Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 67 of 343
Found at i:21772200 original size:25 final size:25
Alignment explanation
Indices: 21772171--21772233 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
21772161 AATAATATGC
21772171 CACAAAGGCTTCT-CAAAGAGTTC-T
1 CACAAAGGCTT-TACAAAGAGTTCGT
* *
21772195 CTACAAGGGCTTTACAGAGAGTTCGT
1 C-ACAAAGGCTTTACAAAGAGTTCGT
*
21772221 CACAAAGACTTTA
1 CACAAAGGCTTTA
21772234 GATAGAGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
24 2 0.06
25 28 0.88
26 2 0.06
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (25 bp):
CACAAAGGCTTTACAAAGAGTTCGT
Found at i:21779507 original size:21 final size:21
Alignment explanation
Indices: 21779483--21779522 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
21779473 CAATTTTCAA
21779483 AAAAAGTATCGATACCTTTCC
1 AAAAAGTATCGATACCTTTCC
*
21779504 AAAAAGTATCGATTCCTTT
1 AAAAAGTATCGATACCTTT
21779523 ACCAGGTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (21 bp):
AAAAAGTATCGATACCTTTCC
Found at i:21779507 original size:22 final size:21
Alignment explanation
Indices: 21779477--21779522 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
21779467 TGTTTTCAAT
21779477 TTTCAAAAAAAGTATCGATACC
1 TTTC-AAAAAAGTATCGATACC
* *
21779499 TTTCCAAAAAGTATCGATTCC
1 TTTCAAAAAAGTATCGATACC
21779520 TTT
1 TTT
21779523 ACCAGGTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
TTTCAAAAAAGTATCGATACC
Found at i:21782025 original size:265 final size:265
Alignment explanation
Indices: 21781552--21782078 Score: 955
Period size: 265 Copynumber: 2.0 Consensus size: 265
21781542 GCTTTGAGTC
* *
21781552 AGAAATCATTATTTGTTTTAAGAGCTTTAAATACTCGTTTGATGCTTGTTGATGATGGTTATATT
1 AGAAATCATTATTTGTTTTAAGAGCTTTAAATACTCGTTTGACGCTTGTTGATGACGGTTATATT
21781617 TTAGCTGAACTAAAAACTAAACCGATGTTTCTACAACAAATCTGTGAAGCTCAGAAAACTAATCT
66 TTAGCTGAACTAAAAACTAAACCGATGTTTCTACAACAAATCTGTGAAGCTCAGAAAACTAATCT
* * *
21781682 TGAATTTATTGCTAAACAAGGATAGATTGAAAAGTCATCAGATTTAGATTTTCACATTGGTACAG
131 CGAATTTATTGCTAAACAAGAATAGATTGAAAAGTCATCAGATTCAGATTTTCACATTGGTACAG
21781747 ATGATAGTTTGTATTTCCGGAACAAAATATGTGTTTCGAAGAATTCTTAAGTTAAGTAGAACATT
196 ATGATAGTTTGTATTTCCGGAACAAAATATGTGTTTCGAAGAATTCTTAAGTTAAGTAGAACATT
21781812 ATACG
261 ATACG
21781817 AGAAATCATTATTTGTTTTAAGAGCTTTAAATACTCGTTTGACGCTTGTTGATGACGGTTATATT
1 AGAAATCATTATTTGTTTTAAGAGCTTTAAATACTCGTTTGACGCTTGTTGATGACGGTTATATT
* * *
21781882 TTAGCTGAACTAAAAACTAAACCGATGTTTCTACAACAAATCTGTGAGGCTTAGAAAACTGATCT
66 TTAGCTGAACTAAAAACTAAACCGATGTTTCTACAACAAATCTGTGAAGCTCAGAAAACTAATCT
* *
21781947 CGAGTTTATTGCTAAACAAGAATAGATTGAAAAGTCATTAGATTCAGATTTTCACATTGGTACAG
131 CGAATTTATTGCTAAACAAGAATAGATTGAAAAGTCATCAGATTCAGATTTTCACATTGGTACAG
*
21782012 ATGATAGTTTGTATTTCCGGAACAAAATATGTGTTTCGAAGAATTCTTATGTTAAGTAGAACATT
196 ATGATAGTTTGTATTTCCGGAACAAAATATGTGTTTCGAAGAATTCTTAAGTTAAGTAGAACATT
21782077 AT
261 AT
21782079 GTGGGAAGCT
Statistics
Matches: 251, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
265 251 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (265 bp):
AGAAATCATTATTTGTTTTAAGAGCTTTAAATACTCGTTTGACGCTTGTTGATGACGGTTATATT
TTAGCTGAACTAAAAACTAAACCGATGTTTCTACAACAAATCTGTGAAGCTCAGAAAACTAATCT
CGAATTTATTGCTAAACAAGAATAGATTGAAAAGTCATCAGATTCAGATTTTCACATTGGTACAG
ATGATAGTTTGTATTTCCGGAACAAAATATGTGTTTCGAAGAATTCTTAAGTTAAGTAGAACATT
ATACG
Found at i:21786585 original size:17 final size:17
Alignment explanation
Indices: 21786563--21786595 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
21786553 CACTAACATT
21786563 AAAATGCAATGAAAATA
1 AAAATGCAATGAAAATA
21786580 AAAATGCAATGAAAAT
1 AAAATGCAATGAAAAT
21786596 GTGCACTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (17 bp):
AAAATGCAATGAAAATA
Found at i:21789192 original size:14 final size:16
Alignment explanation
Indices: 21789173--21789211 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
21789163 AAGAAAATGA
*
21789173 TGATATATGACA-A-G
1 TGATATATGAAATATG
21789187 TGATATATGAAATATG
1 TGATATATGAAATATG
21789203 TGATATATG
1 TGATATATG
21789212 TTATGTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.36
Consensus pattern (16 bp):
TGATATATGAAATATG
Found at i:21789592 original size:49 final size:49
Alignment explanation
Indices: 21789520--21789706 Score: 230
Period size: 49 Copynumber: 3.8 Consensus size: 49
21789510 TGAGGTCACG
* *
21789520 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * * * * * *
21789569 TGTGTAGTACTAAATGTAAGCTACTATGCGTACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-TGGTCGCA
* *
21789620 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
*
21789669 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT
21789707 CGCTTCGGCT
Statistics
Matches: 114, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 75 0.66
50 2 0.02
51 37 0.32
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:21789692 original size:100 final size:100
Alignment explanation
Indices: 21789515--21789702 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
21789505 TATTGTGAGG
*
21789515 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
21789580 AAATGTAAGCTACTATGCGTACCCGAAAACTATGA
66 AAATGCAAGCTACTATGCGTACCCGAAAACTATGA
*
21789615 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
* *
21789680 AAGTGCAGGCTACTATGCGTACC
66 AAATGCAAGCTACTATGCGTACC
21789703 AGATCGCTTC
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAATGCAAGCTACTATGCGTACCCGAAAACTATGA
Found at i:21797882 original size:13 final size:13
Alignment explanation
Indices: 21797864--21797888 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21797854 CAAAATCTAA
21797864 AAAATGAGAGAAG
1 AAAATGAGAGAAG
21797877 AAAATGAGAGAA
1 AAAATGAGAGAA
21797889 TTAGCCTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.28, T:0.08
Consensus pattern (13 bp):
AAAATGAGAGAAG
Found at i:21798315 original size:19 final size:19
Alignment explanation
Indices: 21798291--21798327 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
21798281 ATAATAGAGA
* *
21798291 GTGGTTGGTTGATTTCCAT
1 GTGGTTGATTGAATTCCAT
21798310 GTGGTTGATTGAATTCCA
1 GTGGTTGATTGAATTCCA
21798328 AATTAAGCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.11, G:0.30, T:0.43
Consensus pattern (19 bp):
GTGGTTGATTGAATTCCAT
Found at i:21799444 original size:20 final size:20
Alignment explanation
Indices: 21799393--21799445 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
21799383 GGAGCAATGC
* *
21799393 ACACGCCCGTGTGCTTTGGG
1 ACACACCCGTGTGCTTTAGG
*
21799413 ACACTCCCGTGTGCTTTAGG
1 ACACACCCGTGTGCTTTAGG
*
21799433 ACACACCTGTGTG
1 ACACACCCGTGTG
21799446 GAATTAATTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.15, C:0.30, G:0.28, T:0.26
Consensus pattern (20 bp):
ACACACCCGTGTGCTTTAGG
Found at i:21812894 original size:47 final size:48
Alignment explanation
Indices: 21812823--21813092 Score: 247
Period size: 47 Copynumber: 5.8 Consensus size: 48
21812813 GGTGAGGTGC
** *
21812823 CGATGCCATGTCTTAGACATGGTCTTACACTGGCTCAT-ATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAAGT
* * *
21812870 CAATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCATCTCATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCA-AGT
* * * *
21812918 CGATG-CATGTCCCAGACAT-GTCTTACACTTGCTTA-CGTCTCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-AAGT
* * *
21812964 CGATG-CATGTCCTAGACAT-GTCTTACACTAGC-CCTCGTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAA-GT
* * ***
21813010 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCAT-CTCAAGT
**
21813058 CGATG-CATGTCCCAGACAT-GTCTTATGCTAGCTCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
21813093 CACACGAATG
Statistics
Matches: 185, Mismatches: 27, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 75 0.41
47 79 0.43
48 28 0.15
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAAGT
Found at i:21812968 original size:46 final size:45
Alignment explanation
Indices: 21812876--21813082 Score: 202
Period size: 46 Copynumber: 4.4 Consensus size: 45
21812866 AAGTCAATGC
* * * *
21812876 CATGTCCCAGACATGGTCTTACACTAACTATCATCTC-ATAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCT-TCGTCTCGA-GGTCGATG
*
21812923 CATGTCCCAGACATGTCTTACACTTGCTTACGTCTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-CGTCTCGAGGTCGATG
* * * *
21812969 CATGTCCTAGACATGTCTTACACTAGCCCTCGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAG-CTTCGTCTCGAGGTCGATG
* * * *
21813015 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCT-TCGT-CTCGAGGTCGATG
21813063 CATGTCCCAGACATGTCTTA
1 CATGTCCCAGACATGTCTTA
21813083 TGCTAGCTCA
Statistics
Matches: 135, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 67 0.50
47 45 0.33
48 21 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCGTCTCGAGGTCGATG
Found at i:21813018 original size:140 final size:141
Alignment explanation
Indices: 21812823--21813082 Score: 357
Period size: 140 Copynumber: 1.9 Consensus size: 141
21812813 GGTGAGGTGC
* *
21812823 CGATGCCATGTCTTAGACATGGTCTTACACTGGCTCATATCTCAAGTCAATGCCATGTCCCAGAC
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAGTCAATGCCATGTCCCAGAC
*
21812888 ATGGTCTTACACTAACTATCAT-CTCATAGCCGATGCATGTCCCAGACATGTCTTACACTTGCTT
66 ATGGTCTTACACTAACTATCATAAT-ATAGCCGATGCATGTCCCAGACATGTCTTACACTTGCTT
21812952 ACGTCTCGAGGT
130 ACGTCTCGAGGT
* * *
21812964 CGATG-CATGTCCTAGACAT-GTCTTACACTAGC-CCTCGTCTCAATGTCGATGCCATGTCCCAG
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GTCAATGCCATGTCCCAG
** * * * *
21813026 ACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCAGACATGTCTTA
64 ACATGGTCTTACACTAACTATCATAATATAGCCGATGCATGTCCCAGACATGTCTTA
21813083 TGCTAGCTCA
Statistics
Matches: 104, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
138 2 0.02
139 18 0.17
140 78 0.75
141 6 0.06
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (141 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAGTCAATGCCATGTCCCAGAC
ATGGTCTTACACTAACTATCATAATATAGCCGATGCATGTCCCAGACATGTCTTACACTTGCTTA
CGTCTCGAGGT
Found at i:21819167 original size:47 final size:48
Alignment explanation
Indices: 21819116--21819328 Score: 181
Period size: 46 Copynumber: 4.5 Consensus size: 48
21819106 AAGTCAATGC
*
21819116 CATGTCCCAGACATGGTCTTACACTA-ACTATCATCACGTA-GCCGATG
1 CATGTCCTAGACAT-GTCTTACACTAGACTATCATCACGTAGGCCGATG
* ** * *
21819163 CATGTCCCAGACATGTCTTACACTAGTTTAT-GTCTCG-AGGCCGATG
