Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 45 of 343
Found at i:14815670 original size:93 final size:94
Alignment explanation
Indices: 14815515--14815729 Score: 315
Period size: 93 Copynumber: 2.3 Consensus size: 94
14815505 ATCAATGTCA
* * *
14815515 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCACAACATCGCTGATGCCATGTTCCAAACT
1 ATGCCATGTCCCAGACATGGTCTT--ACTGGCTCTCACAACATCGCCGATGCCATGTTCCAAACA
*
14815580 TAGTCTTACACTGGCTCTCATATCGTGGCCG
64 TAGTCCTACACTGGCTCTCATATCGTGGCCG
* * *
14815611 ATGCCATGTCCCAGACTTGGTCTT-TTGGCTCTCACAACATCGCCGATGCCATGTTCCAAACATG
1 ATGCCATGTCCCAGACATGGTCTTACTGGCTCTCACAACATCGCCGATGCCATGTTCCAAACATA
*
14815675 GTCCTACACTGGCTCTCATATTGTGGCCG
66 GTCCTACACTGGCTCTCATATCGTGGCCG
* *
14815704 ATGTCATGTCCCAAACATGGTCTTAC
1 ATGCCATGTCCCAGACATGGTCTTAC
14815730 ACTGGCACAC
Statistics
Matches: 106, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
93 84 0.79
96 22 0.21
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.29
Consensus pattern (94 bp):
ATGCCATGTCCCAGACATGGTCTTACTGGCTCTCACAACATCGCCGATGCCATGTTCCAAACATA
GTCCTACACTGGCTCTCATATCGTGGCCG
Found at i:14815743 original size:48 final size:48
Alignment explanation
Indices: 14815320--14815735 Score: 340
Period size: 48 Copynumber: 8.7 Consensus size: 48
14815310 GGGTGAATTA
* * * *** *
14815320 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACACGTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGG
* * * * ** *
14815368 CCGATGTCATGTCCCAGACATGGTCTTACACTAGTTCACATCCCAAT-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAC-GTGG
* * *
14815416 CCGATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCATAATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGG
* * * * * *
14815464 CTGATTCCATGTCCCAGACATGGTCTTACACTAG-TGCACATATCAAT-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CTCATAAC-GTGG
* * * * * *
14815512 TCAATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCACAACATCG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGG
* * * * * *
14815560 CTGATGCCATGTTCCAAACTTAGTCTTACACTGGCTCTCATATCGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGG
* * * * *
14815608 CCGATGCCATGTCCCAGACTTGGTCTT---TTGGCTCTCACAACATCG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGG
* * * **
14815653 CCGATGCCATGTTCCAAACATGGTCCTACACTGGCTCTCATATTGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGG
* *
14815701 CCGATGTCATGTCCCAAACATGGTCTTACACTGGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC
14815736 ACACATATCA
Statistics
Matches: 291, Mismatches: 68, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
45 36 0.12
47 4 0.01
48 249 0.86
49 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGG
Found at i:14815977 original size:101 final size:101
Alignment explanation
Indices: 14815802--14815999 Score: 396
Period size: 101 Copynumber: 2.0 Consensus size: 101
14815792 GGGAATTTAT
14815802 CGCATTAATTTCATCATACATTATTCATAATCATATTCAACCATATTATGCAAAATAAATCATTC
1 CGCATTAATTTCATCATACATTATTCATAATCATATTCAACCATATTATGCAAAATAAATCATTC
14815867 AACACATAATAACGATAAAGCTACCTTACTTACGTC
66 AACACATAATAACGATAAAGCTACCTTACTTACGTC
14815903 CGCATTAATTTCATCATACATTATTCATAATCATATTCAACCATATTATGCAAAATAAATCATTC
1 CGCATTAATTTCATCATACATTATTCATAATCATATTCAACCATATTATGCAAAATAAATCATTC
14815968 AACACATAATAACGATAAAGCTACCTTACTTA
66 AACACATAATAACGATAAAGCTACCTTACTTA
14816000 TGTACAACTT
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 97 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (101 bp):
CGCATTAATTTCATCATACATTATTCATAATCATATTCAACCATATTATGCAAAATAAATCATTC
AACACATAATAACGATAAAGCTACCTTACTTACGTC
Found at i:14818722 original size:17 final size:17
Alignment explanation
Indices: 14818696--14818732 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
14818686 AAAATAGGTT
*
14818696 AAATAGATAAAAAGAAA
1 AAATAAATAAAAAGAAA
*
14818713 AAATAAATAAAAATAAA
1 AAATAAATAAAAAGAAA
14818730 AAA
1 AAA
14818733 AATGAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (17 bp):
AAATAAATAAAAAGAAA
Found at i:14818726 original size:10 final size:10
Alignment explanation
Indices: 14818711--14818743 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
14818701 GATAAAAAGA
14818711 AAAAATAAAT
1 AAAAATAAAT
14818721 AAAAATAAA-
1 AAAAATAAAT
14818730 AAAAATGAAAT
1 AAAAAT-AAAT
14818741 AAA
1 AAA
14818744 TCAATAAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 6 0.29
10 12 0.57
11 3 0.14
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:14820166 original size:18 final size:19
Alignment explanation
Indices: 14820143--14820180 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
14820133 TGATTTTCTC
*
14820143 AAAATGGAAATG-GAAATG
1 AAAATGAAAATGAGAAATG
14820161 AAAATGAAAATGAGAAATG
1 AAAATGAAAATGAGAAATG
14820180 A
1 A
14820181 TTCATTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.16
Consensus pattern (19 bp):
AAAATGAAAATGAGAAATG
Found at i:14821608 original size:21 final size:21
Alignment explanation
Indices: 14821584--14821636 Score: 90
Period size: 21 Copynumber: 2.5 Consensus size: 21
14821574 GTTGCTATAA
14821584 TGACAG-TCGGTTAGAGTCACC
1 TGACAGCT-GGTTAGAGTCACC
14821605 TGACAGCTGGTTAGAGTCACC
1 TGACAGCTGGTTAGAGTCACC
14821626 TGACAGCTGGT
1 TGACAGCTGGT
14821637 AAACATAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 30 0.97
22 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (21 bp):
TGACAGCTGGTTAGAGTCACC
Found at i:14823414 original size:17 final size:20
Alignment explanation
Indices: 14823373--14823415 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
14823363 TAATTAAAGT
14823373 ATGATTTTTGATCGTTTTTG
1 ATGATTTTTGATCGTTTTTG
14823393 ATGATTTTT-A-CGTTTTTG
1 ATGATTTTTGATCGTTTTTG
14823411 -TGATT
1 ATGATT
14823416 GTTGCTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 8 0.35
19 1 0.04
20 9 0.39
ACGTcount: A:0.16, C:0.05, G:0.19, T:0.60
Consensus pattern (20 bp):
ATGATTTTTGATCGTTTTTG
Found at i:14824285 original size:43 final size:43
Alignment explanation
Indices: 14824117--14824286 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 43
14824107 TAGGATTCCT
* * * *
14824117 ATATGTGATTTCGTGTAAGACCACGTTTGGGACTTTGGCATCG
1 ATATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCATCG
* *
14824160 AT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATTGGCATCG
1 ATATT-TGA-TTACGTGTAAGACCACGTCTGGGACATTGGCATCG
* * * * *
14824204 -TATATGATTTCGTGTAAGACC-CTGTCTAGGATAATGGCATCG
1 ATATTTGATTACGTGTAAGACCAC-GTCTGGGACATTGGCATCG
* *
14824246 ATATTTGATAACATGTAAGACCACGTCTGGGACATTGGCAT
1 ATATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
14824287 TGTATGAGTT
Statistics
Matches: 101, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
42 30 0.30
43 38 0.38
44 33 0.33
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
ATATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCATCG
Found at i:14825052 original size:12 final size:12
Alignment explanation
Indices: 14825031--14825059 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14825021 TTGGTATGCT
14825031 TTGA-TATGAAA
1 TTGATTATGAAA
14825042 TTGATTATGAAA
1 TTGATTATGAAA
14825054 TTGATT
1 TTGATT
14825060 GGTGATATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (12 bp):
TTGATTATGAAA
Found at i:14827639 original size:31 final size:30
Alignment explanation
Indices: 14827560--14827639 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 30
14827550 AGCTCCGGCT
*
14827560 ATCAAACTATGAAAAGGGATGGTGACGACC
1 ATCAAAATATGAAAAGGGATGGTGACGACC
* * *
14827590 ATCAACA-ATGGAAAGGGATGGTGATGACC
1 ATCAAAATATGAAAAGGGATGGTGACGACC
14827619 ATCAAAATTATGAAAAGGGAT
1 ATCAAAA-TATGAAAAGGGAT
14827640 AACTTCAACT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 26 0.62
30 5 0.12
31 11 0.26
ACGTcount: A:0.42, C:0.12, G:0.26, T:0.19
Consensus pattern (30 bp):
ATCAAAATATGAAAAGGGATGGTGACGACC
Found at i:14827656 original size:120 final size:120
Alignment explanation
Indices: 14827481--14827699 Score: 294
Period size: 120 Copynumber: 1.8 Consensus size: 120
14827471 CGAGCTATGA
* * * * **
14827481 AAAGGGATGGTGACGACTATAAAAAATATGAAAGGGGGTAGCTTCGGCTACCGAATCATGAAAAA
1 AAAGGGATGGTGACGACCATAAAAAATATGAAAAGGGATAACTTCAACTACCGAATCATGAAAAA
14827546 GGATAGCTCCGGCTATCAAACTATGAAAAGGGATGGTGACGACCATCAACAATGG
66 GGATAGCTCCGGCTATCAAACTATGAAAAGGGATGGTGACGACCATCAACAATGG
* * * * * *
14827601 AAAGGGATGGTGATGACCATCAAAATTATGAAAAGGGATAACTTCAACTATCGAATTATGAAAAG
1 AAAGGGATGGTGACGACCATAAAAAATATGAAAAGGGATAACTTCAACTACCGAATCATGAAAAA
* * * *
14827666 GGATAGCTTCGGCTATCGAATTATGAAAATGGAT
66 GGATAGCTCCGGCTATCAAACTATGAAAAGGGAT
14827700 AGCTTTGGCT
Statistics
Matches: 83, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
120 83 1.00
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (120 bp):
AAAGGGATGGTGACGACCATAAAAAATATGAAAAGGGATAACTTCAACTACCGAATCATGAAAAA
GGATAGCTCCGGCTATCAAACTATGAAAAGGGATGGTGACGACCATCAACAATGG
Found at i:14827660 original size:30 final size:30
Alignment explanation
Indices: 14827624--14827759 Score: 191
Period size: 30 Copynumber: 4.5 Consensus size: 30
14827614 TGACCATCAA
* *
14827624 AATTATGAAAAGGGATAACTTCAACTATCG
1 AATTATGAAAAGGGATAGCTTCAGCTATCG
*
14827654 AATTATGAAAAGGGATAGCTTCGGCTATCG
1 AATTATGAAAAGGGATAGCTTCAGCTATCG
* **
14827684 AATTATGAAAATGGATAGCTTTGGCTATCG
1 AATTATGAAAAGGGATAGCTTCAGCTATCG
* *
14827714 AATCATGAAAAGGGATAGCTTTAGCTATCG
1 AATTATGAAAAGGGATAGCTTCAGCTATCG
*
14827744 AATTATGGAAAGGGAT
1 AATTATGAAAAGGGAT
14827760 GTGTCAACCA
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 96 1.00
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.28
Consensus pattern (30 bp):
AATTATGAAAAGGGATAGCTTCAGCTATCG
Found at i:14840180 original size:21 final size:22
Alignment explanation
Indices: 14840154--14840194 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14840144 AAGTAGTTAG
