Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 56 of 343
Found at i:18162025 original size:20 final size:20
Alignment explanation
Indices: 18161968--18162059 Score: 67
Period size: 20 Copynumber: 4.6 Consensus size: 20
18161958 TGCCCCTGTA
* **
18161968 TGTACTTTGGTACCCCTGGT
1 TGTACTTCGGTACCCCTATT
* ** *
18161988 TGCACTTATGTGCCCCTATT
1 TGTACTTCGGTACCCCTATT
*
18162008 TGTACTTCGGTACCCCTAAT
1 TGTACTTCGGTACCCCTATT
* * *
18162028 TGCACTTCCGTGCCCCTATT
1 TGTACTTCGGTACCCCTATT
* *
18162048 TTTACTCCGGTA
1 TGTACTTCGGTA
18162060 ACTCTAAATC
Statistics
Matches: 52, Mismatches: 20, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.14, C:0.30, G:0.17, T:0.38
Consensus pattern (20 bp):
TGTACTTCGGTACCCCTATT
Found at i:18173003 original size:12 final size:12
Alignment explanation
Indices: 18172986--18173010 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18172976 CCTATACTAG
18172986 CACGCAATTAAC
1 CACGCAATTAAC
18172998 CACGCAATTAAC
1 CACGCAATTAAC
18173010 C
1 C
18173011 CTATTGGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CACGCAATTAAC
Found at i:18178132 original size:40 final size:41
Alignment explanation
Indices: 18178087--18178185 Score: 121
Period size: 41 Copynumber: 2.4 Consensus size: 41
18178077 TAAAACGCAG
18178087 AGCAATAGCGGCGTTTTA-TCAAAAACGAAGCTAAAAA-CAA
1 AGCAATAGCGGCGTTTTAGT-AAAAACGAAGCTAAAAATCAA
* * * *
18178127 AGCAATAGCGGCGTTTTTAGTTAAAACGACGCTAAAAATTAT
1 AGCAATAGCGGCG-TTTTAGTAAAAACGAAGCTAAAAATCAA
*
18178169 AGAAATAGCGGCGTTTT
1 AGCAATAGCGGCGTTTT
18178186 CTGTAAAACG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
40 13 0.25
41 24 0.47
42 14 0.27
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.24
Consensus pattern (41 bp):
AGCAATAGCGGCGTTTTAGTAAAAACGAAGCTAAAAATCAA
Found at i:18178145 original size:41 final size:42
Alignment explanation
Indices: 18178087--18178193 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
18178077 TAAAACGCAG
18178087 AGCAATAGCGGCG-TTTTA-TCAAAAACGAAGCTAAAAA-CAA
1 AGCAATAGCGGCGTTTTTAGT-AAAAACGAAGCTAAAAATCAA
* * * *
18178127 AGCAATAGCGGCGTTTTTAGTTAAAACGACGCTAAAAATTAT
1 AGCAATAGCGGCGTTTTTAGTAAAAACGAAGCTAAAAATCAA
*
18178169 AGAAATAGCGGCGTTTTCT-GTAAAA
1 AGCAATAGCGGCGTTTT-TAGTAAAA
18178194 CGCCGCCAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
40 13 0.23
41 20 0.35
42 23 0.40
43 1 0.02
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (42 bp):
AGCAATAGCGGCGTTTTTAGTAAAAACGAAGCTAAAAATCAA
Found at i:18178194 original size:41 final size:39
Alignment explanation
Indices: 18178090--18178368 Score: 119
Period size: 41 Copynumber: 6.8 Consensus size: 39
18178080 AACGCAGAGC
** * *
18178090 AATAGCGGCGTTTTATCAAAAACGAAGCTAAAAACAAAGC
1 AATAGCGGCGTTTT-TGTAAAACGACGCTAAAAACAAAGA
* *
18178130 AATAGCGGCGTTTTTAGTTAAAACGACGCTAAAAATTATAGA
1 AATAGCGGCGTTTTT-G-TAAAACGACGCTAAAAA-CAAAGA
* * * *
18178172 AATAGCGGCGTTTTCTGTAAAACGCCGCCAAAAAACATAGC
1 AATAGCGGCGTTTT-TGTAAAACGACG-CTAAAAACAAAGA
* * *** * * * * *
18178213 AATAGTGGCATTTTACCAAAAATGCCGCTAAAAGCCAGAGC
1 AATAGCGGCGTTTT-TGTAAAACGACGCTAAAA-ACAAAGA
* * * * *
18178254 ATTAGTGGCGCTTTTGGTAAAACGCCACTAAAAACCAAAGA
1 AATAGCGGCG-TTTTTGTAAAACGACGCTAAAAA-CAAAGA
* * * ** * * *
18178295 ATTAGTGGCGCTTTGTGTAAAACCCCCCTAAAAACCAGAGC
1 AATAGCGGCG-TTTTTGTAAAACGACGCTAAAAA-CAAAGA
*
18178336 ATTAGCGGCGTTTTTGGTAAAACG-CAGCTAAAA
1 AATAGCGGCGTTTTT-GTAAAACGAC-GCTAAAA
18178369 GTCATTTAAC
Statistics
Matches: 189, Mismatches: 40, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
39 1 0.01
40 24 0.13
41 135 0.71
42 28 0.15
43 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (39 bp):
AATAGCGGCGTTTTTGTAAAACGACGCTAAAAACAAAGA
Found at i:18178274 original size:82 final size:82
Alignment explanation
Indices: 18178174--18178360 Score: 189
Period size: 82 Copynumber: 2.3 Consensus size: 82
18178164 ATTATAGAAA
* * * * **
18178174 TAGCGGCG-TTTTCTGTAAAACGCCGCCAAAAAACATAGCAA-TAGTGGCATTTTACCAAAAATG
1 TAGCGGCGCTTTT-GGTAAAACGCCACCAAAAAACAAAG-AATTAGTGGCACTTTACCAAAAACC
* *
18178237 CCGCTAAAAGCCAGAGCAT
64 CCCCTAAAAACCAGAGCAT
* * * * ****
18178256 TAGTGGCGCTTTTGGTAAAACGCCACTAAAAACCAAAGAATTAGTGGCGCTTTGTGTAAAACCCC
1 TAGCGGCGCTTTTGGTAAAACGCCACCAAAAAACAAAGAATTAGTGGCACTTTACCAAAAACCCC
18178321 CCTAAAAACCAGAGCAT
66 CCTAAAAACCAGAGCAT
*
18178338 TAGCGGCGTTTTTGGTAAAACGC
1 TAGCGGCGCTTTTGGTAAAACGC
18178361 AGCTAAAAGT
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
81 2 0.02
82 79 0.93
83 4 0.05
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.22
Consensus pattern (82 bp):
TAGCGGCGCTTTTGGTAAAACGCCACCAAAAAACAAAGAATTAGTGGCACTTTACCAAAAACCCC
CCTAAAAACCAGAGCAT
Found at i:18178431 original size:45 final size:45
Alignment explanation
Indices: 18178375--18178482 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
18178365 AAAAGTCATT
* * *
18178375 TAACCCCTAAAACCCTAAACCCCAAAAAACA-TAAACACTAATCTA
1 TAACCCTTAAAACCCTAAA-CCCAAAAAACACTAAACACAAAACTA
* ** *
18178420 TAACCCTTAAAACACTAAACCCACTAAACACTAAACACAAAAGTA
1 TAACCCTTAAAACCCTAAACCCAAAAAACACTAAACACAAAACTA
*
18178465 TAACCTTTAAAACCCTAA
1 TAACCCTTAAAACCCTAA
18178483 TTAAACCCCA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 9 0.17
45 44 0.83
ACGTcount: A:0.51, C:0.31, G:0.01, T:0.18
Consensus pattern (45 bp):
TAACCCTTAAAACCCTAAACCCAAAAAACACTAAACACAAAACTA
Found at i:18180824 original size:79 final size:82
Alignment explanation
Indices: 18180713--18180897 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
18180703 GCTACTCGTT
* * *
18180713 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
18180776 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
18180793 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAGCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
18180856 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
18180873 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18180898 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:18180897 original size:40 final size:40
Alignment explanation
Indices: 18180694--18180897 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
18180684 CGGAATTTAA
** *
18180694 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
18180734 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
18180774 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
18180813 CCGGA-ATTAGTAGCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
18180853 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
18180893 CCGGA
1 CCGGA
18180898 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:18188012 original size:40 final size:40
Alignment explanation
Indices: 18187938--18188121 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
18187928 GCTACTCGTT
*
18187938 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
18187977 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
18188017 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
18188056 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
18188097 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18188122 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 43 0.35
40 66 0.53
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:18188037 original size:79 final size:80
Alignment explanation
Indices: 18187938--18188121 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 80
18187928 GCTACTCGTT
* * * *
18187938 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
18188001 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* **
18188017 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
18188082 TATGGTCACTTAGCA
66 TATAGTAACTTAGCA
18188097 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
18188122 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 3 0.03
79 67 0.74
80 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:18189199 original size:113 final size:114
Alignment explanation
Indices: 18189001--18189494 Score: 461
Period size: 113 Copynumber: 4.3 Consensus size: 114
18188991 GCTGTCACAA
* * * *
18189001 AAACGCCACAATAGGGTTG-ATTTAGCGGCGCAAGGTTATAAACGCCACTAAGGGTTA-TCTTGT
1 AAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAGG-TATAAACGCCACTAATGGTTATTC-TGT
* *
18189064 TTAGATCAAAACGATGTAGTTTTTATGGATTTTTAGTGGCGTTTT-TGGTT
64 TTATATCAAAACGATGTAGTTTTTATGGATTTTTAGTGGCGTTTTAGGGTT
* *
18189114 AAACGCCACAATAGGTTTG-ATTTAGCGGTGCTAAGGTATAAACGCCACTAATGGTTAATT-TGT
1 AAACGCCGCAATAGGTTTGCATTTAGCGGCGCT-AGGTATAAACGCCACTAATGGTT-ATTCTGT
* * *
18189177 TTATATCAAAACGATGTAG-TTTTATTCGATTATTAGTGGCGTTTTAGGGTA
64 TTATATCAAAACGATGTAGTTTTTA-TGGATTTTTAGTGGCGTTTTAGGGTT
* * *
18189228 AAACGCCGGAATA-GTTTCGCCTTTAGCGGCGCTTGGTGATAAAACGCCACTAAAT-GTTATTCT
1 AAACGCCGCAATAGGTTT-GCATTTAGCGGCGCTAGGT-AT-AAACGCCACT-AATGGTTATTCT
* * * * *
18189291 GTTCATATGAAAACG-TCGTCGTTTTTTTGGATTTTTAGTGGCGTTTTAGGGTG
62 GTTTATATCAAAACGAT-GTAGTTTTTATGGATTTTTAGTGGCGTTTTAGGGTT
* * * * * * * * * *
18189344 AAACGCCGTAATTGATTTGCCTTTAGCGGCACTACGAAAAAACGCCACTAAAGTTTATTCTGTTT
1 AAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAGGTATAAACGCCACTAATGGTTATTCTGTTT
* * * ** *
18189409 ATATCAAAACGGTGTCGTTTTGTTTGTTTTTTTAGTGGCG-TTTA-TGTT
66 ATATCAAAACGATGTAGTTTT-TATGGATTTTTAGTGGCGTTTTAGGGTT
* * *
18189457 AAAACGCCGCAATTGGTTTTCCTTTAGCGGCGCTAGGT
1 -AAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAGGT
18189495 GAAAATGCCG
Statistics
Matches: 320, Mismatches: 43, Indels: 35
0.80 0.11 0.09
Matches are distributed among these distances:
112 5 0.02
113 95 0.30
114 95 0.30
115 36 0.11
116 79 0.25
117 10 0.03
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (114 bp):
AAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAGGTATAAACGCCACTAATGGTTATTCTGTTT
ATATCAAAACGATGTAGTTTTTATGGATTTTTAGTGGCGTTTTAGGGTT
Found at i:18189440 original size:114 final size:114
Alignment explanation
Indices: 18189000--18189491 Score: 421
Period size: 114 Copynumber: 4.3 Consensus size: 114
18188990 GGCTGTCACA
* * * * * * * *
18189000 AAAACGCCACAATAGGGTTG-ATTTAGCGGCGC-AAGGTTATAAACGCCACTAAGGGTTA-TCTT
1 AAAACGCCGCAATAGGTTTGCCTTTAGCGGCGCTAACG-AAAAAACGCCACTAAAGTTTATTC-T
* * *
18189062 GTTTAGATCAAAACGATGTAGTTTTTATGGATTTTTAGTGGCGTTTT-TGGT
64 GTTTATATCAAAACGATGTAGTTTTT-TTGATTTTTAGTGGCGTTTTAGGGT
* * * * * * * * *
18189113 TAAACGCCACAATAGGTTTG-ATTTAGCGGTGCTAAGGTATAAACGCCACTAATGGTTAATT-TG
1 AAAACGCCGCAATAGGTTTGCCTTTAGCGGCGCTAACGAAAAAACGCCACTAA-AGTTTATTCTG
* *
18189176 TTTATATCAAAACGATGTAGTTTTATTCGATTATTAGTGGCGTTTTAGGGT
65 TTTATATCAAAACGATGTAGTTTT-TTTGATTTTTAGTGGCGTTTTAGGGT
* *** *
18189227 AAAACGCCGGAATA-GTTTCGCCTTTAGCGGCGCTTGGTGATAAAACGCCACTAAA-TGTTATTC
1 AAAACGCCGCAATAGGTTT-GCCTTTAGCGGCGC-TAACGAAAAAACGCCACTAAAGT-TTATTC
* * *
18189290 TGTTCATATGAAAACG-TCGTCGTTTTTTTGGATTTTTAGTGGCGTTTTAGGGT
63 TGTTTATATCAAAACGAT-GTAGTTTTTTT-GATTTTTAGTGGCGTTTTAGGGT
* * * * *
18189343 GAAACGCCGTAATTGATTTGCCTTTAGCGGCACT-ACGAAAAAACGCCACTAAAGTTTATTCTGT
1 AAAACGCCGCAATAGGTTTGCCTTTAGCGGCGCTAACGAAAAAACGCCACTAAAGTTTATTCTGT
* * * * *
18189407 TTATATCAAAACGGTGTCGTTTTGTTTGTTTTTTTAGTGGCG-TTTATGTT
66 TTATATCAAAACGATGTAGTTTT-TTTG-ATTTTTAGTGGCGTTTTAGGGT
* *
18189457 AAAACGCCGCAATTGGTTTTCCTTTAGCGGCGCTA
1 AAAACGCCGCAATAGGTTTGCCTTTAGCGGCGCTA
18189492 GGTGAAAATG
Statistics
Matches: 316, Mismatches: 45, Indels: 34
0.80 0.11 0.09
Matches are distributed among these distances:
113 91 0.29
114 105 0.33
115 36 0.11
116 81 0.26
117 3 0.01
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (114 bp):
AAAACGCCGCAATAGGTTTGCCTTTAGCGGCGCTAACGAAAAAACGCCACTAAAGTTTATTCTGT
TTATATCAAAACGATGTAGTTTTTTTGATTTTTAGTGGCGTTTTAGGGT
Found at i:18189462 original size:230 final size:228
Alignment explanation
Indices: 18189021--18189496 Score: 523
Period size: 230 Copynumber: 2.1 Consensus size: 228
18189011 ATAGGGTTGA
* * * *
18189021 TTTAGCGGCGCAAGGTTATAAACGCCACTAAGGGTTATCTTGTTTAGATCAAAACGATGTAGTTT
1 TTTAGCGGCGCTAGGTGATAAACGCCACTAAAGGTTATCTTGTTCAGATCAAAACGATGTAGTTT
* * * ** * *
18189086 TTATGGATTTTTAGTGGCGTTTTTGGTTAAACGCCACAATAGGTTTGATTTAGCGGTGCTAAGGT
66 TTATGGATTTTTAGTGGCGTTTTGGGTGAAACGCCACAATAGATTTGATTTAGCGGCACTAACGA
* *
18189151 ATAAACGCCACTAATGGTTAATTTGTTTATATCAAAACGATGTAGTTTTATTCGATTATTAGTGG
131 AAAAACGCCACTAATAGTTAATTTGTTTATATCAAAACGATGTAGTTTTATTCGATTATTAGTGG
*
18189216 CGTTTTAGGGTAAAACGCCGGAA-TAGTTTCGCC
196 CGTTTTAGGGTAAAACGCCGCAATTAGTTT-GCC
* * * * *
