Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 44 of 343
Found at i:14424236 original size:22 final size:21
Alignment explanation
Indices: 14424206--14424256 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
14424196 CATGTACATA
*
14424206 ATATGGTATTTAAAAAATATAT
1 ATATAGTATTT-AAAAATATAT
*
14424228 ATATAGTA-TTAAAAATGTAT
1 ATATAGTATTTAAAAATATAT
*
14424248 ACATAGTAT
1 ATATAGTAT
14424257 ATATACTAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 16 0.64
21 2 0.08
22 7 0.28
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.39
Consensus pattern (21 bp):
ATATAGTATTTAAAAATATAT
Found at i:14424241 original size:20 final size:20
Alignment explanation
Indices: 14424218--14424256 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14424208 ATGGTATTTA
*
14424218 AAAAATATATATATAGTATT
1 AAAAATATATACATAGTATT
*
14424238 AAAAATGTATACATAGTAT
1 AAAAATATATACATAGTAT
14424257 ATATACTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (20 bp):
AAAAATATATACATAGTATT
Found at i:14425097 original size:22 final size:20
Alignment explanation
Indices: 14425072--14425123 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 20
14425062 ACGATAATGG
14425072 TAATGGTAAATATAATAATAAA
1 TAATGGTAAA-A-AATAATAAA
* *
14425094 TAAT-ATTAAAAATAATAAA
1 TAATGGTAAAAAATAATAAA
*
14425113 AAATGGTAAAA
1 TAATGGTAAAA
14425124 GTAATATAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
19 12 0.50
20 5 0.21
21 3 0.12
22 4 0.17
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (20 bp):
TAATGGTAAAAAATAATAAA
Found at i:14425122 original size:19 final size:19
Alignment explanation
Indices: 14425085--14425135 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
14425075 TGGTAAATAT
* *
14425085 AATAATAAATAATATTAAA
1 AATAATAAAAAATAGTAAA
*
14425104 AATAATAAAAAATGGTAAA
1 AATAATAAAAAATAGTAAA
*
14425123 AGTAATATAAAAA
1 AATAATA-AAAAA
14425136 AACTAAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 22 0.81
20 5 0.19
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (19 bp):
AATAATAAAAAATAGTAAA
Found at i:14427085 original size:20 final size:21
Alignment explanation
Indices: 14427060--14427107 Score: 80
Period size: 22 Copynumber: 2.3 Consensus size: 21
14427050 TAATTTAATC
14427060 TTTAAAT-AAAAATAAATATA
1 TTTAAATAAAAAATAAATATA
14427080 TTTAAATAAAAAAATAAATATA
1 TTTAAAT-AAAAAATAAATATA
14427102 TTTAAA
1 TTTAAA
14427108 ATTACATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 7 0.27
22 19 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
TTTAAATAAAAAATAAATATA
Found at i:14427454 original size:31 final size:29
Alignment explanation
Indices: 14427380--14427461 Score: 92
Period size: 31 Copynumber: 2.7 Consensus size: 29
14427370 TTTATTTTAT
* *
14427380 TTTTTTAAAATTAGAATTAAATTGATAAA
1 TTTTTTAAAATTAAAATAAAATTGATAAA
* *
14427409 TTTTGTAAATATTAAAAGTAAAATTTGTTAAA
1 TTTTTTAAA-ATTAAAA-TAAAA-TTGATAAA
14427441 TTTTTTAAAATTAAAACTAAA
1 TTTTTTAAAATTAAAA-TAAA
14427462 TTAATTGAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
29 8 0.18
30 6 0.14
31 15 0.34
32 15 0.34
ACGTcount: A:0.49, C:0.01, G:0.06, T:0.44
Consensus pattern (29 bp):
TTTTTTAAAATTAAAATAAAATTGATAAA
Found at i:14427617 original size:39 final size:39
Alignment explanation
Indices: 14427565--14427639 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 39
14427555 CACTTAATTT
*
14427565 TTTTTCTCCATTTAATTAATCTAATTAAAATAATTGAAA
1 TTTTTCTCAATTTAATTAATCTAATTAAAATAATTGAAA
* * * *
14427604 TTTTTCTTAATTTAGTTACTTTAATTAAAATAATTG
1 TTTTTCTCAATTTAATTAATCTAATTAAAATAATTG
14427640 TGTGAATTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (39 bp):
TTTTTCTCAATTTAATTAATCTAATTAAAATAATTGAAA
Found at i:14428965 original size:21 final size:18
Alignment explanation
Indices: 14428922--14428966 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 18
14428912 ACAAAAGTAT
14428922 ATACATAATATATATGAA
1 ATACATAATATATATGAA
14428940 A-ACATAATATAGTATTAGAA
1 ATACATAATATA-TA-T-GAA
14428960 ATACATA
1 ATACATA
14428967 TTAGAAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 10 0.43
18 3 0.13
19 1 0.04
20 4 0.17
21 5 0.22
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.31
Consensus pattern (18 bp):
ATACATAATATATATGAA
Found at i:14429305 original size:22 final size:23
Alignment explanation
Indices: 14429257--14429319 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 23
14429247 ATATACACGA
*
14429257 AATAGTATA-AAAATATATAACT
1 AATAATATATAAAATATATAACT
14429279 AATAATAT-TAAAATATAT-ACAT
1 AATAATATATAAAATATATAAC-T
* *
14429301 GATAATATATAAAAAATAT
1 AATAATATATAAAATATAT
14429320 TAGAAAATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 2 0.06
22 24 0.69
23 9 0.26
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (23 bp):
AATAATATATAAAATATATAACT
Found at i:14429389 original size:13 final size:13
Alignment explanation
Indices: 14429371--14429440 Score: 54
Period size: 13 Copynumber: 5.1 Consensus size: 13
14429361 TATAGTATTA
14429371 AATATTAAAATAT
1 AATATTAAAATAT
14429384 AATATTAAAATA-
1 AATATTAAAATAT
*
14429396 CATA-TAATATATAT
1 AATATTAA-A-ATAT
14429410 AAATATATACACAATAT
1 -AATAT-TA-A-AATAT
*
14429427 AGTATTAAAATAT
1 AATATTAAAATAT
14429440 A
1 A
14429441 TATACATAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
11 3 0.07
12 4 0.09
13 21 0.46
14 1 0.02
15 5 0.11
16 4 0.09
17 6 0.13
18 2 0.04
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (13 bp):
AATATTAAAATAT
Found at i:14429399 original size:40 final size:43
Alignment explanation
Indices: 14429328--14429455 Score: 133
Period size: 43 Copynumber: 3.0 Consensus size: 43
14429318 ATTAGAAAAT
*
14429328 ATATGTACACAATAT-ATATATAAATATAC--ATAATATAGTATTAA
1 ATATATACACAATATAATAT-TAAA-ATACATATAATATA-TA-TAA
14429372 ATAT-TA-A-AATATAATATTAAAATACATATAATATATATAA
1 ATATATACACAATATAATATTAAAATACATATAATATATATAA
* *
14429412 ATATATACACAATATAGTATTAAAATATATATACATAATATATA
1 ATATATACACAATATAATATTAAAATACATATA-AT-ATATATA
14429456 CTTATTAGAT
Statistics
Matches: 74, Mismatches: 2, Indels: 15
0.81 0.02 0.16
Matches are distributed among these distances:
40 11 0.15
41 13 0.18
42 14 0.19
43 23 0.31
44 6 0.08
45 7 0.09
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.37
Consensus pattern (43 bp):
ATATATACACAATATAATATTAAAATACATATAATATATATAA
Found at i:14429426 original size:26 final size:26
Alignment explanation
Indices: 14429323--14429453 Score: 72
Period size: 26 Copynumber: 4.8 Consensus size: 26
14429313 AAAATATTAG
*
14429323 AAAATATATGTACACAATAT-ATA-T
1 AAAATATATATACACAATATAATATT
* *
14429347 ATAAATATACATA-ATATAGTATTAAATATT
1 A-AAATATATATACACA-A-TA-T-AATATT
* *
14429377 AAAATATAATATTAAAATACATATAATATAT
1 AAAATAT-ATA-T-ACACA-ATATAATAT-T
* *
14429408 ATAA-ATATATACACAATATAGTATT
1 AAAATATATATACACAATATAATATT
*
14429433 AAAATATATATACATAATATA
1 AAAATATATATACACAATATA
14429454 TACTTATTAG
Statistics
Matches: 83, Mismatches: 11, Indels: 24
0.70 0.09 0.20
Matches are distributed among these distances:
24 3 0.04
25 14 0.17
26 25 0.30
27 4 0.05
28 1 0.01
29 12 0.14
30 11 0.13
31 6 0.07
32 3 0.04
33 4 0.05
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.36
Consensus pattern (26 bp):
AAAATATATATACACAATATAATATT
Found at i:14429467 original size:26 final size:26
Alignment explanation
Indices: 14429412--14429479 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 26
14429402 ATATATATAA
* *
14429412 ATATATACACAATATAGTA-TTAAAAT
1 ATATATACATAATATA-TACTTAAAAG
**
14429438 ATATATACATAATATATACTTATTAG
1 ATATATACATAATATATACTTAAAAG
14429464 ATATA-A-ATAA-ATATAC
1 ATATATACATAATATATAC
14429480 GTACATACAT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 6 0.16
24 4 0.11
25 3 0.08
26 24 0.65
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (26 bp):
ATATATACATAATATATACTTAAAAG
Found at i:14430089 original size:24 final size:24
Alignment explanation
Indices: 14430059--14430115 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
14430049 TCGGCAATCG
*
14430059 GACCGCCGTCCGTCCTTCGCCAGC
1 GACCGCCGTCCGTCCGTCGCCAGC
* *
14430083 GATCGCCATCCGTCCGTCGCCAGC
1 GACCGCCGTCCGTCCGTCGCCAGC
14430107 GACCGCCGT
1 GACCGCCGT
14430116 ATACGGCGGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.11, C:0.47, G:0.26, T:0.16
Consensus pattern (24 bp):
GACCGCCGTCCGTCCGTCGCCAGC
Found at i:14431384 original size:13 final size:13
Alignment explanation
Indices: 14431366--14431401 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
14431356 AATTGACTCT
*
14431366 TTAAAAATAGACA
1 TTAAAAATAGAAA
14431379 TTAAAAATAGAAA
1 TTAAAAATAGAAA
*
14431392 TTGAAAATAG
1 TTAAAAATAG
14431402 CTCAGCACGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.25
Consensus pattern (13 bp):
TTAAAAATAGAAA
Found at i:14431646 original size:14 final size:14
Alignment explanation
Indices: 14431627--14431675 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
14431617 GTTGATTTTT
*
14431627 TTGAAAAGTAGAAA
1 TTGAAAAGAAGAAA
*
14431641 TTGAAAAGAAAAAA
1 TTGAAAAGAAGAAA
*
14431655 TTGAAAAGCAGAAA
1 TTGAAAAGAAGAAA
14431669 TTGAAAA
1 TTGAAAA
14431676 TTCCTCAGCG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.61, C:0.02, G:0.18, T:0.18