14840154 ATTTAATA-GAAAATAAAAAAA
1 ATTTAATATGAAAATAAAAAAA
*
14840175 ATTTAATATGAGAATAAAAA
1 ATTTAATATGAAAATAAAAA
14840195 GTATTGGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (22 bp):
ATTTAATATGAAAATAAAAAAA
Found at i:14848255 original size:45 final size:44
Alignment explanation
Indices: 14848142--14848305 Score: 217
Period size: 44 Copynumber: 3.8 Consensus size: 44
14848132 TACGGTATTA
14848142 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
14848186 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGTCTGTGAGAT-ACT
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
* *
14848230 ATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAATGAT
1 A-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
14848275 ATCAGG-CTTCGAGCCTAGCAGGCGA-AATGCC
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
14848306 AGTGGATGAA
Statistics
Matches: 106, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
42 6 0.06
43 18 0.17
44 44 0.42
45 37 0.35
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (44 bp):
ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:14852592 original size:15 final size:16
Alignment explanation
Indices: 14852572--14852606 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
14852562 ATGGTTTCAT
*
14852572 TATTTTT-TTAAATGA
1 TATTTTTATTAAATAA
14852587 TATTTTTATTAAATAA
1 TATTTTTATTAAATAA
14852603 TATT
1 TATT
14852607 ATAATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (16 bp):
TATTTTTATTAAATAA
Found at i:14861692 original size:15 final size:15
Alignment explanation
Indices: 14861620--14861700 Score: 60
Period size: 15 Copynumber: 5.5 Consensus size: 15
14861610 TCATCAACTG
14861620 TGGTTTAGGG-TTTA
1 TGGTTTAGGGTTTTA
* *
14861634 GGGTTTTGAGGTTTTAA
1 TGGTTTAG-GGTTTT-A
*
14861651 T-GTTTAAGG-TTTA
1 TGGTTTAGGGTTTTA
* * *
14861664 TGATTTATGATTTTA
1 TGGTTTAGGGTTTTA
14861679 TGGTTTAGGGTTTTA
1 TGGTTTAGGGTTTTA
*
14861694 GGGTTTA
1 TGGTTTA
14861701 AATTTAAGGT
Statistics
Matches: 50, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
13 2 0.04
14 14 0.28
15 26 0.52
16 7 0.14
17 1 0.02
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (15 bp):
TGGTTTAGGGTTTTA
Found at i:14861711 original size:21 final size:22
Alignment explanation
Indices: 14861682--14861729 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
14861672 GATTTTATGG
* *
14861682 TTTAGGGTTTTAGGGTT-TAAA
1 TTTAAGGTTTGAGGGTTCTAAA
14861703 TTTAAGGTTTGAGGGTTCGTAAA
1 TTTAAGGTTTGAGGGTTC-TAAA
14861726 TTTA
1 TTTA
14861730 GCTCTGGCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 15 0.65
23 8 0.35
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.46
Consensus pattern (22 bp):
TTTAAGGTTTGAGGGTTCTAAA
Found at i:14866411 original size:49 final size:49
Alignment explanation
Indices: 14866346--14866472 Score: 159
Period size: 49 Copynumber: 2.6 Consensus size: 49
14866336 ATCAAAGTCG
*
14866346 ATGCCATATCCCAGACAGGTCTTACACT-GACTTTCATATATCGAG-GTCA
1 ATGCCATATCCCAGACAGGTCTTACACTAG-CTCTCATATATCG-GTGTCA
* * * *
14866395 ATGCCATGTCCTAGACAGGTCTTACACTAGCTCTCATCTATCGGTGTCG
1 ATGCCATATCCCAGACAGGTCTTACACTAGCTCTCATATATCGGTGTCA
* *
14866444 ATACCATATCCCAGACTGGTCTTACACTA
1 ATGCCATATCCCAGACAGGTCTTACACTA
14866473 ACACACAACA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 1 0.01
49 65 0.97
50 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (49 bp):
ATGCCATATCCCAGACAGGTCTTACACTAGCTCTCATATATCGGTGTCA
Found at i:14866558 original size:48 final size:48
Alignment explanation
Indices: 14866492--14866655 Score: 224
Period size: 48 Copynumber: 3.5 Consensus size: 48
14866482 AAGCTAACGC
* *
14866492 CATGTCCCAAACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* ** * * *
14866540 CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* *
14866586 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
14866634 CATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
14866656 GTGCCTCTCG
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
46 37 0.38
47 4 0.04
48 57 0.58
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
Found at i:14866596 original size:46 final size:45
Alignment explanation
Indices: 14866535--14866706 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 45
14866525 ATCTCGAGGC
14866535 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTC-TCTCAATGT
* * * * * *
14866581 CGATGCATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC---TCTCTCTCAATGT
* *
14866629 CGATACATGTCCCAGACATGTCTTACAGT-GC-CTCTCGT-AATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCTC-TCAATGT
* *
14866672 GGCTGATGCATGTCTCAGGCATGTCTTACACTAGC
1 --C-GATGCATGTCCCAGACATGTCTTACACTAGC
14866707 ACACATATCA
Statistics
Matches: 101, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 1 0.01
46 55 0.54
47 4 0.04
48 33 0.33
49 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAATGT
Found at i:14866609 original size:94 final size:93
Alignment explanation
Indices: 14866492--14866706 Score: 301
Period size: 94 Copynumber: 2.3 Consensus size: 93
14866482 AAGCTAACGC
* * *
14866492 CATGTCCCAAACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATACATGTCCCAGACATGTC
14866557 TTACACTAG-CTCTCGTCTCAATGT-C-GATG
66 TTACACT-GCCTCTCG--T-AATGTGCTGATG
*
14866586 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATACATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATACATGTCCCAGACATGTC
*
14866651 TTACAGTGCCTCTCGTAATGTGGCTGATG
66 TTACACTGCCTCTCGTAATGT-GCTGATG
* *
14866680 CATGTCTCAGGCATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
14866707 ACACATATCA
Statistics
Matches: 109, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
91 5 0.05
92 1 0.01
93 2 0.02
94 101 0.93
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATACATGTCCCAGACATGTC
TTACACTGCCTCTCGTAATGTGCTGATG
Found at i:14867383 original size:20 final size:20
Alignment explanation
Indices: 14867358--14867396 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14867348 ACAATTTTAA
14867358 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
14867378 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
14867397 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:14874476 original size:29 final size:28
Alignment explanation
Indices: 14874421--14874535 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
14874411 GTGAGCATGA
* * *
14874421 ATATGAATGTGACTAGGCCTAACGGGCC
1 ATATAAATGTGATTAGGCCTAATGGGCC
14874449 ATATAAATGTGATTTAGGCCTAATGGGCC
1 ATATAAATGTGA-TTAGGCCTAATGGGCC
* * *
14874478 ATATACAGGTGATTTTGGCCTAATGGGCC
1 ATATAAATGTGA-TTAGGCCTAATGGGCC
* * * * *
14874507 AAATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTAGGCCTAATGGGCC
14874535 A
1 A
14874536 GATACAGGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 26 0.36
29 47 0.64
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTAGGCCTAATGGGCC
Found at i:14874544 original size:57 final size:58
Alignment explanation
Indices: 14874436--14874544 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 58
14874426 AATGTGACTA
* * *
14874436 GGCCTAACGGGCCATATAAATGTGATTTAGGCCTAATGGGCCATATACAGGTGATTTT
1 GGCCTAACGGGCCAAATAAATATGATTTAGGCCTAATGGGCCAGATACAGGTGATTTT
* * * *
14874494 GGCCTAATGGGCCAAATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 GGCCTAACGGGCCAAATAAATATGATTTAGGCCTAATGGGCCAGATACAGGT
14874545 ATGTAAAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 23 0.52
58 21 0.48
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (58 bp):
GGCCTAACGGGCCAAATAAATATGATTTAGGCCTAATGGGCCAGATACAGGTGATTTT
Found at i:14878022 original size:33 final size:33
Alignment explanation
Indices: 14877983--14878072 Score: 153
Period size: 33 Copynumber: 2.7 Consensus size: 33
14877973 CCCTTTCTCC
14877983 AAAAGCCGAAAACCCTTTTCTTTTCAAGATCCA
1 AAAAGCCGAAAACCCTTTTCTTTTCAAGATCCA
*
14878016 AAAAGCCAAAAACCCTTTTCTTTTCAAGATCCA
1 AAAAGCCGAAAACCCTTTTCTTTTCAAGATCCA
* *
14878049 AAAAGCTGAAAACCCTTTTGTTTT
1 AAAAGCCGAAAACCCTTTTCTTTT
14878073 TCTTTCTTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.37, C:0.24, G:0.09, T:0.30
Consensus pattern (33 bp):
AAAAGCCGAAAACCCTTTTCTTTTCAAGATCCA
Found at i:14879017 original size:29 final size:29
Alignment explanation
Indices: 14878962--14879076 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
14878952 GTGAGCATGA
* * *
14878962 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
14878990 ATATAAATGTGATTTAGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
14879019 ATATACAGGTGATTTGGGCCTAATGGGTC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
14879048 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
14879076 A
1 A
14879077 GATATAGGTA
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 26 0.36
29 46 0.64
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:14879051 original size:58 final size:57
Alignment explanation
Indices: 14878975--14879085 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
14878965 TGAATGTGAC
* *
14878975 TGGGCCTAACGGGCCATATAAATGTGATTTAGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTAGGCCTAATGGGCCAGATACAGGTGATT
* * * * * *
14879033 TGGGCCTAATGGGTCATATGAATATGATTGGGCTTAATGGGCCAGATATAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTAGGCCTAATGGGCCAGATACAGGT
14879086 ATGTGAAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 22 0.49
58 23 0.51
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTAGGCCTAATGGGCCAGATACAGGTGATT
Found at i:14890197 original size:44 final size:44
Alignment explanation
Indices: 14890129--14890499 Score: 365
Period size: 44 Copynumber: 8.4 Consensus size: 44
14890119 TCTACTACTG
* * *
14890129 CAACATC-AGTACATAATACCTGCTGGATATAAATGGCACATAGC
1 CAACATCGA-TACATAGTACTTGCTGCATATAAATGGCACATAGC
* *
14890173 CAACATCGATACATAGTACTTGCTGTATATAAATGGCACATAAC