1 CATGTCCTAGACATGTCTTACACTAGACTATCATCACGTAGGCCGATG
* * * * * *
21819209 CATGTCCTAGACATGTCTTACACTAGCCT-TCGTCTC-AATGCCGGTG
1 CATGTCCTAGACATGTCTTACACTAGACTATCATCACGTAGGCCGATG
* * * * *
21819255 CCATTTCCTAGACATGGTCTTACACT-GGCTCTCATAATGT-GGCCGATG
1 -CATGTCCTAGACAT-GTCTTACACTAGACTATCATCACGTAGGCCGATG
*
21819303 CATGTCCTAGACATGTCTTACGCTAG
1 CATGTCCTAGACATGTCTTACACTAG
21819329 CTCACACACG
Statistics
Matches: 137, Mismatches: 20, Indels: 18
0.78 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 69 0.50
47 47 0.34
48 19 0.14
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (48 bp):
CATGTCCTAGACATGTCTTACACTAGACTATCATCACGTAGGCCGATG
Found at i:21827056 original size:42 final size:42
Alignment explanation
Indices: 21826997--21827115 Score: 148
Period size: 42 Copynumber: 2.8 Consensus size: 42
21826987 AGGTTATGTG
* *
21826997 TGATTTCGTGTAAGACCATATCTAGGATATGGCATCGATACA
1 TGATTTCGTGTAAGACCATATATGGGATATGGCATCGATACA
* * * * *
21827039 TGATTTCGTGTAAGACCATGTTTGGGACATGGCATTGATACG
1 TGATTTCGTGTAAGACCATATATGGGATATGGCATCGATACA
* **
21827081 GGACATCGTGTAAGACCATATATGGGATATGGCAT
1 TGATTTCGTGTAAGACCATATATGGGATATGGCAT
21827116 TGGCATCTTA
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATATATGGGATATGGCATCGATACA
Found at i:21827449 original size:196 final size:196
Alignment explanation
Indices: 21827103--21827484 Score: 701
Period size: 196 Copynumber: 1.9 Consensus size: 196
21827093 AGACCATATA
* * *
21827103 TGGGATATGGCATTGGCATCTTACTATGTGTACAAGAATTCTCGGGTATCCTTTAGCATTCCAAG
1 TGGGAAATGGCATTGGCATCATACTATGTGTACAAGAATTCCCGGGTATCCTTTAGCATTCCAAG
*
21827168 TGGTTCAACGGGTAATTTAAAGGTTATGTTAATGATGTGAAAGGCTATGATTACGTTATGAAGTG
66 TGGTTCAACGGGTAATTTAAAGATTATGTTAATGATGTGAAAGGCTATGATTACGTTATGAAGTG
21827233 GCACAGGTATGTACGCAAAACTCATTGGAAATGAGCTCGATTTATGATGCATTATCATGTGTACT
131 GCACAGGTATGTACGCAAAACTCATTGGAAATGAGCTCGATTTATGATGCATTATCATGTGTACT
21827298 C
196 C
*
21827299 TGGGAAATGGCATTGGCATCATACTATGTGTACAAGATTTCCCGGGTATCCTTTAGCATTCCAAG
1 TGGGAAATGGCATTGGCATCATACTATGTGTACAAGAATTCCCGGGTATCCTTTAGCATTCCAAG
21827364 TGGTTCAACGGGTAATTTAAAGATTATGTTAATGATGTGAAAGGCTATGATTACGTTATGAAGTG
66 TGGTTCAACGGGTAATTTAAAGATTATGTTAATGATGTGAAAGGCTATGATTACGTTATGAAGTG
* *
21827429 GTACAGGTATGTATGCAAAACTCATTGGAAATGAGCTCGATTTATGATGCATTATC
131 GCACAGGTATGTACGCAAAACTCATTGGAAATGAGCTCGATTTATGATGCATTATC
21827485 GGTAAGGATG
Statistics
Matches: 179, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
196 179 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (196 bp):
TGGGAAATGGCATTGGCATCATACTATGTGTACAAGAATTCCCGGGTATCCTTTAGCATTCCAAG
TGGTTCAACGGGTAATTTAAAGATTATGTTAATGATGTGAAAGGCTATGATTACGTTATGAAGTG
GCACAGGTATGTACGCAAAACTCATTGGAAATGAGCTCGATTTATGATGCATTATCATGTGTACT
C
Found at i:21837037 original size:33 final size:36
Alignment explanation
Indices: 21836970--21837042 Score: 116
Period size: 33 Copynumber: 2.1 Consensus size: 36
21836960 AACACATTAA
*
21836970 AAATGTTATATTAAAAAACACTACCATAAATATAAT
1 AAATGTTATATTAAAAAACACTACAATAAATATAAT
21837006 AAATGTT-TATTAAAAAACAC-A-AATAAATATAAT
1 AAATGTTATATTAAAAAACACTACAATAAATATAAT
21837039 AAAT
1 AAAT
21837043 ATTTTATTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
33 15 0.42
34 1 0.03
35 13 0.36
36 7 0.19
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.30
Consensus pattern (36 bp):
AAATGTTATATTAAAAAACACTACAATAAATATAAT
Found at i:21837228 original size:23 final size:23
Alignment explanation
Indices: 21837170--21837228 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
21837160 TTAGTGATTC
*
21837170 AATATAAATATAAATAATAATTAT
1 AATAT-AATATATATAATAATTAT
* * *
21837194 TATTTAACATATATAATTAA-TAT
1 AATATAATATATATAA-TAATTAT
21837217 AATATAATATAT
1 AATATAATATAT
21837229 TCGGGTCGGG
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
AATATAATATATATAATAATTAT
Found at i:21843820 original size:43 final size:46
Alignment explanation
Indices: 21843730--21843839 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 46
21843720 TTATTTTAAA
21843730 AAATGTCGCTAAAGGTCATGGCCTTTTAATTAGCGGCGCTTTACCCAC
1 AAATGTCGCTAAAGGTCATGGCC-TTT-ATTAGCGGCGCTTTACCCAC
* * *
21843778 AAATGCCGCTAAAGGTCATGG-C-TT-TTAGTGGCGCTTTTCCCAC
1 AAATGTCGCTAAAGGTCATGGCCTTTATTAGCGGCGCTTTACCCAC
* *
21843821 AAACGTCGCTAAATGTCAT
1 AAATGTCGCTAAAGGTCAT
21843840 AAATTCAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
43 33 0.59
45 2 0.04
47 1 0.02
48 20 0.36
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (46 bp):
AAATGTCGCTAAAGGTCATGGCCTTTATTAGCGGCGCTTTACCCAC
Found at i:21843915 original size:26 final size:23
Alignment explanation
Indices: 21843870--21843918 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 23
21843860 AAATATTATA
21843870 AATGTCATGAAAAATATAAAAAT
1 AATGTCATGAAAAATATAAAAAT
21843893 AATGTCCATGATATAAATATAAAAAT
1 AATGT-CATGA-A-AAATATAAAAAT
21843919 TTTCTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.22
24 5 0.22
25 1 0.04
26 12 0.52
ACGTcount: A:0.57, C:0.06, G:0.08, T:0.29
Consensus pattern (23 bp):
AATGTCATGAAAAATATAAAAAT
Found at i:21844138 original size:18 final size:19
Alignment explanation
Indices: 21844078--21844141 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
21844068 TAAATATTAA
* ** *
21844078 AATAAAAACAAAAATTTAG
1 AATAAAAACTAAAATAAAT
*
21844097 AATCAAAACTAAAATAAAT
1 AATAAAAACTAAAATAAAT
* *
21844116 AATAAAAACTAGATTAAAT
1 AATAAAAACTAAAATAAAT
21844135 -ATAAAAA
1 AATAAAAA
21844142 TATTAATAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
18 7 0.19
19 30 0.81
ACGTcount: A:0.69, C:0.06, G:0.03, T:0.22
Consensus pattern (19 bp):
AATAAAAACTAAAATAAAT
Found at i:21855149 original size:18 final size:19
Alignment explanation
Indices: 21855112--21855150 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
21855102 AAATCATATT
21855112 TATTATTTTCATATAAAAA
1 TATTATTTTCATATAAAAA
*
21855131 TATTATTTTGATA-AAAAA
1 TATTATTTTCATATAAAAA
21855149 TA
1 TA
21855151 AAAAAGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TATTATTTTCATATAAAAA
Found at i:21855759 original size:24 final size:24
Alignment explanation
Indices: 21855731--21855779 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
21855721 CCAAAATAAC
*
21855731 AATTAATTTTTATATAAACTTTTA
1 AATTAAGTTTTATATAAACTTTTA
21855755 AATTAAGTTTTATATAAACTTTTA
1 AATTAAGTTTTATATAAACTTTTA
21855779 A
1 A
21855780 CAAATATACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (24 bp):
AATTAAGTTTTATATAAACTTTTA
Found at i:21856530 original size:41 final size:40
Alignment explanation
Indices: 21856464--21856541 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 40
21856454 TGGTTTGTAA
*
21856464 CGGCGTTTTACCAAAAGCGCTGCTAATGCTCTAGTTTTTAG
1 CGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GTTTTTAG
**
21856505 CGGCGTTTTACCAAAATTGCCGCTAATGCTCTGTTTT
1 CGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTTTT
21856542 CCTGTAGTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 5 0.15
41 29 0.85
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (40 bp):
CGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTTTTTAG
Found at i:21861369 original size:25 final size:26
Alignment explanation
Indices: 21861341--21861399 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 26
21861331 CCATATTAAC
21861341 AAATAATTTTAAAATAT-AAAAATAA
1 AAATAATTTTAAAATATAAAAAATAA
* * *
21861366 AAATTA-TTTAAAATTTAAAAAATAT
1 AAATAATTTTAAAATATAAAAAATAA
21861391 AAA-AATTTT
1 AAATAATTTT
21861400 TATAAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 10 0.36
25 18 0.64
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (26 bp):
AAATAATTTTAAAATATAAAAAATAA
Found at i:21861401 original size:19 final size:20
Alignment explanation
Indices: 21861379--21861417 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
21861369 TTATTTAAAA
21861379 TTTA-AAAAATATAAAAATT
1 TTTATAAAAATATAAAAATT
*
21861398 TTTATAAAAATTTAAAAATT
1 TTTATAAAAATATAAAAATT
21861418 AGTATGAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TTTATAAAAATATAAAAATT
Found at i:21861414 original size:27 final size:24
Alignment explanation
Indices: 21861348--21861416 Score: 75
Period size: 27 Copynumber: 2.7 Consensus size: 24
21861338 AACAAATAAT
*
21861348 TTTAAAATATAAAAATAAAAATTA
1 TTTAAAATTTAAAAATAAAAATTA
*
21861372 TTTAAAATTTAAAAAATATAAAAATTT
1 TTTAAAATTT--AAAA-ATAAAAATTA
21861399 TTATAAAAATTTAAAAAT
1 TT-T-AAAATTTAAAAAT
21861417 TAGTATGAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
24 9 0.24
26 6 0.16
27 15 0.39
28 1 0.03
29 7 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
TTTAAAATTTAAAAATAAAAATTA
Found at i:21866746 original size:25 final size:25
Alignment explanation
Indices: 21866710--21866758 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
21866700 TAAAAAATGA
*
21866710 GTATGCTCTTCGATAGCGTTTTTTC
1 GTATGCTCTTCGATAGCATTTTTTC
* *
21866735 GTATGCTTTTCGGTAGCATTTTTT
1 GTATGCTCTTCGATAGCATTTTTT
21866759 TTTCATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.12, C:0.16, G:0.20, T:0.51
Consensus pattern (25 bp):
GTATGCTCTTCGATAGCATTTTTTC
Found at i:21871364 original size:46 final size:46
Alignment explanation
Indices: 21871297--21871388 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
21871287 TTGGCTAAAA
21871297 GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC
1 GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC
*
21871343 GTCTTTGATACGAACAATATATGGAGCTAGTTTGGTTTTCTCTTTC
1 GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC
21871389 AGAAGAGCTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.43
Consensus pattern (46 bp):
GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC
Found at i:21878830 original size:49 final size:49
Alignment explanation
Indices: 21878758--21878856 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
21878748 AAGTGTGAGA
21878758 GAAGGGTTAAAAGGCTGAATGATTAATAATGTAGTCAAAATTAAGAATG
1 GAAGGGTTAAAAGGCTGAATGATTAATAATGTAGTCAAAATTAAGAATG
*
21878807 GAAGGGTTCAAAGGCTGAATGATTAATAATGTAGTCAAAATTAAGAATG
1 GAAGGGTTAAAAGGCTGAATGATTAATAATGTAGTCAAAATTAAGAATG
21878856 G
1 G
21878857 GTTAATAAGT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.43, C:0.05, G:0.25, T:0.26
Consensus pattern (49 bp):
GAAGGGTTAAAAGGCTGAATGATTAATAATGTAGTCAAAATTAAGAATG
Found at i:21882214 original size:14 final size:14
Alignment explanation
