTGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (14 bp):
TTTGGGAATTAGGT
Found at i:14366387 original size:55 final size:54
Alignment explanation
Indices: 14366249--14366387 Score: 154
Period size: 55 Copynumber: 2.5 Consensus size: 54
14366239 TGGCCGTGAG
*
14366249 CGAACCTACCAAAACAACACGGGCGTGCGACACGCCCGTGCCTTAAAACCGTGGC
1 CGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGCC-TAAAACCGTGGC
** ** * *
14366304 CGAACCTGTTAAATTAACACGGGCGTGCGACTCGCCCGTGCC-AAGCAACCGTGGG
1 CGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGCCTAA--AACCGTGGC
* * *
14366359 TGAACCTGCCAAAACAACATGGGTGTGCG
1 CGAACCTGCCAAAACAACACGGGCGTGCG
14366388 CCTTTCTACA
Statistics
Matches: 68, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
53 2 0.03
55 66 0.97
ACGTcount: A:0.27, C:0.32, G:0.27, T:0.14
Consensus pattern (54 bp):
CGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGCCTAAAACCGTGGC
Found at i:14366907 original size:24 final size:24
Alignment explanation
Indices: 14366878--14366927 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
14366868 GACTAATGAA
14366878 CCTCCACATCCACCGGAGTATCCT
1 CCTCCACATCCACCGGAGTATCCT
*
14366902 CCTCCACATCCACCGGAGTATTCT
1 CCTCCACATCCACCGGAGTATCCT
14366926 CC
1 CC
14366928 AAAACTCCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.46, G:0.12, T:0.22
Consensus pattern (24 bp):
CCTCCACATCCACCGGAGTATCCT
Found at i:14370301 original size:12 final size:12
Alignment explanation
Indices: 14370284--14370316 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
14370274 CCAATTCCAT
14370284 TTACCAAAATCA
1 TTACCAAAATCA
14370296 TTACCAAAA-CA
1 TTACCAAAATCA
*
14370307 TAACCAAAAT
1 TTACCAAAAT
14370317 GACCAAAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.21
Consensus pattern (12 bp):
TTACCAAAATCA
Found at i:14375595 original size:18 final size:18
Alignment explanation
Indices: 14375572--14375609 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14375562 ACACAGTGTG
*
14375572 TAATCCTCACAGAAAACA
1 TAATCCCCACAGAAAACA
14375590 TAATCCCCACAGAAAACA
1 TAATCCCCACAGAAAACA
14375608 TA
1 TA
14375610 CATACAGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.29, G:0.05, T:0.16
Consensus pattern (18 bp):
TAATCCCCACAGAAAACA
Found at i:14376452 original size:50 final size:50
Alignment explanation
Indices: 14376396--14376498 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
14376386 TCTTTGAAAG
14376396 TAAGTAATTTAGATAACCTTACTTGATAATTTTTGTGTTTTTGGAACCCC
1 TAAGTAATTTAGATAACCTTACTTGATAATTTTTGTGTTTTTGGAACCCC
14376446 TAAGTAATTTAGATAACCTTACTTGATAATTTTTGTGTTTTTGGAACCCC
1 TAAGTAATTTAGATAACCTTACTTGATAATTTTTGTGTTTTTGGAACCCC
14376496 TAA
1 TAA
14376499 AGCTTAATCT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.44
Consensus pattern (50 bp):
TAAGTAATTTAGATAACCTTACTTGATAATTTTTGTGTTTTTGGAACCCC
Found at i:14377761 original size:25 final size:25
Alignment explanation
Indices: 14377727--14377777 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
14377717 TGTAGCAATT
14377727 AAGTGCAAATGAAATGAAGAATAAG
1 AAGTGCAAATGAAATGAAGAATAAG
*
14377752 AAGTGTAAATGAAATGAAGAATAAG
1 AAGTGCAAATGAAATGAAGAATAAG
14377777 A
1 A
14377778 TAGAGAGGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.57, C:0.02, G:0.24, T:0.18
Consensus pattern (25 bp):
AAGTGCAAATGAAATGAAGAATAAG
