Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 69 of 343
Found at i:22491962 original size:3 final size:3
Alignment explanation
Indices: 22491947--22491976 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
22491937 TAAAGAAAAG
*
22491947 ATA ATA CTA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22491977 CAATTAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:22492380 original size:30 final size:29
Alignment explanation
Indices: 22492316--22492381 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
22492306 ATACAATAAT
* *
22492316 TAATATTATATATAAACTTTAATTTTATA
1 TAATTTTATATATAAACTTTAATTTGATA
*
22492345 TAATTTTATATATGAAATTTTAATTTGAT-
1 TAATTTTATATAT-AAACTTTAATTTGATA
22492374 TAAATTTT
1 T-AATTTT
22492382 CACAAATCAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 13 0.41
30 19 0.59
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.55
Consensus pattern (29 bp):
TAATTTTATATATAAACTTTAATTTGATA
Found at i:22494310 original size:21 final size:21
Alignment explanation
Indices: 22494286--22494327 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
22494276 TGATCTTCTA
22494286 TTTTTTTTAATTCAATCAATC
1 TTTTTTTTAATTCAATCAATC
22494307 TTTTTTTTAATTCAATCAATC
1 TTTTTTTTAATTCAATCAATC
22494328 ATAATTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTTTTTTAATTCAATCAATC
Found at i:22494695 original size:24 final size:24
Alignment explanation
Indices: 22494646--22494699 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
22494636 TGTCAACAAA
* **
22494646 ATTTTAATTTAACTTATTTAAATT
1 ATTTTAATTTAACTCATAAAAATT
22494670 ATTTTAATTTAACTCA-AAAAATTT
1 ATTTTAATTTAACTCATAAAAA-TT
22494694 ATTTTA
1 ATTTTA
22494700 TTAAATTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 3 0.12
24 23 0.88
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
ATTTTAATTTAACTCATAAAAATT
Found at i:22496458 original size:3 final size:3
Alignment explanation
Indices: 22496450--22496494 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
22496440 TCAATGGTAA
22496450 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
22496495 CTCAGAGTGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:22498145 original size:3 final size:3
Alignment explanation
Indices: 22498137--22498171 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
22498127 CACCAAAAAA
22498137 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
22498172 TTATGAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:22502565 original size:48 final size:48
Alignment explanation
Indices: 22502513--22502739 Score: 174
Period size: 48 Copynumber: 4.9 Consensus size: 48
22502503 CGGCAGTGAC
*
22502513 ATGTGGTCCCATGTAAGACCATGTCTGGGACATGGTTTTGGCATCATT
1 ATGTGGTCCCATGTAAGACCATGTCTGGGACATGGTATTGGCATCATT
* * *
22502561 ATGTGATCCCATGTAAGACCATGTCTGAGACAT-GTCATTGGCATCATA
1 ATGTGGTCCCATGTAAGACCATGTCTGGGACATGGT-ATTGGCATCATT
* * * * *
22502609 ATG-AGACATCGTGTAAGACCATAGT-TGGG-C----TA-TCG-A-C-TT
1 ATGTGGTC-CCATGTAAGACCAT-GTCTGGGACATGGTATTGGCATCATT
* * *
22502648 ATGTGTGACCCATGTAA-ATCCATGTCTGGGACATGGCATTGGCATCGTT
1 ATGTG-GTCCCATGTAAGA-CCATGTCTGGGACATGGTATTGGCATCATT
* * * *
22502697 ATGTGATCCCATGTAAGTCCATATCTGGGATATGGTATTGGCA
1 ATGTGGTCCCATGTAAGACCATGTCTGGGACATGGTATTGGCA
22502740 CCCTACCTTA
Statistics
Matches: 139, Mismatches: 23, Indels: 34
0.71 0.12 0.17
Matches are distributed among these distances:
39 7 0.05
40 15 0.11