1 CAACATCGATACATAGTACTTGCTGCATATAAATGGCACATAGC
* * * * * * * * *
14890217 TAACA-CTGGTACATAATACCTACTGTATATAACTGACATATAGC
1 CAACATC-GATACATAGTACTTGCTGCATATAAATGGCACATAGC
* * *
14890261 CAACATCAATACATAGTACCTGCTGCATATAAATAGCACATAGC
1 CAACATCGATACATAGTACTTGCTGCATATAAATGGCACATAGC
* * * *
14890305 CAACATCGATACATAATACTTGTTGCATATAAATGGCATATAAC
1 CAACATCGATACATAGTACTTGCTGCATATAAATGGCACATAGC
* * * *
14890349 TAACAAT-GGTACATAGTACTTGCTGTATATAAATGACACATAGC
1 CAAC-ATCGATACATAGTACTTGCTGCATATAAATGGCACATAGC
* *
14890393 CAACATCAATACATAGTA-TCTACTGCATATAAATGGCACATAGC
1 CAACATCGATACATAGTACT-TGCTGCATATAAATGGCACATAGC
* * * * *
14890437 CTACA-CTGGTACATAGTACTTGTTTCATATAAATGACACATAGC
1 CAACATC-GATACATAGTACTTGCTGCATATAAATGGCACATAGC
*
14890481 CAACATCGGTACATAGTAC
1 CAACATCGATACATAGTAC
14890500 CTGTTAAATA
Statistics
Matches: 266, Mismatches: 52, Indels: 18
0.79 0.15 0.05
Matches are distributed among these distances:
43 5 0.02
44 255 0.96
45 6 0.02
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (44 bp):
CAACATCGATACATAGTACTTGCTGCATATAAATGGCACATAGC
Found at i:14890375 original size:132 final size:132
Alignment explanation
Indices: 14890129--14890501 Score: 516
Period size: 132 Copynumber: 2.8 Consensus size: 132
14890119 TCTACTACTG
* * *
14890129 CAACATCAGTACATAATACCTGCTGGATATAAATGGCACATAGCCAACATCGATACATAGTACTT
1 CAACATCAATACATAGTACCTGCTGCATATAAATGGCACATAGCCAACATCGATACATAGTACTT
* * * * * *
14890194 GCTGTATATAAATGGCACATAACTAACACTGGTACATAATACCTACTGTATATAACTGACATATA
66 GTTGCATATAAATGGCACATAACTAACAATGGTACATAGTACCTACTGTATATAAATGACACATA
14890259 GC
131 GC
* *
14890261 CAACATCAATACATAGTACCTGCTGCATATAAATAGCACATAGCCAACATCGATACATAATACTT
1 CAACATCAATACATAGTACCTGCTGCATATAAATGGCACATAGCCAACATCGATACATAGTACTT
* * *
14890326 GTTGCATATAAATGGCATATAACTAACAATGGTACATAGTACTTGCTGTATATAAATGACACATA
66 GTTGCATATAAATGGCACATAACTAACAATGGTACATAGTACCTACTGTATATAAATGACACATA
14890391 GC
131 GC
* * * *
14890393 CAACATCAATACATAGTATCTACTGCATATAAATGGCACATAGCCTACA-CTGGTACATAGTACT
1 CAACATCAATACATAGTACCTGCTGCATATAAATGGCACATAGCCAACATC-GATACATAGTACT
* * * *
14890457 TGTTTCATATAAATGACACATAGCCAAC-ATCGGTACATAGTACCT
65 TGTTGCATATAAATGGCACATAACTAACAAT-GGTACATAGTACCT
14890502 GTTAAATATA
Statistics
Matches: 213, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
131 3 0.01
132 210 0.99
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (132 bp):
CAACATCAATACATAGTACCTGCTGCATATAAATGGCACATAGCCAACATCGATACATAGTACTT
GTTGCATATAAATGGCACATAACTAACAATGGTACATAGTACCTACTGTATATAAATGACACATA
GC
Found at i:14890514 original size:88 final size:88
Alignment explanation
Indices: 14890129--14890502 Score: 407
Period size: 88 Copynumber: 4.2 Consensus size: 88
14890119 TCTACTACTG
* *
14890129 CAACATCAGTACATAATACCTGCTGGATATAAATGGCACATAGCCAACATCGATACATAGTACTT
1 CAACATCGGTACATAATACCTGCTGCATATAAATGGCACATAGCCAACATCGATACATAGTACTT
* *
14890194 GCTGTATATAAATGGCACATAAC
66 GCTGTATATAAATGACACATAGC
* * * * * * * *
14890217 TAACA-CTGGTACATAATACCTACTGTATATAACTGACATATAGCCAACATCAATACATAGTACC
1 CAACATC-GGTACATAATACCTGCTGCATATAAATGGCACATAGCCAACATCGATACATAGTACT
*
14890281 TGCTGCATATAAAT-AGCACATAGC
65 TGCTGTATATAAATGA-CACATAGC
* * * * * * *
14890305 CAACATCGATACATAATACTTGTTGCATATAAATGGCATATAACTAACAAT-GGTACATAGTACT
1 CAACATCGGTACATAATACCTGCTGCATATAAATGGCACATAGCCAAC-ATCGATACATAGTACT
14890369 TGCTGTATATAAATGACACATAGC
65 TGCTGTATATAAATGACACATAGC
** * * * * *
14890393 CAACATCAATACATAGTATCTACTGCATATAAATGGCACATAGCCTACA-CTGGTACATAGTACT
1 CAACATCGGTACATAATACCTGCTGCATATAAATGGCACATAGCCAACATC-GATACATAGTACT
*
14890457 TG-TTTCATATAAATGACACATAGC
65 TGCTGT-ATATAAATGACACATAGC
*
14890481 CAACATCGGTACATAGTACCTG
1 CAACATCGGTACATAATACCTG
14890503 TTAAATATAA
Statistics
Matches: 237, Mismatches: 41, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
87 4 0.02
88 229 0.97
89 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (88 bp):
CAACATCGGTACATAATACCTGCTGCATATAAATGGCACATAGCCAACATCGATACATAGTACTT
GCTGTATATAAATGACACATAGC
Found at i:14890591 original size:14 final size:14
Alignment explanation
Indices: 14890574--14890600 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14890564 CTTTAACTTG
14890574 TATTCTATAACCTA
1 TATTCTATAACCTA
14890588 TATTCTATAACCT
1 TATTCTATAACCT
14890601 TTTCATCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (14 bp):
TATTCTATAACCTA
Found at i:14891809 original size:24 final size:24
Alignment explanation
Indices: 14891773--14891851 Score: 117
Period size: 24 Copynumber: 3.3 Consensus size: 24
14891763 ATATAATTAC
*
14891773 ATTTATTTTCTTTAAATTAAAAGTT
1 ATTT-TTTTCTTTAAATTAAAAATT
14891798 ATTTTTTTCTTTAAATTAAAAATT
1 ATTTTTTTCTTTAAATTAAAAATT
*
14891822 A--TTTTTCTTTAAATTAAAATTT
1 ATTTTTTTCTTTAAATTAAAAATT
14891844 ATTTTTTT
1 ATTTTTTT
14891852 AACTTCATGA
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
22 21 0.42
24 25 0.50
25 4 0.08
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (24 bp):
ATTTTTTTCTTTAAATTAAAAATT
Found at i:14891829 original size:22 final size:22
Alignment explanation
Indices: 14891778--14891849 Score: 108
Period size: 22 Copynumber: 3.2 Consensus size: 22
14891768 ATTACATTTA
*
14891778 TTTTCTTTAAATTAAAAGTTATTT
1 TTTTCTTTAAATTAAAAATTA--T
14891802 TTTTCTTTAAATTAAAAATTAT
1 TTTTCTTTAAATTAAAAATTAT
*
14891824 TTTTCTTTAAATTAAAATTTAT
1 TTTTCTTTAAATTAAAAATTAT
14891846 TTTT
1 TTTT
14891850 TTAACTTCAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
22 26 0.57
24 20 0.43
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (22 bp):
TTTTCTTTAAATTAAAAATTAT
Found at i:14892893 original size:123 final size:123
Alignment explanation
Indices: 14892751--14892996 Score: 492
Period size: 123 Copynumber: 2.0 Consensus size: 123
14892741 TAATTATTTA
14892751 TTATTTTAATTAATAAATTAATTAGACATTTTATAGAATATTATAGAAAGATGATGAAAAACCAT
1 TTATTTTAATTAATAAATTAATTAGACATTTTATAGAATATTATAGAAAGATGATGAAAAACCAT
14892816 CCATATCATTTTCATCTTCACGCCACCACCATTTTCAACTTTTTCTTTACTTACAAAT
66 CCATATCATTTTCATCTTCACGCCACCACCATTTTCAACTTTTTCTTTACTTACAAAT
14892874 TTATTTTAATTAATAAATTAATTAGACATTTTATAGAATATTATAGAAAGATGATGAAAAACCAT
1 TTATTTTAATTAATAAATTAATTAGACATTTTATAGAATATTATAGAAAGATGATGAAAAACCAT
14892939 CCATATCATTTTCATCTTCACGCCACCACCATTTTCAACTTTTTCTTTACTTACAAAT
66 CCATATCATTTTCATCTTCACGCCACCACCATTTTCAACTTTTTCTTTACTTACAAAT
14892997 AGGCCATTTC
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
123 123 1.00
ACGTcount: A:0.37, C:0.17, G:0.06, T:0.40
Consensus pattern (123 bp):
TTATTTTAATTAATAAATTAATTAGACATTTTATAGAATATTATAGAAAGATGATGAAAAACCAT
CCATATCATTTTCATCTTCACGCCACCACCATTTTCAACTTTTTCTTTACTTACAAAT
Found at i:14893637 original size:13 final size:14
Alignment explanation
Indices: 14893613--14893642 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
14893603 ATTTAAATCT
14893613 TGAAAAAGAAAATG
1 TGAAAAAGAAAATG
14893627 TGAAAAA-AAAATG
1 TGAAAAAGAAAATG
14893640 TGA
1 TGA
14893643 TGAAATAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (14 bp):
TGAAAAAGAAAATG
Found at i:14893896 original size:23 final size:23
Alignment explanation
Indices: 14893857--14893945 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 23
14893847 TATGCGCACA
* *
14893857 AATGAAATGTGGAACTTCGGTGC
1 AATGAAATGTGGCACTTTGGTGC
14893880 GAATGAAA-GTGGCACTTTGGTGC
1 -AATGAAATGTGGCACTTTGGTGC
* *
14893903 AATTGAAATGTGACACTTTGATGC
1 AA-TGAAATGTGGCACTTTGGTGC
14893927 AATCGAAATGTGGCACTTT
1 AAT-GAAATGTGGCACTTT
14893946 TATGCAATAT
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
22 2 0.04
23 19 0.33
24 36 0.63
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.29
Consensus pattern (23 bp):
AATGAAATGTGGCACTTTGGTGC
Found at i:14893952 original size:48 final size:47
Alignment explanation
Indices: 14893859--14893953 Score: 113
Period size: 47 Copynumber: 2.0 Consensus size: 47
14893849 TGCGCACAAA
* *
14893859 TGAAATGTGGAACTTCGGTGCGAATGAAAGTGGCACTTTGGTGCAAT
1 TGAAATGTGGAACTTCGATGCGAATGAAAGTGGCACTTTGATGCAAT
* *
14893906 TGAAATGT-GACACTTTGATGC-AATCGAAATGTGGCACTTTTATGCAAT
1 TGAAATGTGGA-ACTTCGATGCGAAT-GAAA-GTGGCACTTTGATGCAAT
14893954 ATTGTGATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
46 5 0.12
47 20 0.49
48 16 0.39
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (47 bp):
TGAAATGTGGAACTTCGATGCGAATGAAAGTGGCACTTTGATGCAAT
Found at i:14897803 original size:66 final size:67
Alignment explanation
Indices: 14897644--14897866 Score: 256
Period size: 67 Copynumber: 3.3 Consensus size: 67
14897634 CATATGCTGT
** * *
14897644 CATAGCTGAGCTATGGTTTTACACATCATACCTCATTTTTAATATCCTAACGAACTCTCTATGTT
1 CATAGCTGAGCTATGGTTTTACACATTTTACCCCATGTTTAATATCCTAACGAACTCTCTATGTT
*
14897709 TC
66 GC
* * * * *
14897711 CATAGTTGAGCTATGGTTTTATACATTTTACCCCATGTTTAATATCCTAGCGGA-TCTTTATGTT
1 CATAGCTGAGCTATGGTTTTACACATTTTACCCCATGTTTAATATCCTAACGAACTCTCTATGTT
14897775 GC
66 GC
* * * *
14897777 CATAGCTAAGCTATGGTCTTACACATTTTACCCCATGTTTAATGTCCT--GGTAGACTCTCTATG
1 CATAGCTGAGCTATGGTTTTACACATTTTACCCCATGTTTAATATCCTAACG-A-ACTCTCTATG
*
14897840 TTGT
64 TTGC
14897844 CATAG-TCGAGCTATGGTTTTACA
1 CATAGCT-GAGCTATGGTTTTACA
14897867 TATTACGCCC
Statistics
Matches: 131, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
64 1 0.01
66 55 0.42
67 75 0.57
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (67 bp):
CATAGCTGAGCTATGGTTTTACACATTTTACCCCATGTTTAATATCCTAACGAACTCTCTATGTT
GC
Found at i:14898056 original size:21 final size:22
Alignment explanation
Indices: 14898030--14898075 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
14898020 AGTAGATATA
14898030 TGTTTT-AATATTCATGCATTT
1 TGTTTTCAATATTCATGCATTT
*
14898051 TGTTTTCAATCTTCATGCATTT
1 TGTTTTCAATATTCATGCATTT
14898073 TGT
1 TGT
14898076 CATTCATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.20, C:0.13, G:0.11, T:0.57
Consensus pattern (22 bp):