Consensus pattern (14 bp):
TTGAAAAGAAGAAA
Found at i:14431660 original size:91 final size:91
Alignment explanation
Indices: 14431473--14431661 Score: 249
Period size: 91 Copynumber: 2.1 Consensus size: 91
14431463 AAAGCAGATT
*
14431473 TTGAAAATACCTTGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
1 TTGAAAATACCTAGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
*
14431538 AAAATATAAATTGAAAAAAAAAGAAA
66 AAAATAGAAATTGAAAAAAAAAGAAA
* * * * *
14431564 CTGAAAATACCTCAG-CATGTGAGCTGGGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTT
1 TTGAAAATACCT-AGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
* *
14431628 TGAAAAGTAGAAATTG-AAAAGAAA-AAA
63 TGAAAAATAGAAATTGAAAAAAAAAGAAA
14431655 TTGAAAA
1 TTGAAAA
14431662 GCAGAAATTG
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
91 59 0.69
92 8 0.09
93 18 0.21
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (91 bp):
TTGAAAATACCTAGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
AAAATAGAAATTGAAAAAAAAAGAAA
Found at i:14431784 original size:73 final size:73
Alignment explanation
Indices: 14431655--14431880 Score: 348
Period size: 73 Copynumber: 3.1 Consensus size: 73
14431645 AAAGAAAAAA
* * *
14431655 TTGAAAAGCAGAAATTGAAAATT-CCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATG
1 TTGAAAAACAGAAATTG-AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
14431719 AGTTGATTT
65 AGTTGATTT
* *
14431728 TTGACAAACAG-AATTCGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATG
1 TTGAAAAACAGAAATT-GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
14431792 AGTCGATTT
65 AGTTGATTT
*
14431801 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
14431866 GTTGATTTT
66 GTTGA-TTT
14431875 TTGAAA
1 TTGAAA
14431881 CATAAATTAA
Statistics
Matches: 139, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
72 9 0.06
73 117 0.84
74 13 0.09
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:14431953 original size:159 final size:157
Alignment explanation
Indices: 14431749--14432050 Score: 523
Period size: 159 Copynumber: 1.9 Consensus size: 157
14431739 AATTCGAAAT
* *
14431749 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTTGAAAAACAGAA
1 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAA
14431814 ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
66 ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGA
*
14431879 AACATAAATTAAAAAAAAAAAACTGAACA
130 AACAGAAA-TAAAAAAAAAAAACTGAACA
* * *
14431908 TACCTCAGCGTGCCCTGAGGCTTAGCTCACCTCTCGCAATATGAGTCGCTTTTTGAAAAACAGAA
1 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAA
*
14431973 ATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
66 ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
14432038 ACAGAAATAAAAA
131 ACAGAAATAAAAA
14432051 TATTAGAATA
Statistics
Matches: 136, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
157 6 0.04
158 14 0.10
159 116 0.85
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (157 bp):
TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAA
ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
ACAGAAATAAAAAAAAAAAACTGAACA
Found at i:14432010 original size:73 final size:71
Alignment explanation
Indices: 14431902--14432045 Score: 207
Period size: 73 Copynumber: 2.0 Consensus size: 71
14431892 AAAAAAAAAC
* * * *
14431902 TGAACATACCTCAGCGTGCCCTGAGGCTTAGCTCACCTCTCGCAATATGAGTCGCTTTTTGAAAA
1 TGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTG--AA
14431967 ACAGAAAT
64 ACAGAAAT
* * *
14431975 TGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAC
1 TGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAC
14432040 AGAAAT
66 AGAAAT
14432046 AAAAATATTA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
71 10 0.16
73 54 0.84
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (71 bp):
TGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAC
AGAAAT
Found at i:14440842 original size:29 final size:29
Alignment explanation
Indices: 14440800--14440858 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
14440790 TAGTCATAAG
14440800 TTCGACAGACATAATTTCATATTCGACGT
1 TTCGACAGACATAATTTCATATTCGACGT
*
14440829 TTCGACAGACATAATTTCATATTCGGCGT
1 TTCGACAGACATAATTTCATATTCGACGT
14440858 T
1 T
14440859 CTTCCTCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (29 bp):
TTCGACAGACATAATTTCATATTCGACGT
Found at i:14445809 original size:13 final size:13
Alignment explanation
Indices: 14445791--14445844 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
14445781 TGCAAGTATG
*
14445791 ATATGCGAGCTCA
1 ATATGCAAGCTCA
* *
14445804 ATATGCGAGCCCA
1 ATATGCAAGCTCA
* *
14445817 ATGTGCAAGCTCG
1 ATATGCAAGCTCA
*
14445830 ATATGTAAGCTCA
1 ATATGCAAGCTCA
14445843 AT
1 AT
14445845 GTGTGAACCA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (13 bp):
ATATGCAAGCTCA
Found at i:14447969 original size:26 final size:26
Alignment explanation
Indices: 14447923--14447975 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14447913 AAATTTTATA
* *
14447923 TTAAATTACCAAAAAATGCTATTTTT
1 TTAAATTACCAAAAAAGGCTAATTTT
* *
14447949 TTAAATTACCAGAATAGGCTAATTTT
1 TTAAATTACCAAAAAAGGCTAATTTT
14447975 T
1 T
14447976 GGAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (26 bp):
TTAAATTACCAAAAAAGGCTAATTTT
Found at i:14448154 original size:18 final size:17
Alignment explanation
Indices: 14448131--14448170 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
14448121 GTTATATTAA
14448131 GGTTTTTAGGGTTGTTAG
1 GGTTTTTAGGG-TGTTAG
**
14448149 GGTTTTTATTGTGTTAG
1 GGTTTTTAGGGTGTTAG
14448166 GGTTT
1 GGTTT
14448171 AGGGTTATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.10, C:0.00, G:0.35, T:0.55
Consensus pattern (17 bp):
GGTTTTTAGGGTGTTAG
Found at i:14451219 original size:32 final size:32
Alignment explanation
Indices: 14451183--14451258 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
14451173 TGTGGTTCTA
* *
14451183 TGAAATGATAACAAA-TATTAGCTTTC-ATTTTG
1 TGAAATGATAACAAATTA-CAAC-TTCAATTTTG
*
14451215 TGAAATGGTAACAAATTACAACTTCAATTTTG
1 TGAAATGATAACAAATTACAACTTCAATTTTG
14451247 TGAAATGATAAC
1 TGAAATGATAAC
14451259 GATAGGAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 3 0.08
32 33 0.87
33 2 0.05
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.36
Consensus pattern (32 bp):
TGAAATGATAACAAATTACAACTTCAATTTTG
Found at i:14451899 original size:35 final size:35
Alignment explanation
Indices: 14451868--14451939 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
14451858 TCAAAATTTC
*
14451868 ATTATTAACTTAACGATAAGATGACAAAAAATCAA
1 ATTATTAACTTAACGACAAGATGACAAAAAATCAA
* *
14451903 ATTATTAACTTTACGACAAGGTGACAAAAAATCAA
1 ATTATTAACTTAACGACAAGATGACAAAAAATCAA
14451938 AT
1 AT
14451940 CTTAAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.26
Consensus pattern (35 bp):
ATTATTAACTTAACGACAAGATGACAAAAAATCAA
Found at i:14455373 original size:48 final size:48
Alignment explanation
Indices: 14455273--14455402 Score: 163
Period size: 48 Copynumber: 2.7 Consensus size: 48
14455263 ACACGATAAG
* * * * ** *
14455273 TACCTATACCATGGCCCTAATCCGAATCAAGGTAACTTATTCCCGGAG
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATTCCCAAAA
*
14455321 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCA-TCTCTAAAA
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATTC-CCAAAA
*
14455369 TACCTATACAATGGCCCGAAGCCAAATCAAGGTA
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTA
14455403 TAACTCGTAC
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 2 0.03
48 70 0.97
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (48 bp):
TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATTCCCAAAA
Found at i:14456777 original size:40 final size:40
Alignment explanation
Indices: 14456723--14456798 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
14456713 TCATCCCCGG
*
14456723 AAATCTTACCAGTGAATAGGTTCGAGTATTGTTTTCCCTA
1 AAATATTACCAGTGAATAGGTTCGAGTATTGTTTTCCCTA
* * *
14456763 AAATATTACTAGTGAATAGGTTCGGGTATTTTTTTC
1 AAATATTACCAGTGAATAGGTTCGAGTATTGTTTTC
14456799 TCATAGCATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (40 bp):
AAATATTACCAGTGAATAGGTTCGAGTATTGTTTTCCCTA
Found at i:14462971 original size:48 final size:48
Alignment explanation
Indices: 14462915--14463047 Score: 176
Period size: 48 Copynumber: 2.8 Consensus size: 48
14462905 CTCACACGAT
* * *
14462915 AAGTACCTATACCATGGCCTGAAGCCAAATCAAGGTAACTTATCCCCG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAAATTATCCCCA
* * * ***
14462963 GAGTACCTATACCATGTCCCGAAGCCAAATTAAGGTAAATTATCTTTA
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAAATTATCCCCA
*
14463011 AAATACCTATACCATGGCCCGAAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTA
14463048 TAACTCACAC
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.23
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAAATTATCCCCA
Found at i:14474859 original size:18 final size:18
Alignment explanation
Indices: 14474838--14474873 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
14474828 TCATATGTTC
14474838 GATAAAAATTGAATCATT
1 GATAAAAATTGAATCATT
14474856 GATAAAAATTGAATCATT
1 GATAAAAATTGAATCATT