18189249 TTTAGCGGCGCTTGGTGATAAAACGCCACTAAATGTTAT-TCTGTTCATATGAAAACG-TCGTCG
1 TTTAGCGGCGCTAGGTGAT-AAACGCCACTAAAGGTTATCT-TGTTCAGATCAAAACGAT-GTAG
* ** * *
18189312 TTTTTTTGGATTTTTAGTGGCGTTTTAGGGTGAAACGCCGTAATTGATTTGCCTTTAGCGGCACT
63 TTTTTATGGATTTTTAGTGGCGTTTT-GGGTGAAACGCCACAATAGATTTG-ATTTAGCGGCACT
* * * * * * *
18189377 -ACGAAAAAACGCCACTAA-AGTTTATTCTGTTTATATCAAAACGGTGTCGTTTTGTTTGTTTTT
126 AACGAAAAAACGCCACTAATAGTTAATT-TGTTTATATCAAAACGATGTAGTTTTATTCG-ATTA
* * * *
18189440 TTAGTGGCG-TTTATGTTAAAACGCCGCAATTGGTTTTCC
189 TTAGTGGCGTTTTAGGGTAAAACGCCGCAATTAGTTTGCC
18189479 TTTAGCGGCGCTAGGTGA
1 TTTAGCGGCGCTAGGTGA
18189497 AAATGCCGCA
Statistics
Matches: 204, Mismatches: 36, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
228 18 0.09
229 64 0.31
230 96 0.47
231 26 0.13
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (228 bp):
TTTAGCGGCGCTAGGTGATAAACGCCACTAAAGGTTATCTTGTTCAGATCAAAACGATGTAGTTT
TTATGGATTTTTAGTGGCGTTTTGGGTGAAACGCCACAATAGATTTGATTTAGCGGCACTAACGA
AAAAACGCCACTAATAGTTAATTTGTTTATATCAAAACGATGTAGTTTTATTCGATTATTAGTGG
CGTTTTAGGGTAAAACGCCGCAATTAGTTTGCC
Found at i:18189664 original size:58 final size:59
Alignment explanation
Indices: 18189572--18189700 Score: 161
Period size: 58 Copynumber: 2.2 Consensus size: 59
18189562 ACACCGAGTT
* * * * ** *
18189572 CCCCCTTCTCCATGGTTTATTTCCCCTATTTTCCCTTCTTCGAATCCCTAAAATAATCA
1 CCCCCTTCTCCCTAGTTTATTCCCCCCATTTTCCCTAATTCGAAACCCTAAAATAATCA
* *
18189631 CCCCCTTCTCCCTAGTTTATTCCCCCCA-TTTCCCTAATTTGAAACCCTAAAATAATTA
1 CCCCCTTCTCCCTAGTTTATTCCCCCCATTTTCCCTAATTCGAAACCCTAAAATAATCA
*
18189689 CCCCTTTCTCCC
1 CCCCCTTCTCCC
18189701 CAATTTGAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
58 36 0.60
59 24 0.40
ACGTcount: A:0.21, C:0.39, G:0.04, T:0.36
Consensus pattern (59 bp):
CCCCCTTCTCCCTAGTTTATTCCCCCCATTTTCCCTAATTCGAAACCCTAAAATAATCA
Found at i:18192080 original size:9 final size:9
Alignment explanation
Indices: 18192068--18192098 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
18192058 ATATCATATA
18192068 ATAACTTAC
1 ATAACTTAC
18192077 ATAACTTAC
1 ATAACTTAC
*
18192086 AAAACTTAC
1 ATAACTTAC
18192095 ATAA
1 ATAA
18192099 TACATAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Found at i:18192119 original size:13 final size:13
Alignment explanation
Indices: 18192101--18192130 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
18192091 TTACATAATA
18192101 CATAAATATATAT
1 CATAAATATATAT
18192114 CATAAATATATAT
1 CATAAATATATAT
18192127 CATA
1 CATA
18192131 TCATAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (13 bp):
CATAAATATATAT
Found at i:18192137 original size:56 final size:56
Alignment explanation
Indices: 18192076--18192286 Score: 352
Period size: 56 Copynumber: 3.8 Consensus size: 56
18192066 TAATAACTTA
*
18192076 CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATAT
1 CATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATAT
* * *
18192132 CATAACTTACACAACTAACATAATACATAAATATATTTCATAAATATGTATCATAT
1 CATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATAT
*
18192188 CATAACTTACACAACTTACATAATAC-TCCAAATATATATCATAAATATATATCTTAT
1 CATAACTTACACAACTTACATAATACAT--AAATATATATCATAAATATATATCATAT
18192245 CATAACTTACACAACTTACATAATACATAAATATATATCATA
1 CATAACTTACACAACTTACATAATACATAAATATATATCATA
18192287 TCATAACTTA
Statistics
Matches: 144, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
55 1 0.01
56 91 0.63
57 51 0.35
58 1 0.01
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (56 bp):
CATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATAT
Found at i:18192246 original size:113 final size:112
Alignment explanation
Indices: 18192076--18192286 Score: 361
Period size: 113 Copynumber: 1.9 Consensus size: 112
18192066 TAATAACTTA
18192076 CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATCATAACTTA
1 CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATCATAACTTA
*
18192141 CACAACTAACATAATACATAAATATATTTCATAAATATGTATCATAT
66 CACAACTAACATAATACATAAATATATATCATAAATATGTATCATAT
* *
18192188 CATAACTTACACAACTTACATAATAC-TCCAAATATATATCATAAATATATATCTTATCATAACT
1 CATAACTTACAAAACTTACATAATACAT--AAATATATATCATAAATATATATCATATCATAACT
*
18192252 TACACAACTTACATAATACATAAATATATATCATA
64 TACACAACTAACATAATACATAAATATATATCATA
18192287 TCATAACTTA
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
111 1 0.01
112 25 0.27
113 67 0.72
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (112 bp):
CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATCATAACTTA
CACAACTAACATAATACATAAATATATATCATAAATATGTATCATAT
Found at i:18192275 original size:43 final size:43
Alignment explanation
Indices: 18192227--18192310 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
18192217 AAATATATAT
*
18192227 CATAAATATATATCTTATCATAACTTACACAACTTACATAATA
1 CATAAATATATATCATATCATAACTTACACAACTTACATAATA
* * *
18192270 CATAAATATATATCATATCATAACTTATATACCTTACATAA
1 CATAAATATATATCATATCATAACTTACACAACTTACATAA
18192311 ATGTATATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (43 bp):
CATAAATATATATCATATCATAACTTACACAACTTACATAATA
Found at i:18192309 original size:36 final size:36
Alignment explanation
Indices: 18192257--18192343 Score: 124
Period size: 36 Copynumber: 2.5 Consensus size: 36
18192247 TAACTTACAC
*
18192257 AACTTACATAA--TACATAAATATATATCATATCAT
1 AACTTACATAACTTACATAAATATATATCATAACAT
* * *
18192291 AACTTATATACCTTACATAAATGTATATCATAACAT
1 AACTTACATAACTTACATAAATATATATCATAACAT
18192327 AACTTACATAACTTACA
1 AACTTACATAACTTACA
18192344 AAGCTTACTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 9 0.20
36 36 0.80
ACGTcount: A:0.47, C:0.17, G:0.01, T:0.34
Consensus pattern (36 bp):
AACTTACATAACTTACATAAATATATATCATAACAT
Found at i:18192323 original size:113 final size:107
Alignment explanation
Indices: 18192055--18192307 Score: 346
Period size: 113 Copynumber: 2.3 Consensus size: 107
18192045 TAATATTTAT
*
18192055 TATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCATAAA
1 TATATATCATAT-ATAACTTATATAACTTACAAAACTTACATAATACATAAATATATATCATAAA
18192120 TATATATCATATCATAACTTACACAACTAACATAATACATAAA
65 TATATATCATATCATAACTTACACAACTAACATAATACATAAA
* * * *
18192163 TATATTTCATAAATATGTATCATATCATAACTTACACAACTTACATAATAC-TCCAAATATATAT
1 TATATATCAT--ATA--TAACTTAT-ATAACTTACAAAACTTACATAATACAT--AAATATATAT
* *
18192227 CATAAATATATATCTTATCATAACTTACACAACTTACATAATACATAAA
59 CATAAATATATATCATATCATAACTTACACAACTAACATAATACATAAA
*
18192276 TATATATCATATCATAACTTATATACCTTACA
1 TATATATCATAT-ATAACTTATATAACTTACA
18192308 TAAATGTATA
Statistics
Matches: 126, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
108 9 0.07
109 10 0.08
110 8 0.06
111 8 0.06
112 25 0.20
113 66 0.52
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (107 bp):
TATATATCATATATAACTTATATAACTTACAAAACTTACATAATACATAAATATATATCATAAAT
ATATATCATATCATAACTTACACAACTAACATAATACATAAA
Found at i:18192337 original size:9 final size:9
Alignment explanation
Indices: 18192240--18192360 Score: 63
Period size: 9 Copynumber: 13.6 Consensus size: 9
18192230 AAATATATAT
18192240 CTTATCATAA
1 CTTA-CATAA
*
18192250 CTTACACAA
1 CTTACATAA
18192259 CTTACATAA
1 CTTACATAA
18192268 --TACATAA
1 CTTACATAA
* * *
18192275 -ATATATAT
1 CTTACATAA
*
18192283 CATATCATAA
1 CTTA-CATAA
* *
18192293 CTTATATAC
1 CTTACATAA
18192302 CTTACATAA
1 CTTACATAA
* * *
18192311 ATGTATATCA
1 CT-TACATAA
*
18192321 -TAACATAA
1 CTTACATAA
18192329 CTTACATAA
1 CTTACATAA
18192338 CTTACA-AA
1 CTTACATAA
*
18192346 GCTTACTTAA
1 -CTTACATAA
18192356 CTTAC
1 CTTAC
18192361 GTAATATATA
Statistics
Matches: 85, Mismatches: 19, Indels: 15
0.71 0.16 0.13
Matches are distributed among these distances:
7 7 0.08
8 11 0.13
9 50 0.59
10 17 0.20
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.35
Consensus pattern (9 bp):
CTTACATAA
Found at i:18197878 original size:15 final size:16
Alignment explanation
Indices: 18197853--18197899 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 16
18197843 GCAACAACTT
18197853 AGAGCGGAGGCAGCAG-
1 AGAG-GGAGGCAGCAGC
18197869 AGAGGGAGGCAGCAGC
1 AGAGGGAGGCAGCAGC
18197885 AGCGAGGGAGGCAGC
1 A--GAGGGAGGCAGC
18197900 GACAGCAGCG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 11 0.39
16 5 0.18
18 12 0.43
ACGTcount: A:0.30, C:0.19, G:0.51, T:0.00
Consensus pattern (16 bp):
AGAGGGAGGCAGCAGC
Found at i:18197905 original size:18 final size:18
Alignment explanation
Indices: 18197862--18197916 Score: 74
Period size: 18 Copynumber: 2.9 Consensus size: 18
18197852 TAGAGCGGAG
*
18197862 GCAGCAGAGAGGGAGGCA
1 GCAGCAGCGAGGGAGGCA
18197880 GCAGCAGCGAGGGAGGCA
1 GCAGCAGCGAGGGAGGCA
18197898 GCGACAGCAGCGAGGGAGG
1 --G-CAGCAGCGAGGGAGG
18197917 TAGAGACAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
18 17 0.52
20 1 0.03
21 15 0.45
ACGTcount: A:0.29, C:0.20, G:0.51, T:0.00
Consensus pattern (18 bp):
GCAGCAGCGAGGGAGGCA
Found at i:18197905 original size:21 final size:20
Alignment explanation
Indices: 18197863--18197931 Score: 88
Period size: 21 Copynumber: 3.5 Consensus size: 20
18197853 AGAGCGGAGG
*
18197863 CAGCAGAGAGGGAGGCA-G-
1 CAGCAGCGAGGGAGGCAGGA
18197881 CAGCAGCGAGGGAGGCAGCGA
1 CAGCAGCGAGGGAGGCAG-GA
*
18197902 CAGCAGCGAGGGAGGTAGAGA
1 CAGCAGCGAGGGAGGCAG-GA
18197923 CAGCAGCGA
1 CAGCAGCGA
18197932 TGGCAGTAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
18 16 0.36
20 1 0.02
21 28 0.62
ACGTcount: A:0.32, C:0.20, G:0.46, T:0.01
Consensus pattern (20 bp):
CAGCAGCGAGGGAGGCAGGA
Found at i:18197937 original size:39 final size:39
Alignment explanation
Indices: 18197863--18197937 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
18197853 AGAGCGGAGG
*
18197863 CAGCAGAGAGGGAGGCAGCAGCAGCGAGGGAGGCAGCGA
1 CAGCAGAGAGGGAGGCAGCAGCAGCGAGCGAGGCAGCGA
* *
18197902 CAGCAGCGAGGGAGGTAG-AGACAGC-AGCGATGGCAG
1 CAGCAGAGAGGGAGGCAGCAG-CAGCGAGCGA-GGCAG
18197938 TAGAGCAGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
38 6 0.19
39 25 0.81
ACGTcount: A:0.31, C:0.20, G:0.47, T:0.03
Consensus pattern (39 bp):
CAGCAGAGAGGGAGGCAGCAGCAGCGAGCGAGGCAGCGA
Found at i:18197940 original size:21 final size:21
Alignment explanation
Indices: 18197881--18197942 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
18197871 AGGGAGGCAG
* * *
18197881 CAGCAGCGAGGGAGGCAGCGA
1 CAGCAGCGAGGCAGGTAGAGA
*
18197902 CAGCAGCGAGGGAGGTAGAGA
1 CAGCAGCGAGGCAGGTAGAGA
18197923 CAGCAGCGATGGCA-GTAGAG
1 CAGCAGCGA-GGCAGGTAGAG
18197943 CAGAGCAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 34 0.92
22 3 0.08
ACGTcount: A:0.31, C:0.19, G:0.45, T:0.05
Consensus pattern (21 bp):
CAGCAGCGAGGCAGGTAGAGA
Found at i:18198385 original size:43 final size:42
Alignment explanation
Indices: 18198299--18198389 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 42
18198289 TCTGTCAAAA
*
18198299 TTAGCGGCGTTTGCCAAAAAAAGCCGCTAAAAGCCGTGACTT
1 TTAGCGGCGTTTGCCAAAAAAAGCCGCTAAAAGCCATGACTT
* * * * * *
18198341 TTAGTGGCGCTTTTCCAACAAACGCCGCTAAAGGCCATGGCTT
1 TTAGCGGCG-TTTGCCAAAAAAAGCCGCTAAAAGCCATGACTT
18198384 TTAGCG
1 TTAGCG
18198390 TTTTTTTTAA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 8 0.20
43 32 0.80
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (42 bp):
TTAGCGGCGTTTGCCAAAAAAAGCCGCTAAAAGCCATGACTT
Found at i:18206341 original size:38 final size:38
Alignment explanation
Indices: 18206299--18206375 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
18206289 CTAGAGTCCT
18206299 AGTTTAATTTCATCCATTTGGATTATTCCTAAACGCCA
1 AGTTTAATTTCATCCATTTGGATTATTCCTAAACGCCA
18206337 AGTTTAATTTCATCCATTTGGATTATTCCTAAACGCCA
1 AGTTTAATTTCATCCATTTGGATTATTCCTAAACGCCA
18206375 A
1 A
18206376 ATTTTGTGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (38 bp):
AGTTTAATTTCATCCATTTGGATTATTCCTAAACGCCA
Found at i:18209843 original size:4 final size:4
Alignment explanation
Indices: 18209834--18209894 Score: 113
Period size: 4 Copynumber: 15.2 Consensus size: 4
18209824 TCATATATAG
*
18209834 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AAAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
18209882 AGAT AGAT AGAT A
1 AGAT AGAT AGAT A
18209895 CAAGTGAGTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 55 1.00
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.25
Consensus pattern (4 bp):
AGAT
Found at i:18209981 original size:16 final size:16
Alignment explanation
Indices: 18209948--18209981 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