TGTTTTCAATATTCATGCATTT
Found at i:14900067 original size:18 final size:17
Alignment explanation
Indices: 14900040--14900114 Score: 59
Period size: 18 Copynumber: 4.3 Consensus size: 17
14900030 AAATAAATAA
14900040 ATTA-TTTAAATTATTT
1 ATTATTTTAAATTATTT
14900056 ATGTATTTTAAATTTATTT
1 AT-TATTTTAAA-TTATTT
*
14900075 GTATATTTCTAAATT-TTT
1 AT-TATTT-TAAATTATTT
14900093 AATTATTTTATAA--ATTT
1 -ATTATTTTA-AATTATTT
14900110 ATTAT
1 ATTAT
14900115 AATATTTTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
16 7 0.14
17 7 0.14
18 16 0.33
19 15 0.31
20 4 0.08
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (17 bp):
ATTATTTTAAATTATTT
Found at i:14900074 original size:19 final size:19
Alignment explanation
Indices: 14900046--14900112 Score: 59
Period size: 19 Copynumber: 3.5 Consensus size: 19
14900036 ATAAATTATT
14900046 TAAA-TTATTTATGTATTT-
1 TAAATTTATTTAT-TATTTA
* *
14900064 TAAATTTATTTGTATATTTC
1 TAAATTTATTTAT-TATTTA
*
14900084 TAAATTT-TTAATTATTTTA
1 TAAATTTATTTATTA-TTTA
14900103 TAAATTTATT
1 TAAATTTATT
14900113 ATAATATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 6 0.15
19 25 0.62
20 9 0.22
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.61
Consensus pattern (19 bp):
TAAATTTATTTATTATTTA
Found at i:14902615 original size:24 final size:24
Alignment explanation
Indices: 14902584--14902631 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
14902574 CTATGGATGG
14902584 TTTTGACATAAAGATATCAAGGCT
1 TTTTGACATAAAGATATCAAGGCT
* *
14902608 TTTTGACATATAGATATCCAGGCT
1 TTTTGACATAAAGATATCAAGGCT
14902632 GCAAACCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (24 bp):
TTTTGACATAAAGATATCAAGGCT
Found at i:14903137 original size:12 final size:12
Alignment explanation
Indices: 14903120--14903144 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14903110 TCTGACTTAA
14903120 TAAAATGACAAC
1 TAAAATGACAAC
14903132 TAAAATGACAAC
1 TAAAATGACAAC
14903144 T
1 T
14903145 CCATGATGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (12 bp):
TAAAATGACAAC
Found at i:14905120 original size:3 final size:3
Alignment explanation
Indices: 14905112--14905149 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
14905102 AACGCGTTTC
*
14905112 TAT TAT TAT TAT TAT TAT TATT TAT CAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT T
14905150 CTTCTATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:14908183 original size:15 final size:15
Alignment explanation
Indices: 14908165--14908197 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14908155 AACAGAGCAA
14908165 AGCAGAATGGAACAG
1 AGCAGAATGGAACAG
*
14908180 AGCAGAATTGAACAG
1 AGCAGAATGGAACAG
14908195 AGC
1 AGC
14908198 TACACAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.45, C:0.15, G:0.30, T:0.09
Consensus pattern (15 bp):
AGCAGAATGGAACAG
Found at i:14910144 original size:85 final size:85
Alignment explanation
Indices: 14910001--14910173 Score: 346
Period size: 85 Copynumber: 2.0 Consensus size: 85
14909991 ATGTTTACTT
14910001 TATTAATTGGTGTTATATGATTTTTATTCAACATTTTATGTTCTTTTAAATTTATTTGGATTGAG
1 TATTAATTGGTGTTATATGATTTTTATTCAACATTTTATGTTCTTTTAAATTTATTTGGATTGAG
14910066 TTTAGATAAATAAATAAACA
66 TTTAGATAAATAAATAAACA
14910086 TATTAATTGGTGTTATATGATTTTTATTCAACATTTTATGTTCTTTTAAATTTATTTGGATTGAG
1 TATTAATTGGTGTTATATGATTTTTATTCAACATTTTATGTTCTTTTAAATTTATTTGGATTGAG
14910151 TTTAGATAAATAAATAAACA
66 TTTAGATAAATAAATAAACA
14910171 TAT
1 TAT
14910174 ATTTTAGGTC
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 88 1.00
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.50
Consensus pattern (85 bp):
TATTAATTGGTGTTATATGATTTTTATTCAACATTTTATGTTCTTTTAAATTTATTTGGATTGAG
TTTAGATAAATAAATAAACA
Found at i:14912871 original size:21 final size:22
Alignment explanation
Indices: 14912829--14912873 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
14912819 TCTCTCACAT
*
14912829 TCTCAAATCTCTCTTAAATTTC
1 TCTCAAATCCCTCTTAAATTTC
*
14912851 TCTCAATTCCCTCTT-AATTTC
1 TCTCAAATCCCTCTTAAATTTC
14912872 TC
1 TC
14912874 ACTTAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (22 bp):
TCTCAAATCCCTCTTAAATTTC
Found at i:14914123 original size:15 final size:15
Alignment explanation
Indices: 14914105--14914145 Score: 64
Period size: 16 Copynumber: 2.7 Consensus size: 15
14914095 TAAAAAATAT
14914105 AAAAAAAACCTTAAA
1 AAAAAAAACCTTAAA
14914120 AAAACAAAACCTTAAA
1 AAAA-AAAACCTTAAA
*
14914136 AAACAAAACC
1 AAAAAAAACC
14914146 CTAACCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.71, C:0.20, G:0.00, T:0.10
Consensus pattern (15 bp):
AAAAAAAACCTTAAA
Found at i:14914130 original size:16 final size:15
Alignment explanation
Indices: 14914105--14914145 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
14914095 TAAAAAATAT
14914105 AAAA-AAAACCTTAAA
1 AAAACAAAACCTT-AA
14914120 AAAACAAAACCTTAA
1 AAAACAAAACCTTAA
14914135 AAAACAAAACC
1 AAAACAAAACC
14914146 CTAACCTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 17 0.68
16 8 0.32
ACGTcount: A:0.71, C:0.20, G:0.00, T:0.10
Consensus pattern (15 bp):
AAAACAAAACCTTAA
Found at i:14914866 original size:38 final size:38
Alignment explanation
Indices: 14914811--14914886 Score: 93
Period size: 38 Copynumber: 2.0 Consensus size: 38
14914801 GTAACAAAAA
*
14914811 ATATTAATGAGTCACTGATTT-GCAACTTTTCTATAACG
1 ATATTAATGAGTCACTGATTTAGC-ACTTTTCGATAACG
* *
14914849 ATATTAAT-AGGTGACTGATTTATCACTTTTCGATAACG
1 ATATTAATGA-GTCACTGATTTAGCACTTTTCGATAACG
14914887 TTAATGATTG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 1 0.03
38 31 0.94
39 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (38 bp):
ATATTAATGAGTCACTGATTTAGCACTTTTCGATAACG
Found at i:14919565 original size:26 final size:25
Alignment explanation
Indices: 14919526--14919575 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
14919516 GGAGATCAAC
*
14919526 TTGAACTTGGGCATAAACAATTGAGT
1 TTGAACTTGAGCATAAA-AATTGAGT
* *
14919552 TTGAAGTTGAGCATGAAAATTGAG
1 TTGAACTTGAGCATAAAAATTGAG
14919576 CTTATTTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (25 bp):
TTGAACTTGAGCATAAAAATTGAGT
Found at i:14920734 original size:13 final size:13
Alignment explanation
Indices: 14920717--14920760 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
14920707 ATTTCAATTT
14920717 TATTTTAATAATAA
1 TATTTTAA-AATAA
14920731 -ATTTTAAAAATAA
1 TATTTT-AAAATAA
*
14920744 TAATTTAAAATAA
1 TATTTTAAAATAA
14920757 TATT
1 TATT
14920761 ATTCACATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 20 0.77
14 6 0.23
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TATTTTAAAATAA
Found at i:14923747 original size:11 final size:11
Alignment explanation
Indices: 14923730--14923768 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
14923720 TGTTATTTTT
14923730 TTATTTTGTTA
1 TTATTTTGTTA
* *
14923741 CTATTTTATTA
1 TTATTTTGTTA
*
14923752 TTATGTTGTTA
1 TTATTTTGTTA
14923763 TTATTT
1 TTATTT
14923769 AGATATTGTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.21, C:0.03, G:0.08, T:0.69
Consensus pattern (11 bp):
TTATTTTGTTA
Found at i:14923764 original size:19 final size:19
Alignment explanation
Indices: 14923720--14923764 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
14923710 TATTTTTGAA
* *
14923720 TGTTATTTTTTTATTTTGT
1 TGTTATTTTATTATTATGT
**
14923739 TACTATTTTATTATTATGT
1 TGTTATTTTATTATTATGT
14923758 TGTTATT
1 TGTTATT
14923765 ATTTAGATAT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.18, C:0.02, G:0.09, T:0.71
Consensus pattern (19 bp):
TGTTATTTTATTATTATGT
Found at i:14923829 original size:30 final size:30
Alignment explanation
Indices: 14923793--14923854 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
14923783 ATTTATTTTC
14923793 TTGTTAACTTTGTTATTATTTTAAAAGTAT
1 TTGTTAACTTTGTTATTATTTTAAAAGTAT
* * *
14923823 TTGTTAATTTTTTTATTATTTTAAAGGTAT
1 TTGTTAACTTTGTTATTATTTTAAAAGTAT
14923853 TT
1 TT
14923855 ACTTGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (30 bp):
TTGTTAACTTTGTTATTATTTTAAAAGTAT
Found at i:14923887 original size:15 final size:15
Alignment explanation
Indices: 14923838--14923888 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
14923828 AATTTTTTTA
*
14923838 TTATTTTAAAGGTAT
1 TTATTTTAATGGTAT
*
14923853 TTACTTGTTAAGTTGTAT
1 TTA-TT-TTAA-TGGTAT
14923871 TTATTTTAATGGTAT
1 TTATTTTAATGGTAT
14923886 TTA
1 TTA
14923889 AGTCTATGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 11 0.37
16 6 0.20
17 6 0.20
18 7 0.23
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.57
Consensus pattern (15 bp):
TTATTTTAATGGTAT
Found at i:14925754 original size:23 final size:22
Alignment explanation
Indices: 14925699--14925756 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
14925689 TTAATAACAT
* * *
14925699 TATTTACTTTATGTAATTATTA
1 TATTTAATTTATGTAAATAATA
*
14925721 AATTTATATTTATGTTAAATAATA
1 TATTTA-ATTTATG-TAAATAATA
14925745 TATTTAATTTAT
1 TATTTAATTTAT
14925757 AATCTATCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
22 5 0.17
23 12 0.41
24 12 0.41
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (22 bp):
TATTTAATTTATGTAAATAATA
Found at i:14928782 original size:19 final size:20
Alignment explanation
Indices: 14928760--14928803 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
14928750 AAGAAATTTG
*
14928760 AAAATTATTT-TTAAAATTC
1 AAAATTATTTATAAAAATTC
14928779 AAAA-TATTTATAAAAATTC
1 AAAATTATTTATAAAAATTC
*
14928798 TAAATT
1 AAAATT
14928804 TATATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 5 0.24
19 15 0.71
20 1 0.05
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (20 bp):
AAAATTATTTATAAAAATTC
Found at i:14928871 original size:19 final size:18
Alignment explanation
Indices: 14928833--14928884 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 18
14928823 TAATTTTTTT
14928833 AAAAAATCT-AAAAATCTA