14474874 TTATTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (18 bp):
GATAAAAATTGAATCATT
Found at i:14485833 original size:28 final size:28
Alignment explanation
Indices: 14485793--14485855 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 28
14485783 TGATTCTACT
*
14485793 ATTTATCTAACC-TGCAACATGTAAATCA
1 ATTTATCTAACCTTG-AACATGTAAACCA
14485821 ATTTATCTAACCTTGAACATGTAAACCA
1 ATTTATCTAACCTTGAACATGTAAACCA
14485849 ATTTATC
1 ATTTATC
14485856 ATTAATAGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
28 31 0.94
29 2 0.06
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (28 bp):
ATTTATCTAACCTTGAACATGTAAACCA
Found at i:14486136 original size:75 final size:75
Alignment explanation
Indices: 14486032--14486274 Score: 269
Period size: 75 Copynumber: 3.2 Consensus size: 75
14486022 TGCTCCTAGC
* *
14486032 GCTAGTCGAATTAACCGACAGTATTGAATGTGAGCCTAGCTCTATTTGGATAAACCAACGATATT
1 GCTAGTCGGATTAACCGACAATATTGAATGTGAGCCTAGCTCTATTTGGATAAACCAACGATATT
* *
14486097 TTCATCCAGT
66 TACACCCAGT
* * * *
14486107 GCTACTCGGATTAATCGACAATATTGAATGTGAGCCCAGCTATAGTTT-GATAAACCAACGATAT
1 GCTAGTCGGATTAACCGACAATATTGAATGTGAGCCTAGCTCTA-TTTGGATAAACCAACGATAT
*
14486171 TTGCACCCAGT
65 TTACACCCAGT
* * * * * *
14486182 GCTAGTCGG-GTATACCGACGAT-TAT-AATTCTGAGCCTAGCTCTAGTTGGATAAACCAACAAA
1 GCTAGTCGGATTA-ACCGACAATAT-TGAA-TGTGAGCCTAGCTCTATTTGGATAAACCAACGAT
*
14486244 AATTACACCCAGT
63 ATTTACACCCAGT
*
14486257 GCTAGTCGGATAAACCGA
1 GCTAGTCGGATTAACCGA
14486275 TGGGTGTGTG
Statistics
Matches: 140, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
74 7 0.05
75 129 0.92
76 4 0.03
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (75 bp):
GCTAGTCGGATTAACCGACAATATTGAATGTGAGCCTAGCTCTATTTGGATAAACCAACGATATT
TACACCCAGT
Found at i:14489154 original size:22 final size:21
Alignment explanation
Indices: 14489124--14489189 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
14489114 TACAAATTAA
14489124 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
14489146 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
14489167 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
14489186 ATCT
1 ATCT
14489190 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:14489176 original size:19 final size:19
Alignment explanation
Indices: 14489141--14489238 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
14489131 AGATTACAAG
14489141 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
14489162 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14489181 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
14489198 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14489217 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14489236 ATC
1 ATC
14489239 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:14489205 original size:36 final size:37
Alignment explanation
Indices: 14489141--14489238 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
14489131 AGATTACAAG
14489141 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
14489181 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
14489217 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
14489239 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:14491240 original size:13 final size:14
Alignment explanation
Indices: 14491215--14491243 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14491205 ATTTAAACCG
14491215 TTTTAAAACCCCTT
1 TTTTAAAACCCCTT
14491229 TTTTAAAA-CCCTT
1 TTTTAAAACCCCTT
14491242 TT
1 TT
14491244 ATCCCGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTTAAAACCCCTT
Found at i:14491810 original size:21 final size:21
Alignment explanation
Indices: 14491793--14491834 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
14491783 TTCTTTGTAT
*
14491793 TTTGGGCTTGTACTTTTGTTA
1 TTTGGGCTTGTAATTTTGTTA
14491814 TTTGGGCTTGTAATTTTGTTA
1 TTTGGGCTTGTAATTTTGTTA
14491835 ATGGACTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.12, C:0.07, G:0.24, T:0.57
Consensus pattern (21 bp):
TTTGGGCTTGTAATTTTGTTA
Found at i:14492964 original size:16 final size:15
Alignment explanation
Indices: 14492943--14492992 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 15
14492933 ATGTTGAATC
14492943 AACTAAAATTAAAATT
1 AACT-AAATTAAAATT
14492959 AACTAAATATAAAATAT
1 AACTAAAT-TAAAAT-T
14492976 AA-TAAATTAAAAATT
1 AACTAAATT-AAAATT
14492991 AA
1 AA
14492993 AATATATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
15 8 0.26
16 20 0.65
17 3 0.10
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (15 bp):
AACTAAATTAAAATT
Found at i:14492993 original size:22 final size:24
Alignment explanation
Indices: 14492954--14492998 Score: 67
Period size: 22 Copynumber: 1.9 Consensus size: 24
14492944 ACTAAAATTA
14492954 AAATTAACTAAATATAAAATATAAT
1 AAATTAAC-AAATATAAAATATAAT
14492979 AAATTAA-AAAT-TAAAATATA
1 AAATTAACAAATATAAAATATA
14492999 TTTAATCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 9 0.45
23 4 0.20
25 7 0.35
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (24 bp):
AAATTAACAAATATAAAATATAAT
Found at i:14494624 original size:7 final size:7
Alignment explanation
Indices: 14494612--14494658 Score: 78
Period size: 7 Copynumber: 6.9 Consensus size: 7
14494602 TGATATAAGC
14494612 TCTTTTT
1 TCTTTTT
14494619 TCTTTTT
1 TCTTTTT
*
14494626 TCTTCTT
1 TCTTTTT
14494633 TCTTTTT
1 TCTTTTT
14494640 TCTTTTT
1 TCTTTTT
14494647 TCTTTTT
1 TCTTTTT
14494654 T-TTTT
1 TCTTTT
14494659 CACTTTCTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
6 4 0.11
7 34 0.89
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TCTTTTT
Found at i:14505412 original size:26 final size:27
Alignment explanation
Indices: 14505349--14505412 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
14505339 ATATGAATGC
14505349 ATTTTAATTTTAATATTTTGAATTTCA
1 ATTTTAATTTTAATATTTTGAATTTCA
* * * *
14505376 A--TGAACTTTTTATATTTTTAATTTTA
1 ATTTTAA-TTTTAATATTTTGAATTTCA
14505402 ATTTTAATTTT
1 ATTTTAATTTT
14505413 TTATAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
25 3 0.10
26 18 0.62
27 5 0.17
28 3 0.10
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (27 bp):
ATTTTAATTTTAATATTTTGAATTTCA
Found at i:14505978 original size:20 final size:19
Alignment explanation
Indices: 14505929--14505978 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
14505919 TTTATCATAG
**
14505929 AAATAAATATTTTTTAATTA
1 AAAT-AATATTTTTTAAGGA
14505949 AAATAA-ATTTTTTAAAGGA
1 AAATAATATTTTTT-AAGGA
14505968 AAATAATATTT
1 AAATAATATTT
14505979 ATCTTAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 7 0.27
19 11 0.42
20 8 0.31
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (19 bp):
AAATAATATTTTTTAAGGA
Found at i:14506348 original size:43 final size:42
Alignment explanation
Indices: 14506301--14506440 Score: 173
Period size: 43 Copynumber: 3.4 Consensus size: 42
14506291 AAAACTTTGG
* * * *
14506301 ATCATAACTTACATAATTTATATAATACAAAAATATGTATTAT
1 ATCATAACTTACATAACTTACATAATAC-AAAATATATATCAT
*
14506344 ATCATAAATTACATAACTTACATAGAT-----ATATATATCAT
1 ATCATAACTTACATAACTTACATA-ATACAAAATATATATCAT
14506382 ATCATAACTTACATAACTTACATAATACATAAATATATATCAT
1 ATCATAACTTACATAACTTACATAATACA-AAATATATATCAT
14506425 ATCATAACTTACATAA
1 ATCATAACTTACATAA
14506441 AATTTTGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
37 2 0.02
38 32 0.38
43 48 0.57
44 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.36
Consensus pattern (42 bp):
ATCATAACTTACATAACTTACATAATACAAAATATATATCAT
Found at i:14512474 original size:43 final size:43
Alignment explanation
Indices: 14512413--14512494 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
14512403 GTTTTTTCAC
14512413 AAACGCCGCCAAAGAACATAACTTTTAGCAGCGCTTTTACTAA
1 AAACGCCGCCAAAGAACATAACTTTTAGCAGCGCTTTTACTAA
* * * * *
14512456 AAACGTCGCTAAAGAACATGACTTTTAGCGGCGTTTTTA
1 AAACGCCGCCAAAGAACATAACTTTTAGCAGCGCTTTTA
14512495 GGGAAAGAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (43 bp):
AAACGCCGCCAAAGAACATAACTTTTAGCAGCGCTTTTACTAA
Found at i:14512815 original size:61 final size:61
Alignment explanation
Indices: 14512693--14512816 Score: 144
Period size: 61 Copynumber: 2.0 Consensus size: 61
14512683 AATTAGTTAA
* *
14512693 GTGACCAAATTAAAAAATTTGATAGTTAAGTAATCCAAAAAAGAAAAAAGGTAATAGTTGG
1 GTGACCAAATTAAAAAATTTGATAGTCAAGTAATCCAAAAAAGAAAAAAGGCAATAGTTGG
** * ** *
14512754 GTGACCAAATTAAACAAA-TTGATAGTCGGGTGA-CCAAAAGAAGAAAATGGGCAATATTTGG
1 GTGACCAAATTAAA-AAATTTGATAGTCAAGTAATCCAAAA-AAGAAAAAAGGCAATAGTTGG
14512815 GT
1 GT
14512817 AAATTGTGGT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
60 6 0.11
61 44 0.83
62 3 0.06
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (61 bp):
GTGACCAAATTAAAAAATTTGATAGTCAAGTAATCCAAAAAAGAAAAAAGGCAATAGTTGG
Found at i:14520067 original size:50 final size:50
Alignment explanation
Indices: 14520011--14520111 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
14520001 AGTACAAAAT
14520011 TAGTCGAAAGCTCTAGAAGAGCTAATATATTAATATTTTGTAATGGTTAA
1 TAGTCGAAAGCTCTAGAAGAGCTAATATATTAATATTTTGTAATGGTTAA
14520061 TAGTCGAAAGCTCTAGAAGAGCTAATATATTAATATTTTGTAATGGTTAA
1 TAGTCGAAAGCTCTAGAAGAGCTAATATATTAATATTTTGTAATGGTTAA