Indices: 21882195--21882228 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
21882185 CATGTTCTGT
21882195 GAAAATTTTGATAC
1 GAAAATTTTGATAC
21882209 GAAAATTTTGATAC
1 GAAAATTTTGATAC
21882223 GAAAAT
1 GAAAAT
21882229 CTTATCGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (14 bp):
GAAAATTTTGATAC
Found at i:21890568 original size:43 final size:43
Alignment explanation
Indices: 21890459--21890613 Score: 258
Period size: 43 Copynumber: 3.6 Consensus size: 43
21890449 GCTGGTATTA
* *
21890459 TATTTGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
21890502 TATTC-GGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
*
21890544 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
* *
21890587 TAGTCGGACCTTCGTGCCTAGCAGGCT
1 TATTCGGGCCTTCGTGCCTAGCAGGCT
21890614 ATGATGCTGG
Statistics
Matches: 106, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
42 41 0.39
43 65 0.61
ACGTcount: A:0.11, C:0.25, G:0.33, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
Found at i:21896607 original size:6 final size:6
Alignment explanation
Indices: 21896598--21896634 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
21896588 TAAGTCTAAG
*
21896598 AAAATA AAAATA AACAT- AAAATA AAAAT- AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
21896635 CAAATGGACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 9 0.33
6 18 0.67
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:21896620 original size:11 final size:11
Alignment explanation
Indices: 21896598--21896634 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
21896588 TAAGTCTAAG
21896598 AAAATAAAAATA
1 AAAAT-AAAATA
*
21896610 AACATAAAATA
1 AAAATAAAATA
21896621 AAAATAAAATA
1 AAAATAAAATA
21896632 AAA
1 AAA
21896635 CAAATGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:21896620 original size:17 final size:16
Alignment explanation
Indices: 21896598--21896634 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 16
21896588 TAAGTCTAAG
21896598 AAAATAAAAATAAACAT
1 AAAATAAAAATAAA-AT
21896615 AAAATAAAAATAAAAT
1 AAAATAAAAATAAAAT
21896631 AAAA
1 AAAA
21896635 CAAATGGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAATAAAAATAAAAT
Found at i:21903419 original size:37 final size:37
Alignment explanation
Indices: 21903369--21903444 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
21903359 ACTTAGCCAT
*
21903369 TGGAATGGCTAAGGATGTTCAAGTAGTGCATGTATGA
1 TGGAATGGCTAAGGATGTTCAAGTAGTGAATGTATGA
21903406 TGGAATGGCTAAGGATGTTCAAGTAGTGAATGTATGA
1 TGGAATGGCTAAGGATGTTCAAGTAGTGAATGTATGA
21903443 TG
1 TG
21903445 TTAACGTATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.30, C:0.07, G:0.33, T:0.30
Consensus pattern (37 bp):
TGGAATGGCTAAGGATGTTCAAGTAGTGAATGTATGA
Found at i:21908450 original size:43 final size:43
Alignment explanation
Indices: 21908395--21908481 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
21908385 ATATCGTACA
**
21908395 ATGCCAACGTCCCAGAC-GTGGTCTTACAT-GTAGCCACATATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTAC-TCGTAAACACATATCG
21908438 ATGCC-ACTGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACTCGTAAACACATATCG
21908481 A
1 A
21908482 AATCACAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 3 0.08
43 35 0.90
44 1 0.03
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
Found at i:21913219 original size:24 final size:24
Alignment explanation
Indices: 21913183--21913228 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
21913173 TAAACTAAAA
*
21913183 ACAACTAACAATAAAAATAAAAGT
1 ACAACTAACAATAAAAAGAAAAGT
21913207 ACAACTGAA-AATAAAAAGAAAA
1 ACAACT-AACAATAAAAAGAAAA
21913229 AAAATAAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.70, C:0.11, G:0.07, T:0.13
Consensus pattern (24 bp):
ACAACTAACAATAAAAAGAAAAGT
Found at i:21913487 original size:33 final size:33
Alignment explanation
Indices: 21913405--21913488 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 33
21913395 CCAAATGTAA
*
21913405 CTGCTTAAGGCGATCTATCCACACTGTCTGTTG
1 CTGCTCAAGGCGATCTATCCACACTGTCTGTTG
** * *
21913438 CTATTCAAGGCAATCTATCCACTCTGTCTGTTG
1 CTGCTCAAGGCGATCTATCCACACTGTCTGTTG
*
21913471 CTGCTCAATGCGATCTAT
1 CTGCTCAAGGCGATCTAT
21913489 TCGATCAGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (33 bp):
CTGCTCAAGGCGATCTATCCACACTGTCTGTTG
Found at i:21914883 original size:20 final size:22
Alignment explanation
Indices: 21914846--21914885 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
21914836 GACTAATAAG
*
21914846 AAACACAATAATAGTAATAATA
1 AAACACAATAATAATAATAATA
21914868 AAACA-AAT-ATAATAATAA
1 AAACACAATAATAATAATAA
21914886 AATTATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 3 0.18
22 5 0.29
ACGTcount: A:0.68, C:0.07, G:0.03, T:0.23
Consensus pattern (22 bp):
AAACACAATAATAATAATAATA
Found at i:21915905 original size:18 final size:19
Alignment explanation
Indices: 21915865--21915907 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
21915855 CTTTTTTAAT
**
21915865 TTTTTTTGAATTTTCTTTA
1 TTTTTTTGAATTTTCTGAA
21915884 -TTTTTTGAATTTT-TGAA
1 TTTTTTTGAATTTTCTGAA
21915901 TTTTTTT
1 TTTTTTT
21915908 AAAGACGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.74
Consensus pattern (19 bp):
TTTTTTTGAATTTTCTGAA
Found at i:21918722 original size:5 final size:6
Alignment explanation
Indices: 21918689--21918735 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
21918679 AGAGTCAAAC
* * *
21918689 AAAAGA AAAATTA AAAATT AAACTA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAA-TA AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
21918736 GGACTAAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
6 30 0.86
7 5 0.14
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:21924140 original size:47 final size:47
Alignment explanation
Indices: 21924086--21924676 Score: 993
Period size: 47 Copynumber: 12.6 Consensus size: 47
21924076 TATTTGAATA
* * *
21924086 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
21924133 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
21924180 AATGTGAAAGTGTATATGTGTGATAAGGCCTAATCGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
21924227 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
21924274 AATGTGAAAGTGTCTATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
21924321 AATGTGAAAGTGTATATATGTGTTAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
21924368 AATGTGAAAGTGTCTATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
21924415 AATGTGAAAGTGTCTATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
21924462 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
21924509 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
21924556 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
21924603 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
21924650 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
21924677 TCCCGAAGGG
Statistics
Matches: 517, Mismatches: 27, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 517 1.00
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:21924272 original size:22 final size:22
Alignment explanation
Indices: 21924244--21924317 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
21924234 AAGTGTATAT
21924244 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** * **
21924266 ATGTGATGAATGTGAAAGTGTCTAT
1 ATGTGAT-AAGGCCTAA-TGGC-CG
21924291 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
21924313 ATGTG
1 ATGTG
21924318 GTGAATGTGA
Statistics
Matches: 35, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 12 0.34
23 8 0.23
24 8 0.23
25 7 0.20
ACGTcount: A:0.28, C:0.12, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:21927426 original size:17 final size:15
Alignment explanation
Indices: 21927388--21927426 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
21927378 TAAAATAACA
21927388 TAAAATAATTGAATT
1 TAAAATAATTGAATT
*
21927403 AAAAATAATTGAACATT
1 TAAAATAATTG-A-ATT
21927420 TAAAATA
1 TAAAATA
21927427 CAAAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 10 0.50
16 1 0.05
17 9 0.45
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (15 bp):
TAAAATAATTGAATT
Found at i:21928359 original size:2 final size:2
Alignment explanation
Indices: 21928354--21928429 Score: 89
Period size: 2 Copynumber: 38.0 Consensus size: 2
21928344 CACACACACA
* * *
21928354 CT CT CT CT CT CT CT CT CT CT CT CC CC CT CT CT CT CC CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
21928396 CT CT CC CT CT CT CT CT CC CC CT CT CT CT AT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
21928430 AATTTAATTT
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.01, C:0.57, G:0.00, T:0.42
Consensus pattern (2 bp):
CT
Found at i:21928371 original size:12 final size:12
Alignment explanation
Indices: 21928354--21928423 Score: 113
Period size: 12 Copynumber: 5.8 Consensus size: 12
21928344 CACACACACA
*
21928354 CTCTCTCTCTCT
1 CTCTCTCTCTCC
21928366 CTCTCTCTCTCC
1 CTCTCTCTCTCC
*
21928378 CCCTCTCTCTCC
1 CTCTCTCTCTCC
21928390 CTCTCTCTCTCC
1 CTCTCTCTCTCC
21928402 CTCTCTCTCTCC
1 CTCTCTCTCTCC
*
21928414 CCCTCTCTCT
1 CTCTCTCTCT
21928424 ATCTCTAATT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 54 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (12 bp):
CTCTCTCTCTCC
Found at i:21931289 original size:69 final size:69
Alignment explanation
Indices: 21931130--21931332 Score: 234
Period size: 68 Copynumber: 3.0 Consensus size: 69
21931120 TGTTTGAAAT
* * * *
21931130 TTGACAATTTTATTGTTAAAATGGCTATTG-TCTGATGGTGTGTGAGAGGCATTTAAACT-ACCA
1 TTGACAATTTTATTGTTAAAATGGCTGTTGTTC-GATGGTGTGTGAAAAGCATTTAAACTGTCCA
*
21931193 AATTG
65 AATTA
* * * * *
21931198 TTGACAGTTTTATTGTTAAAATGGTTGTTGTTCGGTGGTGTGTGAAACGCATTTAAACTGTTCAA
1 TTGACAATTTTATTGTTAAAATGGCTGTTGTTCGATGGTGTGTGAAAAGCATTTAAACTGTCCAA
*
21931263 TTTA
66 ATTA
* * * *
21931267 TTGACAATTTTATTGCTAAAATGACTGATGTTCGAT-G-GTGTGAAAAGCGTTTAAACTGTCCAA
1 TTGACAATTTTATTGTTAAAATGGCTGTTGTTCGATGGTGTGTGAAAAGCATTTAAACTGTCCAA
21931330 ATT
66 ATT
21931333 GATAATGAAA
Statistics
Matches: 113, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
67 25 0.22
68 51 0.45
69 37 0.33
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (69 bp):
TTGACAATTTTATTGTTAAAATGGCTGTTGTTCGATGGTGTGTGAAAAGCATTTAAACTGTCCAA
ATTA
Found at i:21936844 original size:16 final size:17
Alignment explanation