18209938 TTGTTGCTGT
* *
18209948 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
18209964 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
18209980 AA
1 AA
18209982 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:18212807 original size:21 final size:21
Alignment explanation
Indices: 18212781--18212821 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
18212771 AGACGAGCAA
* *
18212781 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
18212802 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
18212822 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:18216429 original size:13 final size:13
Alignment explanation
Indices: 18216411--18216436 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18216401 ATCCCAAATT
18216411 TAAAAAATAAAAA
1 TAAAAAATAAAAA
18216424 TAAAAAATAAAAA
1 TAAAAAATAAAAA
18216437 CATGAAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:18223255 original size:21 final size:21
Alignment explanation
Indices: 18223229--18223269 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
18223219 TAACGGAATC
18223229 GCTGATGTGACAAGTTAACTA
1 GCTGATGTGACAAGTTAACTA
* *
18223250 GCTGATGTGGCCAGTTAACT
1 GCTGATGTGACAAGTTAACT
18223270 TGTCACGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (21 bp):
GCTGATGTGACAAGTTAACTA
Found at i:18227121 original size:18 final size:16
Alignment explanation
Indices: 18227092--18227126 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
18227082 TGTATTTGAT
18227092 AAATTAAATAAATTTA
1 AAATTAAATAAATTTA
18227108 AAATTAACACTAAATTTA
1 AAATTAA-A-TAAATTTA
18227126 A
1 A
18227127 TCTATTAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 1 0.06
18 9 0.53
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATTAAATAAATTTA
Found at i:18232779 original size:16 final size:16
Alignment explanation
Indices: 18232760--18232794 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
18232750 TACTTTTATA
*
18232760 TATATAGTATTATTTT
1 TATATAGTATTATATT
*
18232776 TATATATTATTATATT
1 TATATAGTATTATATT
18232792 TAT
1 TAT
18232795 TATTTTCACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (16 bp):
TATATAGTATTATATT
Found at i:18232873 original size:16 final size:18
Alignment explanation
Indices: 18232852--18232886 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
18232842 AAACTTGGTA
18232852 TACATA-TGTC-TTTTTG
1 TACATATTGTCATTTTTG
18232868 TACATATTGTCATTTTTG
1 TACATATTGTCATTTTTG
18232886 T
1 T
18232887 TATATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 4 0.24
18 7 0.41
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57
Consensus pattern (18 bp):
TACATATTGTCATTTTTG
Found at i:18244709 original size:50 final size:47
Alignment explanation
Indices: 18244632--18244730 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 47
18244622 TGACATATAC
18244632 AGGTACTCCAGTAGAGCGAGGATGTGATGATAGCTGTACTGAATCAA
1 AGGTACTCCAGTAGAGCGAGGATGTGATGATAGCTGTACTGAATCAA
18244679 AGGTACTCCAGCTAGAGCAAGAGGATGTGATGATAGCTGTACTGAATCAA
1 AGGTACTCCAG-TAGAGC--GAGGATGTGATGATAGCTGTACTGAATCAA
18244729 AG
1 AG
18244731 AAAAGACACC
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 11 0.22
48 6 0.12
50 32 0.65
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.22
Consensus pattern (47 bp):
AGGTACTCCAGTAGAGCGAGGATGTGATGATAGCTGTACTGAATCAA
Found at i:18244985 original size:13 final size:14
Alignment explanation
Indices: 18244955--18244989 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
18244945 CGCTGAGGTA
18244955 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
18244968 TTTTTCAATTTCTG
1 TTTTTCAATTTCTG
18244982 TTTTTCAA
1 TTTTTCAA
18244990 AAATTCAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.24
14 16 0.76
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.66
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:18244986 original size:107 final size:106
Alignment explanation
Indices: 18244793--18244986 Score: 282
Period size: 107 Copynumber: 1.8 Consensus size: 106
18244783 TTTTTGTTTT
* * * * *
18244793 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAA
1 AAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCCGAGGTATTTTCAAA
18244858 TTCTGTTTTTAATTTCTTTTTTTTTCAATTTTTGTGTTTCAA
65 TTCTGTTTTTAATTTCTTTTTTTTTCAATTTTTGTGTTTCAA
* * *
18244900 AAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTATTTTTAATT
1 AAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCCGAGGTATTTTCAAAT
*
18244964 TCTGTTTTTCAATTTCTGTTTTT
66 TCTGTTTTT-AATTTCTTTTTTT
18244987 CAAAAATTCA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
105 26 0.34
106 12 0.16
107 39 0.51
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.41
Consensus pattern (106 bp):
AAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCCGAGGTATTTTCAAAT
TCTGTTTTTAATTTCTTTTTTTTTCAATTTTTGTGTTTCAA
Found at i:18245016 original size:88 final size:90
Alignment explanation
Indices: 18244863--18245047 Score: 232
Period size: 88 Copynumber: 2.0 Consensus size: 90
18244853 TCAAATTCTG
* *
18244863 TTTTTAATTTCTTTTTTTTTCAATTTTTGTGTTTCAAAAAAAATCAAATCATATTGCGAGAGGTG
1 TTTTTAATTTC-TTGTTTTTCAATTTCTGTGTTTC-AAAAAAATCAAATCATATTGCGAGAGGTG
18244928 AGTTGAGCCTCAG-GACACGCTGAGGTA
64 AGTT-AGCCTCAGCGACACGCTGAGGTA
* * * *
18244955 TTTTTAATTTC-TGTTTTTCAATTTCTGTTTTTC-AAAAATTCAACTCATATTGTGAGAGGTGAG
1 TTTTTAATTTCTTGTTTTTCAATTTCTGTGTTTCAAAAAAATCAAATCATATTGCGAGAGGTGAG
** *
18245018 TTAGCCTTGGCTGACATGCTGAGGTA
66 TTAGCCTCAGC-GACACGCTGAGGTA
18245044 TTTT
1 TTTT
18245048 CTGTTCGTCA
Statistics
Matches: 82, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
87 6 0.07
88 29 0.35
89 17 0.21
90 19 0.23
92 11 0.13
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.43
Consensus pattern (90 bp):
TTTTTAATTTCTTGTTTTTCAATTTCTGTGTTTCAAAAAAATCAAATCATATTGCGAGAGGTGAG
TTAGCCTCAGCGACACGCTGAGGTA
Found at i:18245105 original size:69 final size:69
Alignment explanation
Indices: 18244976--18245117 Score: 171
Period size: 69 Copynumber: 2.1 Consensus size: 69
18244966 TGTTTTTCAA
** * * * * *
18244976 TTTCTGTTTTTCAAAAATTCAACTCATATTGTGAGAGGTGAGTTAGCCTTGGCTGACATGCTGAG
1 TTTCTGTTCGTCAAAAATTCAACTCATATTGCGAAAGGTGAGTTAGCCTAGGCTCACATGCCGAG
18245041 GTAT
66 GTAT
*
18245045 TTTCTGTTCGTCAAAAA-TCAACTCATATTGCGAAAGGTGAGTTGAGTCTCAGGC-CACATGCCG
1 TTTCTGTTCGTCAAAAATTCAACTCATATTGCGAAAGGTGAGTT-AGCCT-AGGCTCACATGCCG
*
18245108 AGGTCT
64 AGGTAT
18245114 TTTC
1 TTTC
18245118 AAATTCTGTT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
68 24 0.39
69 35 0.56
70 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (69 bp):
TTTCTGTTCGTCAAAAATTCAACTCATATTGCGAAAGGTGAGTTAGCCTAGGCTCACATGCCGAG
GTAT
Found at i:18245173 original size:158 final size:159
Alignment explanation
Indices: 18244900--18245354 Score: 475
Period size: 148 Copynumber: 2.9 Consensus size: 159
18244890 TGTGTTTCAA
* * * * *
18244900 AAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAAATT
* * * **
18244965 CTGTTTTTCAATTTCTGTTTTTCAAAAATTCAACTCATATTGTGAGAGGTGAGTT-AGCCTTGGC
66 CTGTTTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-
* *
18245029 TGACATGCTGAGGTATTTTC-TGTT-C-GTC
130 -GACACGCTGAAGTATTTTCATGTTGCTGTC
* * *
18245057 -AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGTCTCAGGCCACATGCCGAGGTCTTTTCAAA
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGG--ACACGCCGAGGTATTTTCAAA
*
18245121 TTCTGTTTTT-AATTTTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
64 TTCTGTTTTTCAATTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
18245185 AGGACACGCTGAAGTATTTTCAATTTTTGCTTTTC
128 AGGACACGCTGAAGTATTTTC-A-TGTTGC-TGTC
**
18245220 AAAAAATCAACTCATATTGC-AAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTATTTTC-AA-
1 AAAAAATCAACTCATATTGCGAA-AGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAAAT
* *
18245282 ------TTTC---TGC---TTTTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG
65 TCTGTTTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
18245335 GACACGCTGAGGTATTTTCA
130 GACACGCTGAAGTATTTTCA
18245355 ATTTTTGTTT
Statistics
Matches: 258, Mismatches: 27, Indels: 36
0.80 0.08 0.11
Matches are distributed among these distances:
147 1 0.00
148 58 0.22
149 5 0.02
152 1 0.00
154 3 0.01
156 38 0.15
157 29 0.11
158 56 0.22
159 6 0.02
160 3 0.01
161 3 0.01
162 14 0.05
163 4 0.02
164 37 0.14
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (159 bp):
AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAAATT
CTGTTTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
ACACGCTGAAGTATTTTCATGTTGCTGTC
Found at i:18245253 original size:74 final size:74
Alignment explanation
Indices: 18245126--18245369 Score: 391
Period size: 74 Copynumber: 3.3 Consensus size: 74
18245116 TCAAATTCTG
* **
18245126 TTTTTAATTTTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTTTGCTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
18245191 CGCTGAAGTA
65 CGCTGAAGTA
*
18245201 TTTTCAATTTTTGCTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTTTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
18245266 GCT-AAGGTA
66 GCTGAA-GTA
* *
18245275 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTTTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
18245340 GCTGAGGTA
66 GCTGAAGTA
*
18245349 TTTTCAATTTTTGTTTTTCAA
1 TTTTCAATTTTTGCTTTTCAA
18245370 TTTCTGCTTT
Statistics
Matches: 157, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
73 2 0.01
74 138 0.88
75 17 0.11
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (74 bp):
TTTTCAATTTTTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAAGTA
Found at i:18245388 original size:162 final size:161
Alignment explanation
Indices: 18245201--18245654 Score: 626
Period size: 162 Copynumber: 2.8 Consensus size: 161
18245191 CGCTGAAGTA
*
18245201 TTTTCAATTTTTGCTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTATGCTTTT-AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACAC
*
18245266 GCTAAGGTATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCC
65 GCTAAGGTATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCC
* * *
18245331 TCAGGACACGCTGAGGTATTTTCAATTTTTGT
130 TCAGGACACGCTGAGGTATTTTCAACTTCTGC
* * * *
18245363 TTTTCAATTTCTGCTTTTAAAAAAATCAACTTATATTGCAAGAAGTGAGTTGAGCCTCAGGGCAC
1 TTTTCAATTTATGCTTTT-AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACAC
* *
18245428 GCTGAA-GAATTTTCAATTTCTACTTTTCAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGC
65 GCT-AAGGTATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGC
18245492 CTCAGGACACGCTGAGGTATTTTCAACTTCTGC
129 CTCAGGACACGCTGAGGTATTTTCAACTTCTGC
* * * * *
18245525 TATTCAATTTATG-TGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGGTCAC
1 TTTTCAATTTATGCT-TTTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG--AC
** * * *
18245589 ACGCCGAGGTATTTCCAATTT-TAGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
63 ACGCTAAGGTATTTTCAATTTCT-GCTTTTC-AAAAAATCAACTCATATTGAGAGAGGTGAGTTG
18245653 AG
126 AG
18245655 TCCTAGGTCA
Statistics
Matches: 258, Mismatches: 27, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
161 37 0.14
162 164 0.64
163 23 0.09
164 34 0.13
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (161 bp):
TTTTCAATTTATGCTTTTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACG
CTAAGGTATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCT
CAGGACACGCTGAGGTATTTTCAACTTCTGC
Found at i:18245429 original size:88 final size:88
Alignment explanation
Indices: 18245275--18245446 Score: 272
Period size: 88 Copynumber: 2.0 Consensus size: 88
18245265 CGCTAAGGTA
* ** *
18245275 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGCTTTTAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACAC
* *
18245340 GCTGAGGTATTTTCAATTTTTGT
66 GCTGAAGAATTTTCAATTTTTGT
* *
18245363 TTTTCAATTTCTGCTTTTAAAAAAATCAACTTATATTGCAAGAAGTGAGTTGAGCCTCAGGGCAC
1 TTTTCAATTTCTGCTTTTAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACAC
18245428 GCTGAAGAATTTTCAATTT
66 GCTGAAGAATTTTCAATTT
18245447 CTACTTTTCA
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (88 bp):
TTTTCAATTTCTGCTTTTAAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACAC
GCTGAAGAATTTTCAATTTTTGT
Found at i:18245431 original size:236 final size:235
Alignment explanation
Indices: 18244969--18245531 Score: 732
Period size: 236 Copynumber: 2.4 Consensus size: 235