1 AAAAAAT-TAAAAAATCTA
14928851 AAAGAATATTAAAAAAT-TA
1 AAA-AA-ATTAAAAAATCTA
*
14928870 AAAAAATTATAAAAT
1 AAAAAATTAAAAAAT
14928885 AATAGTTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 9 0.30
18 5 0.17
19 8 0.27
20 8 0.27
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (18 bp):
AAAAAATTAAAAAATCTA
Found at i:14933063 original size:6 final size:6
Alignment explanation
Indices: 14933052--14933078 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
14933042 TCTTTTTTTT
14933052 AATTAC AATTAC AATTAC AATTAC AAT
1 AATTAC AATTAC AATTAC AATTAC AAT
14933079 GTAATAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (6 bp):
AATTAC
Found at i:14935697 original size:3 final size:3
Alignment explanation
Indices: 14935684--14935726 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
14935674 AATTTTAATT
14935684 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14935727 TTGCTTATAC
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:14938075 original size:39 final size:39
Alignment explanation
Indices: 14937996--14938075 Score: 106
Period size: 39 Copynumber: 2.1 Consensus size: 39
14937986 TACTTTTTGT
* * *
14937996 TTGGTGTGATTCGAGTGGATCAGCTCTTATAAGTTTCTG
1 TTGGTGTGATTCGAGTGGACCAGCTCTTATAAGATACTG
* * *
14938035 TTGGTGTGCTTCGGGTGGACCAGCTCTTATGAGATACTG
1 TTGGTGTGATTCGAGTGGACCAGCTCTTATAAGATACTG
14938074 TT
1 TT
14938076 TGGCGTATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.16, C:0.15, G:0.30, T:0.39
Consensus pattern (39 bp):
TTGGTGTGATTCGAGTGGACCAGCTCTTATAAGATACTG
Found at i:14947139 original size:16 final size:17
Alignment explanation
Indices: 14947118--14947151 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14947108 AATGTCTAGA
14947118 AAAATTA-TTAATTGAG
1 AAAATTACTTAATTGAG
14947134 AAAATTATCTTAATTGAG
1 AAAATTA-CTTAATTGAG
14947152 GGGTTAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
18 9 0.56
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (17 bp):
AAAATTACTTAATTGAG
Found at i:14951822 original size:16 final size:16
Alignment explanation
Indices: 14951799--14951838 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
14951789 CTAGGGTTAC
14951799 GAAACCCATGTATCTA
1 GAAACCCATGTATCTA
*
14951815 GTAACCCATGTATCTA
1 GAAACCCATGTATCTA
14951831 GAAACCCA
1 GAAACCCA
14951839 AGTAACTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.28, G:0.12, T:0.23
Consensus pattern (16 bp):
GAAACCCATGTATCTA
Found at i:14953157 original size:18 final size:20
Alignment explanation
Indices: 14953129--14953173 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
14953119 GTTTAGGATC
14953129 ATGGATTTAGG-TGAAATT-A
1 ATGG-TTTAGGATGAAATTAA
14953148 ATGGTTTAGGTATGAAATTAA
1 ATGGTTTAGG-ATGAAATTAA
14953169 ATGGT
1 ATGGT
14953174 AGTTAGGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.26
19 4 0.17
20 7 0.30
21 6 0.26
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.38
Consensus pattern (20 bp):
ATGGTTTAGGATGAAATTAA
Found at i:14956062 original size:45 final size:45
Alignment explanation
Indices: 14955983--14956141 Score: 174
Period size: 45 Copynumber: 3.5 Consensus size: 45
14955973 TTCCATAGAG
* * * * * * *
14955983 TCTTTCAGCTATTGTCTTAGTCCTTTTTACCATGATGTCGTAGCA
1 TCTTTCAGCTATGGTTTTACTCATTTTCATCATGATGTCATAGCA
* * * ***
14956028 TCTTTCAGTTATGGTTTTACTCATTTTCGTCATGATGCCATATTG
1 TCTTTCAGCTATGGTTTTACTCATTTTCATCATGATGTCATAGCA
* *
14956073 TCTTTCAGCTATGGTTTTACTCATTTTTATCATGACGTCATAGCA
1 TCTTTCAGCTATGGTTTTACTCATTTTCATCATGATGTCATAGCA
*
14956118 TCTTTCAGCTATGGTCTTACTCAT
1 TCTTTCAGCTATGGTTTTACTCAT
14956142 CTTGGCGTAT
Statistics
Matches: 92, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 92 1.00
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (45 bp):
TCTTTCAGCTATGGTTTTACTCATTTTCATCATGATGTCATAGCA
Found at i:14964962 original size:21 final size:20
Alignment explanation
Indices: 14964925--14964966 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
14964915 AAAAACACAC
*
14964925 ACCATAATCTCATTTTATAAA
1 ACCAAAATCTCATTTTA-AAA
14964946 ACCAAAAT-TCATATTTAAAA
1 ACCAAAATCTCAT-TTTAAAA
14964966 A
1 A
14964967 TAATTATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (20 bp):
ACCAAAATCTCATTTTAAAA
Found at i:14965047 original size:18 final size:18
Alignment explanation
Indices: 14965011--14965048 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
14965001 AAATTATGAT
*
14965011 AATTATAATTATAATTTA
1 AATTATAATTATAAGTTA
14965029 AATTATAATTACT-AGTTA
1 AATTATAATTA-TAAGTTA
14965047 AA
1 AA
14965049 GATTATGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (18 bp):
AATTATAATTATAAGTTA
Found at i:14973477 original size:16 final size:16
Alignment explanation
Indices: 14973455--14973523 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
14973445 TTTGGTTCGC
14973455 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
14973471 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14973487 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
14973504 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14973520 TGTA
1 TGTA
14973524 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:14973501 original size:33 final size:32
Alignment explanation
Indices: 14973455--14973523 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
14973445 TTTGGTTCGC
14973455 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
14973487 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
14973520 TGTA
1 TGTA
14973524 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:14973588 original size:44 final size:45
Alignment explanation
Indices: 14973504--14973594 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
14973494 GGATTAGAGG
* * *
14973504 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
14973549 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
14973593 TG
1 TG
14973595 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:14974020 original size:18 final size:17
Alignment explanation
Indices: 14973999--14974033 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14973989 TTATTATTAA
*
14973999 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14974017 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14974034 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14974121 original size:120 final size:120
Alignment explanation
Indices: 14973742--14975565 Score: 3270
Period size: 120 Copynumber: 15.2 Consensus size: 120
14973732 ATCATATTTA
*
14973742 AACATAATTATTATTGAATATATTTTAATTAAAATATATAATTTAAT-AAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
14973806 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
14973861 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
*
14973925 AATATTCTTATATTAATTTACTGAAATCATAATATATAATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
14973982 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
14974047 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
14974102 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
14974167 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
14974222 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
*
14974286 AATATTCTTATATTAATTTACTGAAATCATAATATATAATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
14974343 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
14974408 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
14974463 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
14974527 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
14974582 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
*
14974646 AATATTCTTATATTAATTTACTGAAATCATAATATATAATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
14974703 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
14974768 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
14974823 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
14974887 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
14974942 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
*
14975006 AATATTCTTATATTAATTTACTGAAATCATAATATATAATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
14975063 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
14975128 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
14975183 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
14975248 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
14975303 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
14975367 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
14975424 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
14975488 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
14975543 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
14975566 AACTTGAAAA
Statistics
Matches: 1641, Mismatches: 46, Indels: 36
0.95 0.03 0.02
Matches are distributed among these distances:
118 1 0.00
119 365 0.22
120 709 0.43
121 561 0.34
122 5 0.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:14974291 original size:241 final size:240
Alignment explanation
Indices: 14973742--14975565 Score: 3270
Period size: 241 Copynumber: 7.6 Consensus size: 240
14973732 ATCATATTTA
*
14973742 AACATAATTATTATTGAATATATTTTAATTAAAATATATAATTTAAT-AAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
14973806 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
* *
14973871 TTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-TAATATTCTTA
131 TTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATTAATATTCTTA
*
14973935 TATTAATTTACTGAAATCATAATATATAATACTGTAAAATATAAATT
194 TATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
14973982 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
14974047 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
*
14974112 TTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