Indices: 21936821--21936869 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
21936811 CGGAGCAATA
21936821 GATGATGGCAGGTTGTG
1 GATGATGGCAGGTTGTG
21936838 G-TGATGGCCAGGGTTGTG
1 GATGATGG-CA-GGTTGTG
*
21936856 GATGA-GGCAAGTTG
1 GATGATGGCAGGTTG
21936870 GTTTGGTACG
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 10 0.36
17 5 0.18
18 10 0.36
19 3 0.11
ACGTcount: A:0.18, C:0.08, G:0.47, T:0.27
Consensus pattern (17 bp):
GATGATGGCAGGTTGTG
Found at i:21940503 original size:21 final size:20
Alignment explanation
Indices: 21940459--21940504 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
21940449 CGCTCAATTT
*
21940459 ATTTTATTTTATATATAAAT
1 ATTTTATTTTATATATAAAG
* *
21940479 ATTTTATATTTATATTTATAG
1 ATTTTAT-TTTATATATAAAG
21940500 ATTTT
1 ATTTT
21940505 TGTTCGCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
ATTTTATTTTATATATAAAG
Found at i:21943480 original size:108 final size:108
Alignment explanation
Indices: 21943313--21943525 Score: 354
Period size: 108 Copynumber: 2.0 Consensus size: 108
21943303 ACTAAAATCT
* *
21943313 CACATTCTCCCACTTGACCCAATGAGATAAAATGTAAAATTTAATGAAATAAACATTGAGCGTGA
1 CACATTCTCCCACTTGACCCAATAAGATAAAATGTAAAATTTAATGAAATAAACATTGAGCGCGA
21943378 ATAAAAATAACACTCATCATAATTACAAAATTATAGTGAACTA
66 ATAAAAATAACACTCATCATAATTACAAAATTATAGTGAACTA
* * * *
21943421 CACATTCTCCCACTTGACCCAATAAGGTAAAATGTAAATTTTAATGAAATAAACGTTGAGCGCGC
1 CACATTCTCCCACTTGACCCAATAAGATAAAATGTAAAATTTAATGAAATAAACATTGAGCGCGA
* *
21943486 ATAAAATTAATACTCATCATAATTACAAAATTATAGTGAA
66 ATAAAAATAACACTCATCATAATTACAAAATTATAGTGAA
21943526 TTGCAAATGT
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 97 1.00
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.28
Consensus pattern (108 bp):
CACATTCTCCCACTTGACCCAATAAGATAAAATGTAAAATTTAATGAAATAAACATTGAGCGCGA
ATAAAAATAACACTCATCATAATTACAAAATTATAGTGAACTA
Found at i:21947861 original size:21 final size:20
Alignment explanation
Indices: 21947814--21947861 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
21947804 GCATTAGGAT
*
21947814 TAATT-AATTATGATTAAAG
1 TAATTAAATTATGATTAAAC
21947833 TAAGTTAAATTATGATTTAAAC
1 TAA-TTAAATTATGA-TTAAAC
21947855 TAATTAA
1 TAATTAA
21947862 TTAGGTTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 3 0.12
20 2 0.08
21 12 0.48
22 8 0.32
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (20 bp):
TAATTAAATTATGATTAAAC
Found at i:21949475 original size:6 final size:6
Alignment explanation
Indices: 21949456--21949489 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
21949446 GGATTTTAAG
*
21949456 TTTCCA TTTTCA TTTCCA TTTCCA TTTCCA TTTC
1 TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTTC
21949490 TATATTTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.29, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTCCA
Found at i:21956147 original size:12 final size:12
Alignment explanation
Indices: 21956130--21956160 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
21956120 CTCCAGTTTT
21956130 CACACGGCCTAG
1 CACACGGCCTAG
*
21956142 CACACGGCCTGG
1 CACACGGCCTAG
21956154 CACACGG
1 CACACGG
21956161 GTGTGTAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.42, G:0.29, T:0.06
Consensus pattern (12 bp):
CACACGGCCTAG
Found at i:21960406 original size:20 final size:21
Alignment explanation
Indices: 21960368--21960407 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
21960358 ACATTCCATT
*
21960368 TGGTTCTAAGTTCAAATTCTG
1 TGGTCCTAAGTTCAAATTCTG
21960389 TGGTCCTAAGTT-AAATTCT
1 TGGTCCTAAGTTCAAATTCT
21960408 AATAAATATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.42
Consensus pattern (21 bp):
TGGTCCTAAGTTCAAATTCTG
Found at i:21978885 original size:55 final size:53
Alignment explanation
Indices: 21978777--21979023 Score: 220
Period size: 55 Copynumber: 4.7 Consensus size: 53
21978767 ATTAGGGTTT
* * * * *
21978777 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAACTGGTAAGTTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGATAAG--TTCATAAGGC
* * *
21978832 AAGGAAATCATGTAAGACCATGTCAAAACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGGC
* * * * *
21978887 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
* * *
21978940 AAGGATACCATGCAAGACCATGTCAAGACATGGCAATGGTAAGCTT--TAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAG-TTCATAAGGC
* *
21978989 AAGGATACCATGCAAGACCATGTCAAGTCATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
21979024 ATGGTAAGGT
Statistics
Matches: 163, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
49 34 0.21
52 9 0.06
53 40 0.25
54 10 0.06
55 66 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:21979244 original size:16 final size:16
Alignment explanation
Indices: 21979223--21979253 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21979213 ATAAATTTGA
21979223 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
21979239 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
21979254 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:21987555 original size:21 final size:21
Alignment explanation
Indices: 21987529--21987570 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
21987519 TTGAAAAGCA
21987529 AAAGAAAATGATGATAATGAT
1 AAAGAAAATGATGATAATGAT
*
21987550 AAAGAAAATGATGATGATGAT
1 AAAGAAAATGATGATAATGAT
21987571 GATGATAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (21 bp):
AAAGAAAATGATGATAATGAT
Found at i:21988304 original size:43 final size:43
Alignment explanation
Indices: 21988256--21988343 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
21988246 TCATACTTTC
*
21988256 ATATAGATTATATTTATGTTTTATATTTTTATATATTTGAAAT
1 ATATAGATTATATTTATGTTTTATATTTTTATATAGTTGAAAT
21988299 ATATAGATTATATTTATGTTTTATATTTTTATATAGTTGAAAT
1 ATATAGATTATATTTATGTTTTATATTTTTATATAGTTGAAAT
21988342 AT
1 AT
21988344 TTTAGAAGAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (43 bp):
ATATAGATTATATTTATGTTTTATATTTTTATATAGTTGAAAT
Found at i:22008925 original size:39 final size:38
Alignment explanation
Indices: 22008874--22008949 Score: 91
Period size: 39 Copynumber: 2.0 Consensus size: 38
22008864 TACCAGGTAC
*
22008874 CAACTTTACTTCG-GCTAGGCCGATGAGACACTGGGTGT
1 CAACTTTACTTCGAACTA-GCCGATGAGACACTGGGTGT
* * *
22008912 CAACTATTGCTTCGAACTATCCGATGAGGCACTGGGTG
1 CAACT-TTACTTCGAACTAGCCGATGAGACACTGGGTG
22008950 CCAATCTGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 5 0.16
39 24 0.75
40 3 0.09
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (38 bp):
CAACTTTACTTCGAACTAGCCGATGAGACACTGGGTGT
Found at i:22012382 original size:286 final size:287
Alignment explanation
Indices: 22011813--22012382 Score: 863
Period size: 286 Copynumber: 2.0 Consensus size: 287
22011803 TTTCTATCAA
*
22011813 CCATTTTATTAATAATATCCAAATTTGCATAAAATAATATGAGTAATATATTTTAACAAGCTATT
1 CCATTTTATTAATAATATCCAAAATTGCATAAAATAATATGAGTAATATATTTTAACAAGCTATT
*
22011878 TACAATAAATTCGATGTTGCAAAATGTTCAATTTAGCTGTGAGAAATGTGTCATTCAAACACGGA
66 TACAATAAATTCAATGTTGCAAAATGTTCAATTTAGCTGTGAGAAATGTGTCATTCAAACACGGA
** * *
22011943 ACCAAAAAATACATATCTAAACACATTTCTTTGGAAACACAAATACTATATAAAAATGACGATGC
131 ACCAAAAAATACATATCTAAACACATTGATTTGAAAACACAAATACTACATAAAAATGACGATGC
*
22012008 AACACGTTTTAACAGTGTTTTTGTTTTCCTAATTTTAATATAAAACTTGCGTCAAGTTCGATGTG
196 AACACATTTTAACAGTGTTTTTGTTTTCCTAATTTTAATATAAAACTTGCGTCAAGTTCGATGTG
*** * *
22012073 AAAAACTTTGATTTTGGATACTTGGGT
261 AAAAACTCCAATTTCGAATACTTGGGT
* * * *
22012100 CCATTTTATTTATAATATCCAAAATTGTATAAAATAATATGAGTAATATATTTTGACAAGTTATT
1 CCATTTTATTAATAATATCCAAAATTGCATAAAATAATATGAGTAATATATTTTAACAAGCTATT
* * * *
22012165 TATAATAAATTCAATGTTGCAAAATTTTCAATTTAGCTTTGAGAAATGTGTCATTCAAACATGGA
66 TACAATAAATTCAATGTTGCAAAATGTTCAATTTAGCTGTGAGAAATGTGTCATTCAAACACGGA
* * *
22012230 A-TAAAAAATATATATCTAAACACATTGATTTGAAAACACAAATACTACATAAATATGACGATGC
131 ACCAAAAAATACATATCTAAACACATTGATTTGAAAACACAAATACTACATAAAAATGACGATGC
* * * * * * *
22012294 AATACATTTTAACTGTGTTTTTGTTTTCCTCATTTTAATGTAAAGCTTGCGTCAAGTTCGCTGTT
196 AACACATTTTAACAGTGTTTTTGTTTTCCTAATTTTAATATAAAACTTGCGTCAAGTTCGATGTG
22012359 AAAAACTCCAATTTCGAATACTTG
261 AAAAACTCCAATTTCGAATACTTG
22012383 CAGGTGAATT
Statistics
Matches: 253, Mismatches: 30, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
286 132 0.52
287 121 0.48
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.36
Consensus pattern (287 bp):
CCATTTTATTAATAATATCCAAAATTGCATAAAATAATATGAGTAATATATTTTAACAAGCTATT
TACAATAAATTCAATGTTGCAAAATGTTCAATTTAGCTGTGAGAAATGTGTCATTCAAACACGGA
ACCAAAAAATACATATCTAAACACATTGATTTGAAAACACAAATACTACATAAAAATGACGATGC
AACACATTTTAACAGTGTTTTTGTTTTCCTAATTTTAATATAAAACTTGCGTCAAGTTCGATGTG
AAAAACTCCAATTTCGAATACTTGGGT
Found at i:22014766 original size:16 final size:16
Alignment explanation
Indices: 22014745--22014783 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
22014735 TGAATTATTG
22014745 ATTACAG-CTCTATTCA
1 ATTACAGCCT-TATTCA
*
22014761 ATTACAGCCTTATTCC
1 ATTACAGCCTTATTCA
22014777 ATTACAG
1 ATTACAG
22014784 TGAACCAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 19 0.90
17 2 0.10
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.36
Consensus pattern (16 bp):
ATTACAGCCTTATTCA
Found at i:22015826 original size:84 final size:84
Alignment explanation
Indices: 22015685--22015854 Score: 340
Period size: 84 Copynumber: 2.0 Consensus size: 84
22015675 AAACAATTAT
22015685 TTTAGATAATTTGTCAATACCAAACAGTTTCATGTTGTGCCATGATATGTATGAATCTATAAAAT
1 TTTAGATAATTTGTCAATACCAAACAGTTTCATGTTGTGCCATGATATGTATGAATCTATAAAAT
22015750 TTCATTTTTCCAATGTCCC
66 TTCATTTTTCCAATGTCCC
22015769 TTTAGATAATTTGTCAATACCAAACAGTTTCATGTTGTGCCATGATATGTATGAATCTATAAAAT
1 TTTAGATAATTTGTCAATACCAAACAGTTTCATGTTGTGCCATGATATGTATGAATCTATAAAAT
22015834 TTCATTTTTCCAATGTCCC
66 TTCATTTTTCCAATGTCCC
22015853 TT
1 TT
22015855 AAGTTTTACA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 86 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (84 bp):
TTTAGATAATTTGTCAATACCAAACAGTTTCATGTTGTGCCATGATATGTATGAATCTATAAAAT
TTCATTTTTCCAATGTCCC
Found at i:22019788 original size:27 final size:27
Alignment explanation
Indices: 22019765--22019875 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
22019755 AGTATAGTTT
22019765 GTCGAGATAGTAAACATGGGATAGTCC
1 GTCGAGATAGTAAACATGGGATAGTCC
* *
22019792 GTTGGGATAGTAAACATGGGATAGTCC
1 GTCGAGATAGTAAACATGGGATAGTCC
* * *
22019819 GTTG-GAATAGTAAACATTGGATAATCC
1 GTCGAG-ATAGTAAACATGGGATAGTCC