18244959 TAATTTCTGT
* * * **
18244969 TTTTCAATTTCTGTTTTTCAAAAATTCAACTCATATTGTGAGAGGTGAGTT-AGCCTTGGCTGAC
1 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTG-AAGAGGTGAGTTGAGCCTCAG--GAC
*
18245033 ATGCTGAGGTATTTTC--TGTTC-G---TC-AAAAATCAACTCATATTGCGAAAGGTGAGTTGAG
63 ACGCTGAGGTATTTTCAAT-TTCTGCTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAG
* * * * *
18245091 TCTCAGGCCACATGCCGAGGTCTTTTCAAATTCTGTTTTTAATTTTTATTTTTCAAAAAAATCAA
127 CCTCAGG-CACACGCCGAGGTATTTTCAAATTCTGTTTTTAATTTCTACTTTTCAAAAAAATCAA
* * *
18245156 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTA
191 CTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACACGCTGAAGAA
*
18245201 TTTTCAATTTTTGCTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTG-AAGAGGTGAGTTGAGCCTCAGGACAC
* * *
18245266 GCTAAGGTATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCC
65 GCTGAGGTATTTTCAATTTCTGC-TTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCC
* * * *
18245331 TCAGG-ACACGCTGAGGTATTTTCAATTTTTGTTTTTCAATTTCTGCTTTT-AAAAAAATCAACT
129 TCAGGCACACGCCGAGGTATTTTCAAATTCTGTTTTT-AATTTCTACTTTTCAAAAAAATCAACT
* *
18245394 TATATTGCAAGAAGTGAGTTGAGCCTCAGGGCACGCTGAAGAA
193 CATATTGCAAGAAGTGAGTTGAGCCTCAGGACACGCTGAAGAA
*
18245437 TTTTCAATTTCTACTTTTCAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGA-AGAGGTGAGTTGAGCCTCAGGACAC
*
18245502 GCTGAGGTATTTTCAACTTCTGCTATTCAA
65 GCTGAGGTATTTTCAATTTCTGCT-TTCAA
18245532 TTTATGTGTT
Statistics
Matches: 290, Mismatches: 29, Indels: 20
0.86 0.09 0.06
Matches are distributed among these distances:
231 17 0.06
232 49 0.17
233 8 0.03
235 2 0.01
236 164 0.57
237 12 0.04
238 38 0.13
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (235 bp):
TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGAAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTATTTTCAATTTCTGCTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTC
AGGCACACGCCGAGGTATTTTCAAATTCTGTTTTTAATTTCTACTTTTCAAAAAAATCAACTCAT
ATTGCAAGAAGTGAGTTGAGCCTCAGGACACGCTGAAGAA
Found at i:18245485 original size:74 final size:74
Alignment explanation
Indices: 18245363--18245531 Score: 241
Period size: 74 Copynumber: 2.3 Consensus size: 74
18245353 CAATTTTTGT
* * *
18245363 TTTTCAATTTCTGCTTTTAAAAAAATCAACTTATATTGCAAGAAGTGAGTTGAGCCTCAGGGCAC
1 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACAC
18245428 GCTGAAGAA
66 GCTGAAGAA
* *
18245437 TTTTCAATTTCTACTTTTCAAAAAATCAACTCATATTG-AGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCA-AGAAGTGAGTTGAGCCTCAGGACA
* *
18245501 CGCTGAGGTA
65 CGCTGAAGAA
* *
18245511 TTTTCAACTTCTGCTATTCAA
1 TTTTCAATTTCTGCTTTTCAA
18245532 TTTATGTGTT
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
73 1 0.01
74 83 0.99
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (74 bp):
TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAGGACAC
GCTGAAGAA
Found at i:18247717 original size:16 final size:16
Alignment explanation
Indices: 18247698--18247732 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
18247688 TACTTTTATA
*
18247698 TATATAGTATTATTTT
1 TATATAGTATTATATT
*
18247714 TATATATTATTATATT
1 TATATAGTATTATATT
18247730 TAT
1 TAT
18247733 TATTATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (16 bp):
TATATAGTATTATATT
Found at i:18247724 original size:3 final size:3
Alignment explanation
Indices: 18247705--18247800 Score: 60
Period size: 3 Copynumber: 32.0 Consensus size: 3
18247695 ATATATATAG
*
18247705 TAT TAT TTT TAT ATAT TAT TA- TATT TAT TAT TA- TATT TAT TAT TA-
1 TAT TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT
* * *
18247750 TATT TAT TA- TATT TAT TAT TGT TACT TAT TAT T-T TAT T-T TAA CAT
1 TA-T TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
18247795 TAT TAT
1 TAT TAT
18247801 GTCAAACTTG
Statistics
Matches: 73, Mismatches: 8, Indels: 24
0.70 0.08 0.23
Matches are distributed among these distances:
2 12 0.16
3 47 0.64
4 14 0.19
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:18247734 original size:9 final size:9
Alignment explanation
Indices: 18247708--18247768 Score: 76
Period size: 9 Copynumber: 7.1 Consensus size: 9
18247698 TATATAGTAT
18247708 TATTT-TTA
1 TATTTATTA
18247716 TATATTATTA
1 TAT-TTATTA
18247726 TATTTATTA
1 TATTTATTA
*
18247735 T-TATATT-
1 TATTTATTA
18247742 TA-TTATTA
1 TATTTATTA
18247750 TATTTATTA
1 TATTTATTA
18247759 TATTTATTA
1 TATTTATTA
18247768 T
1 T
18247769 TGTTACTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
7 5 0.11
8 10 0.22
9 25 0.54
10 6 0.13
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TATTTATTA
Found at i:18247735 original size:12 final size:12
Alignment explanation
Indices: 18247718--18247788 Score: 85
Period size: 12 Copynumber: 6.1 Consensus size: 12
18247708 TATTTTTATA
18247718 TATTATTATATT
1 TATTATTATATT
18247730 TATTATTATATT
1 TATTATTATATT
18247742 TATTATTATA--
1 TATTATTATATT
18247752 T-TTATTATATT
1 TATTATTATATT
* *
18247763 TATTATTGTTACT
1 TATTATT-ATATT
*
18247776 TATTATTTTATT
1 TATTATTATATT
18247788 T
1 T
18247789 TAACATTATT
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
9 8 0.15
10 1 0.02
11 1 0.02
12 32 0.62
13 10 0.19
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (12 bp):
TATTATTATATT
Found at i:18247744 original size:21 final size:21
Alignment explanation
Indices: 18247713--18247787 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 21
18247703 AGTATTATTT
18247713 TTATATATTATTATATTTA-TTA
1 TTATAT-TTATTAT-TTTACTTA
* *
18247735 TTATATTTATTATTATATTTA
1 TTATATTTATTATTTTACTTA
18247756 TTATATTTATTATTGTTACTTA
1 TTATATTTATTATT-TTACTTA
18247778 TTAT-TTTATT
1 TTATATTTATT
18247788 TTAACATTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.06
21 30 0.62
22 15 0.31
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (21 bp):
TTATATTTATTATTTTACTTA
Found at i:18272688 original size:27 final size:27
Alignment explanation
Indices: 18272649--18272710 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
18272639 TAGTTGAACT
* *
18272649 ATGGTAAAGTGATAAAGTGTGCCAAAC
1 ATGGCAAAATGATAAAGTGTGCCAAAC
*
18272676 ATGGCAAAATGATAAAGTGTGCCAAAT
1 ATGGCAAAATGATAAAGTGTGCCAAAC
*
18272703 ATGACAAA
1 ATGGCAAA
18272711 GTGAAATGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21
Consensus pattern (27 bp):
ATGGCAAAATGATAAAGTGTGCCAAAC
Found at i:18281615 original size:46 final size:46
Alignment explanation
Indices: 18281562--18281733 Score: 215
Period size: 46 Copynumber: 3.7 Consensus size: 46
18281552 TGGTTGAGCA
*
18281562 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
18281608 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
18281655 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
18281701 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
18281734 GTGGGCGGGT
Statistics
Matches: 107, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:18281718 original size:93 final size:93
Alignment explanation
Indices: 18281559--18281729 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
18281549 GAATGGTTGA
* *
18281559 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
18281624 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
18281652 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
18281717 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
18281730 ACTTGTGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:18296089 original size:53 final size:53
Alignment explanation
Indices: 18295910--18296113 Score: 210
Period size: 53 Copynumber: 3.8 Consensus size: 53
18295900 AGGGTTTAAG
* * * * * * *
18295910 GATACCAAGTAAGACTATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAA
* * * * * *
18295964 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAATTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT-C-ATAAGGCAAA
* * * *
18296019 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
* *
18296072 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
18296114 TAAAAAGGAA
Statistics
Matches: 122, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
53 48 0.39
54 33 0.27
55 41 0.34
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:18302941 original size:53 final size:53
Alignment explanation
Indices: 18302759--18302965 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 53
18302749 ATTAGGGTTT
* * * * *
18302759 AAGGATATCAAGTAAGACCATGCCAAGGCATGG-AATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAA-TGGTAAG-TTCATAAGGC
* * ** * * *
18302813 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAATTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT-C-ATAAGGC
* * * *
18302868 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
18302921 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
18302966 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 27, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
53 48 0.39
54 34 0.28
55 41 0.33
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:18304395 original size:27 final size:27
Alignment explanation
Indices: 18304360--18304425 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
18304350 TAGTTGAATT
*
18304360 ATGGTAAAGTGATAAAGTGTGCCAAAC
1 ATGGAAAAGTGATAAAGTGTGCCAAAC
* *
18304387 ATGGCAAAGTGATAAAGTGTGCCAAAT
1 ATGGAAAAGTGATAAAGTGTGCCAAAC
18304414 ATGGAAAAGTGA
1 ATGGAAAAGTGA
18304426 AATGTGACAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.42, C:0.09, G:0.27, T:0.21
Consensus pattern (27 bp):
ATGGAAAAGTGATAAAGTGTGCCAAAC
Found at i:18307953 original size:20 final size:21
Alignment explanation
Indices: 18307915--18307954 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
18307905 GAAGTACAAA
18307915 TTACAAAGGAACTAAATTAAG
1 TTACAAAGGAACTAAATTAAG
*
18307936 TTACAAATGAAC-AAATTAA
1 TTACAAAGGAACTAAATTAA
18307955 ACAAAATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.25
Consensus pattern (21 bp):
TTACAAAGGAACTAAATTAAG
Found at i:18311473 original size:42 final size:44
Alignment explanation
Indices: 18311414--18311501 Score: 144
Period size: 42 Copynumber: 2.0 Consensus size: 44
18311404 GACCACTTTA
* *
18311414 ACCCAACCACTGATGGTGGGGTTTGGGTCATTATCT-A-CTGTG
1 ACCCAACCACTGATGGTGGGGGTTAGGTCATTATCTAATCTGTG
18311456 ACCCAACCACTGATGGTGGGGGTTAGGTCATTATCTAATCTGTG
1 ACCCAACCACTGATGGTGGGGGTTAGGTCATTATCTAATCTGTG
18311500 AC
1 AC
18311502 TTATCAAAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
42 34 0.81
43 1 0.02
44 7 0.17
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.30
Consensus pattern (44 bp):
ACCCAACCACTGATGGTGGGGGTTAGGTCATTATCTAATCTGTG
Found at i:18314433 original size:14 final size:15
Alignment explanation
Indices: 18314399--18314436 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
18314389 ACTATTTCTA
18314399 GGTTTATGGGTTATG
1 GGTTTATGGGTTATG
18314414 GGTTTA-GGGATTAT-
1 GGTTTATGGG-TTATG
18314428 GGTTTATGG
1 GGTTTATGG
18314437 TTTAAGTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (15 bp):
GGTTTATGGGTTATG
Found at i:18317448 original size:110 final size:110
Alignment explanation
Indices: 18317306--18317526 Score: 442
Period size: 110 Copynumber: 2.0 Consensus size: 110
18317296 TTACATCAAC
18317306 ATCATAATAGTTATTACGCACATTAATGGTGAAAAACAGAAATTATTAATCAAAAAGTTTAATTG
1 ATCATAATAGTTATTACGCACATTAATGGTGAAAAACAGAAATTATTAATCAAAAAGTTTAATTG
18317371 ATGCATTTTGAGCGTCTTAAGATTTAATTGAGTACAACTTTTTCA
66 ATGCATTTTGAGCGTCTTAAGATTTAATTGAGTACAACTTTTTCA
18317416 ATCATAATAGTTATTACGCACATTAATGGTGAAAAACAGAAATTATTAATCAAAAAGTTTAATTG
1 ATCATAATAGTTATTACGCACATTAATGGTGAAAAACAGAAATTATTAATCAAAAAGTTTAATTG
18317481 ATGCATTTTGAGCGTCTTAAGATTTAATTGAGTACAACTTTTTCA
66 ATGCATTTTGAGCGTCTTAAGATTTAATTGAGTACAACTTTTTCA
18317526 A
1 A
18317527 AAAACGACCA
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 111 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (110 bp):
ATCATAATAGTTATTACGCACATTAATGGTGAAAAACAGAAATTATTAATCAAAAAGTTTAATTG
ATGCATTTTGAGCGTCTTAAGATTTAATTGAGTACAACTTTTTCA
Found at i:18320860 original size:42 final size:43
Alignment explanation
Indices: 18320747--18320915 Score: 157
Period size: 42 Copynumber: 4.0 Consensus size: 43
18320737 TTTTAATAGC
* * *
18320747 GGAAAAGCGTCGCTAAAAG-CATGATCTTTAGTGGC--TTTTG
1 GGAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTTTG
* * * *
18320787 CAGGAAAAGTGCTGTTAAAGGTCATGGTCTTTAGCGGCGTTTTTG
1 --GGAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTTTG
* *
18320832 GG-AAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTG
1 GGAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTTTG
* * * * * *
18320874 GGAAAAGTGTCGCTACAGATTATGACCTTTAGCGGCGTTTTT
1 GGAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTTT
18320916 TTCATAAATG
Statistics
Matches: 103, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
42 51 0.50
43 47 0.46
45 5 0.05
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (43 bp):
GGAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTTTG
Found at i:18325501 original size:52 final size:49
Alignment explanation
Indices: 18325416--18325782 Score: 431
Period size: 46 Copynumber: 7.6 Consensus size: 49
18325406 TTTGAGTACT
* ***
18325416 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAACTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
18325462 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
18325514 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
18325560 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
18325606 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
18325658 TCTGATCAAGTGATAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
18325710 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
18325756 TCTGATCAAGTGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
18325783 GCTACACTTA
Statistics
Matches: 288, Mismatches: 19, Indels: 28
0.86 0.06 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 130 0.45
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:18325536 original size:98 final size:97
Alignment explanation
Indices: 18325416--18325782 Score: 492
Period size: 98 Copynumber: 3.7 Consensus size: 97
18325406 TTTGAGTACT
* * *
18325416 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAACTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
18325481 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
18325514 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
18325574 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
18325606 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
*
18325671 TAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * *
18325710 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
18325775 GATAAGTG
65 GA-AAGTG
18325783 GCTACACTTA
Statistics
Matches: 238, Mismatches: 17, Indels: 27
0.84 0.06 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 1 0.00
98 143 0.60
99 10 0.04
101 1 0.00
104 41 0.17
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:18325677 original size:7 final size:7
Alignment explanation
Indices: 18325660--18325693 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
18325650 TACACTTATC
18325660 TGATCAAG
1 TGAT-AAG
18325668 TGATAAG
1 TGATAAG
*
18325675 TGAAAAG
1 TGATAAG
18325682 TGATAAG
1 TGATAAG
18325689 TGATA
1 TGATA
18325694 GCTTCGGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.26
Consensus pattern (7 bp):
TGATAAG
Found at i:18325764 original size:196 final size:196
Alignment explanation
Indices: 18325430--18325782 Score: 598
Period size: 196 Copynumber: 1.8 Consensus size: 196
18325420 ATCAAGTGAT
* * *
18325430 AAAGTGATAAGTGGTAGCTTTAACTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAACTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* * * *
18325495 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
18325560 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
18325625 G
196 G
** * *
18325626 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGATAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAACTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
*
18325691 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
18325756 TCTGATCAAGTGACAAAGTGATAAGTG
131 TCTGATCAAGTGACAAAGTGATAAGTG
18325783 GCTACACTTA
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 145 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAACTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:18325790 original size:37 final size:37
Alignment explanation
Indices: 18325746--18325891 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
18325736 GATAGCTTTA
**
18325746 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
18325783 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
18325820 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
18325857 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
18325892 ATCATACGTA
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 88 0.85
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:18325819 original size:150 final size:150
Alignment explanation
Indices: 18325416--18325771 Score: 478
Period size: 150 Copynumber: 2.4 Consensus size: 150
18325406 TTTGAGTACT
* * * * *
18325416 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAACTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * * *
18325481 GAAAGTGATAAGTAATAGCTTC-G---GCTATACTTATC---TGATCAAGTGATAAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGCAAACTAAACTGATCAAGTGATCAAGTGATAAAGTGATAAG
18325539 TGATAGCTTCGGCTATACTTA
130 TGATAGCTTCGGCTATACTTA
*
18325560 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * * * *
18325625 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAT-AAGTGA-AAAGTGATAA
66 GAAAGTGATAACT-ATAGCTTCAGC-AAACTAAACTGATCAAGTGATCAAGTGATAAAGTGATAA
18325688 GTGATAGCTTCGGCTATACTTA
129 GTGATAGCTTCGGCTATACTTA
*
18325710 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAA
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAA
18325772 AGTGATAAGT
Statistics
Matches: 192, Mismatches: 12, Indels: 10
0.90 0.06 0.05
Matches are distributed among these distances:
144 82 0.43
145 1 0.01
149 7 0.04
150 92 0.48
151 6 0.03
152 4 0.02
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (150 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAACTATAGCTTCAGCAAACTAAACTGATCAAGTGATCAAGTGATAAAGTGATAAGT
GATAGCTTCGGCTATACTTA
Found at i:18327209 original size:49 final size:49
Alignment explanation
Indices: 18327148--18327340 Score: 323
Period size: 49 Copynumber: 3.9 Consensus size: 49
18327138 ATGTGAACAT
18327148 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
18327198 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
18327247 GTGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * * *
18327296 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCG
18327341 AGAAAACGAA
Statistics
Matches: 137, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
49 133 0.97
50 4 0.03
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:18330551 original size:52 final size:49
Alignment explanation
Indices: 18330466--18330832 Score: 449
Period size: 46 Copynumber: 7.6 Consensus size: 49
18330456 TTTGAGTACT
* **
18330466 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
18330512 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
18330564 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
18330610 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
18330656 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
18330708 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
18330760 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
18330806 TCTGATCAAGTGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
18330833 GCTACACTTA
Statistics
Matches: 291, Mismatches: 16, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 133 0.46
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:18330586 original size:98 final size:97
Alignment explanation
Indices: 18330466--18330832 Score: 510
Period size: 98 Copynumber: 3.7 Consensus size: 97
18330456 TTTGAGTACT
* *
18330466 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
18330531 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
18330564 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
18330624 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
18330656 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
18330721 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * *
18330760 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
18330825 GATAAGTG
65 GA-AAGTG
18330833 GCTACACTTA
Statistics
Matches: 241, Mismatches: 14, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 1 0.00
98 146 0.61
99 10 0.04
101 1 0.00
104 41 0.17
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:18330814 original size:196 final size:196
Alignment explanation
Indices: 18330480--18330832 Score: 616
Period size: 196 Copynumber: 1.8 Consensus size: 196
18330470 ATCAAGTGAT
* * *
18330480 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* * * *
18330545 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
18330610 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
18330675 G
196 G
* *
18330676 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
*
18330741 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
18330806 TCTGATCAAGTGACAAAGTGATAAGTG
131 TCTGATCAAGTGACAAAGTGATAAGTG
18330833 GCTACACTTA
Statistics
Matches: 147, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
196 147 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:18330840 original size:37 final size:37
Alignment explanation
Indices: 18330796--18330941 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
18330786 GATAGCTTTA
**
18330796 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
18330833 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
18330870 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
18330907 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
18330942 ATCATACGTA
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 88 0.85
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:18330869 original size:150 final size:149
Alignment explanation
Indices: 18330466--18330821 Score: 485
Period size: 150 Copynumber: 2.4 Consensus size: 149
18330456 TTTGAGTACT
* * * *
18330466 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * * *
18330531 GAAAGTGATAAGTAATAGCTTC-G---GCTATACTTATC---TGATCAAGTGATAAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGCAAACTAAACTGATCAAGTGA-CAAGTGATAAAGTGATAAG
18330589 TGATAGCTTCGGCTATACTTA
129 TGATAGCTTCGGCTATACTTA
*
18330610 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * * * *
18330675 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA-AAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGC-AAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAG
18330739 TGATAGCTTCGGCTATACTTA
129 TGATAGCTTCGGCTATACTTA
*
18330760 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAA
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAA
18330822 AGTGATAAGT
Statistics
Matches: 193, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
144 83 0.43
145 1 0.01
149 7 0.04
150 92 0.48
151 7 0.04
152 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (149 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAACTATAGCTTCAGCAAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAGTG
ATAGCTTCGGCTATACTTA
Found at i:18335049 original size:107 final size:107
Alignment explanation
Indices: 18334863--18335070 Score: 317
Period size: 107 Copynumber: 1.9 Consensus size: 107
18334853 ATGGTGAATT
* * * *
18334863 TTATCTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCGCAAATCCTATACCCCTGAAGTTGTAGT
1 TTATCTCCCTAAAATTGCAGTAGAGCAGATTAAAGCCACAAATCCTATACCCCTAAAATTGTAGT
* *
18334928 GGGACGGATTGAAGTTATCATGACAAATCTTATCTCTCAATC
66 GGGACAGATTGAAGTCATCATGACAAATCTTATCTCTCAATC
* *
18334970 TTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAATCTTATACCCCTAAAATTGTAGT
1 TTATCTCCCTAAAATTGCAGTAGAGCAGATTAAAGCCACAAATCCTATACCCCTAAAATTGTAGT
* * *
18335035 GGGATAGATTGAAGTCATCATGGCGAATCTTATCTC
66 GGGACAGATTGAAGTCATCATGACAAATCTTATCTC
18335071 CCTAAAGTTG
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
107 90 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (107 bp):
TTATCTCCCTAAAATTGCAGTAGAGCAGATTAAAGCCACAAATCCTATACCCCTAAAATTGTAGT
GGGACAGATTGAAGTCATCATGACAAATCTTATCTCTCAATC
Found at i:18335388 original size:21 final size:21
Alignment explanation
Indices: 18335339--18335384 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
18335329 TAGAATTAGA
18335339 ATATTATTTTATTTATTTATC
1 ATATTATTTTATTTATTTATC
18335360 ATATTATTTTATTTATTTATC
1 ATATTATTTTATTTATTTATC