14520111 T
1 T
14520112 CCATTGGTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.37
Consensus pattern (50 bp):
TAGTCGAAAGCTCTAGAAGAGCTAATATATTAATATTTTGTAATGGTTAA
Found at i:14525387 original size:27 final size:27
Alignment explanation
Indices: 14525357--14525409 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
14525347 GCATCTGATA
14525357 CTGATTCTG-TAATGGGCTTAGGCCCAC
1 CTGATTCTGTTAATGGGC-TAGGCCCAC
14525384 CTGATTCTGTTAATGGGCTAGGCCCA
1 CTGATTCTGTTAATGGGCTAGGCCCA
14525410 ACTGTTACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.19, C:0.25, G:0.26, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTTAATGGGCTAGGCCCAC
Found at i:14536178 original size:6 final size:7
Alignment explanation
Indices: 14536167--14536193 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14536157 AACTAAAACT
14536167 GAAAAAA
1 GAAAAAA
14536174 GAAAAAA
1 GAAAAAA
14536181 GAAAAAA
1 GAAAAAA
14536188 GAAAAA
1 GAAAAA
14536194 CTTATTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:14537542 original size:79 final size:77
Alignment explanation
Indices: 14537440--14537700 Score: 324
Period size: 79 Copynumber: 3.3 Consensus size: 77
14537430 ACAAAGTTGT
* * * * * *
14537440 GTTTCCAATAATATTTTTAGTATTTTGTTGCAAAATTGGTTTTCCAATAGGAATTATAGTAATAG
1 GTTTCCAATAAGAATTTTAGTATTTAGTTACAAAATTGATTTTCCAATAGGAATT-TATTAATAG
14537505 TTGAGAGATTATG
65 TTGAGAGATTATG
* * ** *
14537518 GTTTCCAATTAAGAATTTTAGTATTTGGTTACAAAATTGATTTTCCATTAAAAAATTTATTAGTA
1 GTTTCCAA-TAAGAATTTTAGTATTTAGTTACAAAATTGATTTTCCAAT-AGGAATTTATTAATA
14537583 GTTGAGAGATTATG
64 GTTGAGAGATTATG
* * *
14537597 ATTTCCAATTAAGAATTTTAGTATTTAGTTATAAAATTGATTTCCCAATAGGAATTTTATTAATA
1 GTTTCCAA-TAAGAATTTTAGTATTTAGTTACAAAATTGATTTTCCAATAGGAA-TTTATTAATA
*
14537662 GTTGAGAGATTATT
64 GTTGAGAGATTATG
* *
14537676 GTTTACAATAAGATTTTTAGTATTT
1 GTTTCCAATAAGAATTTTAGTATTT
14537701 GGGTTTTTTA
Statistics
Matches: 158, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
78 27 0.17
79 126 0.80
80 5 0.03
ACGTcount: A:0.34, C:0.06, G:0.15, T:0.44
Consensus pattern (77 bp):
GTTTCCAATAAGAATTTTAGTATTTAGTTACAAAATTGATTTTCCAATAGGAATTTATTAATAGT
TGAGAGATTATG
Found at i:14537614 original size:39 final size:38
Alignment explanation
Indices: 14537480--14537697 Score: 101
Period size: 39 Copynumber: 5.6 Consensus size: 38
14537470 CAAAATTGGT
* * * *
14537480 TTTCCAATAGGAATTATAGTAATAGTTGAGAGATTATGG
1 TTTCCAATAAGAATT-TATTAGTAGTTGAGAGATTATGA
* * **
14537519 TTTCCAATTAAGAA-TT-TTAGTATTTG-GTTACAAAATTGA
1 TTTCCAA-TAAGAATTTATTAGTAGTTGAG--AGATTA-TGA
* *
14537558 TTTTCCATTAAAAAATTTATTAGTAGTTGAGAGATTATGA
1 -TTTCCAAT-AAGAATTTATTAGTAGTTGAGAGATTATGA
* * * * *
14537598 TTTCCAATTAAGAATTTTAGTATTTAGTT-ATAAAAT-TGA
1 TTTCCAA-TAAGAA-TTTATTA-GTAGTTGAGAGATTATGA
* *
14537637 TTTCCCAATAGGAATTTTATTAATAGTTGAGAGATTATTG-
1 TTT-CCAATAAGAA-TTTATTAGTAGTTGAGAGATTA-TGA
*
14537677 TTTACAATAAG-ATTT-TTAGTA
1 TTTCCAATAAGAATTTATTAGTA
14537698 TTTGGGTTTT
Statistics
Matches: 133, Mismatches: 30, Indels: 35
0.67 0.15 0.18
Matches are distributed among these distances:
36 6 0.05
37 10 0.08
38 10 0.08
39 49 0.37
40 36 0.27
41 12 0.09
42 9 0.07
43 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.43
Consensus pattern (38 bp):
TTTCCAATAAGAATTTATTAGTAGTTGAGAGATTATGA
Found at i:14538259 original size:11 final size:12
Alignment explanation
Indices: 14538233--14538271 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
14538223 GAAGATGTTA
*
14538233 AAAAAGAAA-AT
1 AAAAACAAACAT
*
14538244 AAAAACAAACCT
1 AAAAACAAACAT
14538256 AAAAACAAACAT
1 AAAAACAAACAT
14538268 AAAA
1 AAAA
14538272 GCCACATGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.77, C:0.13, G:0.03, T:0.08
Consensus pattern (12 bp):
AAAAACAAACAT
Found at i:14538773 original size:15 final size:16
Alignment explanation
Indices: 14538753--14538783 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14538743 TAACTTGAAA
14538753 ATAATAA-GATAAAAT
1 ATAATAATGATAAAAT
14538768 ATAATAATGATAAAAT
1 ATAATAATGATAAAAT
14538784 GAGATCCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (16 bp):
ATAATAATGATAAAAT
Found at i:14552426 original size:17 final size:16
Alignment explanation
Indices: 14552395--14552448 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
14552385 AATAAAGTAA
*
14552395 AAAATAAATGCAAAAAT
1 AAAATAAAAG-AAAAAT
*
14552412 AAAATAAAAGAAAAAGA
1 AAAATAAAAGAAAAA-T
*
14552429 AAAACAAATAGAAAAAT
1 AAAATAAA-AGAAAAAT
14552446 AAA
1 AAA
14552449 TGGACTCAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
16 5 0.16
17 19 0.61
18 7 0.23
ACGTcount: A:0.78, C:0.04, G:0.07, T:0.11
Consensus pattern (16 bp):
AAAATAAAAGAAAAAT
Found at i:14563732 original size:25 final size:25
Alignment explanation
Indices: 14563698--14563750 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
14563688 GTTCTTACGG
14563698 GTTACATGGTAGCTTGGCTACATAA
1 GTTACATGGTAGCTTGGCTACATAA
14563723 GTTACATGGTAGCTTGGCTACATAA
1 GTTACATGGTAGCTTGGCTACATAA
14563748 GTT
1 GTT
14563751 CCGTAGGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (25 bp):
GTTACATGGTAGCTTGGCTACATAA
Found at i:14570189 original size:10 final size:10
Alignment explanation
Indices: 14570174--14570216 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
14570164 GCTATTAATT
14570174 CATACCAAAA
1 CATACCAAAA
14570184 CATACCAAAA
1 CATACCAAAA
*
14570194 CATGAGCCAAAGT
1 CAT-A-CCAAA-A
14570207 CATACCAAAA
1 CATACCAAAA
14570217 ATAAGATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
10 13 0.46
11 6 0.21
12 6 0.21
13 3 0.11
ACGTcount: A:0.53, C:0.28, G:0.07, T:0.12
Consensus pattern (10 bp):
CATACCAAAA
Found at i:14573527 original size:40 final size:40
Alignment explanation
Indices: 14573472--14573553 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
14573462 CCCACTTCGA
14573472 GACATAGTCAACAGCTATTAATATATAAAGATTTCCAAAT
1 GACATAGTCAACAGCTATTAATATATAAAGATTTCCAAAT
14573512 GACATAGTCAACAGCTATTAATATATAAAGATTTCCAAAT
1 GACATAGTCAACAGCTATTAATATATAAAGATTTCCAAAT
14573552 GA
1 GA
14573554 ACTTTGTAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (40 bp):
GACATAGTCAACAGCTATTAATATATAAAGATTTCCAAAT
Found at i:14578784 original size:21 final size:22
Alignment explanation
Indices: 14578736--14578794 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 22
14578726 CATTGAAGAG
*
14578736 TGTTGTGGCTGCATCT-GATTC
1 TGTTGTGGATGCATCTGGATTC
* *
14578757 TGGTGTGGATGCATCTGGCTT-
1 TGTTGTGGATGCATCTGGATTC
14578778 TGTTGTGGATGCATCTG
1 TGTTGTGGATGCATCTG
14578795 TGTATGCTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 30 0.91
22 3 0.09
ACGTcount: A:0.10, C:0.15, G:0.34, T:0.41
Consensus pattern (22 bp):
TGTTGTGGATGCATCTGGATTC
Found at i:14581950 original size:24 final size:24
Alignment explanation
Indices: 14581917--14581967 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
14581907 AGCTAGAGGG
14581917 GAAGAGAGAAA-AGAGAA-GAAGAAA
1 GAAGAGAGAAACA-A-AATGAAGAAA
*
14581941 GAAGATAGAAACAAAATGAAGAAA
1 GAAGAGAGAAACAAAATGAAGAAA
14581965 GAA
1 GAA
14581968 AGAATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 2 0.08
24 21 0.88
25 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.27, T:0.04
Consensus pattern (24 bp):
GAAGAGAGAAACAAAATGAAGAAA
Found at i:14585517 original size:21 final size:22
Alignment explanation
Indices: 14585493--14585539 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
14585483 ACTAAATACT
*
14585493 TTGTAAAAATTCTTAA-AAAAA
1 TTGTAAAAATTATTAATAAAAA
*
14585514 TTGTAAAAGTTATTAATTAAAAA
1 TTGTAAAAATTATTAA-TAAAAA
14585537 TTG
1 TTG
14585540 CAAATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 14 0.64
23 8 0.36
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.38
Consensus pattern (22 bp):
TTGTAAAAATTATTAATAAAAA
Found at i:14610185 original size:63 final size:63
Alignment explanation
Indices: 14610086--14610206 Score: 199
Period size: 63 Copynumber: 1.9 Consensus size: 63
14610076 ATAAATCTAT
*
14610086 TCAACCAATATTCCATTTAGGCACCTCAATCACAACCAAGCATTCATACTTACATTTGTTCAG
1 TCAACCAATATTCCATTTAGACACCTCAATCACAACCAAGCATTCATACTTACATTTGTTCAG
* *
14610149 TCAACCAATATGT-CATTTCGACACCTCAATCACAACCAAGCATTCATGCTTACATTTG
1 TCAACCAATAT-TCCATTTAGACACCTCAATCACAACCAAGCATTCATACTTACATTTG
14610207 CCTCAAAATG
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 53 0.98
64 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.08, T:0.30
Consensus pattern (63 bp):
TCAACCAATATTCCATTTAGACACCTCAATCACAACCAAGCATTCATACTTACATTTGTTCAG
Found at i:14611714 original size:38 final size:38
Alignment explanation
Indices: 14611647--14611771 Score: 155
Period size: 38 Copynumber: 3.2 Consensus size: 38
14611637 ACAGAATTTT
*
14611647 ATAAGAGCTGATCCAACTGAAACACGCCAAACAGAAGCTC
1 ATAAGAGC-GATCCAACCGAAACACGCCAAA-AGAAGCTC
* *
14611687 ATAAGAGC-ATCCAACCGAAATATGCCAAATAGAAGCTC
1 ATAAGAGCGATCCAACCGAAACACGCCAAA-AGAAGCTC
*
14611725 ATAAGAGCTGGTCC-ACCGAAAACACGCCAAAAGAAGCTC
1 ATAAGAGC-GATCCAACCG-AAACACGCCAAAAGAAGCTC
14611764 ATAAGAGC
1 ATAAGAGC
14611772 TTATCCGCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
38 34 0.45
39 20 0.27
40 21 0.28
ACGTcount: A:0.43, C:0.26, G:0.18, T:0.13