* * * *
22019846 GTCGGGACAATAAACATGGGGTAGTCC
1 GTCGAGATAGTAAACATGGGATAGTCC
22019873 GTC
1 GTC
22019876 AGGACAGTGA
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 70 0.97
28 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (27 bp):
GTCGAGATAGTAAACATGGGATAGTCC
Found at i:22019789 original size:14 final size:14
Alignment explanation
Indices: 22019770--22019816 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
22019760 AGTTTGTCGA
22019770 GATAGTAAACATGG
1 GATAGTAAACATGG
* *
22019784 GATAGT--CCGTTGG
1 GATAGTAAAC-ATGG
22019797 GATAGTAAACATGG
1 GATAGTAAACATGG
22019811 GATAGT
1 GATAGT
22019817 CCGTTGGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
12 1 0.04
13 9 0.35
14 15 0.58
15 1 0.04
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.26
Consensus pattern (14 bp):
GATAGTAAACATGG
Found at i:22019841 original size:54 final size:54
Alignment explanation
Indices: 22019771--22019874 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
22019761 GTTTGTCGAG
* * * *
22019771 ATAGTAAACATGGGATAGTCCGTTGGGATAGTAAACATGGGATAGTCCGTTGGA
1 ATAGTAAACATGGGATAATCCGTCGGGACAATAAACATGGGATAGTCCGTTGGA
* *
22019825 ATAGTAAACATTGGATAATCCGTCGGGACAATAAACATGGGGTAGTCCGT
1 ATAGTAAACATGGGATAATCCGTCGGGACAATAAACATGGGATAGTCCGT
22019875 CAGGACAGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (54 bp):
ATAGTAAACATGGGATAATCCGTCGGGACAATAAACATGGGATAGTCCGTTGGA
Found at i:22019880 original size:27 final size:27
Alignment explanation
Indices: 22019775--22019915 Score: 115
Period size: 27 Copynumber: 5.2 Consensus size: 27
22019765 GTCGAGATAG
* * *
22019775 TAAACATGGGATAGTCCGTTGGGATAG
1 TAAACATGGGATAGTCCGTCGGGACAA
* * * *
22019802 TAAACATGGGATAGTCCGTTGGAATAG
1 TAAACATGGGATAGTCCGTCGGGACAA
* *
22019829 TAAACATTGGATAATCCGTCGGGACAA
1 TAAACATGGGATAGTCCGTCGGGACAA
* * *
22019856 TAAACATGGGGTAGTCCGTCAGGACAG
1 TAAACATGGGATAGTCCGTCGGGACAA
** *
22019883 TGAACACA-GGG-TAGTTTGCCGGGACAA
1 T-AA-ACATGGGATAGTCCGTCGGGACAA
22019910 TAAACA
1 TAAACA
22019916 CGAGGTAGTC
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
25 3 0.03
26 2 0.02
27 82 0.86
28 5 0.05
29 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (27 bp):
TAAACATGGGATAGTCCGTCGGGACAA
Found at i:22019916 original size:27 final size:26
Alignment explanation
Indices: 22019843--22019925 Score: 67
Period size: 27 Copynumber: 3.1 Consensus size: 26
22019833 CATTGGATAA
* *
22019843 TCCGTCGGGACAATAAACATGGGGTAG
1 TCCGCCGGGACAATAAACA-CGGGTAG
* * * *
22019870 TCCGTCAGGACAGTGAACACAGGGTAG
1 TCCGCCGGGACAATAAACAC-GGGTAG
**
22019897 TTTGCCGGGACAATAAACACGAGGTAG
1 TCCGCCGGGACAATAAACACG-GGTAG
22019924 TC
1 TC
22019926 AATCGTGACA
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
26 1 0.02
27 42 0.98
ACGTcount: A:0.30, C:0.20, G:0.31, T:0.18
Consensus pattern (26 bp):
TCCGCCGGGACAATAAACACGGGTAG
Found at i:22021876 original size:144 final size:146
Alignment explanation
Indices: 22021716--22021987 Score: 406
Period size: 145 Copynumber: 1.9 Consensus size: 146
22021706 CTGATTCTGA
* * *
22021716 ATACTTGTAGCTGAAATTTTTATCAA-CCTTTTTTATTCAAAATCAAATACTAAATGAATAAATA
1 ATACTTGTAGCTGAAATTTTTAACAATACTTTTTTATTAAAAATCAAATACTAAATGAATAAATA
* * *
22021780 TGATTAAAGAATATATTTTACCA-TTTTTTCCAACAATTTTATTGTAGCAAATAGTAAGTTTCAG
66 TGATTAAAGAATATATTTTACCACTTTTATCCAACAAATTTATTGTAGCAAATAATAAGTTTCAG
22021844 TGTTTGAAATTCTAGG
131 TGTTTGAAATTCTAGG
*
22021860 ATACTTGTCA-CTGAAATTTTTAACAATACTTTTTTATTAAAAATCAAATATTAAATGAATAAAT
1 ATACTTGT-AGCTGAAATTTTTAACAATACTTTTTTATTAAAAATCAAATACTAAATGAATAAAT
* * * * *
22021924 ATGATTATAGGATATATTTTGCCACTTTTATCCAACAAATTTGTTGTAGCAAGTAATAAGTTTC
65 ATGATTAAAGAATATATTTTACCACTTTTATCCAACAAATTTATTGTAGCAAATAATAAGTTTC
22021988 GGCGTGAAAT
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
144 23 0.20
145 56 0.50
146 34 0.30
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (146 bp):
ATACTTGTAGCTGAAATTTTTAACAATACTTTTTTATTAAAAATCAAATACTAAATGAATAAATA
TGATTAAAGAATATATTTTACCACTTTTATCCAACAAATTTATTGTAGCAAATAATAAGTTTCAG
TGTTTGAAATTCTAGG
Found at i:22045865 original size:20 final size:20
Alignment explanation
Indices: 22045840--22045881 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
22045830 TAGACAATAA
22045840 AAGAAGAGGAGAAGAAGAAG
1 AAGAAGAGGAGAAGAAGAAG
* *
22045860 AAGAAGAGGAGGAGGAGAAG
1 AAGAAGAGGAGAAGAAGAAG
22045880 AA
1 AA
22045882 ATGGAGATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (20 bp):
AAGAAGAGGAGAAGAAGAAG
Found at i:22062382 original size:47 final size:47
Alignment explanation
Indices: 22062328--22062680 Score: 490
Period size: 47 Copynumber: 7.6 Consensus size: 47
22062318 TATTTGAATA
*
22062328 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
22062375 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
22062424 AATGTGAACATG--TATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
22062469 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
22062516 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
22062563 AATGTGAACATG--TGTATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
22062608 AATGTGAA-AGTGTATATA-GTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
22062654 GATGTGGAA-GTGTATAAATGTGATAAG
1 AATGT-GAACATGTATATATGTGATAAG
22062681 TCCCGAAGGG
Statistics
Matches: 280, Mismatches: 16, Indels: 20
0.89 0.05 0.06
Matches are distributed among these distances:
44 1 0.00
45 84 0.30
46 38 0.14
47 112 0.40
49 44 0.16
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:22065355 original size:40 final size:40
Alignment explanation
Indices: 22065230--22065418 Score: 339
Period size: 40 Copynumber: 4.8 Consensus size: 40
22065220 AGGTCTCGAC
22065230 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
22065269 GATGTATCCGGGCTAAGT-CCGAAGAGCATTC-TGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
22065307 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
22065347 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
22065387 GATGTATCCGGGCTAAGTCCCGAAGAGCATTC
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTC
22065419 CTAAGTCCCG
Statistics
Matches: 144, Mismatches: 3, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
38 25 0.17
39 30 0.21
40 89 0.62
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:22065363 original size:78 final size:80
Alignment explanation
Indices: 22065230--22065418 Score: 357
Period size: 78 Copynumber: 2.4 Consensus size: 80
22065220 AGGTCTCGAC
22065230 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAG-TCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
22065293 AGCATTC-TGCTAGT
66 AGCATTCGTGCTAGT
22065307 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
22065372 AGCATTCGTGCTAGT
66 AGCATTCGTGCTAGT
22065387 GATGTATCCGGGCTAAGTCCCGAAGAGCATTC
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTC
22065419 CTAAGTCCCG
Statistics
Matches: 109, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
77 4 0.04
78 52 0.48
79 14 0.13
80 39 0.36
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
AGCATTCGTGCTAGT
Found at i:22065424 original size:20 final size:20
Alignment explanation
Indices: 22065399--22065438 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
22065389 TGTATCCGGG
22065399 CTAAGTCCCGAAGAGCATTC
1 CTAAGTCCCGAAGAGCATTC
22065419 CTAAGTCCCGAAGAGCATTC
1 CTAAGTCCCGAAGAGCATTC
22065439 ATGCTAGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (20 bp):
CTAAGTCCCGAAGAGCATTC
Found at i:22065452 original size:60 final size:60
Alignment explanation
Indices: 22065359--22065478 Score: 213
Period size: 60 Copynumber: 2.0 Consensus size: 60
22065349 TGTATCCGGG
* *
22065359 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
1 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
*
22065419 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTC
1 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
22065479 GTGCTAGTGA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (60 bp):
CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
Found at i:22065474 original size:40 final size:40
Alignment explanation
Indices: 22065419--22065519 Score: 184
Period size: 40 Copynumber: 2.5 Consensus size: 40
22065409 AAGAGCATTC
22065419 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
1 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
* *
22065459 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGG
1 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
22065499 CTAAGTCCCGAAGAGCATTCA
1 CTAAGTCCCGAAGAGCATTCA
22065520 AGTCCCGAAG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
Found at i:22065492 original size:100 final size:100
Alignment explanation
Indices: 22065319--22065615 Score: 537
Period size: 100 Copynumber: 3.0 Consensus size: 100
22065309 TGTATCCGGG
22065319 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
22065384 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
66 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
22065419 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
22065484 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT-
66 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
22065518 C-AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTT-CGAAGAGCATTCGTGCT
1 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
* * **
22065581 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTC
66 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
22065616 GTGCTGGTGT
Statistics
Matches: 192, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
97 47 0.24
98 45 0.23
99 1 0.01
100 99 0.52
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (100 bp):
CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
Found at i:22065524 original size:18 final size:18
Alignment explanation
Indices: 22065501--22065537 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
22065491 TATCCGGGCT
22065501 AAGTCCCGAAGAGCATTC
1 AAGTCCCGAAGAGCATTC
22065519 AAGTCCCGAAGAGCATTC
1 AAGTCCCGAAGAGCATTC
22065537 A
1 A
22065538 TGCTAGTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.27, G:0.22, T:0.16
Consensus pattern (18 bp):
AAGTCCCGAAGAGCATTC
Found at i:22065536 original size:58 final size:57
Alignment explanation
Indices: 22065461--22065575 Score: 194
Period size: 58 Copynumber: 2.0 Consensus size: 57
22065451 TATCCGGGCT