18335381 -TATT
1 ATATT
18335385 TATTATCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.16
21 21 0.84
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.67
Consensus pattern (21 bp):
ATATTATTTTATTTATTTATC
Found at i:18335634 original size:23 final size:25
Alignment explanation
Indices: 18335601--18335652 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
18335591 ATCATCATCG
18335601 TTTATTAGTATGAT-A-T-TTTTATT
1 TTTATTAGTAT-ATCATTGTTTTATT
*
18335624 TTTATTTGTATATCATTGTTTTATT
1 TTTATTAGTATATCATTGTTTTATT
18335649 TTTA
1 TTTA
18335653 CACACTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 2 0.08
23 11 0.44
24 1 0.04
25 11 0.44
ACGTcount: A:0.23, C:0.02, G:0.08, T:0.67
Consensus pattern (25 bp):
TTTATTAGTATATCATTGTTTTATT
Found at i:18337328 original size:63 final size:63
Alignment explanation
Indices: 18337213--18337395 Score: 276
Period size: 63 Copynumber: 2.9 Consensus size: 63
18337203 AAGGTGTTGT
* * * * *
18337213 ATTTATATGAATAGGAAATTAGTCCTAAACCTGTTAGAGGTCTATTCGCTGCAAGCATGCTGC
1 ATTTATATTAGTAGGAAATTAATCCTAATCCTGTTAGAGGTCTATTCCCTGCAAGCATGCTGC
* * *
18337276 ATTTTTATTAGTAGGAAATTAATCCCAATCCTGTTAGAGGTCTATTCCCTGCAAGCATGTTGC
1 ATTTATATTAGTAGGAAATTAATCCTAATCCTGTTAGAGGTCTATTCCCTGCAAGCATGCTGC
* *
18337339 ATTTATATTAGTAGGAAATTAATCCTAATCCTTTTAGAGGTCTATTTCCTGCAAGCA
1 ATTTATATTAGTAGGAAATTAATCCTAATCCTGTTAGAGGTCTATTCCCTGCAAGCA
18337396 AAATCTACAG
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 108 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (63 bp):
ATTTATATTAGTAGGAAATTAATCCTAATCCTGTTAGAGGTCTATTCCCTGCAAGCATGCTGC
Found at i:18341539 original size:20 final size:22
Alignment explanation
Indices: 18341511--18341556 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
18341501 ATATTTGGTA
*
18341511 ATAATAATA-ATA-ATATGCAC
1 ATAAAAATACATATATATGCAC
*
18341531 ATAAAAATACATATATATGCAT
1 ATAAAAATACATATATATGCAC
18341553 ATAA
1 ATAA
18341557 TAAAAGTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 3 0.14
22 11 0.50
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (22 bp):
ATAAAAATACATATATATGCAC
Found at i:18341671 original size:18 final size:18
Alignment explanation
Indices: 18341648--18341683 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
18341638 ACAATAATAT
18341648 AAAATA-ATGATATGTACA
1 AAAATATAT-ATATGTACA
18341666 AAAATATATATATGTACA
1 AAAATATATATATGTACA
18341684 TAATATAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.31
Consensus pattern (18 bp):
AAAATATATATATGTACA
Found at i:18342487 original size:15 final size:15
Alignment explanation
Indices: 18342467--18342516 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 15
18342457 GAACGTTCCT
18342467 TTTTTTTGTTGAAAA
1 TTTTTTTGTTGAAAA
* *
18342482 TTTTTTT-TTGGAAT
1 TTTTTTTGTTGAAAA
* *
18342496 TTTTTTTGCT-AGAA
1 TTTTTTTGTTGAAAA
18342510 TTTTTTT
1 TTTTTTT
18342517 TGCTCTTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
14 20 0.71
15 8 0.29
ACGTcount: A:0.18, C:0.02, G:0.12, T:0.68
Consensus pattern (15 bp):
TTTTTTTGTTGAAAA
Found at i:18342501 original size:14 final size:15
Alignment explanation
Indices: 18342466--18342518 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
18342456 TGAACGTTCC
*
18342466 TTTTTTTTGTTGAAA
1 TTTTTTTTGTTGGAA
*
18342481 ATTTTTTT-TTGGAA
1 TTTTTTTTGTTGGAA
* *
18342495 TTTTTTTTGCTAGAA
1 TTTTTTTTGTTGGAA
18342510 TTTTTTTTG
1 TTTTTTTTG
18342519 CTCTTTTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 12 0.38
15 20 0.62
ACGTcount: A:0.17, C:0.02, G:0.13, T:0.68
Consensus pattern (15 bp):
TTTTTTTTGTTGGAA
Found at i:18342780 original size:29 final size:28
Alignment explanation
Indices: 18342734--18342832 Score: 74
Period size: 29 Copynumber: 3.4 Consensus size: 28
18342724 TTCTGGGGCT
*
18342734 AAATGTAATTTTTAGAAAATTTAGGGTTA
1 AAATGTAA-TTTAAGAAAATTTAGGGTTA
* *
18342763 AAATGTAATTTAAGGAAAGTTAGGGGTCT-
1 AAATGTAATTTAAGAAAATTTA-GGGT-TA
* * * *
18342792 AAGTGAAATTTAAAGAAAGTTTAAGGGTCA
1 AAATGTAATTT-AAGAAAATTT-AGGGTTA
*
18342822 AAATGCAATTT
1 AAATGTAATTT
18342833 TTTTATTAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
28 11 0.20
29 21 0.39
30 21 0.39
31 1 0.02
ACGTcount: A:0.42, C:0.03, G:0.21, T:0.33
Consensus pattern (28 bp):
AAATGTAATTTAAGAAAATTTAGGGTTA
Found at i:18342832 original size:30 final size:30
Alignment explanation
Indices: 18342747--18342832 Score: 86
Period size: 29 Copynumber: 2.9 Consensus size: 30
18342737 TGTAATTTTT
* * *
18342747 AGAAAATTT-AGGGTTAAAATGTAATTTAA
1 AGAAAGTTTAAGGGTCAAAATGAAATTTAA
* * * *
18342776 GGAAAG-TTAGGGGTCTAAGTGAAATTTAA
1 AGAAAGTTTAAGGGTCAAAATGAAATTTAA
*
18342805 AGAAAGTTTAAGGGTCAAAATGCAATTT
1 AGAAAGTTTAAGGGTCAAAATGAAATTT
18342833 TTTTATTAAT
Statistics
Matches: 43, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
28 2 0.05
29 24 0.56
30 17 0.40
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.30
Consensus pattern (30 bp):
AGAAAGTTTAAGGGTCAAAATGAAATTTAA
Found at i:18343314 original size:13 final size:13
Alignment explanation
Indices: 18343296--18343331 Score: 63
Period size: 14 Copynumber: 2.7 Consensus size: 13
18343286 ATGAGTTGAT
18343296 TTTTGAAAACAGA
1 TTTTGAAAACAGA
18343309 TTTTGAAAAACAGA
1 TTTTG-AAAACAGA
18343323 TTTTGAAAA
1 TTTTGAAAA
18343332 TATCTCGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (13 bp):
TTTTGAAAACAGA
Found at i:18343319 original size:88 final size:88
Alignment explanation
Indices: 18343226--18343387 Score: 236
Period size: 88 Copynumber: 1.8 Consensus size: 88
18343216 GAATTTAAAA
* *
18343226 AAAAACAGAAATTGAAAATAGCTC-AGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATAGCTCGA-CACGTGACCCAAGGCTCAACTCACATCTCGCAATATGA
18343290 GTTGATTTTTGAAAACAGATTTTG
65 GTTGATTTTTGAAAACAGATTTTG
** * * * *
18343314 AAAAACAGATTTTGAAAATATCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGAAATTGAAAATAGCTCGACACGTGACCCAAGGCTCAACTCACATCTCGCAATATGAG
18343379 TTGATTTTT
66 TTGATTTTT
18343388 TTGAAAAATA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
88 64 0.98
89 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATAGCTCGACACGTGACCCAAGGCTCAACTCACATCTCGCAATATGAG
TTGATTTTTGAAAACAGATTTTG
Found at i:18343515 original size:244 final size:241
Alignment explanation
Indices: 18343186--18343721 Score: 653
Period size: 244 Copynumber: 2.2 Consensus size: 241
18343176 AGAAATTAAA
* * **** *
18343186 AAGCTCAACTCACCTCTTGCAATATGAGTTGAATTTAAAAAAAAACAGAAATTGAAAATAGCTCA
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
* * * **
18343251 GCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAGATTTTG
66 GCACGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGAAAGACAGAAATTG
** * * * **
18343314 AAAAACAGATTTTGAAAATATCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAG
131 AAAAACAGAAATTGAAAATACCTCGACATGTAACCCAAGGCTCAACTCACATCTCGCAATACGAG
* * * *
18343379 TTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTG
196 TTGATTTTTTTG-AAAACAGAAATTG--AAAATACCTCAGCGTGT--CCTG
18343430 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
* * **
18343495 GCGCGTAAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTCGATTTTTTTTTGAAAGGTAGAAA
66 GCACGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGA---TTTTTTGAAAGACAGAAA
* * * * * *
18343560 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTAACCTAAGGCTCAACTCGCCTCTCGCAATAC
128 TTGAAAAACAGAAATTGAAAATACCTCGACATGTAACCCAAGGCTCAACTCACATCTCGCAATAC
* *
18343625 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
193 GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTG
*
18343674 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACA
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACA
18343722 TACCTCAGCA
Statistics
Matches: 250, Mismatches: 36, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
244 131 0.52
245 15 0.06
246 15 0.06
248 19 0.08
249 70 0.28
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (241 bp):
AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
GCACGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGAAAGACAGAAATTG
AAAAACAGAAATTGAAAATACCTCGACATGTAACCCAAGGCTCAACTCACATCTCGCAATACGAG
TTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTG
Found at i:18343519 original size:77 final size:78
Alignment explanation
Indices: 18343351--18343566 Score: 256
Period size: 79 Copynumber: 2.7 Consensus size: 78
18343341 ATGTGACCCG
* * * *
18343351 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTG--AAAATACCT
* * * * *
18343416 CAGTGTGTGATCTGA
64 CAGCGCGTAAGCTCA
* *
18343431 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATACCTCA
18343495 GCGCGTAAGC-CA
66 GCGCGTAAGCTCA
* * *
18343507 AGGCTCAACTCACCTCTTGCAATATGAGTCGATTTTTTTTTGAAAGGTAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGATAGAAATTGAAAA
18343567 ACGGAAATTG
Statistics
Matches: 118, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
76 2 0.02
77 44 0.37
79 71 0.60
80 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATACCTCA
GCGCGTAAGCTCA
Found at i:18343634 original size:93 final size:93
Alignment explanation
Indices: 18343467--18343638 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
18343457 GTTGATTTTT
* * * *
18343467 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTAAGCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTAAGCCAAGGCTCAACTCACCTCTCGCAATAC
18343532 GAGTCGATTTTTTTTTGAAAGGTAGAAA
66 GAGTCGATTTTTTTTTGAAAGGTAGAAA
* * * *
18343560 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTAA-CCTAAGGCTCAACTCGCCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTAAGCC-AAGGCTCAACTCACCTCTCGCAATA
*
18343624 CGAGTTGATTTTTTT
65 CGAGTCGATTTTTTT
18343639 GACAACAGAA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (93 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTAAGCCAAGGCTCAACTCACCTCTCGCAATAC
GAGTCGATTTTTTTTTGAAAGGTAGAAA
Found at i:18343763 original size:65 final size:65
Alignment explanation
Indices: 18343657--18343778 Score: 199
Period size: 65 Copynumber: 1.9 Consensus size: 65
18343647 AAATTGAAAT
*
18343657 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACA
1 TACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACA
* ** *
18343722 TACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTTTT
1 TACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
18343779 TTTGAAAAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 52 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (65 bp):
TACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACA
Found at i:18343896 original size:72 final size:72
Alignment explanation
Indices: 18343722--18344003 Score: 395
Period size: 72 Copynumber: 3.8 Consensus size: 72
18343712 TTGAAAGACA
* * *
18343722 TACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTTTTTTTGAAAA
1 TACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA------ATTTTGAAAA
* *
18343787 ATAGAAATTAAAAA
60 A-AGAAATTGAAAT
*
18343801 TACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAA-AA
1 TACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-AAGAA
18343865 ATTGAAAT
65 ATTGAAAT
* * *
18343873 TACCTCAACGTGTATTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAAATAAA
1 TACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAAAGAAA
18343938 TTGAAAT
66 TTGAAAT
*
18343945 TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA
1 TACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA
18344004 CGAAAGTAAC
Statistics
Matches: 193, Mismatches: 8, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
71 2 0.01
72 132 0.68
73 10 0.05
74 1 0.01
79 48 0.25
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (72 bp):
TACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAAAGAAA
TTGAAAT
Found at i:18343999 original size:144 final size:142
Alignment explanation
Indices: 18343600--18344004 Score: 460
Period size: 144 Copynumber: 2.8 Consensus size: 142
18343590 GTGTAACCTA
*** * * *
18343600 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTGAAAAAAGAAATTGAAATTACCTCAG
* ** ***** *
18343665 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTT---TTTTGAAAGACATACC
65 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAAGAAATACC
* *
18343726 TCAGCATGTCTTG
130 TCAACATGTATTG
* * *
18343739 AGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTTTTTTTGAAAAATAGAAATTAAAAATAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA-----TTTTTTGAAAAA-AGAAATTGAAATTAC