Consensus pattern (38 bp):
ATAAGAGCGATCCAACCGAAACACGCCAAAAGAAGCTC
Found at i:14611760 original size:39 final size:40
Alignment explanation
Indices: 14611647--14611799 Score: 172
Period size: 39 Copynumber: 3.9 Consensus size: 40
14611637 ACAGAATTTT
*
14611647 ATAAGAGCTGATCCAACTGAAACACGCCAAACAGAAGCTC
1 ATAAGAGCTGATCCAACCGAAACACGCCAAACAGAAGCTC
* * *
14611687 ATAAGAGC--ATCCAACCGAAATATGCCAAATAGAAGCTC
1 ATAAGAGCTGATCCAACCGAAACACGCCAAACAGAAGCTC
*
14611725 ATAAGAGCTGGTCC-ACCGAAAACACGCCAAA-AGAAGCTC
1 ATAAGAGCTGATCCAACCG-AAACACGCCAAACAGAAGCTC
* * * *
14611764 ATAAGAGCTTATCC-GCCTGAATCATGCCAAACAGAA
1 ATAAGAGCTGATCCAACC-GAAACACGCCAAACAGAA
14611800 AGTATAAAAT
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
38 34 0.35
39 36 0.38
40 26 0.27
ACGTcount: A:0.42, C:0.26, G:0.18, T:0.14
Consensus pattern (40 bp):
ATAAGAGCTGATCCAACCGAAACACGCCAAACAGAAGCTC
Found at i:14612604 original size:43 final size:43
Alignment explanation
Indices: 14612555--14612694 Score: 158
Period size: 43 Copynumber: 3.3 Consensus size: 43
14612545 TATCCTAGAT
* * * *
14612555 ATGGTCTTACAGGTTATCACATATCGATGCCACTGTCCTAGAC
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* * * *
14612598 AGGGTCTTACACGAAATTGA-ATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAA-TCACATATCGATGCCAATGTCCCAGAC
*
14612641 ATGGTCTTACACGTAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAT-CGATGCCAATGTCCCAGAC
*
14612684 ATGGACTTACA
1 ATGGTCTTACA
14612695 TGCCAATGTC
Statistics
Matches: 80, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
42 3 0.04
43 75 0.94
44 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:14626377 original size:13 final size:13
Alignment explanation
Indices: 14626359--14626383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14626349 GGATGGAAAC
14626359 ACGGCCGTGCGAT
1 ACGGCCGTGCGAT
14626372 ACGGCCGTGCGA
1 ACGGCCGTGCGA
14626384 AAAAAGGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.40, T:0.12
Consensus pattern (13 bp):
ACGGCCGTGCGAT
Found at i:14634731 original size:23 final size:22
Alignment explanation
Indices: 14634697--14634757 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
14634687 ATAATTAGGT
14634697 TTAGAATTAAAAAATTAAGAATAAA
1 TTAGAA-TAAAAAATTAA-AAT-AA
*
14634722 TTA-AATAAAATATTAAAATAA
1 TTAGAATAAAAAATTAAAATAA
*
14634743 TTAGAATTAAAAATT
1 TTAGAATAAAAAATT
14634758 TTAGGTTAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 5 0.16
22 12 0.38
23 10 0.31
24 2 0.06
25 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (22 bp):
TTAGAATAAAAAATTAAAATAA
Found at i:14641661 original size:28 final size:28
Alignment explanation
Indices: 14641575--14641665 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
14641565 GCGACTCTGG
* **
14641575 ACCCC-AAGATGGGTGAAATGACCAAAAT
1 ACCCCTAA-ATGGGTAAAATGACCATTAT
* *
14641603 ACCCCTAAATGGGTAAAATGACTATTTT
1 ACCCCTAAATGGGTAAAATGACCATTAT
* * *
14641631 ACCCCTAATTGGTTAAAATGACCGTTAT
1 ACCCCTAAATGGGTAAAATGACCATTAT
14641659 ACCCCTA
1 ACCCCTA
14641666 GAGGTGGATT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 50 0.96
29 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (28 bp):
ACCCCTAAATGGGTAAAATGACCATTAT
Found at i:14641819 original size:26 final size:27
Alignment explanation
Indices: 14641789--14641840 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
14641779 TGGAGGAAGT
14641789 TACTG-TACTGGTGGCTTTGCCACATA
1 TACTGTTACTGGTGGCTTTGCCACATA
*
14641815 TACTGTTACTGGTGGTTTTGCCACAT
1 TACTGTTACTGGTGGCTTTGCCACAT
14641841 TTATTGATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTTGCCACATA
Found at i:14641851 original size:27 final size:27
Alignment explanation
Indices: 14641789--14641853 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
14641779 TGGAGGAAGT
14641789 TACTG-TACTGGTGGCTTTGCCACATA
1 TACTGATACTGGTGGCTTTGCCACATA
* * *
14641815 TACTGTTACTGGTGGTTTTGCCACATT
1 TACTGATACTGGTGGCTTTGCCACATA
*
14641842 TATTGATACTGG
1 TACTGATACTGG
14641854 CAGCTTTACT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.15
27 29 0.85
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.40
Consensus pattern (27 bp):
TACTGATACTGGTGGCTTTGCCACATA
Found at i:14665058 original size:25 final size:25
Alignment explanation
Indices: 14664978--14665058 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
14664968 TTTACTACAG
* * * *
14664978 TTTCAGTATACACTATCTAGAGTGT
1 TTTCAGAATATACTATCTACAGTAT
* * * *
14665003 TTTCACAGTATACTATCTATAGTAG
1 TTTCAGAATATACTATCTACAGTAT
*
14665028 TTTCAGAATGTACTATCTACAGTAT
1 TTTCAGAATATACTATCTACAGTAT
14665053 TTTCAG
1 TTTCAG
14665059 TTTAAACTTA
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (25 bp):
TTTCAGAATATACTATCTACAGTAT
Found at i:14666465 original size:17 final size:19
Alignment explanation
Indices: 14666437--14666471 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14666427 GGATTACTCG
14666437 TGTGGACCCATAT-GCCCT
1 TGTGGACCCATATAGCCCT
14666455 TGTGG-CCCATATAGCCC
1 TGTGGACCCATATAGCCC
14666472 AAATTAGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.17, C:0.34, G:0.23, T:0.26
Consensus pattern (19 bp):
TGTGGACCCATATAGCCCT
Found at i:14674757 original size:25 final size:24
Alignment explanation
Indices: 14674727--14674802 Score: 67
Period size: 25 Copynumber: 3.4 Consensus size: 24
14674717 TAATTTCTCA
14674727 AAAATTTAATTAATATAAAATATT
1 AAAATTTAATTAATATAAAATATT
* *
14674751 AATAATTCAATAAAT-TGAAAA-ATT
1 AA-AATTTAATTAATAT-AAAATATT
14674775 -AAA-TT-ATTAA-ATAAAAT-TT
1 AAAATTTAATTAATATAAAATATT
14674794 AAAATTTAA
1 AAAATTTAA
14674803 GAGAAAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 16
0.67 0.07 0.26
Matches are distributed among these distances:
19 6 0.15
20 8 0.20
21 3 0.07
22 3 0.07
23 1 0.02
24 6 0.15
25 14 0.34
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (24 bp):
AAAATTTAATTAATATAAAATATT
Found at i:14675678 original size:29 final size:30
Alignment explanation
Indices: 14675619--14675679 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
14675609 GCCTTTTGAA
* * *
14675619 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCAACCAAATTTT
*
14675649 AATATTTATAAAAAGA-GCAACCAAATTTT
1 AATATTTACAAAAAGAGGCAACCAAATTTT
14675678 AA
1 AA
14675680 AAATAGTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCAACCAAATTTT
Found at i:14680674 original size:49 final size:49
Alignment explanation
Indices: 14680594--14680692 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
14680584 AGAAGATAGT
* *
14680594 TATAATCAGTTTGTAATTTGATATTTTCTTGTCTAAATGTTATTGAATG
1 TATAATCAGTTTGTAATTTGATACTTGCTTGTCTAAATGTTATTGAATG
14680643 TATAATCAGTTTGTAATTTGATACTTGCTTGTCTAAATGTTATTGAATG
1 TATAATCAGTTTGTAATTTGATACTTGCTTGTCTAAATGTTATTGAATG
14680692 T
1 T
14680693 GATGAATTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.49
Consensus pattern (49 bp):
TATAATCAGTTTGTAATTTGATACTTGCTTGTCTAAATGTTATTGAATG
Found at i:14682079 original size:44 final size:45
Alignment explanation
Indices: 14682011--14682219 Score: 145
Period size: 46 Copynumber: 4.5 Consensus size: 45
14682001 ATGTCGTTGC
* * * *
14682011 CATGTCCCAGATAGGGTCTTACACTGAC-ACATCTCGTA-GCTGATG
1 CATGTCCCAGACA-TGTCTTACACTGACTACATCACG-AGGCCGATG
* * *
14682056 TATGTCCCAGACATGTCTTACACTGGCTTACGTCACGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGAC-TACATCACGAGGCCGATG
* * * * * * *
14682102 CATGTCCCAGACATGTATTACACT-AGCTCTCGTCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTGA-CT-ACATCACGAGGCCGATG
* * * * * *
14682148 CCATGTCCTAGACATGTTCTTACACTGGCTCTCATAATGTGGCCGATG
1 -CATGTCCCAGACATG-TCTTACACTGACT-ACATCACGAGGCCGATG
14682196 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
14682220 AGCACGTAAA
Statistics
Matches: 129, Mismatches: 27, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
44 12 0.09
45 13 0.10
46 56 0.43
47 28 0.22
48 20 0.16
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGACTACATCACGAGGCCGATG
Found at i:14682113 original size:46 final size:46
Alignment explanation
Indices: 14682052--14682219 Score: 194
Period size: 46 Copynumber: 3.6 Consensus size: 46
14682042 TCTCGTAGCT
*
14682052 GATGTATGTCCCAGACATGTCTTACACTGGCT-TACGTCACGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCACGAGGCC
* * * * *
14682098 GATGCATGTCCCAGACATGTATTACACTAGCTCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCACGAGGCC
* * * * * *
14682144 AATGCCATGTCCTAGACATGTTCTTACACTGGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACATG-TCTTACACTGGCTCTCGTCACGAGGCC
14682192 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
14682220 AGCACGTAAA
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 50 0.50
47 29 0.29
48 21 0.21
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCACGAGGCC
Found at i:14695575 original size:41 final size:40
Alignment explanation
Indices: 14695520--14695613 Score: 152
Period size: 41 Copynumber: 2.3 Consensus size: 40
14695510 AGAGACTGTG
*
14695520 AGAAGAATTATTTATGAATGCTATATAAAACACTTTGGTGA
1 AGAA-AATTATTTATAAATGCTATATAAAACACTTTGGTGA
*
14695561 AGAAAGATTATTTATAAATGCTATTTAAAACACTTTGGTGA
1 AGAAA-ATTATTTATAAATGCTATATAAAACACTTTGGTGA
14695602 AGAAAATTATTT