41 5 0.04
42 2 0.01
43 1 0.01
44 1 0.01
45 1 0.01
46 2 0.01
47 5 0.04
48 91 0.65
49 9 0.06
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (48 bp):
ATGTGGTCCCATGTAAGACCATGTCTGGGACATGGTATTGGCATCATT
Found at i:22509061 original size:9 final size:9
Alignment explanation
Indices: 22509047--22509074 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
22509037 ATCATCTGCT
22509047 TCAAAGAAA
1 TCAAAGAAA
22509056 TCAAAGAAA
1 TCAAAGAAA
22509065 TCAAAGAAA
1 TCAAAGAAA
22509074 T
1 T
22509075 ATCATGATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.64, C:0.11, G:0.11, T:0.14
Consensus pattern (9 bp):
TCAAAGAAA
Found at i:22513277 original size:366 final size:366
Alignment explanation
Indices: 22512508--22513607 Score: 2060
Period size: 366 Copynumber: 3.0 Consensus size: 366
22512498 TTGCATAAGT
22512508 GTTTAATGTATGAAATTAATCACATACCCGATATTGTTCGATAATTGATAAGTCTCTTTTGAAGA
1 GTTTAATGTATGAAATTAATCACATACCCGATATTGTTCGATAATTGATAAGTCTCTTTTGAAGA
*
22512573 ATGAAATGGAATGGATATTGTATTTTCCCATATTGATTATAGTCCTGCATATGTTGTGGACATTA
66 ATGAAATGGAATGGATATTGTATTTTCCCGTATTGATTATAGTCCTGCATATGTTGTGGACATTA
* *
22512638 TAGCTCAGACGAGCAATCCTGTTATAAGCCCTCTCGAGCATCCTATTATATAGTTCCTGCGAGTA
131 TAGCTCGGACGAGCAATCCTGTTATAAGCCCTCTCGAGCATCCTGTTATATAGTTCCTGCGAGTA
*
22512703 TCCTGATTGGTAGTGATTCTGCATGTGTTGCGCACTACCATAGCTCTTTGTGAGCATCCTGTTAC
196 TCCTGATTGGTAGTGATTCTGCATGTGTTGCGCACTACCATAGCTCTTTGTGAGCAT-CTTTTAC
22512768 ATGAATCGATCGGTTGTGATCCAGCATTTACTGCAGACACAAAGGTAGCTCCTT-GTGAGTGTGC
260 ATGAATCGATCGGTTGTGATCCAGCATTTACTGCAGACACAAAGGTAGCT-CTTCGTGAGTGTGC
*
22512832 TGATATAGGCTCTTATGATCTTTCTGACATGACTCGCTTGAAA
324 TGATATAGGCTCTTATGATCTTTCTGACATGGCTCGCTTGAAA
*
22512875 GTTTAATGTATGAAATTAATCACATACCCGATATTGTTCGATAATTGATAAGTCCCTTTTGAAGA
1 GTTTAATGTATGAAATTAATCACATACCCGATATTGTTCGATAATTGATAAGTCTCTTTTGAAGA
22512940 ATGAAATGGAATGGATATTGTATTTTCCCGTATTGATTATAGTCCTGCATATGTTGTGGACATTA
66 ATGAAATGGAATGGATATTGTATTTTCCCGTATTGATTATAGTCCTGCATATGTTGTGGACATTA
22513005 TAGCTCGGACGAGCAATCCTGTTATAAGCCCTCTCGAGCATCCTGTTATATAGTTCCTGCGAGTA
131 TAGCTCGGACGAGCAATCCTGTTATAAGCCCTCTCGAGCATCCTGTTATATAGTTCCTGCGAGTA
22513070 T-CTGATTGGTAGTGATTCTGCATGTGTTGCGCACTACCATAGCTCTTTGTGAGCATCTTCTTAC
196 TCCTGATTGGTAGTGATTCTGCATGTGTTGCGCACTACCATAGCTCTTTGTGAGCATCTT-TTAC
*
22513134 ATAAATCGATCGGTTGTGATCCAGCATTTACTGCAGACACAAAGGTAGCTCTTCGTGAGTGTGCT
260 ATGAATCGATCGGTTGTGATCCAGCATTTACTGCAGACACAAAGGTAGCTCTTCGTGAGTGTGCT
22513199 GATATAGGCTCTTATGATCTTTCTGACATGGCTCGCTTGAAA
325 GATATAGGCTCTTATGATCTTTCTGACATGGCTCGCTTGAAA
22513241 GTTTAATGTATGAAATTAATCACATACCCGATATTGTTCGATAATTGATAAGTCTCTTTTGAAGA
1 GTTTAATGTATGAAATTAATCACATACCCGATATTGTTCGATAATTGATAAGTCTCTTTTGAAGA
22513306 ATGAAATGGAATGGATATTGTATTTTCCCGTATTGATTATAGTCCTGCATATGTTGTGGACATTA
66 ATGAAATGGAATGGATATTGTATTTTCCCGTATTGATTATAGTCCTGCATATGTTGTGGACATTA
22513371 TAGCTCGGACGAGCAATCCTGTTATAAGCCCTCTCGAGCATCCTGTTATATAGTTCCTGCGAGTA
131 TAGCTCGGACGAGCAATCCTGTTATAAGCCCTCTCGAGCATCCTGTTATATAGTTCCTGCGAGTA
*
22513436 TCCTGATTGGTAGTGATTCTGCATGTGTTGCGCACTACCATAGCTCTTTGTGAGCGTCCTTTTAC
196 TCCTGATTGGTAGTGATTCTGCATGTGTTGCGCACTACCATAGCTCTTTGTGAGCAT-CTTTTAC
* *
22513501 ATGAATCGATCGATTGTGGTCCAGCATTTACTGCAGACACAAAGGTAGCTCTTCGTGAGTGTGCT
260 ATGAATCGATCGGTTGTGATCCAGCATTTACTGCAGACACAAAGGTAGCTCTTCGTGAGTGTGCT
22513566 GATATAGGCTCTTATGATCTTTCTGACATGGCTCGCTTGAAA
325 GATATAGGCTCTTATGATCTTTCTGACATGGCTCGCTTGAAA