*
18343804 CTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTG
60 CTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAA--G
*
18343869 AAATTACCTCAACGTGTATTG
123 AAA-TACCTCAACATGTATTG
* * *
18343890 AGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAAAATAAATTGAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAAAAGAAATTGAAATTACCTCAGC
18343954 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAC
66 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAC
18344005 GAAAGTAACA
Statistics
Matches: 225, Mismatches: 29, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
139 27 0.12
143 11 0.05
144 121 0.54
145 15 0.07
148 3 0.01
150 3 0.01
151 45 0.20
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.34
Consensus pattern (142 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAAAAGAAATTGAAATTACCTCAGC
GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAAGAAATACCT
CAACATGTATTG
Found at i:18355931 original size:22 final size:20
Alignment explanation
Indices: 18355896--18355936 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
18355886 ATTTGGTAAT
18355896 AATAATAATATGCACATAAA
1 AATAATAATATGCACATAAA
*
18355916 AATACATATATATGCATATAA
1 AATA-ATA-ATATGCACATAA
18355937 TAAAAGTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 3 0.17
22 11 0.61
ACGTcount: A:0.56, C:0.10, G:0.05, T:0.29
Consensus pattern (20 bp):
AATAATAATATGCACATAAA
Found at i:18356050 original size:18 final size:20
Alignment explanation
Indices: 18356027--18356064 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
18356017 ACAATAATAT
18356027 AAAATA-AT-GATATGTACA
1 AAAATATATAGATATGTACA
*
18356045 AAAATATATATATATGTACA
1 AAAATATATAGATATGTACA
18356065 TAATATAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 9 0.53
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.32
Consensus pattern (20 bp):
AAAATATATAGATATGTACA
Found at i:18357147 original size:29 final size:31
Alignment explanation
Indices: 18357115--18357186 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 31
18357105 TTCTGAGGCT
*
18357115 AAATGAAATTTTTA-GAAAATTTA-GGGTTA
1 AAATGAAATTTTTAGGAAAATTTAGGGGTCA
* *
18357144 AAATGAAA-TTTAAGGAAAGTTTAGGGGTCA
1 AAATGAAATTTTTAGGAAAATTTAGGGGTCA
*
18357174 AAATGCAATTTTT
1 AAATGAAATTTTT
18357187 TTATTAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 4 0.11
29 16 0.46
30 12 0.34
31 3 0.09
ACGTcount: A:0.43, C:0.03, G:0.19, T:0.35
Consensus pattern (31 bp):
AAATGAAATTTTTAGGAAAATTTAGGGGTCA
Found at i:18361987 original size:24 final size:24
Alignment explanation
Indices: 18361931--18362005 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
18361921 CATACTATTC
18361931 ATATA-TT-TTTATGTTATTTCAT
1 ATATATTTCTTTATGTTATTTCAT
* * **
18361953 ACATATATCTTTATGTTATTTGTT
1 ATATATTTCTTTATGTTATTTCAT
**
18361977 ATATATTTCTTT-TACTATTTCAT
1 ATATATTTCTTTATGTTATTTCAT
*
18362000 GTATAT
1 ATATAT
18362006 GTTTTTTAAA
Statistics
Matches: 40, Mismatches: 11, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
22 4 0.10
23 13 0.32
24 23 0.57
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.60
Consensus pattern (24 bp):
ATATATTTCTTTATGTTATTTCAT
Found at i:18362198 original size:16 final size:16
Alignment explanation
Indices: 18362159--18362233 Score: 62
Period size: 16 Copynumber: 4.4 Consensus size: 16
18362149 TGTTTTCAAC
**
18362159 ATTATTATTATGTATGT
1 ATTA-TATTATGTAAAT
18362176 A-TATATTATGTAAAT
1 ATTATATTATGTAAAT
*
18362191 ATTATATTATGTAAGT
1 ATTATATTATGTAAAT
*
18362207 ATGTATATATATTTATATAT
1 AT-TATAT-TATGTA-A-AT
18362227 ATTATAT
1 ATTATAT
18362234 ACATTTTTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
15 11 0.23
16 17 0.35
17 6 0.12
18 5 0.10
19 6 0.12
20 3 0.06
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (16 bp):
ATTATATTATGTAAAT
Found at i:18362228 original size:31 final size:34
Alignment explanation
Indices: 18362161--18362233 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 34
18362151 TTTTCAACAT
*
18362161 TATTATTATGTATGTATATATTATGTAAATATTA
1 TATTATTAAGTATGTATATATTATGTAAATATTA
*
18362195 TATTATGTAAGTATGTATATA-TATTTATATATATTA
1 TATTAT-TAAGTATGTATATATTATGTA-A-ATATTA
18362231 TAT
1 TAT
18362234 ACATTTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 11 0.32
35 14 0.41
36 9 0.26
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.53
Consensus pattern (34 bp):
TATTATTAAGTATGTATATATTATGTAAATATTA
Found at i:18363603 original size:467 final size:467
Alignment explanation
Indices: 18362726--18363667 Score: 1708
Period size: 467 Copynumber: 2.0 Consensus size: 467
18362716 ATTATTTAGG
*
18362726 AAAA-TTTATTCCTTTTTCAATAAGTAAGGCAACGTATCGGTTTAATACTAAGTCACCGATTTCA
1 AAAATTTTATTCATTTTTCAATAAGTAAGGCAACGTATCGGTTTAATACTAAGTCACCGATTTCA
18362790 TCGCTATGTTGGGTGAACATCAATCGACTCGTGTTAAAACGGTATGCCCTTCTAAAAAACCGAAA
66 TCGCTATGTTGGGTGAACATCAATCGACTCGTGTTAAAACGGTATGCCCTTCTAAAAAACCGAAA
18362855 GACTAAAATTTCTCGTGTTTCAATTGTATTACGACTAAATGTTACATTGAACTCGTATTTTTTGA
131 GACTAAAATTTCTCGTGTTTCAATTGTATTACGACTAAATGTTACATTGAACTCGTATTTTTTGA
* *
18362920 AAATCAAGACCATATGTATTCTACAAGATACCAATTTTGGGCGTCGCGAGGGTGCTACTACCTTC
196 AAATCAAGACCATACGTATTCTACAAGATACCAATTTTGGGCGTCGCGAGGGTGCTAATACCTTC
* * *
18362985 CTCGCGCATAACTGACTCCGGAACCCTAATTTTTTTTCTCTGGATTTTTACGTAGACCTAAACTC
261 CTCGCGCATAACTGACTCCCGAACCCTAATTTTTTTTCTCTAGATTTTTACGTAGACATAAACTC
18363050 AGCCTTCTTTTTGTTAAAAATAAACTTATTAGGTGTCCGATCACACCTACAAAAAGGATCGGTGG
326 AGCCTTCTTTTTGTTAAAAATAAACTTATTAGGTGTCCGATCACACCTACAAAAAGGATCGGTGG
*
18363115 CGACTGCCTTTTATTTCCAAAAATCAAACTTCAGTTTTCAAGTTTTCACTAAATCGCCACAATTA
391 CGACTCCCTTTTATTTCCAAAAATCAAACTTCAGTTTTCAAGTTTTCACTAAATCGCCACAATTA
18363180 GCGACCGAAAGC
456 GCGACCGAAAGC
* *
18363192 AAAATTTTATTCATTTTTTAATAAGTAAGGCAACGTATCGGTTTAATACTAAGTCGCCGATTTCA
1 AAAATTTTATTCATTTTTCAATAAGTAAGGCAACGTATCGGTTTAATACTAAGTCACCGATTTCA
*
18363257 TCGCTATGTTGGGTGAACATCAATCGACTCGTGTTAAAACGGTATGCCCTTCTAAAAAACTGATA
66 TCGCTATGTTGGGTGAACATCAATCGACTCGTGTTAAAACGGTATGCCCTTCTAAAAAACCGA-A
*
18363322 A-ACTAAAATTTCTCGTGTTTCAATTGTATTACGATTAAATGTTACATTGAACTCGTATTTTTTG
130 AGACTAAAATTTCTCGTGTTTCAATTGTATTACGACTAAATGTTACATTGAACTCGTATTTTTTG
18363386 AAAATCAAGACCATACGTATTCTACAAGATACCAATTTTGGGCGTCGCGAGGGTGCTAATACCTT
195 AAAATCAAGACCATACGTATTCTACAAGATACCAATTTTGGGCGTCGCGAGGGTGCTAATACCTT
*
18363451 CCTCGCGCGTAACTGACTCCCGAACCCTAATTTTTTTTCTCTAGATTTTTACGTAGACATAAACT
260 CCTCGCGCATAACTGACTCCCGAACCCTAATTTTTTTTCTCTAGATTTTTACGTAGACATAAACT
* *
18363516 CAGCCTTCTTTTTGTTAAAAATAAATTTATTAGGTGTCCGATCACACCTACAAAAAGGGTCGGTG
325 CAGCCTTCTTTTTGTTAAAAATAAACTTATTAGGTGTCCGATCACACCTACAAAAAGGATCGGTG
*
18363581 GCGACTCCCTTTTATTTCCAAAAATCAAACTTCAGTTTTCAAGTTTTCACTAAGTCGCCACAATT
390 GCGACTCCCTTTTATTTCCAAAAATCAAACTTCAGTTTTCAAGTTTTCACTAAATCGCCACAATT
*
18363646 AGCGACCGAAAGT
455 AGCGACCGAAAGC
*
18363659 AAATTTTTA
1 AAAATTTTA
18363668 CGTCGCTACA
Statistics
Matches: 457, Mismatches: 17, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
466 4 0.01
467 451 0.99
468 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33
Consensus pattern (467 bp):
AAAATTTTATTCATTTTTCAATAAGTAAGGCAACGTATCGGTTTAATACTAAGTCACCGATTTCA
TCGCTATGTTGGGTGAACATCAATCGACTCGTGTTAAAACGGTATGCCCTTCTAAAAAACCGAAA
GACTAAAATTTCTCGTGTTTCAATTGTATTACGACTAAATGTTACATTGAACTCGTATTTTTTGA
AAATCAAGACCATACGTATTCTACAAGATACCAATTTTGGGCGTCGCGAGGGTGCTAATACCTTC
CTCGCGCATAACTGACTCCCGAACCCTAATTTTTTTTCTCTAGATTTTTACGTAGACATAAACTC
AGCCTTCTTTTTGTTAAAAATAAACTTATTAGGTGTCCGATCACACCTACAAAAAGGATCGGTGG
CGACTCCCTTTTATTTCCAAAAATCAAACTTCAGTTTTCAAGTTTTCACTAAATCGCCACAATTA
GCGACCGAAAGC
Found at i:18363976 original size:26 final size:26
Alignment explanation
Indices: 18363942--18364005 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
18363932 AAAAATACAT
18363942 AAAAATAAATACCGAAATGGATTTAC
1 AAAAATAAATACCGAAATGGATTTAC
*
18363968 AAAAATAAATACCGAAATGGGTTTAC
1 AAAAATAAATACCGAAATGGATTTAC
18363994 AAAAATAAATAC
1 AAAAATAAATAC
18364006 ACATATTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22
Consensus pattern (26 bp):
AAAAATAAATACCGAAATGGATTTAC
Found at i:18375612 original size:28 final size:29
Alignment explanation
Indices: 18375581--18375643 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
18375571 GATTTTGTCC
18375581 TTTTTACTTTTAT-TTTTATT-TTTTTAAG
1 TTTTTACTTTT-TCTTTTATTCTTTTTAAG
* *
18375609 TTTTGT-CTTTTTCTTTTATTCTTTTTCAT
1 TTTT-TACTTTTTCTTTTATTCTTTTTAAG
18375638 TTTTTA
1 TTTTTA
18375644 AGTTTTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
27 1 0.03
28 17 0.59
29 11 0.38
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.76
Consensus pattern (29 bp):
TTTTTACTTTTTCTTTTATTCTTTTTAAG
Found at i:18375643 original size:37 final size:36
Alignment explanation
Indices: 18375573--18375649 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 36
18375563 CTTCTGTTGA
18375573 TTTTGTCCTTTTTACTTTTATTTTTATTTTTTTAAG
1 TTTTGTCCTTTTTACTTTTATTTTTATTTTTTTAAG
*
18375609 TTTTGT-CTTTTT-CTTTTATTCTTTTTCATTTTTTAAG
1 TTTTGTCCTTTTTACTTTTATT-TTTAT--TTTTTTAAG
18375646 TTTT
1 TTTT
18375650 CATTTTTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
34 8 0.22
35 10 0.27
36 6 0.16
37 13 0.35
ACGTcount: A:0.12, C:0.09, G:0.05, T:0.74
Consensus pattern (36 bp):
TTTTGTCCTTTTTACTTTTATTTTTATTTTTTTAAG
Found at i:18375673 original size:18 final size:16
Alignment explanation
Indices: 18375637--18375685 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
18375627 TTCTTTTTCA
*
18375637 TTTTTTAAGTTTTCATT
1 TTTTTTAA-TTTTAATT
18375654 TTTTTTAACTTTTAACTT
1 TTTTTTAA-TTTTAA-TT
*
18375672 TTTCTTAATTTTAA
1 TTTTTTAATTTTAA
18375686 AAAAAACTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 19 0.68
18 9 0.32
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.67
Consensus pattern (16 bp):
TTTTTTAATTTTAATT
Found at i:18376034 original size:20 final size:20
Alignment explanation
Indices: 18376006--18376064 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
18375996 TTAATAATAA
*
18376006 TAAATAAATATATTT-AATATT
1 TAAA-AAATAAATTTAAAT-TT
18376027 TAAAAAATAAATTTTAAATTT
1 TAAAAAATAAA-TTTAAATTT
* *
18376048 TAAAATATACATTTAAA
1 TAAAAAATAAATTTAAA
18376065 ATATTATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
20 12 0.36
21 18 0.55
22 3 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAAAAATAAATTTAAATTT
Found at i:18376042 original size:21 final size:21
Alignment explanation
Indices: 18376018--18376075 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
18376008 AATAAATATA
18376018 TTTAATATTTAAAAAATAAAT
1 TTTAATATTTAAAAAATAAAT
* *
18376039 TTTAA-ATTTTAAAATATACAT
1 TTTAATA-TTTAAAAAATAAAT
*
18376060 TTAAAATATTATAAAA
1 TT-TAATATT-TAAAA
18376076 CTAATAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
20 1 0.03
21 19 0.63
22 4 0.13
23 6 0.20
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TTTAATATTTAAAAAATAAAT
Found at i:18376152 original size:21 final size:21
Alignment explanation
Indices: 18376013--18376184 Score: 71
Period size: 20 Copynumber: 8.4 Consensus size: 21
18376003 TAATAAATAA
18376013 ATATATTTAATATTTAAAAA-
1 ATATATTTAATATTTAAAAAT
* *
18376033 ATAAATTTTAA-ATTTTAAAAT
1 ATATA-TTTAATATTTAAAAAT
* *
18376054 ATACATTTAAAATATTATAAAACT
1 ATATATTT--AATATT-TAAAAAT
* * * **
18376078 A-ATA-ATAA-CTTGAAAGGT
1 ATATATTTAATATTTAAAAAT
*
18376096 CATATCTTTAAATATTT--AAAT
1 -ATATATTT-AATATTTAAAAAT
* *
18376117 AT-TTTTTATTA-TTAAAAAT
1 ATATATTTAATATTTAAAAAT
18376136 ATATATTTAATATTTAATAAAT
1 ATATATTTAATATTTAA-AAAT
*
18376158 A-ATATTTAA-ACTTTAAAAAA
1 ATATATTTAATA-TTTAAAAAT
18376178 ATA-ATTT
1 ATATATTT
18376185 CAAAATATAT
Statistics
Matches: 112, Mismatches: 22, Indels: 36
0.66 0.13 0.21
Matches are distributed among these distances:
17 2 0.02
18 7 0.06
19 13 0.12
20 37 0.33
21 30 0.27
22 10 0.09
23 7 0.06
24 6 0.05
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (21 bp):
ATATATTTAATATTTAAAAAT
Found at i:18376179 original size:22 final size:21
Alignment explanation
Indices: 18376130--18376182 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
18376120 TTTTATTATT
18376130 AAAAATATATATTTAATATTTA
1 AAAAATA-ATATTTAATATTTA
*
18376152 ATAAATAATATTTAA-ACTTTAA
1 AAAAATAATATTTAATA-TTT-A
18376174 AAAAATAAT
1 AAAAATAAT
18376183 TTCAAAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 1 0.04