131 TTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
14974177 TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
196 TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
14974222 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
*
14974286 AATATTCTTATATTAATTTACTGAAATCATAATATATAATACTGTAAAATATAAATTAACATAAT
64 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAAT
14974351 TATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTA
129 TATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTA
14974416 TATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
194 TATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
14974463 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
14974527 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
* *
14974592 TTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-TAATATTCTTA
131 TTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATTAATATTCTTA
*
14974656 TATTAATTTACTGAAATCATAATATATAATACTGTAAAATATAAATT
194 TATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
14974703 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
14974768 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
*
14974833 TTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAATATTCTTATA
131 TTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
*
14974897 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
196 TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
14974942 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
*
14975006 AATATTCTTATATTAATTTACTGAAATCATAATATATAATACTGTAAAATATAAATTAACATAAT
64 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAAT
14975071 TATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTA
129 TATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTA
14975136 TATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
194 TATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
14975183 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
14975248 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
* *
14975313 TTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-TAATATTCTTA
131 TTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATTAATATTCTTA
14975377 TATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
194 TATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
14975424 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
14975488 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
14975553 TTATTAAATATAT
131 TTATTAAATATAT
14975566 AACTTGAAAA
Statistics
Matches: 1532, Mismatches: 37, Indels: 30
0.96 0.02 0.02
Matches are distributed among these distances:
238 2 0.00
239 230 0.15
240 597 0.39
241 701 0.46
242 2 0.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (240 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
TTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:14974381 original size:18 final size:17
Alignment explanation
Indices: 14974360--14974394 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14974350 TTATTATTAA
*
14974360 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14974378 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14974395 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14974741 original size:18 final size:17
Alignment explanation
Indices: 14974720--14974754 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14974710 TTATTATTAA
*
14974720 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14974738 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14974755 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14975101 original size:18 final size:17
Alignment explanation
Indices: 14975080--14975114 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14975070 TTATTATTAA
*
14975080 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14975098 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14975115 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14976186 original size:6 final size:6
Alignment explanation
Indices: 14976175--14976202 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14976165 ATTATATTTA
14976175 CCATGC CCATGC CCATGC CCATGC CCAT
1 CCATGC CCATGC CCATGC CCATGC CCAT
14976203 TTTCTTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.50, G:0.14, T:0.18
Consensus pattern (6 bp):
CCATGC
Found at i:14980806 original size:22 final size:23
Alignment explanation
Indices: 14980776--14980822 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
14980766 AAAATATTTT
* *
14980776 AAATGTTAT-AATTTTTTTAGAA
1 AAATATTATAAATTTTTATAGAA
14980798 AAATATTATAAATTTTTATAGAA
1 AAATATTATAAATTTTTATAGAA
14980821 AA
1 AA
14980823 TTTATTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (23 bp):
AAATATTATAAATTTTTATAGAA
Found at i:14980823 original size:22 final size:21
Alignment explanation
Indices: 14980776--14980827 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
14980766 AAAATATTTT
*
14980776 AAATGTTATAATTTTTTTAGAA
1 AAAT-TTATAATTTTTATAGAA
14980798 AAATATTATAAATTTTTATAG-A
1 AAAT-TTAT-AATTTTTATAGAA
14980820 AAATTTAT
1 AAATTTAT
14980828 TGAAACACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 4 0.15
22 13 0.48
23 10 0.37
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (21 bp):
AAATTTATAATTTTTATAGAA
Found at i:14982171 original size:12 final size:13
Alignment explanation
Indices: 14982149--14982177 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
14982139 GTGATTCTAT
14982149 TTTTAAAATATAA
1 TTTTAAAATATAA
14982162 TTTT-AAATATAA
1 TTTTAAAATATAA
14982174 TTTT
1 TTTT
14982178 TTTCTATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TTTTAAAATATAA
Found at i:14982841 original size:17 final size:17
Alignment explanation
Indices: 14982819--14982851 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14982809 ATGGACACCT
14982819 TTATTACAA-ATTCTAAG
1 TTATTA-AATATTCTAAG
14982836 TTATTAAATATTCTAA
1 TTATTAAATATTCTAA
14982852 ATAACTCCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.45
Consensus pattern (17 bp):
TTATTAAATATTCTAAG
Found at i:14983444 original size:115 final size:116
Alignment explanation
Indices: 14983238--14983471 Score: 299
Period size: 115 Copynumber: 2.0 Consensus size: 116
14983228 AAATAAATTC
* * ** *
14983238 AATATTCAAAGTCTATCCTTTCTTCCTTTCATTTTATGTGTGTATGAAGGCAGTAAAAATACTAT
1 AATATTCAAAGTCCATCCTTTCTTCCTTCCATTTTATGCATGTATGAAGGCAGTAAAAATACCAT
* *** ** * *
14983303 GGAGACCCTTGTATAAAGAGTTAGATTGCACTTTGCTTCATTTACTCAAAA
66 GGAGACCCTTGTAGAAAGAAAAAGATTGCACTTTGCCCCATATACTAAAAA
* *
14983354 AATATTCAAAGTCCATCC-TTCTTCCTTCCATTTTATGCATGTATGAAGGCGGTAAAAGTACCAT
1 AATATTCAAAGTCCATCCTTTCTTCCTTCCATTTTATGCATGTATGAAGGCAGTAAAAATACCAT
* * *
14983418 GGAGATCCTTGTAGAAGGAAAAAGATTGCATTTTGCCCCATATACTAAAAA
66 GGAGACCCTTGTAGAAAGAAAAAGATTGCACTTTGCCCCATATACTAAAAA
14983469 AAT
1 AAT
14983472 GGTAAATTAG
Statistics
Matches: 100, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
115 83 0.83
116 17 0.17
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (116 bp):
AATATTCAAAGTCCATCCTTTCTTCCTTCCATTTTATGCATGTATGAAGGCAGTAAAAATACCAT
GGAGACCCTTGTAGAAAGAAAAAGATTGCACTTTGCCCCATATACTAAAAA
Found at i:14984670 original size:31 final size:30
Alignment explanation
Indices: 14984635--14984765 Score: 102
Period size: 31 Copynumber: 4.3 Consensus size: 30
14984625 ATGTCATATT
* *
14984635 TGGTACTTGTATTTTCATAAAATGTCTAATG
1 TGGTACTTGTACTTTCA-AAAATGTCCAATG
* * * * ** *
14984666 TGGTACCTGAACTATCAATATATGTTTATTG
1 TGGTACTTGTACTTTCAA-AAATGTCCAATG
* * *
14984697 TAGTACTTGTACTTTCATAAAATATCCATTG
1 TGGTACTTGTACTTTCA-AAAATGTCCAATG
* *
14984728 TGATACTTGTACTTT-AAAAGTGTCCAATG
1 TGGTACTTGTACTTTCAAAAATGTCCAATG
14984757 TGGTACTTG
1 TGGTACTTG
14984766 AATTATCAAT
Statistics
Matches: 77, Mismatches: 21, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
29 18 0.23
30 2 0.03
31 56 0.73
32 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (30 bp):
TGGTACTTGTACTTTCAAAAATGTCCAATG
Found at i:14984758 original size:29 final size:31
Alignment explanation
Indices: 14984700--14984765 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 31
14984690 TTTATTGTAG
*
14984700 TACTTGTACTTTCATAAAATATCCATTGTGA
1 TACTTGTACTTTCATAAAATATCCAATGTGA
* * *
14984731 TACTTGTACTTT-A-AAAGTGTCCAATGTGG
1 TACTTGTACTTTCATAAAATATCCAATGTGA
14984760 TACTTG
1 TACTTG
14984766 AATTATCAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 18 0.58
30 1 0.03
31 12 0.39
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (31 bp):
TACTTGTACTTTCATAAAATATCCAATGTGA
Found at i:14991523 original size:19 final size:17
Alignment explanation
Indices: 14991499--14991534 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
14991489 ACTAATTGAC
14991499 TTCATTCATTCATTTTTTT
1 TTCATT-ATT-ATTTTTTT
14991518 TTCATTATTATTTTTTT
1 TTCATTATTATTTTTTT
14991535 AATTAAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 3 0.18
19 6 0.35
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (17 bp):
TTCATTATTATTTTTTT
Found at i:14992714 original size:37 final size:37
Alignment explanation
Indices: 14992672--14992743 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
14992662 TACAGTTTCT
*
14992672 CAATTCAATATACATTTCA-ATTATTCACATA-TAATCA
1 CAATTCAATATA-ATTTCATATAATTCA-ATACTAATCA
*
14992709 CAATTCAATTTAATTTCATATAATTCAATACTAAT
1 CAATTCAATATAATTTCATATAATTCAATACTAAT
14992744 ACTTGCCATG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 9 0.29
37 22 0.71
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (37 bp):
CAATTCAATATAATTTCATATAATTCAATACTAATCA
Found at i:14993658 original size:3 final size:3
Alignment explanation
Indices: 14993650--14993697 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
14993640 TTAATTTATT
* * * *