22513608 TCCCTATTAT
Statistics
Matches: 717, Mismatches: 12, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
365 5 0.01
366 355 0.50
367 354 0.49
368 3 0.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (366 bp):
GTTTAATGTATGAAATTAATCACATACCCGATATTGTTCGATAATTGATAAGTCTCTTTTGAAGA
ATGAAATGGAATGGATATTGTATTTTCCCGTATTGATTATAGTCCTGCATATGTTGTGGACATTA
TAGCTCGGACGAGCAATCCTGTTATAAGCCCTCTCGAGCATCCTGTTATATAGTTCCTGCGAGTA
TCCTGATTGGTAGTGATTCTGCATGTGTTGCGCACTACCATAGCTCTTTGTGAGCATCTTTTACA
TGAATCGATCGGTTGTGATCCAGCATTTACTGCAGACACAAAGGTAGCTCTTCGTGAGTGTGCTG
ATATAGGCTCTTATGATCTTTCTGACATGGCTCGCTTGAAA
Found at i:22515168 original size:10 final size:10
Alignment explanation
Indices: 22515142--22515171 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
22515132 ATTTTACAAG
22515142 TAATTTTGAT
1 TAATTTTGAT
22515152 TAATTTTGAT
1 TAATTTTGAT
*
22515162 TATTTTTGAT
1 TAATTTTGAT
22515172 AGATTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (10 bp):
TAATTTTGAT
Found at i:22523191 original size:19 final size:19
Alignment explanation
Indices: 22523167--22523205 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
22523157 GCTCCCATCG
*
22523167 CGTGCTGCACGTCCTGCTT
1 CGTGCTCCACGTCCTGCTT
* *
22523186 CGTGCTCCTCGTGCTGCTT
1 CGTGCTCCACGTCCTGCTT
22523205 C
1 C
22523206 TAGCTCCAGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.03, C:0.38, G:0.26, T:0.33
Consensus pattern (19 bp):
CGTGCTCCACGTCCTGCTT
Found at i:22543919 original size:17 final size:17
Alignment explanation
Indices: 22543897--22543930 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
22543887 AGAATAATTC
22543897 ATAAACTTAACCATGCT
1 ATAAACTTAACCATGCT
22543914 ATAAACTTAACCATGCT
1 ATAAACTTAACCATGCT
22543931 CCTTTGTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (17 bp):
ATAAACTTAACCATGCT
Found at i:22544191 original size:43 final size:43
Alignment explanation
Indices: 22544133--22544281 Score: 133
Period size: 43 Copynumber: 3.5 Consensus size: 43
22544123 CAATGCCGAC
* * *
22544133 GTCCCAGACATGGTCTTACATGTAATTCGATATCGATGCCTTT
1 GTCCCAGACAAGGTCTTACACGTAATTCGATATCGATGCCTAT
* * * *
22544176 GTCCCAGACAAGGTCTTACACGAAATTAGAT-GCGATGCCGAT
1 GTCCCAGACAAGGTCTTACACGTAATTCGATATCGATGCCTAT
* * * * * *
22544218 GTCCCAGACATGGTCTTATACGTAAATCTC-AAATCAAAGCCTGT
1 GTCCCAGACAAGGTCTTACACGT-AAT-TCGATATCGATGCCTAT
22544262 GTCCCAGACACA-GTCTTACA
1 GTCCCAGACA-AGGTCTTACA
22544282 TGATATTTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 7
0.76 0.17 0.06
Matches are distributed among these distances:
42 28 0.34
43 31 0.37
44 24 0.29
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (43 bp):
GTCCCAGACAAGGTCTTACACGTAATTCGATATCGATGCCTAT
Found at i:22544225 original size:42 final size:43
Alignment explanation
Indices: 22544125--22544244 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 43
22544115 AACAAGTACA
* * * * *
22544125 ATGCCGACGTCCCAGACATGGTCTTACATGTAATTCGATATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATTAGATAGCG
** *
22544168 ATGCCTTTGTCCCAGACAAGGTCTTACACGAAATTAGAT-GCG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATTAGATAGCG
*
22544210 ATGCCGATGTCCCAGACATGGTCTTATACGTAAAT
1 ATGCCGATGTCCCAGACATGGTCTTACACG-AAAT
22544245 CTCAAATCAA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 28 0.44
43 36 0.56
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGAAATTAGATAGCG
Found at i:22546014 original size:8 final size:8