Found at i:14378738 original size:21 final size:21
Alignment explanation
Indices: 14378704--14378744 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14378694 GTCAGAATGG
* *
14378704 CCACACGGGCGTGTTGCCCTT
1 CCACACGAGCGTGTGGCCCTT
*
14378725 CCACACGAGTGTGTGGCCCT
1 CCACACGAGCGTGTGGCCCT
14378745 ATTTTATGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.37, G:0.29, T:0.22
Consensus pattern (21 bp):
CCACACGAGCGTGTGGCCCTT
Found at i:14379952 original size:9 final size:9
Alignment explanation
Indices: 14379938--14379970 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
14379928 TTCGCATCAT
14379938 TTTCTCTTA
1 TTTCTCTTA
14379947 TTTCTCTTA
1 TTTCTCTTA
14379956 TTTCTCTTA
1 TTTCTCTTA
14379965 TTTCTC
1 TTTCTC
14379971 GACAGTAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.09, C:0.24, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTCTCTTA
Found at i:14387245 original size:15 final size:17
Alignment explanation
Indices: 14387210--14387248 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
14387200 GTGAAAGAAT
14387210 GAAAAAGAAAATGGAGA
1 GAAAAAGAAAATGGAGA
*
14387227 GAAAAA-AAAAT-GAGG
1 GAAAAAGAAAATGGAGA
14387242 GAAAAAG
1 GAAAAAG
14387249 TAAAGGATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 9 0.45
16 5 0.25
17 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (17 bp):
GAAAAAGAAAATGGAGA
Found at i:14392910 original size:28 final size:30
Alignment explanation
Indices: 14392854--14392916 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 30
14392844 TTCTTATGCA
*
14392854 ATTAAATTTTACCACTAAACTTTAAATTTT
1 ATTAAAATTTACCACTAAACTTTAAATTTT
* *
14392884 ATTAAAATTTGCCAC-AAA-TTTAGATTTT
1 ATTAAAATTTACCACTAAACTTTAAATTTT
*
14392912 TTTAA
1 ATTAA
14392917 TTAAATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 13 0.45
29 3 0.10
30 13 0.45
ACGTcount: A:0.40, C:0.11, G:0.03, T:0.46
Consensus pattern (30 bp):
ATTAAAATTTACCACTAAACTTTAAATTTT
Found at i:14400031 original size:19 final size:18
Alignment explanation
Indices: 14399992--14400037 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
14399982 CTTTGATTAA
**
14399992 TAACTAATTAATTATAAT
1 TAACTAATTAAACATAAT
*
14400010 TAACCTAATTAAACATAGT
1 TAA-CTAATTAAACATAAT
14400029 TAACTAATT
1 TAACTAATT
14400038 TTAAGCTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (18 bp):
TAACTAATTAAACATAAT
Found at i:14405477 original size:17 final size:17
Alignment explanation
Indices: 14405444--14405477 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14405434 GTCTATTCAA
*
14405444 TGAATTCAGGTTGCTAT
1 TGAATTCAGATTGCTAT
*
14405461 TGAATTCAGATTTCTAT
1 TGAATTCAGATTGCTAT
14405478 AAATAGCCGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (17 bp):
TGAATTCAGATTGCTAT
Found at i:14405578 original size:18 final size:18
Alignment explanation
Indices: 14405555--14405591 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
14405545 AAATATAGAT
14405555 ATTTCAGAAATTGCTGCC
1 ATTTCAGAAATTGCTGCC
*
14405573 ATTTCATAAATTGCTGCC
1 ATTTCAGAAATTGCTGCC
14405591 A
1 A
14405592 CCCACAATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.35
Consensus pattern (18 bp):
ATTTCAGAAATTGCTGCC
Found at i:14406833 original size:9 final size:8
Alignment explanation
Indices: 14406817--14406841 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
14406807 ACTTGCACTC