14993650 TAA TAA TAA TAA TAA T-A TAG TTA TAA TAA TAC TAC TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14993697 T
1 T
14993698 TAAATCTACT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:14994921 original size:367 final size:367
Alignment explanation
Indices: 14994248--14995341 Score: 2120
Period size: 367 Copynumber: 3.0 Consensus size: 367
14994238 GTGTTGGATG
* *
14994248 GTAAGTGGGACTTTATTTAGTTAAATAGTTATAATAGTCAGTAGAATAAAGAAACAAAAGGAAAA
1 GTAAGTGGGACTTTATTTAGTTCAATAGTTATAATAGTCAGTTGAATAAAGAAACAAAAGGAAAA
14994313 ACATTTTCTTTAGCTTGTTCATCATCTTCTTTCACAAAAAAAAGGGGAAAAGCTAGGTTTGGTTA
66 ACATTTTCTTTAGCTTGTTCATCATCTTCTTTCACAAAAAAAAGGGGAAAAGCTAGGTTTGGTTA
14994378 TTCAAGTTTCATTCCTTGATTAGATAAGTTATTTTAGTTTGTTTCTTGTAATTTTTATGTTTTTG
131 TTCAAGTTTCATTCCTTGATTAGATAAGTTATTTTAGTTTGTTTCTTGTAATTTTTATGTTTTTG
14994443 GAATCCCAAAAGCTTGATTTAGCTAACCTAAGGACTATTTCGTGAAATTGCTAAAGTTTTTTTAA
196 GAATCCCAAAAGCTTGATTTAGCTAACCTAAGGACTATTTCGTGAAATTGCTAAAGTTTTTTTAA
14994508 AGTTTCAATTGATGTTTTCTTGGAGTATTTATGGTTATTTGGTTAGTTTTGAAGCTTAGATATGT
261 AGTTTCAATTGATGTTTTCTTGGAGTATTTATGGTTATTTGGTTAGTTTTGAAGCTTAGATATGT
14994573 TAATGGACTAGTTTGTAAAGTAAAAGTTGTTATTTTAGATAT
326 TAATGGACTAGTTTGTAAAGTAAAAGTTGTTATTTTAGATAT
14994615 GTAAGTGGGACTTTATTTAGTTCAATAGTTATAATAGTCAGTTGAATAAAGAAACAAAAGGAAAA
1 GTAAGTGGGACTTTATTTAGTTCAATAGTTATAATAGTCAGTTGAATAAAGAAACAAAAGGAAAA
14994680 ACATTTTCTTTAGCTTGTTCATCATCTTCTTTCACAAAAAAAAGGGGAAAAGCTAGGTTTGGTTA
66 ACATTTTCTTTAGCTTGTTCATCATCTTCTTTCACAAAAAAAAGGGGAAAAGCTAGGTTTGGTTA
14994745 TTCAAGTTTCATTCCTTGATTAGATAAGTTATTTTAGTTTGTTTCTTGTAATTTTTATGTTTTTG
131 TTCAAGTTTCATTCCTTGATTAGATAAGTTATTTTAGTTTGTTTCTTGTAATTTTTATGTTTTTG
14994810 GAATCCCAAAAGCTTGATTTAGCTAACCTAAGGACTATTTCGTGAAATTGCTAAAGTTTTTTTAA
196 GAATCCCAAAAGCTTGATTTAGCTAACCTAAGGACTATTTCGTGAAATTGCTAAAGTTTTTTTAA
14994875 AGTTTCAATTGATGTTTTCTTGGAGTATTTATGGTTATTTGGTTAGTTTTGAAGCTTAGATATGT
261 AGTTTCAATTGATGTTTTCTTGGAGTATTTATGGTTATTTGGTTAGTTTTGAAGCTTAGATATGT
14994940 TAATGGACTAGTTTGTAAAGTAAAAGTTGTTATTTTAGATAT
326 TAATGGACTAGTTTGTAAAGTAAAAGTTGTTATTTTAGATAT
14994982 GTAAGTGGGACTTTATTTAGTTCAATAGTTATAATAGTCAGTTGAATAAAGAAACAAAAGGAAAA
1 GTAAGTGGGACTTTATTTAGTTCAATAGTTATAATAGTCAGTTGAATAAAGAAACAAAAGGAAAA
14995047 ACATTTTCTTTAGCTTGTTCATCATCTTCTTTCAC-AAAAAAAGGGGAAAAGCTAGGTTTGGTTA
66 ACATTTTCTTTAGCTTGTTCATCATCTTCTTTCACAAAAAAAAGGGGAAAAGCTAGGTTTGGTTA
**
14995111 TTCAAGTTTTGTTCCTTGATTAGATAAGTTATTTTAGTTTGTTTCTTGTAATTTTTTATGTTTTT
131 TTCAAGTTTCATTCCTTGATTAGATAAGTTATTTTAGTTTGTTTCTTGTAA-TTTTTATGTTTTT
*
14995176 GGAATCCCAAAAGCTTGATTTAGCTAACCTAAGGACTATTTCGTGAAACTGCTAAAG-TTTTTTA
195 GGAATCCCAAAAGCTTGATTTAGCTAACCTAAGGACTATTTCGTGAAATTGCTAAAGTTTTTTTA
14995240 AAGTTTCAATTGATGTTTTCTTGGAGTATTTATGGTTATTTGGTTAGTTTTGAAGCTTAGATATG
260 AAGTTTCAATTGATGTTTTCTTGGAGTATTTATGGTTATTTGGTTAGTTTTGAAGCTTAGATATG
14995305 TTAATGGACTAGTTTGTAAAGTAAAAGTTGTTATTTT
325 TTAATGGACTAGTTTGTAAAGTAAAAGTTGTTATTTT
14995342 TGAACCTAAT
Statistics
Matches: 721, Mismatches: 5, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
366 187 0.26
367 534 0.74
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (367 bp):
GTAAGTGGGACTTTATTTAGTTCAATAGTTATAATAGTCAGTTGAATAAAGAAACAAAAGGAAAA
ACATTTTCTTTAGCTTGTTCATCATCTTCTTTCACAAAAAAAAGGGGAAAAGCTAGGTTTGGTTA
TTCAAGTTTCATTCCTTGATTAGATAAGTTATTTTAGTTTGTTTCTTGTAATTTTTATGTTTTTG
GAATCCCAAAAGCTTGATTTAGCTAACCTAAGGACTATTTCGTGAAATTGCTAAAGTTTTTTTAA
AGTTTCAATTGATGTTTTCTTGGAGTATTTATGGTTATTTGGTTAGTTTTGAAGCTTAGATATGT
TAATGGACTAGTTTGTAAAGTAAAAGTTGTTATTTTAGATAT
Found at i:15000376 original size:6 final size:6
Alignment explanation
Indices: 15000365--15000389 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15000355 GTACAACAAT
15000365 GTGGCA GTGGCA GTGGCA GTGGCA G
1 GTGGCA GTGGCA GTGGCA GTGGCA G
15000390 AGTTTAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.52, T:0.16
Consensus pattern (6 bp):
GTGGCA
Found at i:15007992 original size:12 final size:12
Alignment explanation
Indices: 15007975--15008005 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
15007965 TATAGGACTT
15007975 AGTTTTCCTTAA
1 AGTTTTCCTTAA
15007987 AGTTTTCCTTAA
1 AGTTTTCCTTAA
15007999 AGTTTTC
1 AGTTTTC
15008006 TTTATGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.16, G:0.10, T:0.52
Consensus pattern (12 bp):
AGTTTTCCTTAA
Found at i:15008397 original size:32 final size:32
Alignment explanation
Indices: 15008356--15008416 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
15008346 TAGAGGTAGT
*
15008356 TCGCGAAACTTTCCATATTTAATGAGTCTACC
1 TCGCGAAACTTACCATATTTAATGAGTCTACC
15008388 TCGCGAAACTTACCATATTTAATGAGTCT
1 TCGCGAAACTTACCATATTTAATGAGTCT
15008417 TACATTGCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (32 bp):
TCGCGAAACTTACCATATTTAATGAGTCTACC
Found at i:15014409 original size:44 final size:41
Alignment explanation
Indices: 15014269--15014424 Score: 154
Period size: 44 Copynumber: 3.7 Consensus size: 41
15014259 AGCACGTACA
* * *
15014269 ATGCCAACGTCCCATAGATGGCCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATC-AA-ATCG
* * *
15014312 ATGCC-ACTGTCCCAGACA-AGTCTTACACGAAATCAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCAAAT-CG
*
15014353 ATGCCAATGTCCCAGACATGGTCTTACATGTAACTCACAGATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAA-TCA-A-ATCG
* *
15014397 ATGCCAACGTCCCATACGTGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
15014425 CGATAACACA
Statistics
Matches: 93, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
40 2 0.02
41 19 0.20
42 26 0.28
43 16 0.17
44 28 0.30
45 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATCG
Found at i:15034180 original size:21 final size:21
Alignment explanation
Indices: 15034143--15034239 Score: 113
Period size: 21 Copynumber: 4.6 Consensus size: 21
15034133 AAGAGCTCCA
* *
15034143 AGCTAAACAGAAACTCATAAG
1 AGCTGAACAGAAGCTCATAAG
* * *
15034164 AGTTTAATAGAAGCTCATAAG
1 AGCTGAACAGAAGCTCATAAG
* *
15034185 AGCTAAACAGAAACTCATAAG
1 AGCTGAACAGAAGCTCATAAG
*
15034206 AGTTGAACAGAAGCTCATAAG
1 AGCTGAACAGAAGCTCATAAG
*
15034227 AGCTGAATAGAAG
1 AGCTGAACAGAAG
15034240 TTCGAAAGAG
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 63 1.00
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (21 bp):
AGCTGAACAGAAGCTCATAAG
Found at i:15034249 original size:42 final size:42
Alignment explanation
Indices: 15034143--15034230 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
15034133 AAGAGCTCCA
* *
15034143 AGCTAAACAGAAACTCATAAGAGTTTAATAGAAGCTCATAAG
1 AGCTAAACAGAAACTCATAAGAGTTGAACAGAAGCTCATAAG
15034185 AGCTAAACAGAAACTCATAAGAGTTGAACAGAAGCTCATAAG
1 AGCTAAACAGAAACTCATAAGAGTTGAACAGAAGCTCATAAG
15034227 AGCT
1 AGCT
15034231 GAATAGAAGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.19
Consensus pattern (42 bp):
AGCTAAACAGAAACTCATAAGAGTTGAACAGAAGCTCATAAG
Found at i:15037739 original size:46 final size:46
Alignment explanation
Indices: 15037687--15037858 Score: 211
Period size: 46 Copynumber: 3.7 Consensus size: 46
15037677 AGTGTGCTCT
* * * *
15037687 CTGATATGAAATGTGTAAGACCATGGTTGAAAGAAACCATCGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
15037733 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
15037779 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
15037825 ATGACA-GAAAATGAGTAAGGCCATAGTTGAAAGA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGA
15037859 CACTATGACA
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 1 0.01
46 110 0.99
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:15038174 original size:23 final size:25
Alignment explanation
Indices: 15038129--15038175 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
15038119 AATAAATATA
*
15038129 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
15038154 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
15038176 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:15042862 original size:40 final size:39
Alignment explanation
Indices: 15042813--15042888 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 39
15042803 AAATCCAATC
*
15042813 ACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATCAT
1 ACCACCACAAAGCATGCGGGACTTT-AGCCCAGATATCAT
* *
15042853 ACCAGCACAAAGCCTGCGGGACTTTAGCCCAGATAT
1 ACCACCACAAAGCATGCGGGACTTTAGCCCAGATAT
15042889 AACGCCAGCA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 10 0.30
40 23 0.70
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.17
Consensus pattern (39 bp):
ACCACCACAAAGCATGCGGGACTTTAGCCCAGATATCAT
Found at i:15042897 original size:39 final size:39
Alignment explanation
Indices: 15042829--15043090 Score: 373
Period size: 39 Copynumber: 6.7 Consensus size: 39
15042819 ACAAAGCATG
* * * *
15042829 CGGGACTTTAAGCCCGGATATCATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* * *
15042869 CGGGACTTTAGCCCAGATATAACGCCAGCACGAATGTCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
15042909 CGGGGCTTACCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
15042948 CGGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
15042987 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
15043026 CAGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
15043065 CGGGACTTAGCCCAGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
15043091 TTATAAAGTC
Statistics
Matches: 201, Mismatches: 20, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 182 0.91
40 19 0.09
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:15043197 original size:28 final size:28
Alignment explanation
Indices: 15043163--15043244 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
15043153 ATTTAATCAT
* *
15043163 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
15043191 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
15043219 TCAATATTTCGTACACTGAGTGCCAT
1 TCAATATTTCGCACACTAAGTGCCAT