1 AGAAAATTATTT
14695614 TGTTTGAAGA
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
40 8 0.16
41 42 0.84
ACGTcount: A:0.43, C:0.06, G:0.15, T:0.36
Consensus pattern (40 bp):
AGAAAATTATTTATAAATGCTATATAAAACACTTTGGTGA
Found at i:14701527 original size:70 final size:70
Alignment explanation
Indices: 14701435--14701588 Score: 227
Period size: 70 Copynumber: 2.2 Consensus size: 70
14701425 CATTACAGGA
* * * **
14701435 CCAGTGTCCCAACATTGCATTTTGATTTTGAATTCTTTGGCTTTGAAGTTCGGTGTTGCGGTACC
1 CCAGTGTCGCAACACTGCATTTTGATTTTGAATTCTTTGGCTTTAAAGTTCGGTGTTGCGACACC
14701500 ACATC
66 ACATC
* *
14701505 CCAGTGTCGCGACACTGTATTTTGATTTTGAATTCTTTGGCTTTAAAGTTCGGTGTTGCGACACC
1 CCAGTGTCGCAACACTGCATTTTGATTTTGAATTCTTTGGCTTTAAAGTTCGGTGTTGCGACACC
14701570 ACATC
66 ACATC
* *
14701575 CTAGTGTCGTAACA
1 CCAGTGTCGCAACA
14701589 TTGCCATCAT
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
70 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.37
Consensus pattern (70 bp):
CCAGTGTCGCAACACTGCATTTTGATTTTGAATTCTTTGGCTTTAAAGTTCGGTGTTGCGACACC
ACATC
Found at i:14705690 original size:38 final size:38
Alignment explanation
Indices: 14705639--14705722 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
14705629 ATTTGATGTG
* * * *
14705639 TATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
*
14705677 TATCCGGGATAAATCTCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
*
14705715 TATTCGGG
1 TATCCGGG
14705723 CCTTTGTGCC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
TATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
Found at i:14705768 original size:43 final size:43
Alignment explanation
Indices: 14705715--14705955 Score: 392
Period size: 43 Copynumber: 5.6 Consensus size: 43
14705705 GCTGGTATTA
* *
14705715 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
14705758 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
14705801 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
14705844 TATTCAGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
14705887 TATTTGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
14705930 TATTCGGGACTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
14705956 GTAATACCGG
Statistics
Matches: 181, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 181 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:14706393 original size:43 final size:44
Alignment explanation
Indices: 14706280--14706406 Score: 143
Period size: 45 Copynumber: 2.9 Consensus size: 44
14706270 TTGATTTGAT
* * * * *
14706280 TATTCGAGCCTTTGAGCTTAGCAGACTATAATGCCAGTGAGATAC
1 TATTCGGGCC-TTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
*
14706325 TATTCGGGCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTT-GAGCCTAGCAGGCTATAATGCCGGTGAAAT-AC
*
14706370 TA-TCGGGCCTTGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGA
14706407 TTTGAGAAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 11 0.15
43 14 0.19
44 10 0.14
45 36 0.50
46 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (44 bp):
TATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
Found at i:14706586 original size:39 final size:39
Alignment explanation
Indices: 14706536--14706623 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 39
14706526 AGAATATGTA
*
14706536 ATTATGAATGTGTGAAAATTTCAAGCTTCAATTTGGTTG
1 ATTATGCATGTGTGAAAATTTCAAGCTTCAATTTGGTTG
14706575 ATTATGCATGTGTGAAAATTTCAAGCTTCAATTTGGTTG
1 ATTATGCATGTGTGAAAATTTCAAGCTTCAATTTGGTTG
14706614 ATT-T-CATGTG
1 ATTATGCATGTG
14706624 AATTTCGTCA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
37 6 0.12
38 1 0.02
39 41 0.85
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.42
Consensus pattern (39 bp):
ATTATGCATGTGTGAAAATTTCAAGCTTCAATTTGGTTG
Found at i:14708148 original size:39 final size:40
Alignment explanation
Indices: 14708013--14708234 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
14708003 TTGAATGCTG
* * * * *
14708013 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
14708053 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
14708092 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
14708132 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14708172 TCCGGGTTAAGTCCCGAAGGCA-TTGT--GAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
14708209 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
14708235 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
37 29 0.19
38 3 0.02
39 37 0.24
40 79 0.51
41 8 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14708153 original size:79 final size:78
Alignment explanation
Indices: 14708013--14708234 Score: 245
Period size: 79 Copynumber: 2.8 Consensus size: 78
14708003 TTGAATGCTG
* * * * *
14708013 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
14708077 TGTGCGAGATA-CAAA
63 TGTGCGAGATATCAAA
* * *
14708092 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
* *
14708157 GTGCGAGTTATTAAA
64 GTGCGAGATATCAAA
* * *
14708172 TCCGGGTTAAGTCCCGAAGGCATTGT--GAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
14708235 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
76 3 0.02
77 29 0.24
78 6 0.05
79 52 0.43
80 24 0.20
81 8 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGATATCAAA
Found at i:14708252 original size:77 final size:78
Alignment explanation
Indices: 14708093--14708267 Score: 187
Period size: 77 Copynumber: 2.3 Consensus size: 78
14708083 AGATACAAAT
* * * *
14708093 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGT-CGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
14708158 TGCGAGTTATTAAA
65 AACGAGTGACTAAA
* *
14708172 TCCGGGTTAAGTCCCGAAGG-CATTGT-GAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
*
14708235 AACGAG-GAGCTATA
65 AACGAGTGA-CTAAA
*
14708249 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
14708268 TACGTGATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
76 19 0.23
77 39 0.48
78 5 0.06
79 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
ACGAGTGACTAAA
Found at i:14716107 original size:40 final size:40
Alignment explanation
Indices: 14715938--14716158 Score: 231
Period size: 39 Copynumber: 5.7 Consensus size: 40
14715928 TTGAATGCTG
* * * *
14715938 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
14715978 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
14716017 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
14716056 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14716096 TCCGGGTTAAGTCCCGAAGGCA-TTGT--GAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
14716133 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14716159 AACGAGGAGC
Statistics
Matches: 154, Mismatches: 21, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
37 29 0.19
38 6 0.04
39 62 0.40
40 49 0.32
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14716176 original size:77 final size:78
Alignment explanation
Indices: 14716017--14716191 Score: 187
Period size: 77 Copynumber: 2.3 Consensus size: 78
14716007 GAGATACAAT
* * * *
14716017 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGT-CGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
14716082 TGCGAGTTATTAAA
65 AACGAGTGACTAAA
* *
14716096 TCCGGGTTAAGTCCCGAAGG-CATTGT-GAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
*
14716159 AACGAG-GAGCTATA
65 AACGAGTGA-CTAAA
*
14716173 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
14716192 TACGTGATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
76 19 0.23
77 39 0.48
78 5 0.06
79 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
ACGAGTGACTAAA
Found at i:14720658 original size:39 final size:38
Alignment explanation
Indices: 14720581--14720658 Score: 86
Period size: 39 Copynumber: 2.0 Consensus size: 38
14720571 TTATGAGTAT
* *
14720581 TGTGATATATACTTAAATGTTATATGATTATATGTGTAA
1 TGTGATATATACTTAAAAGTAATATGATTATA-GTGTAA
* *
14720620 TGTGATATATGCTTAAAAGTGAATGTGATTACTA-TGTAA
1 TGTGATATATACTTAAAAGT-AATATGATTA-TAGTGTAA
14720659 ATGAACTAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
39 23 0.70
40 8 0.24
41 2 0.06
ACGTcount: A:0.36, C:0.04, G:0.18, T:0.42
Consensus pattern (38 bp):
TGTGATATATACTTAAAAGTAATATGATTATAGTGTAA
Found at i:14721895 original size:24 final size:24
Alignment explanation
Indices: 14721868--14721917 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
14721858 CATGCATCGA
*
14721868 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
14721892 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
14721916 CA
1 CA
14721918 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:14721990 original size:94 final size:94
Alignment explanation
Indices: 14721873--14722248 Score: 671
Period size: 94 Copynumber: 4.0 Consensus size: 94
14721863 ATCGACATTC
* * *
14721873 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTACACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
14721938 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
* *
14721967 AAATCTATACACAAAGTGACATTTAATTCTGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTACACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