* *
22065461 AAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
1 AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTC
*
22065519 AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCGAAGAGCATTC
1 AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
22065576 GTGCTAGTGA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
57 12 0.22
58 42 0.78
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (57 bp):
AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
Found at i:22065661 original size:40 final size:40
Alignment explanation
Indices: 22065519--22065665 Score: 179
Period size: 40 Copynumber: 3.7 Consensus size: 40
22065509 AAGAGCATTC
*
22065519 AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCT
1 AAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCT
* * *
22065559 AAGT-TCGAAGAGCATTCGTGCTAGTGATATATCCGTGCT
1 AAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCT
** * * *
22065598 AAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCT
1 AAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCT
* * *
22065638 AGGTCCCGAAGAGCAATCATGCTGGTGA
1 AAGTCCCGAAGAGCATTCATGCTAGTGA
22065666 CGTGTATTCG
Statistics
Matches: 90, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 33 0.37
40 57 0.63
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCT
Found at i:22067017 original size:84 final size:85
Alignment explanation
Indices: 22066916--22067092 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
22066906 GGCCGGCCAT
22066916 GAGCAT-GGTGGACAAGATGTTATGGCT-AAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
22066979 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
22066999 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
22067064 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
22067084 GGGCATGGG
1 GAGCATGGG
22067093 CAATAAAATA
Statistics
Matches: 91, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
83 6 0.07
84 21 0.23
85 64 0.70
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:22068406 original size:47 final size:47
Alignment explanation
Indices: 22068352--22068709 Score: 524
Period size: 47 Copynumber: 7.6 Consensus size: 47
22068342 TATTTGAATA
*
22068352 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
22068399 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
22068448 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
22068495 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
22068542 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
22068589 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
22068636 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
22068683 GATGTGGAA-GTGTATAAATGTGATAAG
1 AATGT-GAACATGTATATATGTGATAAG
22068710 TCCCGAAGGG
Statistics
Matches: 287, Mismatches: 20, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 239 0.83
48 3 0.01
49 44 0.15
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:22068608 original size:141 final size:142
Alignment explanation
Indices: 22068352--22068709 Score: 589
Period size: 141 Copynumber: 2.5 Consensus size: 142
22068342 TATTTGAATA
* * *
22068352 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATAT
22068416 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAA
64 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAA
22068481 TGGCCAATGTGATG
129 TGGCCAATGTGATG
*
22068495 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG-TGTA
1 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGATATA
*
22068558 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAAT
65 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAAT
22068623 GGCCAATGTGATG
130 GGCCAATGTGATG
* * *
22068636 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTG-TATAA
1 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATAT
22068700 ATGTGATAAG
66 ATGTGATAAG
22068710 TCCCGAAGGG
Statistics
Matches: 202, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
140 1 0.00
141 147 0.73
143 52 0.26
144 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (142 bp):
AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATAT
ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATG
GCCAATGTGATG
Found at i:22076880 original size:28 final size:28
Alignment explanation
Indices: 22076840--22076898 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
22076830 GTATATATTT
22076840 AAAATTCTTAAGTATAAACACACAATTC
1 AAAATTCTTAAGTATAAACACACAATTC
22076868 AAAATTCTTAAGTATAAACACACAATTC
1 AAAATTCTTAAGTATAAACACACAATTC
22076896 AAA
1 AAA
22076899 CATAAGAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.53, C:0.17, G:0.03, T:0.27
Consensus pattern (28 bp):
AAAATTCTTAAGTATAAACACACAATTC
Found at i:22082376 original size:43 final size:43
Alignment explanation
Indices: 22082310--22082861 Score: 311
Period size: 43 Copynumber: 12.7 Consensus size: 43
22082300 CATCTTCGAT
* *
22082310 CTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * * ** * *
22082353 CTGTTACCCTACTGCTTATGGGGTTAAGGCCTTTCGT-CTTTGA-T
1 CTGTTACCCTACTGCTTAGGGGGTTAA-G-ATCT-GTAAATTCAGC
* * * ** *
22082397 TTGCT-CCACTACTGCTTAGGGAGACAAGATCTGTAAATTCAAC
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* *
22082440 CTGTTACCCTACTAG-TTAGGGGGTTAAGATTTGTAAATCTTCAAC
1 CTGTTACCCTACT-GCTTAGGGGGTTAAGATCTGTAAA--TTCAGC
* * *
22082485 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAATTCGGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAATTCAGC
* * * * ** * **
22082528 TTGTTACCCTATTGCTTAGGGGGTTAA-AGCCTATCATCTTTAAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTGT-AAATTCAGC
* *
22082572 CTGTTTCCTTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAA--TTCAGC
* * ** *
22082617 CTGTTACCCTACTGCTTAGGGGGTTAA-AGCCTATCATCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTGT-AAATTCAG-C
* * ** *
22082661 CTGTTTCCCTATTGCTTAGGGGGTTAAGATCT-TCATCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG-C
* *
22082704 CTGTTTCCCTACTGCTTAAGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * * ** *
22082747 CTGTTACCTTACTGCTTAGGGGTTTAAGGCTCT-TAACCCTC-GAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GATCTGTAA-ATTCAG-C
* * ** * * *
22082791 CTGTT-CCACCACTGCTTAGGGAGACAAGATCTATAAATTTAAC
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
*
22082834 CTGTTACCCTACTGCTTAGGGGTTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
22082862 GCCGTTCGTC
Statistics
Matches: 384, Mismatches: 94, Indels: 62
0.71 0.17 0.11
Matches are distributed among these distances:
41 2 0.01
42 5 0.01
43 184 0.48
44 115 0.30
45 75 0.20
46 3 0.01
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
Found at i:22082409 original size:87 final size:87
Alignment explanation
Indices: 22082270--22082692 Score: 451
Period size: 87 Copynumber: 4.8 Consensus size: 87
22082260 TCCAGCCTAC
* * * * *
22082270 TACCCTACTACTTAGAGGGTTAAGGTCC-ATCATCTTCGATCTGTTTCCCTACTACTTAGGGGGT
1 TACCCTACTGCTTAGGGGGTTAAAG-CCTATCATCTTCAATCTGTTTCCCTACTGCTTAGGGGGT
22082334 TAAGATCTGTAAATTCAGCCTGT
65 TAAGATCTGTAAATTCAGCCTGT
* * * * ** * * * *
22082357 TACCCTACTGCTTATGGGGTTAAGGCCTTTCGTCTTTGATTTG-CTCCACTACTGCTTAGGGAGA
1 TACCCTACTGCTTAGGGGGTTAAAGCCTATCATCTTCAATCTGTTTCC-CTACTGCTTAGGGGGT
* *
22082421 CAAGATCTGTAAATTCAACCTGT
65 TAAGATCTGTAAATTCAGCCTGT
** * * * *
22082444 TACCCTACTAG-TTAGGGGGTT-AAGATTTGTAAATCTTCAACCTGTTACCCTACTGCTTAGGGG
1 TACCCTACT-GCTTAGGGGGTTAAAG-CCTAT-CATCTTCAATCTGTTTCCCTACTGCTTAGGGG
* * * *
22082507 TTTAAG-GCTTGTAAATTCGGCTTGT
63 GTTAAGATC-TGTAAATTCAGCCTGT
* * *
22082532 TACCCTATTGCTTAGGGGGTTAAAGCCTATCATCTTTAATCTGTTTCCTTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGGTTAAAGCCTATCATCTTCAATCTGTTTCCCTACTGCTTAGGGGGTT
22082597 AAGATCTGTAAATCTTCAGCCTGT
66 AAGATCTGTAAA--TTCAGCCTGT
* *
22082621 TACCCTACTGCTTAGGGGGTTAAAGCCTATCATCTTCGATCTGTTTCCCTATTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGGTTAAAGCCTATCATCTTCAATCTGTTTCCCTACTGCTTAGGGGGTT
22082686 AAGATCT
66 AAGATCT
22082693 TCATCTTCGA
Statistics
Matches: 272, Mismatches: 52, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
86 7 0.03
87 127 0.47
88 58 0.21
89 80 0.29
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (87 bp):
TACCCTACTGCTTAGGGGGTTAAAGCCTATCATCTTCAATCTGTTTCCCTACTGCTTAGGGGGTT
AAGATCTGTAAATTCAGCCTGT
Found at i:22082576 original size:132 final size:132
Alignment explanation
Indices: 22082270--22082777 Score: 509
Period size: 132 Copynumber: 3.9 Consensus size: 132
22082260 TCCAGCCTAC
* * * * * * *
22082270 TACCCTACTACTTAGAGGGTTAAGGTCCATCATCTTCGATCTGTTTCCCTACTACTTAGGGGGTT
1 TACCCTATTGCTTAGGGGGTTAA-GACCTTCATCTTCAATCTGTTTCCCTACTGCTTAGGGGGTT
*** *
22082335 AAGATCTGTAAA--TTCAGCCTGTTACCCTACTGCTTATGGGG-TTAAGGCCTT-TCGTCTTTGA
65 AAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-GGGGTTTAAGG-CTTATCAAATTCGA
* *
22082396 TTTGC
128 TCTGT
* * ** * ** * *
22082401 T-CCACTACTGCTTAGGGAGACAAGATCTGT-AAATTCAACCTGTTACCCTACTAG-TTAGGGGG
1 TACC-CTATTGCTTAGGGGGTTAAGACCT-TCATCTTCAATCTGTTTCCCTACT-GCTTAGGGGG
* * *
22082463 TTAAGATTTGTAAATCTTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTCG-
63 TTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCAAATTCGA
*
22082526 GCTTGT
128 TC-TGT
* *
22082532 TACCCTATTGCTTAGGGGGTTAA-AGCCTATCATCTTTAATCTGTTTCCTTACTGCTTAGGGGGT
1 TACCCTATTGCTTAGGGGGTTAAGA-CCT-TCATCTTCAATCTGTTTCCCTACTGCTTAGGGGGT
* * * **
22082596 TAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCCTATCATCTTCGAT
64 TAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCAAATTCGAT
22082661 CTGT
129 CTGT
* * * *
22082665 TTCCCTATTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAAGGGGTTA
1 TACCCTATTGCTTAGGGGGTTAAGACCTTCATCTTCAATCTGTTTCCCTACTGCTTAGGGGGTTA
*
22082730 AGATCTGTAAA--TTCAGCCTGTTACCTTACTGCTTAGGGGTTTAAGGCT
66 AGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCT
22082778 CTTAACCCTC
Statistics
Matches: 308, Mismatches: 54, Indels: 31
0.78 0.14 0.08
Matches are distributed among these distances:
130 76 0.25
131 48 0.16
132 150 0.49
133 32 0.10
134 2 0.01
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (132 bp):
TACCCTATTGCTTAGGGGGTTAAGACCTTCATCTTCAATCTGTTTCCCTACTGCTTAGGGGGTTA
AGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCAAATTCGATCT
GT
Found at i:22082587 original size:175 final size:176
Alignment explanation
Indices: 22082301--22082643 Score: 433