14406817 TCTTTTTT
1 TCTTTTTT
14406825 TCTTTTTT
1 TCTTTTTT
14406833 TCTTTTTT
1 TCTTTTTT
14406841 T
1 T
14406842 GAGGCCTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TCTTTTTT
Found at i:14407094 original size:21 final size:20
Alignment explanation
Indices: 14407069--14407112 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
14407059 TTGAGTTTGA
* *
14407069 TTTTTCTATTATTTATATTTT
1 TTTTTC-ATTATTTAAAATTT
*
14407090 TTTTTCATTTTTTAAAATTT
1 TTTTTCATTATTTAAAATTT
14407110 TTT
1 TTT
14407113 AATTAATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTTCATTATTTAAAATTT
Found at i:14407133 original size:22 final size:22
Alignment explanation
Indices: 14407108--14407175 Score: 79
Period size: 22 Copynumber: 3.1 Consensus size: 22
14407098 TTTTTAAAAT
14407108 TTTTTAATTAATAAATATATTA
1 TTTTTAATTAATAAATATATTA
*
14407130 TTTTTAATT-TTATAAT-TCA-TA
1 TTTTTAATTAATA-AATAT-ATTA
*
14407151 TTTTTAATTAATAAATATTTTA
1 TTTTTAATTAATAAATATATTA
14407173 TTT
1 TTT
14407176 ATATAAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
21 17 0.45
22 21 0.55
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTTAATTAATAAATATATTA
Found at i:14407168 original size:17 final size:17
Alignment explanation
Indices: 14407152--14407184 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14407142 TAATTCATAT
14407152 TTTTAATTA-ATAAATA
1 TTTTAATTATATAAATA
*
14407168 TTTTATTTATATAAATA
1 TTTTAATTATATAAATA
14407185 AAATAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTTAATTATATAAATA
Found at i:14407362 original size:99 final size:97
Alignment explanation
Indices: 14407152--14407350 Score: 217
Period size: 99 Copynumber: 2.0 Consensus size: 97
14407142 TAATTCATAT
* *
14407152 TTTTAATTAATAAAT-ATTTTATTTATATAAATAAAATAATATATATGTAATTATATAATAAAAT
1 TTTTAATTAATAACTCA-TTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAAT
* * * * **
14407216 CATATATTTTATATATATCATTATGTTAAAAAA
65 AATATATTTGAGATAAATCATTATAATAAAAAA
*
14407249 TTTTAATTAATAACTCATTTATTTATATATATATAAATTAATAAATATGTAATTATATAATGATA
1 TTTTAATTAATAACTCATTTATTTATATA-A-ATAAAATAATAAATATGTAATTATATAAT-A-A
* *
14407314 AATAAATATATTTGAGA-AAATGA-TA-AATATAAAA
62 AAT-AATATATTTGAGATAAATCATTATAATAAAAAA
14407348 TTT
1 TTT
14407351 CATTATATAA
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
97 26 0.31
98 2 0.02
99 36 0.42
100 3 0.04
101 8 0.09
102 10 0.12
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.45
Consensus pattern (97 bp):
TTTTAATTAATAACTCATTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAATA
ATATATTTGAGATAAATCATTATAATAAAAAA
Found at i:14407610 original size:23 final size:23
Alignment explanation
Indices: 14407553--14407621 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 23
14407543 AATTAAAAAC
**
14407553 ATTAATTAGAAAAATTGAATAATT
1 ATTAATTA-AAAAATAAAATAATT
* *
14407577 -TT-ATTATAAAATAAAATATTT
1 ATTAATTAAAAAATAAAATAATT
*
14407598 ATTAATTAAAAAATTAAAAAAATT
1 ATTAATTAAAAAA-TAAAATAATT
14407622 GAACAATTTC
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
21 11 0.31
22 6 0.17
23 10 0.29
24 8 0.23
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (23 bp):
ATTAATTAAAAAATAAAATAATT
Found at i:14407636 original size:53 final size:57
Alignment explanation
Indices: 14407526--14407637 Score: 160
Period size: 58 Copynumber: 2.0 Consensus size: 57