Alignment explanation
Indices: 22546001--22546028 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
22545991 GGTTTATGAT
22546001 ATGATTTC
1 ATGATTTC
22546009 ATGATTTC
1 ATGATTTC
22546017 ATGATTTC
1 ATGATTTC
22546025 ATGA
1 ATGA
22546029 AAATTTCGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (8 bp):
ATGATTTC
Found at i:22549555 original size:27 final size:27
Alignment explanation
Indices: 22549524--22549673 Score: 126
Period size: 27 Copynumber: 5.5 Consensus size: 27
22549514 TTAGTTTACC
* *
22549524 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
22549551 AAATTA-CCAAAGTACCCCCAATTTATA
1 AAATTATCGAAA-TACCCTCGATTTGTA
* *
22549578 AAATTATCCAAATATCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
22549605 AAATTACCGAAATACCCTC-AGTTTGCA
1 AAATTATCGAAATACCCTCGA-TTTGTA
* * *
22549632 AAATTATTGAAATACCTTGGATTTTGTA
1 AAATTATCGAAATACCCTCGA-TTTGTA
22549660 AAATTA-CTGAAATA
1 AAATTATC-GAAATA
22549674 GAATTACCAT
Statistics
Matches: 97, Mismatches: 21, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
26 4 0.04
27 70 0.72
28 23 0.24
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:22549606 original size:54 final size:53
Alignment explanation
Indices: 22549518--22549673 Score: 170
Period size: 54 Copynumber: 2.9 Consensus size: 53
22549508 AATACTTTAG
* *
22549518 TTTACCAAATTATTGAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCCCAA
1 TTTACAAAATTATTGAAATA-CCTCGATTTGTAAAATTACCGAAA-TACCCCCAA
* ** * *
22549572 TTTATAAAATTATCCAAATATCCTCGATTTGTAAAATTACCGAAATACCCTCAG
1 TTTACAAAATTATTGAAATA-CCTCGATTTGTAAAATTACCGAAATACCCCCAA
* * *
22549626 TTTGCAAAATTATTGAAATACCTTGGATTTTGTAAAATTACTGAAATA
1 TTTACAAAATTATTGAAATACC-TCGA-TTTGTAAAATTACCGAAATA
22549674 GAATTACCAT
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.02
54 61 0.72
55 22 0.26
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (53 bp):
TTTACAAAATTATTGAAATACCTCGATTTGTAAAATTACCGAAATACCCCCAA
Found at i:22549814 original size:27 final size:27
Alignment explanation
Indices: 22549671--22549806 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
22549661 AATTACTGAA
*
22549671 ATAGAATTACCATTTTACCCTCGATTG
1 ATAGAATTACCATTTTACCCTCGATTT
**
22549698 ATAGAATTACTGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* *
22549725 ATAGAATTACCATTTCACCCTTGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* * * **
22549752 TTAGAATTACCGTCTTACCCTTAATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
22549779 ACAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
22549806 A
1 A
22549807 CAAAATTATT
Statistics
Matches: 91, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
ATAGAATTACCATTTTACCCTCGATTT
Found at i:22549825 original size:54 final size:54
Alignment explanation
Indices: 22549671--22550042 Score: 223
Period size: 54 Copynumber: 6.9 Consensus size: 54
22549661 AATTACTGAA
* * *** **
22549671 ATAGAATTACCATTTTACCCTCGATTGATAGAATTACTGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTATAAAATTACTGAAATACCCTTAATTT
* * * * * ***
22549725 ATAGAATTACCATTTCACCCTTGATTTTTAGAATTACCGTCTTACCCTTAATTT
1 ATAGAATTACCATTTTACCCTCGATTTATAAAATTACTGAAATACCCTTAATTT
* * * **
22549779 ACAGAATTACCATTTTACCCTCGATTTACAAAATTATTGAAATACCCTTGGTTT
1 ATAGAATTACCATTTTACCCTCGATTTATAAAATTACTGAAATACCCTTAATTT
* * * *** * * *
22549833 GTAAAATTACTAAAATACCC-CTGGTTTGTAAAATTACTAAAATACCCCTTAATTT