Period size: 175 Copynumber: 1.9 Consensus size: 176
22082291 AAGGTCCATC
* * *
22082301 ATCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACT
1 ATCTTCAACCTGTTACCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACT
* * * * * *
22082366 GCTTATGGGGTTAAGGCCTTTCGTCTTTGATTTGCTCCACTACTGCTTAGGGAGACAAGATCTGT
66 GCTTAGGGGGTTAAAGCCTATCATCTTTAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGT
22082431 AAA-TTCAACCTGTTACCCTACTAG-TTAGGGGGTTAAGATTTGTAA
131 AAACTTCAACCTGTTACCCTACT-GCTTAGGGGGTTAAGATTTGTAA
* * * * * *
22082476 ATCTTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAATTCGGCTTGTTACCCTAT
1 ATCTTCAACCTGTTACCCTACTACTTAGGGGGTTAAGATC-TGTAAATTCAGCCTGTTACCCTAC
* * * **
22082540 TGCTTAGGGGGTTAAAGCCTATCATCTTTAATCTGTTTCC-TTACTGCTTAGGGGGTTAAGATCT
65 TGCTTAGGGGGTTAAAGCCTATCATCTTTAATCTG-CTCCACTACTGCTTAGGGAGACAAGATCT
*
22082604 GTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAA
129 GTAAA-CTTCAACCTGTTACCCTACTGCTTAGGGGGTTAA
22082644 AGCCTATCAT
Statistics
Matches: 142, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
174 1 0.01
175 107 0.75
176 4 0.03
177 30 0.21
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (176 bp):
ATCTTCAACCTGTTACCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACT
GCTTAGGGGGTTAAAGCCTATCATCTTTAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGT
AAACTTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGATTTGTAA
Found at i:22082790 original size:87 final size:87
Alignment explanation
Indices: 22082661--22082941 Score: 354
Period size: 87 Copynumber: 3.2 Consensus size: 87
22082651 CATCTTCGAT
* * * *
22082661 CTGTTTCCCTATTGCTTAGGGGGTTAA-GATCTTCATCTTCGATCTGTTTCC-CTACTGCTTAAG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTCTTCATCTTCGATCTG-TTCCACTACTGCTT-AG
** *
22082724 GG-GTTAAGATCTGTAAATTCAGC
64 GGAGACAAGATCTGTAAATTTAGC
* * * * *
22082747 CTGTTACCTTACTGCTTAGGGGTTTAAGGCTCTTAACCCTCGATCTGTTCCACCACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTCTTCATCTTCGATCTGTTCCACTACTGCTTAGGG
* *
22082812 AGACAAGATCTATAAATTTAAC
66 AGACAAGATCTGTAAATTTAGC
* * *
22082834 CTGTTACCCTACTGCTTAGGGGTTTAAGGC-CGTTCGTCTTCGATTTGCTCCACTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTC-TTCATCTTCGATCTGTTCCACTACTGCTTAGG
22082898 GAGACAAGATCTGTAAATTTAGC
65 GAGACAAGATCTGTAAATTTAGC
22082921 CTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
22082942 AGATAAGGCT
Statistics
Matches: 167, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
86 32 0.19
87 135 0.81
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (87 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGCTCTTCATCTTCGATCTGTTCCACTACTGCTTAGGG
AGACAAGATCTGTAAATTTAGC
Found at i:22082941 original size:43 final size:43
Alignment explanation
Indices: 22082310--22082941 Score: 309
Period size: 43 Copynumber: 14.5 Consensus size: 43
22082300 CATCTTCGAT
* * *
22082310 CTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
* ** *** * *
22082353 CTGTTACCCTACTGCTTATGGGGTTAAGGCCT-TTCGTCTTTGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAAT-TTAG-C
* * * ** * *
22082397 TTGCT-CCACTACTGCTTAGGGAGACAAGATCTGTAAATTCAAC
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
* *
22082440 CTGTTACCCTACTAG-TTAGGGGGTTAAGATTTGTAAATCTTCAAC
1 CTGTTACCCTACT-GCTTAGGGGGTTAAGATCTGTAAAT-TT-AGC
* * **
22082485 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAATTCGGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAATTTAGC
* * * * ** **
22082528 TTGTTACCCTATTGCTTAGGGGGTTAA-AGCCTATCATCTTTAAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTGT-AAATTTAGC
* *
22082572 CTGTTTCCTTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAAT-TT-AGC
* * * * *
22082617 CTGTTACCCTACTGCTTAGGGGGTTAA-AGC-CTATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTA-AAT-TTAG-C
* * * * *
22082661 CTGTTTCCCTATTGCTTAGGGGGTTAAGATCT-T-CATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAAT-TTAG-C
* * *
22082704 CTGTTTCCCTACTGCTTAAGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
* * * *** * *
22082747 CTGTTACCTTACTGCTTAGGGGTTTAAGGCTCT-TAACCCTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GATCTGTAAATTTAG-C
* * ** * *
22082791 CTGTT-CCACCACTGCTTAGGGAGACAAGATCTATAAATTTAAC
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
* * * *** * *
22082834 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCCGTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAAT-TTAG-C
* * * **
22082878 TTGCT-CCACTACTGCTTAGGGAGACAAGATCTGTAAATTTAGC
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
22082921 CTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
22082942 AGATAAGGCT
Statistics
Matches: 428, Mismatches: 129, Indels: 64
0.69 0.21 0.10
Matches are distributed among these distances:
42 5 0.01
43 203 0.47
44 147 0.34
45 73 0.17
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
Found at i:22083104 original size:64 final size:64
Alignment explanation
Indices: 22083024--22083147 Score: 194
Period size: 64 Copynumber: 1.9 Consensus size: 64
22083014 GTATCTATGT
** * *
22083024 TTATGCCAAATAATTAGGATGCTATGATTGAAATGGATCTAATGCTCCTAACTAAATGTGATGC
1 TTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAAATGTGATGC
* *
22083088 TTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 TTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAAATGTG
22083148 TAGAAATGTC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (64 bp):
TTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAAATGTGATGC
Found at i:22087505 original size:9 final size:10
Alignment explanation
Indices: 22087492--22087537 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
22087482 GGGAAAGTCT
22087492 AATGCAAAT-
1 AATGCAAATG
22087501 AATGC-AATG
1 AATGCAAATG
22087510 CAATGCAAATG
1 -AATGCAAATG
*
22087521 CATG-AAATG
1 AATGCAAATG
22087530 AATGCAAA
1 AATGCAAA
22087538 AGAAAGGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
8 3 0.10
9 13 0.42
10 11 0.35
11 4 0.13
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (10 bp):
AATGCAAATG
Found at i:22087516 original size:19 final size:19
Alignment explanation
Indices: 22087492--22087537 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
22087482 GGGAAAGTCT
*
22087492 AATGCAAAT-AATGCAATG
1 AATGCAAATGAATGAAATG
*
22087510 CAATGCAAATGCATGAAATG
1 -AATGCAAATGAATGAAATG
22087530 AATGCAAA
1 AATGCAAA
22087538 AGAAAGGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (19 bp):
AATGCAAATGAATGAAATG
Found at i:22090038 original size:29 final size:30
Alignment explanation
Indices: 22089973--22090038 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 30
22089963 ATTTTAAAGT
* *
22089973 AAATAATATATATATACATGTAAAAGTATG
1 AAATAATATATATATAAATGTAAAAGTATA
*
22090003 AAA-AATATATATATAAAT-TTAAAGTA-A
1 AAATAATATATATATAAATGTAAAAGTATA
22090030 ACAATAATA
1 A-AATAATA
22090039 AAAAATATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 1 0.03
28 9 0.29
29 18 0.58
30 3 0.10
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (30 bp):
AAATAATATATATATAAATGTAAAAGTATA
Found at i:22092500 original size:12 final size:12
Alignment explanation
Indices: 22092480--22092510 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
22092470 TCATTACCAC
*
22092480 CATTGTCATTGT
1 CATTATCATTGT
22092492 CATTATCATTGT
1 CATTATCATTGT
22092504 CATTATC
1 CATTATC
22092511 TTCCTCGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.19, G:0.10, T:0.48
Consensus pattern (12 bp):
CATTATCATTGT
Found at i:22093940 original size:103 final size:103
Alignment explanation
Indices: 22093761--22093968 Score: 416
Period size: 103 Copynumber: 2.0 Consensus size: 103
22093751 TATTATTCTC
22093761 TACTAAATAATGGAATACAATGGATGATTTACAATTAAGAGGGAGGCTCTCTATTTATAATTGAG
1 TACTAAATAATGGAATACAATGGATGATTTACAATTAAGAGGGAGGCTCTCTATTTATAATTGAG
22093826 CTCTCCTAAATCTAACGGTCTAGCTACATTTACATCGA
66 CTCTCCTAAATCTAACGGTCTAGCTACATTTACATCGA
22093864 TACTAAATAATGGAATACAATGGATGATTTACAATTAAGAGGGAGGCTCTCTATTTATAATTGAG
1 TACTAAATAATGGAATACAATGGATGATTTACAATTAAGAGGGAGGCTCTCTATTTATAATTGAG
22093929 CTCTCCTAAATCTAACGGTCTAGCTACATTTACATCGA
66 CTCTCCTAAATCTAACGGTCTAGCTACATTTACATCGA
22093967 TA
1 TA
22093969 GACGAGATGA
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 105 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (103 bp):
TACTAAATAATGGAATACAATGGATGATTTACAATTAAGAGGGAGGCTCTCTATTTATAATTGAG
CTCTCCTAAATCTAACGGTCTAGCTACATTTACATCGA
Found at i:22104844 original size:11 final size:12
Alignment explanation
Indices: 22104819--22104848 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
22104809 ATGAAGTTAG
22104819 TCAAACATATTT
1 TCAAACATATTT
22104831 TCAAACAT-TTT
1 TCAAACATATTT
22104842 TCAAACA
1 TCAAACA
22104849 GGTTAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (12 bp):
TCAAACATATTT
Found at i:22107382 original size:18 final size:18
Alignment explanation
Indices: 22107359--22107393 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22107349 TGATGATATC
22107359 GATATTAATGCTAGTGAT
1 GATATTAATGCTAGTGAT
*
22107377 GATATTGATGCTAGTGA
1 GATATTAATGCTAGTGA
22107394 CGCCATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (18 bp):
GATATTAATGCTAGTGAT
Found at i:22107646 original size:18 final size:18
Alignment explanation
Indices: 22107606--22107648 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
22107596 GTTCAAGATG
22107606 TAATTAATTTAAAATTTT
1 TAATTAATTTAAAATTTT
* *
22107624 CAATTAA-TTAAATTTATT
1 TAATTAATTTAAAATT-TT
22107642 TAATTAA
1 TAATTAA
22107649 AAACTTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATTAATTTAAAATTTT
Found at i:22110317 original size:20 final size:19
Alignment explanation
Indices: 22110294--22110331 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
22110284 TCACATTTTG
22110294 TAAACTATTTTTTTTACATA
1 TAAA-TATTTTTTTTACATA
*
22110314 TAAATGTTTTTTTTACAT
1 TAAATATTTTTTTTACAT
22110332 TGGTATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58
Consensus pattern (19 bp):
TAAATATTTTTTTTACATA
Found at i:22110583 original size:26 final size:24
Alignment explanation
Indices: 22110543--22110617 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 24
22110533 TTATTTTATT
* * *
22110543 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
22110567 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
*
22110593 AAAT-AA-ATA-TTAAAAAAATAA