15043245 ATTTGATTGC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:15049436 original size:39 final size:39
Alignment explanation
Indices: 15049369--15049552 Score: 289
Period size: 39 Copynumber: 4.7 Consensus size: 39
15049359 ACAAAGCATG
* * *
15049369 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
15049409 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
15049449 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
15049488 CAGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
15049527 CGGGACTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
15049553 TTATAAAGTC
Statistics
Matches: 137, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 116 0.85
40 21 0.15
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:15049658 original size:28 final size:28
Alignment explanation
Indices: 15049625--15049706 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
15049615 ATTTAATCAT
* *
15049625 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
15049653 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
15049681 TCAATATTTCGTACACTGAGTGCCAT
1 TCAATATTTCGCACACTAAGTGCCAT
15049707 ATTTGATTGC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:15052944 original size:46 final size:46
Alignment explanation
Indices: 15052892--15053073 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
15052882 AGTGTGCTCT
* *
15052892 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
15052938 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
15052984 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
15053030 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
15053074 TCACGTCAAT
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 121 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:15061488 original size:22 final size:22
Alignment explanation
Indices: 15061463--15061506 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15061453 TAGTCATATA
15061463 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
15061485 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
15061507 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:15061566 original size:16 final size:17
Alignment explanation
Indices: 15061530--15061566 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
15061520 AATTTTATTT
*
15061530 TAATAATAAATTTTAAA
1 TAATAATAAATTTGAAA
15061547 -AATAAT-AATTTGAAA
1 TAATAATAAATTTGAAA
15061562 TAATA
1 TAATA
15061567 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TAATAATAAATTTGAAA
Found at i:15062131 original size:14 final size:14
Alignment explanation
Indices: 15062112--15062150 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
15062102 CCAAAAAAGT
15062112 AAATCATTTTCCAG
1 AAATCATTTTCCAG
* *
15062126 AAATCATTTTTCGG
1 AAATCATTTTCCAG
*
15062140 AAGTCATTTTC
1 AAATCATTTTC
15062151 AGTAAAACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:15066577 original size:17 final size:17
Alignment explanation
Indices: 15066555--15066599 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
15066545 CACTTGTGTA
15066555 GGGCCCACACGTTTGTG
1 GGGCCCACACGTTTGTG
15066572 GGGCCCACACGTTTGTG
1 GGGCCCACACGTTTGTG
15066589 GGGCCCACACG
1 GGGCCCACACG
15066600 GTTCAATTCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.13, C:0.33, G:0.36, T:0.18
Consensus pattern (17 bp):
GGGCCCACACGTTTGTG
Found at i:15084639 original size:91 final size:93
Alignment explanation
Indices: 15084477--15084646 Score: 281
Period size: 91 Copynumber: 1.8 Consensus size: 93
15084467 CGCCCATAAG
* * *
15084477 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
15084542 ACGAGTT-GGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
15084569 CGAACT-GGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
15084633 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
15084647 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 60 0.83
92 12 0.17
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:15084643 original size:46 final size:46
Alignment explanation
Indices: 15084470--15084643 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
15084460 TGTAACCCGC
* * * *
15084470 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
15084516 CCATGAGTGAACTCGGACTCAACTCAACGAGTT-GGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
15084565 -C-TCA-CGAACT-GGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
15084607 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
15084644 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 2 0.02
45 26 0.25
46 61 0.58
47 2 0.02
48 2 0.02
49 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:15087054 original size:15 final size:15
Alignment explanation
Indices: 15087022--15087085 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
15087012 CAAAGATAAC
15087022 AAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
15087035 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
15087050 GAGAAATCCAGAATA
1 AAGAAATCCAGAATA
15087065 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
15087080 AAGAAA
1 AAGAAA
15087086 CCCAAGATAC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
13 6 0.13
14 3 0.07
15 35 0.78
16 1 0.02
ACGTcount: A:0.61, C:0.12, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:15090061 original size:46 final size:45
Alignment explanation
Indices: 15089994--15090167 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 45
15089984 TGTAACCCGC
*
15089994 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCAT
* *
15090040 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCAT
* * *
15090090 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
*
15090132 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
15090168 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 3 0.03
45 28 0.25
46 34 0.31
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
Found at i:15090159 original size:92 final size:93
Alignment explanation
Indices: 15090001--15090171 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
15089991 CGCCCATAAG
* *
15090001 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
15090066 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
15090094 CGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
15090158 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
15090172 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 44 0.59
93 31 0.41
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:15098540 original size:29 final size:31
Alignment explanation
Indices: 15098507--15098576 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 31
15098497 AATAAATGTA
15098507 TTATGTG-TATAATTACACCA-AA-T-TAAAAT
1 TTATGTGTTA-AATTACA-CATAAGTATAAAAT
*
15098536 TTATGTATTAAATTACACATAAGTATAAAAT
1 TTATGTGTTAAATTACACATAAGTATAAAAT
15098567 TTATGTGTTA
1 TTATGTGTTA
15098577 TTTTGATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 2 0.06
29 15 0.43
30 3 0.09
31 15 0.43
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (31 bp):
TTATGTGTTAAATTACACATAAGTATAAAAT
Found at i:15098974 original size:26 final size:25
Alignment explanation
Indices: 15098941--15098991 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
15098931 TTTGATAACC
* *
15098941 ATTTAATTTTAAAATAATGTAATTA
1 ATTTAATTTAAAAATAATATAATTA
*
15098966 ATTTAAATTTAAAAATATTATAATTA
1 ATTT-AATTTAAAAATAATATAATTA
15098992 GACCTAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (25 bp):
ATTTAATTTAAAAATAATATAATTA
Found at i:15099988 original size:19 final size:19
Alignment explanation
Indices: 15099966--15100005 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
15099956 ATAATAAATT
*
15099966 TTATTATCATACATAATCA
1 TTATTATCATACATAAACA
*
15099985 TTATTATCATCCATAAACA
1 TTATTATCATACATAAACA
15100004 TT
1 TT
15100006 TCTAATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.42
Consensus pattern (19 bp):
TTATTATCATACATAAACA
Found at i:15118379 original size:38 final size:39
Alignment explanation
Indices: 15118290--15118389 Score: 121
Period size: 39 Copynumber: 2.6 Consensus size: 39
15118280 CGGATATAAT
* * * *
15118290 AATTATAATTACCATAATGATAATAATGTTTGACCGAAA
1 AATTATAATTACAATAATTATAATAATATTCGACCGAAA
* ** *
15118329 AATTACAATTACAATAATTATAATAATATTCGATTG-TA
1 AATTATAATTACAATAATTATAATAATATTCGACCGAAA
15118367 AATTATAATTACAATAATTATAA
1 AATTATAATTACAATAATTATAA
15118390 CAAGGATTTC
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
38 23 0.44
39 29 0.56
ACGTcount: A:0.49, C:0.08, G:0.06, T:0.37
Consensus pattern (39 bp):
AATTATAATTACAATAATTATAATAATATTCGACCGAAA
Found at i:15120634 original size:21 final size:21
Alignment explanation
Indices: 15120604--15120644 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15120594 TGCCAATAAA
15120604 TTTGTGGATAAACCATCAGTG
1 TTTGTGGATAAACCATCAGTG
* *
15120625 TTTGTTGATAAACTATCAGT
1 TTTGTGGATAAACCATCAGT
15120645 ACTTCCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (21 bp):
TTTGTGGATAAACCATCAGTG
Found at i:15122851 original size:13 final size:13
Alignment explanation
Indices: 15122833--15122858 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15122823 CTAAATCATA
15122833 ATTTTTGTAAAAT
1 ATTTTTGTAAAAT
15122846 ATTTTTGTAAAAT
1 ATTTTTGTAAAAT
15122859 CGAGAGTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
ATTTTTGTAAAAT
Found at i:15129397 original size:16 final size:16
Alignment explanation
Indices: 15129372--15129412 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
15129362 ATTTCGGTGA
* *
15129372 GTCAAATTTTTTGTGG
1 GTCAATTTTTTTATGG
15129388 GTCAATTTTTTTATGG
1 GTCAATTTTTTTATGG
15129404 GTC-ATTTTT
1 GTCAATTTTT
15129413 ACAATTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.17, C:0.07, G:0.20, T:0.56
Consensus pattern (16 bp):
GTCAATTTTTTTATGG
Done.