14722032 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
14722061 AAATCTACACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTACACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
14722126 GGCAATTTACTTAATTCAAATAGCATATT
66 GGCAATTTACTTAATTCAAATAGCATATA
* *
14722155 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTACACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
14722220 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
14722249 CGGTCACATT
Statistics
Matches: 270, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 270 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (94 bp):
AAATCTACACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:14729721 original size:24 final size:26
Alignment explanation
Indices: 14729694--14729756 Score: 80
Period size: 24 Copynumber: 2.6 Consensus size: 26
14729684 TCAACCAAAT
* *
14729694 TCGCACACATAGTGCT-A-ATTAAGC
1 TCGCACACATAGTGCTCATACTAAAC
14729718 TCGCACACATAGTG-TCATACTAAAC
1 TCGCACACATAGTGCTCATACTAAAC
14729743 -CGCACACATAGTGC
1 TCGCACACATAGTGC
14729757 CTGAAATTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 1 0.03
24 28 0.82
25 5 0.15
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (26 bp):
TCGCACACATAGTGCTCATACTAAAC
Found at i:14729808 original size:24 final size:24
Alignment explanation
Indices: 14729781--14729830 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
14729771 CATGCATCGA
14729781 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCTGCACACATAGTGC
* *
14729805 CATTTAATTCTGCACACATAGTGC
1 CATTCAAATCTGCACACATAGTGC
14729829 CA
1 CA
14729831 AAATGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (24 bp):
CATTCAAATCTGCACACATAGTGC
Found at i:14729912 original size:24 final size:24
Alignment explanation
Indices: 14729885--14729947 Score: 108
Period size: 24 Copynumber: 2.6 Consensus size: 24
14729875 GCATATAAAA
14729885 TCTGCACACAAAGTGACATTTAAT
1 TCTGCACACAAAGTGACATTTAAT
14729909 TCTGCACACAAAGTGACATTTAAT
1 TCTGCACACAAAGTGACATTTAAT
* *
14729933 TCCGCACACATAGTG
1 TCTGCACACAAAGTG
14729948 CCAATGTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (24 bp):
TCTGCACACAAAGTGACATTTAAT
Found at i:14729991 original size:118 final size:119
Alignment explanation
Indices: 14729779--14730041 Score: 456
Period size: 118 Copynumber: 2.2 Consensus size: 119
14729769 CTCATGCATC
* * * *
14729779 GACATTCAAATCTGCACACATAGTGCCATTTAATTCTGCACACATAGTGCCAAAATGTTAACTCA
1 GACATTTAATTCTGCACACATAGTGACATTTAATTCCGCACACATAGTGCC-AAATGTTAACTCA
14729844 TTATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAATCTGCACACAAAGT
65 TTATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAATCTGCACACAAAGT
*
14729899 GACATTTAATTCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCC-AATGTTAACTCAT
1 GACATTTAATTCTGCACACATAGTGACATTTAATTCCGCACACATAGTGCCAAATGTTAACTCAT
14729963 TATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAATCTGCACACAAAGT
66 TATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAATCTGCACACAAAGT
*
14730017 GACATTTAATTCCGCACACATAGTG
1 GACATTTAATTCTGCACACATAGTG
14730042 CCAATGTTAA
Statistics
Matches: 136, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
118 90 0.66
120 46 0.34
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.29
Consensus pattern (119 bp):
GACATTTAATTCTGCACACATAGTGACATTTAATTCCGCACACATAGTGCCAAATGTTAACTCAT
TATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAATCTGCACACAAAGT
Found at i:14730070 original size:94 final size:94
Alignment explanation
Indices: 14729909--14730187 Score: 522
Period size: 94 Copynumber: 3.0 Consensus size: 94
14729899 GACATTTAAT
14729909 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
1 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
14729974 AATTTACTTAATTCAAATAGCATATAAAA
66 AATTTACTTAATTCAAATAGCATATAAAA
14730003 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
1 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
14730068 AATTTACTTAATTCAAATAGCATATAAAA
66 AATTTACTTAATTCAAATAGCATATAAAA
* * *
14730097 TCTGCACACAAAGTGACATTTAATTTCGCACACATAGTGCCAATGTTAACTCATTATAATATGTC
1 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
*
14730162 AACTTACTTAATTCAAATAGCATATA
66 AATTTACTTAATTCAAATAGCATATA
14730188 CGGTCACATT
Statistics
Matches: 181, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 181 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (94 bp):
TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
AATTTACTTAATTCAAATAGCATATAAAA
Found at i:14734948 original size:19 final size:19
Alignment explanation
Indices: 14734924--14734988 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
14734914 AGTTACAAAA
14734924 AAAATTCAAAATATTTTTT
1 AAAATTCAAAATATTTTTT
* *
14734943 AAAATTCAAAATATTTATA
1 AAAATTCAAAATATTTTTT
14734962 AAAATTTCAAAATTTATATTTTT
1 AAAA-TTCAAAA--TAT-TTTTT
14734985 AAAA
1 AAAA
14734989 AAAATTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
19 21 0.55
20 7 0.18
22 3 0.08
23 7 0.18
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAATTCAAAATATTTTTT
Found at i:14735012 original size:65 final size:66
Alignment explanation
Indices: 14734920--14735042 Score: 146
Period size: 65 Copynumber: 1.9 Consensus size: 66
14734910 CAAAAGTTAC
* ** * *
14734920 AAAAAAAATTCAAAATATTTTTTAAAAT-TCAA-AATATTTATAA-AAATTTCAAAATTTATATT
1 AAAAAAAATTCAAAAAATTTTGAAAAATCTAAAGAATATATA-AAGAAATTT-AAAATTTATATT
14734982 TTT
64 TTT
14734985 AAAAAAAATT-AAAAAATTTTAGAAAAATCTAAAGAATATATAAAGAAATTTAAAATTT
1 AAAAAAAATTCAAAAAATTTT-GAAAAATCTAAAGAATATATAAAGAAATTTAAAATTT
14735043 TGAAAATTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
64 9 0.18
65 15 0.31
66 12 0.24
67 13 0.27
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (66 bp):
AAAAAAAATTCAAAAAATTTTGAAAAATCTAAAGAATATATAAAGAAATTTAAAATTTATATTTT
T
Found at i:14739009 original size:21 final size:19
Alignment explanation
Indices: 14738976--14739014 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
14738966 TTTCTTTATT
*
14738976 TTTTTTTCTTTCTTCCTTG
1 TTTTTTTCTTTCTCCCTTG
14738995 TTTTTTTCATCTTCTCCCTT
1 TTTTTTTC-T-TTCTCCCTT
14739015 CTAACCTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 1 0.06
21 8 0.47
ACGTcount: A:0.03, C:0.26, G:0.03, T:0.69
Consensus pattern (19 bp):
TTTTTTTCTTTCTCCCTTG
Found at i:14740036 original size:18 final size:18
Alignment explanation
Indices: 14740010--14740044 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14740000 TTCTAGATAA
*
14740010 GTTTGGAAACTATAAAAG
1 GTTTAGAAACTATAAAAG
*
14740028 GTTTAGAAATTATAAAA
1 GTTTAGAAACTATAAAA
14740045 AAAATATTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.03, G:0.17, T:0.31
Consensus pattern (18 bp):
GTTTAGAAACTATAAAAG
Found at i:14742801 original size:23 final size:24
Alignment explanation
Indices: 14742769--14742819 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
14742759 ACTCATTTAG
14742769 AAAATCT-AAAAATTATAAATATAA
1 AAAATCTAAAAAATTA-AAATATAA
14742793 AAAAT-TAAAAAATTAAAATATAA
1 AAAATCTAAAAAATTAAAATATAA
14742816 AAAA
1 AAAA
14742820 GTTGTAACGC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 13 0.50
24 13 0.50
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (24 bp):
AAAATCTAAAAAATTAAAATATAA
Found at i:14751455 original size:13 final size:14
Alignment explanation
Indices: 14751437--14751466 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14751427 CTGTGTATTC
14751437 TTTA-TTTTATTTT
1 TTTATTTTTATTTT
14751450 TTTATTTTTATTTT
1 TTTATTTTTATTTT
14751464 TTT
1 TTT
14751467 CACAACTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTATTTTTATTTT
Found at i:14751518 original size:36 final size:34
Alignment explanation
Indices: 14751435--14751519 Score: 82
Period size: 36 Copynumber: 2.4 Consensus size: 34
14751425 ATCTGTGTAT
* *
14751435 TCTTTATTTTATTTTTTTATTTTTATTTTTTTCA
1 TCTTTTTTTTATTTTTTTATTTTTATTTTCTTCA
** **
14751469 -CAACTTTCATATTTTCTTTATTCTTTATTTTCTTCA
1 TC-TTTTTTTTATTTT-TTTATT-TTTATTTTCTTCA
14751505 TCTTTTTTTTATTTT
1 TCTTTTTTTTATTTT
14751520 ATAACACGTT
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
33 1 0.03
34 8 0.22
35 6 0.16
36 21 0.57
37 1 0.03
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (34 bp):
TCTTTTTTTTATTTTTTTATTTTTATTTTCTTCA
Found at i:14769824 original size:5 final size:5
Alignment explanation
Indices: 14769814--14769872 Score: 50
Period size: 5 Copynumber: 11.8 Consensus size: 5
14769804 AGGAATCAAA
* * * *
14769814 AAAAT AAAAT AAAAT --AAT AAAAG AAAAG AAAAT ATAAAT TAAAG AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A-AAAT AAAAT AAAAT
14769863 ATAAAT AAAA
1 A-AAAT AAAA
14769873 AACTTAAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
3 3 0.07
5 32 0.73
6 9 0.20
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:14769859 original size:16 final size:16
Alignment explanation
Indices: 14769838--14769885 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
14769828 TAATAAAAGA
14769838 AAAGAAAATATAAATT
1 AAAGAAAATATAAATT
14769854 AAAGAAAATATAAA-T
1 AAAGAAAATATAAATT
*
14769869 AAA-AAACT-TAAATT
1 AAAGAAAATATAAATT
14769883 AAA
1 AAA
14769886 AGTATTAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 4 0.13