1 AAATAAATATATTTAAAAACATAA
22110614 AAAT
1 AAAT
22110618 GATACTAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
21 15 0.33
22 3 0.07
23 2 0.04
25 8 0.18
26 17 0.38
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.27
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:22110608 original size:22 final size:21
Alignment explanation
Indices: 22110573--22110617 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
22110563 ATAATAAATC
* *
22110573 AAATATAT-TTAAAAACATAA
1 AAATAAATATTAAAAAAATAA
22110593 AAATAAATATTAAAAAAATAA
1 AAATAAATATTAAAAAAATAA
22110614 AAAT
1 AAAT
22110618 GATACTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AAATAAATATTAAAAAAATAA
Found at i:22110626 original size:20 final size:21
Alignment explanation
Indices: 22110582--22110627 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
22110572 CAAATATATT
* *
22110582 TAAAAACATAAAAATAAATAT
1 TAAAAAAATAAAAATAAATAC
*
22110603 TAAAAAAATAAAAAT-GATAC
1 TAAAAAAATAAAAATAAATAC
22110623 TAAAA
1 TAAAA
22110628 TAATTCTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.22
Consensus pattern (21 bp):
TAAAAAAATAAAAATAAATAC
Found at i:22113043 original size:63 final size:63
Alignment explanation
Indices: 22112944--22113069 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
22112934 ATTAAGGTTC
22112944 ATTTTCATTCCTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
1 ATTTTCATTCCTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
*
22113007 ATTTTCATTCTTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
1 ATTTTCATTCCTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
22113070 CAAATAGTTG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.45
Consensus pattern (63 bp):
ATTTTCATTCCTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
Found at i:22123308 original size:20 final size:18
Alignment explanation
Indices: 22123254--22123309 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
22123244 TTTTAGAATT
*
22123254 TTTTTTTAAGTTTTTATAAA
1 TTTTTTT-AGATTTT-TAAA
*
22123274 TTTTTTTAGAATTTTAAA
1 TTTTTTTAGATTTTTAAA
22123292 TATTTTTTATGATTTTTA
1 T-TTTTTTA-GATTTTTA
22123310 GTAAAAAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 5 0.16
19 12 0.39
20 14 0.45
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTTTTTAGATTTTTAAA
Found at i:22131187 original size:27 final size:27
Alignment explanation
Indices: 22131157--22131334 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22131147 ATATTGAGTC
* * * *
22131157 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
22131184 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22131211 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
22131239 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
22131266 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
22131293 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22131320 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22131335 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:22131296 original size:82 final size:81
Alignment explanation
Indices: 22131178--22131333 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22131168 TGCTATATAA
* *
22131178 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
22131243 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
22131260 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
22131324 CACTTAGTGC
65 CACTTAGTGC
22131334 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22149118 original size:27 final size:26
Alignment explanation
Indices: 22149081--22149195 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
22149071 AGCATGGCTG
*
22149081 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
22149107 CCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATAA-TGTGACAGAGCCA
22149135 CCAGAACAGATATATGTGACAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * * *
22149162 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
22149189 CCAGAAC
1 CCAGAAC
22149196 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.06
27 56 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:22149145 original size:54 final size:54
Alignment explanation
Indices: 22149081--22149195 Score: 187
Period size: 54 Copynumber: 2.1 Consensus size: 54
22149071 AGCATGGCTG
*
22149081 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATTGTGGCAGAGCCA
* *
22149135 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCCA
22149189 CCAGAAC
1 CCAGAAC
22149196 GCTTCCTCCA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 38 0.67
55 19 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCCA
Found at i:22154187 original size:18 final size:19
Alignment explanation
Indices: 22154159--22154194 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
22154149 ATACAAATAC
22154159 TTTTATTATATTTTAGTTA
1 TTTTATTATATTTTAGTTA
22154178 TTTT-TTATATTTTAGTT
1 TTTTATTATATTTTAGTT
22154195 TAAATCCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (19 bp):
TTTTATTATATTTTAGTTA
Found at i:22156393 original size:42 final size:42
Alignment explanation
Indices: 22156314--22156428 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 42
22156304 GTACTAAACA
* * **
22156314 GAAACCCGTAAGGGTTAAACAAAAGCTCATAAAAGCTGAACG
1 GAAACCCATAAAGGTTAAACTGAAGCTCATAAAAGCTGAACG
* *
22156356 GAAACCCATAAAGGTTAAACTGAAGTTCA-AAAGAGCTGAACT
1 GAAACCCATAAAGGTTAAACTGAAGCTCATAAA-AGCTGAACG
* *
22156398 AAAACCCA-AAAGAGTTAAACTGAAACTCATA
1 GAAACCCATAAAG-GTTAAACTGAAGCTCATA
22156429 TGAGTTGACT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 7 0.11
42 53 0.87
43 1 0.02
ACGTcount: A:0.48, C:0.18, G:0.17, T:0.17
Consensus pattern (42 bp):
GAAACCCATAAAGGTTAAACTGAAGCTCATAAAAGCTGAACG
Found at i:22156418 original size:21 final size:21
Alignment explanation
Indices: 22156356--22156423 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
22156346 AAGCTGAACG
22156356 GAAACCCATAAAG-GTTAAACT
1 GAAACCCA-AAAGAGTTAAACT
*** * *
22156377 GAAGTTCAAAAGAGCTGAACT
1 GAAACCCAAAAGAGTTAAACT
*
22156398 AAAACCCAAAAGAGTTAAACT
1 GAAACCCAAAAGAGTTAAACT
22156419 GAAAC
1 GAAAC
22156424 TCATATGAGT
Statistics
Matches: 34, Mismatches: 12, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
20 4 0.12
21 30 0.88
ACGTcount: A:0.50, C:0.18, G:0.16, T:0.16
Consensus pattern (21 bp):
GAAACCCAAAAGAGTTAAACT
Found at i:22156433 original size:21 final size:20
Alignment explanation
Indices: 22156409--22156447 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22156399 AAACCCAAAA
22156409 GAGTTAAACTGAAACTCATAT
1 GAGTT-AACTGAAACTCATAT
* *
22156430 GAGTTGACTGAAGCTCAT
1 GAGTTAACTGAAACTCAT
22156448 GAGAGCTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (20 bp):
GAGTTAACTGAAACTCATAT
Found at i:22172538 original size:4 final size:4
Alignment explanation
Indices: 22172529--22172568 Score: 71
Period size: 4 Copynumber: 10.0 Consensus size: 4
22172519 GTTTAGGCTT
*
22172529 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TTTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
22172569 CCTGTCTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.25, C:0.23, G:0.00, T:0.53
Consensus pattern (4 bp):
TCTA
Found at i:22172576 original size:16 final size:16
Alignment explanation
Indices: 22172531--22172579 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
22172521 TTAGGCTTTC
*
22172531 TATCTATCTATCTATC
1 TATCTATCTATCTATT
22172547 TATCTATCTATCTATT
1 TATCTATCTATCTATT
* *
22172563 TATCTACCTGTCTATT
1 TATCTATCTATCTATT
22172579 T
1 T
22172580 GTAACGCCCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.22, C:0.22, G:0.02, T:0.53
Consensus pattern (16 bp):
TATCTATCTATCTATT
Found at i:22182103 original size:45 final size:45
Alignment explanation
Indices: 22181999--22182245 Score: 333
Period size: 45 Copynumber: 5.6 Consensus size: 45
22181989 TTTTCTCTAA
* * * *
22181999 TCACCGGCAT-TTCGCCTGCTAGGCTC-GAGGCTCGAA-A-TCATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATT
* * *
22182041 CCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAG-ATC
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAAT-AGTATT
* *
22182086 TCATCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGATTAGTATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
*
22182131 TCACCGGCATCATAACCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
22182176 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
* *
22182221 TCACCAGCATCATAGCCTACTAGGC
1 TCACCGGCATCATAGCCTGCTAGGC
22182246 CTGAAGCCCG
Statistics
Matches: 182, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
42 9 0.05
43 14 0.08
44 10 0.05
45 148 0.81
46 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
Found at i:22185699 original size:13 final size:13
Alignment explanation
Indices: 22185681--22185707 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22185671 TGTTTCCACG
22185681 AAGTTCAATATCT
1 AAGTTCAATATCT
22185694 AAGTTCAATATCT
1 AAGTTCAATATCT
22185707 A
1 A
22185708 CATGGTAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (13 bp):
AAGTTCAATATCT
Found at i:22189910 original size:42 final size:44
Alignment explanation
Indices: 22189815--22189967 Score: 188
Period size: 43 Copynumber: 3.6 Consensus size: 44
22189805 CAATGTGATA
* * * * *
22189815 TCCCAAATATGGTCTTACATGTTATCACATAT-CGATGCCACTA
1 TCCCAAACATGGTCTTACACGTAATCACATATACGATGCCAATG
22189858 TCCCAAACATGGTCTTACACG-AATCA-ATATACGATGCCAATG
1 TCCCAAACATGGTCTTACACGTAATCACATATACGATGCCAATG
* * *
22189900 CCCCATACATGGTCTTACACGTAATCACA-ATACAATGCCAATG
1 TCCCAAACATGGTCTTACACGTAATCACATATACGATGCCAATG
* *
22189943 TTCCAAACATGGTCTTACATGTAAT
1 TCCCAAACATGGTCTTACACGTAAT
22189968 TAAAACTCAA
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
41 4 0.04
42 32 0.34
43 58 0.61
44 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.28
Consensus pattern (44 bp):
TCCCAAACATGGTCTTACACGTAATCACATATACGATGCCAATG
Found at i:22194534 original size:28 final size:28
Alignment explanation
Indices: 22194494--22194549 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
22194484 ATTTATCAAT
22194494 GCAATAACTTTAATATCATAGAGAGTAA
1 GCAATAACTTTAATATCATAGAGAGTAA
22194522 GCAATAACTTTAATATCATAGAGAGTAA
1 GCAATAACTTTAATATCATAGAGAGTAA
22194550 AAGTACCGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (28 bp):
GCAATAACTTTAATATCATAGAGAGTAA
Done.