14407516 AAAACACTTG
* * *
14407526 AAAATAATATATTTATTAATTAAAAACATTAATTAGAAAAATTGAATAATTTTATTAT
1 AAAATAAAATATTTATTAATTAAAAACATTAA-TAGAAAAATTGAACAATTTCATTAT
14407584 AAAATAAAATATTTATTAATTAAAAA-ATT-A-A-AAAAATTGAACAATTTCATTAT
1 AAAATAAAATATTTATTAATTAAAAACATTAATAGAAAAATTGAACAATTTCATTAT
14407637 A
1 A
14407638 GGTTCAACAC
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
53 21 0.41
54 1 0.02
56 1 0.02
57 3 0.06
58 25 0.49
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (57 bp):
AAAATAAAATATTTATTAATTAAAAACATTAATAGAAAAATTGAACAATTTCATTAT
Found at i:14408566 original size:16 final size:18
Alignment explanation
Indices: 14408545--14408580 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
14408535 ACTAAAATAG
14408545 AAATCTT-GTG-AGAAAA
1 AAATCTTAGTGAAGAAAA
14408561 AAATCTTAGTGAAGAAAA
1 AAATCTTAGTGAAGAAAA
14408579 AA
1 AA
14408581 GAGTATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 3 0.17
18 8 0.44
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.22
Consensus pattern (18 bp):
AAATCTTAGTGAAGAAAA
Found at i:14410495 original size:19 final size:19
Alignment explanation
Indices: 14410471--14410510 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
14410461 AAGAAGGCAA
*
14410471 GCTTTGTTTGTTGATCACT
1 GCTTTGTTCGTTGATCACT
14410490 GCTTTGTTCGTTGATCACT
1 GCTTTGTTCGTTGATCACT
14410509 GC
1 GC
14410511 AGTTGTGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.20, G:0.23, T:0.47
Consensus pattern (19 bp):
GCTTTGTTCGTTGATCACT
Found at i:14410766 original size:20 final size:22
Alignment explanation
Indices: 14410724--14410769 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
14410714 TTAAATATAA
*
14410724 ATATAAATATTTATTTTATTTT
1 ATATAAATATTTAGTTTATTTT
14410746 ATATAAATATTT-GTTTA-TTT
1 ATATAAATATTTAGTTTATTTT
14410766 ATAT
1 ATAT
14410770 TCATATTTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.30
21 4 0.17
22 12 0.52
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
ATATAAATATTTAGTTTATTTT
Found at i:14414533 original size:93 final size:90
Alignment explanation
Indices: 14414344--14414533 Score: 204
Period size: 93 Copynumber: 2.1 Consensus size: 90
14414334 AGTTTAATAG
*
14414344 TATGCAAACACTAGTGGTTTATCCACAAACTTACTGGCAGCTCTTATTTGCTAATACGTTGTGTA
1 TATGCAAACACTAGTGGTTTATCCACAAACTTACTGGCAGCTCTTATCTGCTAATACGTTGTGTA
* *
14414409 ATCACAACTATTGGCAGCGTTTTAA
66 ATCACAACTACTGGCAGCGTATTAA
** * * ** *
14414434 CCTGCAAGCACTAGTGGTTTATCCATAATTTTTTTACTGGCAGCTGTTATCTGC-AA-ACTTGTT
1 TATGCAAACACTAGTGGTTTATCCACAA---ACTTACTGGCAGCTCTTATCTGCTAATAC--GTT
** *
14414497 GTGTAATCACAACTACTGGTGGTGTATTAA
61 GTGTAATCACAACTACTGGCAGCGTATTAA
14414527 TATGCAA
1 TATGCAA
14414534 TACTGGTGGC
Statistics
Matches: 80, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
90 24 0.30
91 2 0.03
92 2 0.03
93 52 0.65
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (90 bp):
TATGCAAACACTAGTGGTTTATCCACAAACTTACTGGCAGCTCTTATCTGCTAATACGTTGTGTA
ATCACAACTACTGGCAGCGTATTAA
Found at i:14416663 original size:17 final size:19
Alignment explanation
Indices: 14416633--14416675 Score: 63
Period size: 17 Copynumber: 2.3 Consensus size: 19
14416623 TAATAGAAAT
14416633 TATTTTAAGCATATATTT-A
1 TATTTTAA-CATATATTTAA
14416652 TATTTTAA-ATATATTTAA
1 TATTTTAACATATATTTAA
14416670 TATTTT
1 TATTTT