21 11 0.41
22 15 0.56
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAATAATATTTAATATTTA
Found at i:18376259 original size:58 final size:57
Alignment explanation
Indices: 18376185--18376343 Score: 218
Period size: 57 Copynumber: 2.8 Consensus size: 57
18376175 AAAATAATTT
* *
18376185 CAAAATATAT-ATTTAAAA-TTAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGA
1 CAAAATATATAATTTAAAATTTAA-AATTAATAATAAAT-AAATAAATAAGGATAAAGA
* *
18376242 CAACATTTA-AATTTTAAAATTTAAAATTAATAATAAATAAATAAAATAAGGATAAAGA
1 CAAAATATATAA-TTTAAAATTTAAAATTAATAATAAATAAAT-AAATAAGGATAAAGA
18376300 CAAAATATATAA-TTAAAATTTAAAATTAATAATAAATAAATAAA
1 CAAAATATATAATTTAAAATTTAAAATTAATAATAAATAAATAAA
18376344 CAAATTTAAA
Statistics
Matches: 91, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
56 3 0.03
57 41 0.45
58 41 0.45
59 6 0.07
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (57 bp):
CAAAATATATAATTTAAAATTTAAAATTAATAATAAATAAATAAATAAGGATAAAGA
Found at i:18376278 original size:269 final size:268
Alignment explanation
Indices: 18375792--18376284 Score: 589
Period size: 269 Copynumber: 1.8 Consensus size: 268
18375782 TTATTTATTA
* * *
18375792 TAAAATATTATAAAATTAATAATAAATTTGAAAGGTCATATCTTTAAATATTTAAATGTCTTATA
1 TAAAATATTATAAAACTAATAATAAACTTGAAAGGTCATATCTTTAAATATTTAAATATCTTATA
* **
18375857 TTATTAAAAATTATATTTAACATTTAAAAATAATATTTTAAATTTTAAATTTTTTAAAAATATAT
66 TTATTAAAAATTATATTTAACATTTAAAAATAATATTTTAAATTTAAAATAATTTAAAAATATAT
* * * * * *
18375922 ATCTAAAACTTCAAAAAAAGGATTAAAAAATATATTATACAATATTTCAAATACACATTTCTAGT
131 ATCTAAAACTTCAAAAAAAGAAATAAAAAATATATAATACAAGA-TTCAAAGACACATTTCTAGA
*
18375987 TTTTTAAAATTAATAATAATAAATAAATATATTTAATATTTAAAAAATAAATTTTAAATTTTAAA
195 ATTTTAAAATTAATAATAATAAATAAATATATTTAATATTTAAAAAATAAATTTTAAATTTTAAA
18376052 ATATACATT
260 ATATACATT
* *
18376061 TAAAATATTATAAAACTAATAAT-AACTTGAAAGGTCATATCTTTAAATATTTAAATATTTTTTA
1 TAAAATATTATAAAACTAATAATAAACTTGAAAGGTCATATCTTTAAATATTTAAATATCTTATA
* *
18376125 TTATTAAAAATATATATTTAATATTTAATAAATAATA-TTTAAACTTTAAAAAAATAATTTCAAA
66 TTATTAAAAAT-TATATTTAACATTTAA-AAATAATATTTTAAA-TTT---AAAATAATTTAAAA
* *
18376189 ATATATATTTAAAA-TT-AAGAATAAA-AAATAAATAAA-ATA-AATA-AGGA-T-AAAGACAAC
125 ATATATATCTAAAACTTCAA-AA-AAAGAAATAAA-AAATATATAATACAAGATTCAAAGAC-AC
18376246 A-TT-TA-AATTTTAAAATTTAAAATTAATAATAAATAAATA
186 ATTTCTAGAATTTTAAAA-TT--AA-TAATAATAAATAAATA
18376285 AAATAAGGAT
Statistics
Matches: 191, Mismatches: 19, Indels: 28
0.80 0.08 0.12
Matches are distributed among these distances:
265 8 0.04
266 4 0.02
267 7 0.04
268 54 0.28
269 59 0.31
270 13 0.07
271 5 0.03
272 12 0.06
273 29 0.15
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.40
Consensus pattern (268 bp):
TAAAATATTATAAAACTAATAATAAACTTGAAAGGTCATATCTTTAAATATTTAAATATCTTATA
TTATTAAAAATTATATTTAACATTTAAAAATAATATTTTAAATTTAAAATAATTTAAAAATATAT
ATCTAAAACTTCAAAAAAAGAAATAAAAAATATATAATACAAGATTCAAAGACACATTTCTAGAA
TTTTAAAATTAATAATAATAAATAAATATATTTAATATTTAAAAAATAAATTTTAAATTTTAAAA
TATACATT
Found at i:18376322 original size:57 final size:57
Alignment explanation
Indices: 18376185--18376343 Score: 216
Period size: 58 Copynumber: 2.8 Consensus size: 57
18376175 AAAATAATTT
* * *
18376185 CAAAATATATATTTAAAA-TTAAGAATAAAAAATAAATAAA-ATAAATAAGGATAAAGA
1 CAAAATATATAATTAAAATTTAA-AATTAATAATAAATAAATA-AAATAAGGATAAAGA
* *
18376242 CAACATTTA-AATTTTAAAATTTAAAATTAATAATAAATAAATAAAATAAGGATAAAGA
1 CAAAATATATAA--TTAAAATTTAAAATTAATAATAAATAAATAAAATAAGGATAAAGA
18376300 CAAAATATATAATTAAAATTTAAAATTAATAATAAATAAATAAA
1 CAAAATATATAATTAAAATTTAAAATTAATAATAAATAAATAAA
18376344 CAAATTTAAA
Statistics
Matches: 90, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
56 1 0.01
57 39 0.43
58 43 0.48
59 7 0.08
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (57 bp):
CAAAATATATAATTAAAATTTAAAATTAATAATAAATAAATAAAATAAGGATAAAGA
Found at i:18376412 original size:24 final size:24
Alignment explanation
Indices: 18376385--18376437 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
18376375 AAAATTAAGA
* *
18376385 AAAAGTTAAAAGTTA-AAAAACAAT
1 AAAAGTTAAAA-TAAGAAAAAAAAT
*
18376409 AAAACTTAAAATAAGAAAAAAAAT
1 AAAAGTTAAAATAAGAAAAAAAAT
18376433 AAAAG
1 AAAAG
18376438 AAAAGACAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.17
Consensus pattern (24 bp):
AAAAGTTAAAATAAGAAAAAAAAT
Found at i:18376635 original size:22 final size:20
Alignment explanation
Indices: 18376597--18376640 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
18376587 TCTTATATTA
*
18376597 TTAAAAAATTATATTTAACAT
1 TTAAAAAATAATATTTAA-AT
18376618 TTAAAAAATAATATTTTAAAT
1 TTAAAAAATAATA-TTTAAAT
18376639 TT
1 TT
18376641 TAAATTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAAAATAATATTTAAAT
Found at i:18376636 original size:53 final size:51
Alignment explanation
Indices: 18376575--18376677 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 51
18376565 CATATCTTTA
* * *
18376575 AATATTTAAATGTCTTATATTATTAAAAAAT-TATATTTAACATTTAAAAAAT
1 AATATTTAAAT-T-TTAAATTATTAAAAAATATATATTTAAAACTTAAAAAAT
* **
18376627 AATATTTTAAATTTTAAATTTTTTTAAAATATATATTTAAAACTTAAAAAA
1 AATA-TTTAAATTTTAAATTATTAAAAAATATATATTTAAAACTTAAAAAA
18376678 AAAGATTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
51 13 0.30
52 23 0.53
53 7 0.16
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (51 bp):
AATATTTAAATTTTAAATTATTAAAAAATATATATTTAAAACTTAAAAAAT
Found at i:18376925 original size:21 final size:20
Alignment explanation
Indices: 18376881--18376933 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
18376871 TTTTTTATTA
18376881 TTAAAAATATATATTTAATAT
1 TTAAAAATA-ATATTTAATAT
18376902 TTAATAAATAATATTTAA-ACT
1 TTAA-AAATAATATTTAATA-T
18376923 TTAAAAA-AATA
1 TTAAAAATAATA
18376934 ATTTCAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 4 0.13
20 4 0.13
21 17 0.57
22 5 0.17
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
TTAAAAATAATATTTAATAT
Found at i:18376932 original size:22 final size:21
Alignment explanation
Indices: 18376883--18376935 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
18376873 TTTTATTATT
18376883 AAAAATATATATTTAATATTTA
1 AAAAATA-ATATTTAATATTTA
*
18376905 ATAAATAATATTTAA-ACTTTAA
1 AAAAATAATATTTAATA-TTT-A
18376927 AAAAATAAT
1 AAAAATAAT
18376936 TTCAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 1 0.04
21 11 0.41
22 15 0.56
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAATAATATTTAATATTTA
Found at i:18377022 original size:65 final size:65
Alignment explanation
Indices: 18376947--18377105 Score: 225
Period size: 65 Copynumber: 2.4 Consensus size: 65
18376937 TCAAATATAT
* * *
18376947 ATTTAAAATTAAGAATAAAAAATAAATAAAAT-AAATAAGGATAAAGACAACATTTCA-ATTTTA
1 ATTTAAAATTAATAATAAAAAATAAATAAAATAAAATAAGGATAAAGACAAAATAT-ATA-TTTA
18377010 AA
64 AA
*
18377012 ATTTAAAATTAATAATAAATAATAAAT-AAATAAAATAAGGATAAAGACAAAATATATATTTAAA
1 ATTTAAAATTAATAATAAAAAATAAATAAAATAAAATAAGGATAAAGACAAAATATATATTTAAA
18377076 ATTTAAAATTAATAATAAATAAAATAAATA
1 ATTTAAAATTAATAAT-AA-AAAATAAATA
18377106 TATTTAAAAT
Statistics
Matches: 84, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
64 27 0.32
65 49 0.58
66 8 0.10
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.30
Consensus pattern (65 bp):
ATTTAAAATTAATAATAAAAAATAAATAAAATAAAATAAGGATAAAGACAAAATATATATTTAAA
Found at i:18377150 original size:752 final size:732
Alignment explanation
Indices: 18375749--18377212 Score: 2367
Period size: 752 Copynumber: 1.9 Consensus size: 732
18375739 AAATTTTAAA
18375749 TATATATTTTGTCTTTATCCTTATTTATTTTATTTATTTATTATAAAATATTATAAAATTAATAA
1 TATATATTTTGTCTTTATCCTTATTTATTTTATTTATTTATTATAAAATATTATAAAATTAATAA
*
18375814 TAAATTTGAAAGGTCATATCTTTAAATATTTAAATGTCTTATATTATTAAAAATTATATTTAACA
66 TAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTTATATTATTAAAAATTATATTTAACA
* *
18375879 TTTAAAAATAATATTTTAAATTTTAAATTTTTTAAAAATATATATCTAAAACTTCAAAAAAAGGA
131 TTTAAAAATAATATTTTAAATTTTAAATTTTTTAAAAATATATATCTAAAACTTAAAAAAAAAGA
* *
18375944 TTAAAAAATATATTATACAATATTTCAAATACACATTTCTAGTTTTTTAAAATTAATAATAATAA
196 TTAAAAAATATATTATACAATATTTCAAATACACATTTCAAGTTTTTTAAAATTAATAAGAATAA
18376009 ATAAATATATTTAATATTTAAAAAATAAATTTTAAATTTTAAAATATACATTTAAAATATTATAA
261 ATAAATATATTTAATATTTAAAAAATAAATTTTAAATTTTAAAATATACATTTAAAATATTATAA
18376074 AACTAATAATAACTTGAAAGGTCATATCTTTAAATATTTAAATATTTTTTATTATTAAAAATATA
326 AACTAATAATAACTTGAAAGGTCATATCTTTAAATATTTAAATATTTTTTATTATTAAAAATATA
18376139 TATTTAATATTTAATAAATAATATTTAAACTTTAAAAAAATAATTTCAAAATATATATTTAAAAT
391 TATTTAATATTTAATAAATAATATTTAAACTTTAAAAAAATAATTTCAAAATATATATTTAAAAT
18376204 TAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGACAACATTTAAATTTTAAAATTTAAAAT
456 TAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGACAACATTTAAATTTTAAAATTTAAAAT
18376269 TAATAATAAATAAATAAAATAAGGATAAAGACAAAATATATAATTAAAATTTAAAATTAATAATA
521 TAATAATAAATAAATAAAATAAGGATAAAGACAAAATATATAATTAAAATTTAAAATTAATAATA
*
18376334 AATAAATAAACAAATTTAAAATATACATTTAATGTTTTTTTAAAATTAAGAAAAAGTTAAAAGTT
586 AATAAATAAACAAATTTAAAATATACATTTAAAGTTTTTTTAAAATTAAG---AA--TAAAAGTT
18376399 AAAAAACAATAAAACTTAAAATAAGAAAAAAAATAAAAGAAAAGACAACTTAAAAAAAAGTAAAA
646 AAAAAACAATAAAACTTAAAATAAGAAAAAAAATAAAAGAAAAGACAACTTAAAAAAAAGTAAAA
18376464 AGGAAAAAATCAACAGACAAAC
711 AGGAAAAAATCAACAGACAAAC
18376486 TATATATTTTGTCTTTATCCTTATTT-TATTTATTTATTTATTATAAAATATTATAAAATTAATA
1 TATATATTTTGTCTTTATCCTTATTTAT-TTTATTTATTTATTATAAAATATTATAAAATTAATA
18376550 ATAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTTATATTATTAAAAAATTATATTTAA
65 ATAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTTATATTATT-AAAAATTATATTTAA
* *
18376615 CATTTAAAAAATAATATTTTAAATTTTAAATTTTTTTAAAATATATATTTAAAACTTAAAAAAAA
129 CATTT-AAAAATAATATTTTAAATTTTAAATTTTTTAAAAATATATATCTAAAACTTAAAAAAAA
18376680 AGATTAAAAAATATATTATACAATATTTCAAATACACATTTCAAGTTTTTTTAAAAGTAATAATA
193 AGATTAAAAAATATATTATACAATATTTCAAATACACATTTCAAG-TTTTTTAAAA-T--TAATA
* *
18376745 AGAATAAATAAAATTTATTTAATATTTATAAAATAAATTTTAAATTTTTAAATTTTCAAATATAC
254 AGAATAAAT-AAATATATTTAATA-TT-T-AAA-AAA---TAAA-TTTTAAATTTTAAAATATAC
* *
18376810 ATTTAAAATATTATAAAACTAATAATAAATTTGAAAGGTCATATCTTTAAATATTTAAATGTTTT
310 ATTTAAAATATTATAAAACTAATAAT-AACTTGAAAGGTCATATCTTTAAATATTTAAATATTTT
18376875 TTATTATTAAAAATATATATTTAATATTTAATAAATAATATTTAAACTTTAAAAAAATAATTTC-
374 TTATTATTAAAAATATATATTTAATATTTAATAAATAATATTTAAACTTTAAAAAAATAATTTCA
*
18376939 AAATATATATTTAAAATTAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGACAACATTTCA
439 AAATATATATTTAAAATTAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGACAACATTTAA
18377004 ATTTTAAAATTTAAAATTAATAATAAATAATAAATAAATAAAATAAGGATAAAGACAAAATATAT
504 ATTTTAAAATTT--AA--AAT--T-AATAATAAATAAATAAAATAAGGATAAAGACAAAATATAT
* * *
18377069 ATTTAAAATTTAAAATTAATAATAAATAAAATAAATATATTTAAAATATACATTTAAAG-TTTTT
562 AATTAAAATTTAAAATTAATAATAAAT-AAATAAACAAATTTAAAATATACATTTAAAGTTTTTT
* *
18377133 TAAAATTAAGAAAAAGTTAAAAGTTAAAAGTTAAAAAAAATAAAACTTAAAATAAGAAAAAGAAT
626 TAAAATTAAG---AA--TAAAAGTT---A---AAAAACAATAAAACTTAAAATAAGAAAAAAAAT
18377198 AAAAGAAAAAGACAA
680 AAAAG-AAAAGACAA
18377213 AGGTCAGCGC
Statistics
Matches: 677, Mismatches: 18, Indels: 35
0.93 0.02 0.05
Matches are distributed among these distances:
736 1 0.00
737 110 0.16
738 20 0.03
739 99 0.15
740 10 0.01
741 1 0.00
743 13 0.02
744 13 0.02
745 2 0.00
746 1 0.00
747 3 0.00
748 3 0.00
751 4 0.01
752 121 0.18
753 100 0.15
754 2 0.00
756 3 0.00
758 1 0.00
759 96 0.14
760 28 0.04
762 1 0.00
765 36 0.05
766 9 0.01
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (732 bp):
TATATATTTTGTCTTTATCCTTATTTATTTTATTTATTTATTATAAAATATTATAAAATTAATAA
TAAATTTGAAAGATCATATCTTTAAATATTTAAATGTCTTATATTATTAAAAATTATATTTAACA
TTTAAAAATAATATTTTAAATTTTAAATTTTTTAAAAATATATATCTAAAACTTAAAAAAAAAGA
TTAAAAAATATATTATACAATATTTCAAATACACATTTCAAGTTTTTTAAAATTAATAAGAATAA
ATAAATATATTTAATATTTAAAAAATAAATTTTAAATTTTAAAATATACATTTAAAATATTATAA
AACTAATAATAACTTGAAAGGTCATATCTTTAAATATTTAAATATTTTTTATTATTAAAAATATA
TATTTAATATTTAATAAATAATATTTAAACTTTAAAAAAATAATTTCAAAATATATATTTAAAAT
TAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGACAACATTTAAATTTTAAAATTTAAAAT
TAATAATAAATAAATAAAATAAGGATAAAGACAAAATATATAATTAAAATTTAAAATTAATAATA
AATAAATAAACAAATTTAAAATATACATTTAAAGTTTTTTTAAAATTAAGAATAAAAGTTAAAAA
ACAATAAAACTTAAAATAAGAAAAAAAATAAAAGAAAAGACAACTTAAAAAAAAGTAAAAAGGAA
AAAATCAACAGACAAAC
Done.