14 8 0.27
15 4 0.13
16 14 0.47
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (16 bp):
AAAGAAAATATAAATT
Found at i:14781289 original size:8 final size:9
Alignment explanation
Indices: 14781265--14781291 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
14781255 AACCCATTTA
14781265 ATATTTTTT
1 ATATTTTTT
14781274 ATATTTTTT
1 ATATTTTTT
14781283 ATATTTTTT
1 ATATTTTTT
14781292 GTTTTTACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
ATATTTTTT
Found at i:14782002 original size:18 final size:19
Alignment explanation
Indices: 14781979--14782017 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14781969 ACAAAAGCTG
14781979 AAAATTAT-ATTAATGAAA
1 AAAATTATCATTAATGAAA
* *
14781997 AAAATTCTCCTTAATGAAA
1 AAAATTATCATTAATGAAA
14782016 AA
1 AA
14782018 TGAAGAAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.31
Consensus pattern (19 bp):
AAAATTATCATTAATGAAA
Found at i:14789374 original size:20 final size:20
Alignment explanation
Indices: 14789349--14789386 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14789339 TTTTATGAAC
14789349 GATTTTCCATTAAAATTGAT
1 GATTTTCCATTAAAATTGAT
*
14789369 GATTTTCCATTAGAATTG
1 GATTTTCCATTAAAATTG
14789387 GTGAATTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.45
Consensus pattern (20 bp):
GATTTTCCATTAAAATTGAT
Found at i:14793291 original size:13 final size:14
Alignment explanation
Indices: 14793273--14793301 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14793263 AATTGTTTTA
14793273 AAGGTTAA-TTAGT
1 AAGGTTAATTTAGT
14793286 AAGGTTAATTTAGT
1 AAGGTTAATTTAGT
14793300 AA
1 AA
14793302 ATTAGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (14 bp):
AAGGTTAATTTAGT
Found at i:14794144 original size:40 final size:40
Alignment explanation
Indices: 14794099--14794271 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
14794089 CGGTTATTTG
*
14794099 TGGCACTTAGTGTGTGATACGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATACGACATAGCTTCGGCTATATA
* * *
14794139 TGGCACTTACTGTGCGATAAGATATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATACGACATAGCTTCGGCTATATA
* * *
14794179 TGGCACTTAGTGTGCGATTCAACATAGCTTTGGCTATATA
1 TGGCACTTAGTGTGCGATACGACATAGCTTCGGCTATATA
* * * *
14794219 TGGAACTTAGTGTGCGACT-TGAGATAGCTTCGGCTA-GTA
1 TGGCACTTAGTGTGCGA-TACGACATAGCTTCGGCTATATA
* *
14794258 CGACACTTAGTGTG
1 TGGCACTTAGTGTG
14794272 TGAGATATCG
Statistics
Matches: 113, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 13 0.12
40 99 0.88
41 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATACGACATAGCTTCGGCTATATA
Found at i:14794191 original size:80 final size:79
Alignment explanation
Indices: 14794099--14794274 Score: 228
Period size: 80 Copynumber: 2.2 Consensus size: 79
14794089 CGGTTATTTG
* * *
14794099 TGGCACTTAGTGTGTGATACGACATAGCTTCGGCTATATATGGCACTTACTGTGCGA-TAAGATA
1 TGGCACTTAGTGTGTGATACAACATAGCTTCGGCTATATATGGAACTTACTGTGCGACT-AGAGA
14794163 TAGCTTCGGCTATATA
65 TAGCTTCGGCTA-ATA
* * * * *
14794179 TGGCACTTAGTGTGCGATTCAACATAGCTTTGGCTATATATGGAACTTAGTGTGCGACTTGAGAT
1 TGGCACTTAGTGTGTGATACAACATAGCTTCGGCTATATATGGAACTTACTGTGCGACTAGAGAT
*
14794244 AGCTTCGGCTAGTA
66 AGCTTCGGCTAATA
* *
14794258 CGACACTTAGTGTGTGA
1 TGGCACTTAGTGTGTGA
14794275 GATATCGAGT
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 16 0.19
80 66 0.80
81 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (79 bp):
TGGCACTTAGTGTGTGATACAACATAGCTTCGGCTATATATGGAACTTACTGTGCGACTAGAGAT
AGCTTCGGCTAATA
Found at i:14794312 original size:28 final size:28
Alignment explanation
Indices: 14794261--14794314 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
14794251 GCTAGTACGA
** *
14794261 CACTTAGTGTGTGAGATATCGAGTATGG
1 CACTTAGTGTGCAAGACATCGAGTATGG
*
14794289 CACTTAGTGTGCAAGACATTGAGTAT
1 CACTTAGTGTGCAAGACATCGAGTAT
14794315 TCAACGACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCAAGACATCGAGTATGG
Found at i:14796054 original size:25 final size:25
Alignment explanation
Indices: 14796019--14796066 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
14796009 CATGACTTTG
*
14796019 TATGTTACCTTTGTGGCATATTCCA
1 TATGTTACCTTTATGGCATATTCCA
*
14796044 TATGTTGCCTTTATGGCATATTC
1 TATGTTACCTTTATGGCATATTC
14796067 TGTTTGGCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.46
Consensus pattern (25 bp):
TATGTTACCTTTATGGCATATTCCA
Found at i:14805864 original size:26 final size:26
Alignment explanation
Indices: 14805833--14805914 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
14805823 TGAAATGCCC
14805833 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
14805859 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
14805885 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
14805911 ATCA
1 ATCA
14805915 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:14811182 original size:22 final size:22
Alignment explanation
Indices: 14811157--14811222 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
14811147 AAACTATCGA
14811157 TTTTGTATTATTAGAAAAACCC
1 TTTTGTATTATTAGAAAAACCC
* * *
14811179 TTTTG----CTTAG-AAATCCA
1 TTTTGTATTATTAGAAAAACCC
14811196 TTTTGTATTATTAGAAAAACCC
1 TTTTGTATTATTAGAAAAACCC
*
14811218 ATTTG
1 TTTTG
14811223 CGTAAAAACT
Statistics
Matches: 32, Mismatches: 7, Indels: 10
0.65 0.14 0.20
Matches are distributed among these distances:
17 10 0.31
18 4 0.12
21 4 0.12
22 14 0.44
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (22 bp):
TTTTGTATTATTAGAAAAACCC
Found at i:14811340 original size:17 final size:17
Alignment explanation
Indices: 14811318--14811352 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14811308 CAGACTAGAG
14811318 AGTCCCAAAAATTACAA
1 AGTCCCAAAAATTACAA
14811335 AGTCCCAAAAATTACAA
1 AGTCCCAAAAATTACAA
14811352 A
1 A
14811353 CTTTCAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.23, G:0.06, T:0.17
Consensus pattern (17 bp):
AGTCCCAAAAATTACAA
Found at i:14813077 original size:40 final size:40
Alignment explanation
Indices: 14813021--14813124 Score: 145
Period size: 40 Copynumber: 2.6 Consensus size: 40
14813011 GTCAGAAATG
* *
14813021 TGGACAAGCCATCAGTATTGTAGACAAGATACCAGTAATC
1 TGGACAAGCCACCAGTATTGCAGACAAGATACCAGTAATC
* * *
14813061 TGGACAAGCCACCAGTATTGCAGACAAGTTACTAGTAATG
1 TGGACAAGCCACCAGTATTGCAGACAAGATACCAGTAATC
* *
14813101 TGGACAAGCCACCAATAATGCAGA
1 TGGACAAGCCACCAGTATTGCAGA
14813125 TAAACTACTA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (40 bp):
TGGACAAGCCACCAGTATTGCAGACAAGATACCAGTAATC
Found at i:14813119 original size:20 final size:20
Alignment explanation
Indices: 14813017--14813120 Score: 91
Period size: 20 Copynumber: 5.2 Consensus size: 20
14813007 AACTGTCAGA
*
14813017 AATGTGGACAAGCCATCAGT
1 AATGTGGACAAGCCACCAGT
* * **
14813037 ATTGTAGACAAGATACCAGT
1 AATGTGGACAAGCCACCAGT
*
14813057 AATCTGGACAAGCCACCAGT
1 AATGTGGACAAGCCACCAGT
* ** ** *
14813077 ATTGCAGACAAGTTACTAGT
1 AATGTGGACAAGCCACCAGT
*
14813097 AATGTGGACAAGCCACCAAT
1 AATGTGGACAAGCCACCAGT
14813117 AATG
1 AATG
14813121 CAGATAAACT
Statistics
Matches: 60, Mismatches: 24, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (20 bp):
AATGTGGACAAGCCACCAGT
Found at i:14813134 original size:40 final size:40
Alignment explanation
Indices: 14813017--14813137 Score: 136
Period size: 40 Copynumber: 3.0 Consensus size: 40
14813007 AACTGTCAGA
* * * *
14813017 AATGTGGACAAGCCATCAGTATTGTAGACAAGA-TACCAGT
1 AATGTGGACAAGCCACCAGTAATGCAGACAA-ACTACTAGT
* * **
14813057 AATCTGGACAAGCCACCAGTATTGCAGACAAGTTACTAGT
1 AATGTGGACAAGCCACCAGTAATGCAGACAAACTACTAGT
* *
14813097 AATGTGGACAAGCCACCAATAATGCAGATAAACTACTAGT
1 AATGTGGACAAGCCACCAGTAATGCAGACAAACTACTAGT
14813137 A
1 A
14813138 TTGCAGACAA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (40 bp):
AATGTGGACAAGCCACCAGTAATGCAGACAAACTACTAGT
Found at i:14813144 original size:20 final size:20
Alignment explanation
Indices: 14813119--14813159 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14813109 CCACCAATAA
*
14813119 TGCAGATAAACTACTAGTAT
1 TGCAGACAAACTACTAGTAT
* *
14813139 TGCAGACAACCTGCTAGTAT
1 TGCAGACAAACTACTAGTAT
14813159 T
1 T
14813160 CTAGACAAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (20 bp):
TGCAGACAAACTACTAGTAT
Found at i:14813147 original size:40 final size:40
Alignment explanation
Indices: 14813063--14813147 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
14813053 CAGTAATCTG
* * ** **
14813063 GACAAGCCACCAGTATTGCAGACAAGTTACTAGTAATGTG
1 GACAAGCCACCAATAATGCAGACAAACTACTAGTAATGCA
* *
14813103 GACAAGCCACCAATAATGCAGATAAACTACTAGTATTGCA
1 GACAAGCCACCAATAATGCAGACAAACTACTAGTAATGCA
14813143 GACAA
1 GACAA
14813148 CCTGCTAGTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (40 bp):
GACAAGCCACCAATAATGCAGACAAACTACTAGTAATGCA
Found at i:14815082 original size:17 final size:17
Alignment explanation
Indices: 14815062--14815098 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
14815052 TATCAAAAGT
14815062 ATAAACCAAAGATTTCA
1 ATAAACCAAAGATTTCA
*
14815079 ATAAACCAAAGATTTTA
1 ATAAACCAAAGATTTCA
14815096 ATA
1 ATA
14815099 TCATCCCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (17 bp):
ATAAACCAAAGATTTCA
Done.