14416676 CTTTTAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.35
18 7 0.30
19 8 0.35
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (19 bp):
TATTTTAACATATATTTAA
Found at i:14417398 original size:23 final size:23
Alignment explanation
Indices: 14417372--14417416 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
14417362 AAAAAATATG
14417372 TTGTTTTCTCATTAATTTTAAAT
1 TTGTTTTCTCATTAATTTTAAAT
*
14417395 TTGTTTTGTCATTAATTTTAAA
1 TTGTTTTCTCATTAATTTTAAA
14417417 CACGAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.60
Consensus pattern (23 bp):
TTGTTTTCTCATTAATTTTAAAT
Found at i:14418326 original size:23 final size:25
Alignment explanation
Indices: 14418300--14418346 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
14418290 TATCATTCAT
*
14418300 TTCATTATATC-A-ATATTTTATGC
1 TTCATCATATCTATATATTTTATGC
*
14418323 TTCATCATTTCTATATATTTTATG
1 TTCATCATATCTATATATTTTATG
14418347 AATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.28, C:0.13, G:0.04, T:0.55
Consensus pattern (25 bp):
TTCATCATATCTATATATTTTATGC
Found at i:14418667 original size:46 final size:46
Alignment explanation
Indices: 14418607--14418872 Score: 343
Period size: 46 Copynumber: 6.0 Consensus size: 46
14418597 TTTGACGTGA
* * * * * *
14418607 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
14418653 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
14418699 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
14418745 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
14418791 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
14418829 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
14418873 AGAGCACACT
Statistics
Matches: 196, Mismatches: 15, Indels: 18
0.86 0.07 0.08
Matches are distributed among these distances:
38 33 0.17
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 149 0.76
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:14418837 original size:38 final size:38
Alignment explanation
Indices: 14418786--14418861 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
14418776 CATTTCATAT
14418786 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
14418824 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
14418862 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:14421064 original size:27 final size:27
Alignment explanation
Indices: 14420992--14421071 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
14420982 TTTCTTTCTT
*
14420992 TATTTA-CTAATAAAATAATAATAA-AA
1 TATTTATCTAATTAAATAATAA-AATAA
* *
14421018 TATCTTAT-TAAAGT-ATTAATAAAATAA
1 TAT-TTATCT-AATTAAATAATAAAATAA
14421045 TATTTATCTAATTAAATAATATAAATA
1 TATTTATCTAATTAAATAATA-AAATA
14421072 TCAAAATATC
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
26 12 0.29
27 23 0.55
28 7 0.17
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (27 bp):
TATTTATCTAATTAAATAATAAAATAA
Found at i:14424104 original size:18 final size:17
Alignment explanation
Indices: 14424083--14424124 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
14424073 TAACATAATG
14424083 ATATATAAAAA-TAATACT
1 ATATATAAAAAGT-ATA-T
14424101 ATATATAAAAAGTATAT
1 ATATATAAAAAGTATAT
14424118 ATATATA
1 ATATATA
14424125 CACGTATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.35
18 14 0.61
19 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
ATATATAAAAAGTATAT
Done.