1 ATAGAATTACCATTTTACCCTC-GATTTATAAAATTACTGAAATA-CCCTTAATTT
* * * ** * *
22549888 GTAAAATTACTGA-AATACCCTCGACTTGTA-AAAATTAC-CAAAGTACTCTTAATTT
1 ATAGAATTAC-CATTTTACCCTCGA-TT-TATAAAATTACTGAAA-TACCCTTAATTT
*** * ***
22549943 ATAGAATTATTGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTTAATTT
1 ATAGAATTACCATTTTACCCTCGATTTATAAAATTACTGAAATACCCTTAATTT
* * * * *
22549997 ACAAAATTACCGTTTTACCCTCGA-TTGTGAAATTACTGAAATACCC
1 ATAGAATTACCATTTTACCCTCGATTTATAAAATTACTGAAATACCC
22550043 CTATAGGGTA
Statistics
Matches: 246, Mismatches: 62, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
53 19 0.08
54 158 0.64
55 54 0.22
56 14 0.06
57 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTATAAAATTACTGAAATACCCTTAATTT
Found at i:22549921 original size:28 final size:27
Alignment explanation
Indices: 22549794--22550205 Score: 145
Period size: 27 Copynumber: 15.2 Consensus size: 27
22549784 ATTACCATTT
** * *
22549794 TACCCTCGATTTACAAAATTATTGAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
* *
22549821 TACCCTTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
*
22549848 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTGTAAAATTACTAAAA
** *
22549875 TACCCCTTAATTTGTAAAATTACTGAAA
1 TA-CCCTCGATTTGTAAAATTACTAAAA
* * *
22549903 TACCCTCGACTTGTAAAAATTACCAAAG
1 TACCCTCGATTTGT-AAAATTACTAAAA
* ** * * * ****
22549931 TACTCTTAATTTATAGAATTATTGTTT
1 TACCCTCGATTTGTAAAATTACTAAAA
** ****
22549958 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTGTAAAATTACTAAAA
** ** *****
22549985 TACCCTTAATTTACAAAATTACCGTTT
1 TACCCTCGATTTGTAAAATTACTAAAA
* *
22550012 TACCCTCGA-TTGTGAAATTACTGAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
* ** * *
22550038 TACCC-CTATAGGGTAGAATTACCAAAA
1 TACCCTCGAT-TTGTAAAATTACTAAAA
* * *
22550065 CACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACTAAAA
* * *
22550092 TACCACTTG-TTTGTGAAATTACTGAAA
1 TACC-CTCGATTTGTAAAATTACTAAAA
* * * *
22550119 TACCTTCAATTTTTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
**
22550146 TACCC-CTGATTTACAAAATTA-TAGAAA
1 TACCCTC-GATTTGTAAAATTACTA-AAA
* * * *
22550173 TACCCTTGATTTGTAGATTTACCAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
*
22550200 CACCCT
1 TACCCT
22550206 TATAGGATGA
Statistics
Matches: 288, Mismatches: 83, Indels: 28
0.72 0.21 0.07
Matches are distributed among these distances:
25 2 0.01
26 18 0.06
27 224 0.78
28 44 0.15
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACTAAAA
Found at i:22550223 original size:27 final size:27
Alignment explanation
Indices: 22550193--22550249 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
22550183 TTGTAGATTT
* *
22550193 ACCAAAACA-CCCTTATAGGATGAAAAG
1 ACCAAAACACCCCTAATAGG-TAAAAAG
*
22550220 ACCAAAATACCCCTAATAGGTAAAAAG
1 ACCAAAACACCCCTAATAGGTAAAAAG
22550247 ACC
1 ACC
22550250 GTAAAGCCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 17 0.65
28 9 0.35
ACGTcount: A:0.49, C:0.25, G:0.12, T:0.14
Consensus pattern (27 bp):
ACCAAAACACCCCTAATAGGTAAAAAG
Found at i:22550265 original size:26 final size:27
Alignment explanation
Indices: 22550215--22550298 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
22550205 TTATAGGATG
** *
22550215 AAAAGACCAAAATACCCCTAATA-GGTA
1 AAAAGACCGTAATACCCCT-GTAGGGTA
22550242 AAAAGACCGTAA-AGCCCCTGTAGGGTA
1 AAAAGACCGTAATA-CCCCTGTAGGGTA
* * *
22550269 AAATGACCGTAATACCCTTGTATGGTA
1 AAAAGACCGTAATACCCCTGTAGGGTA
22550296 AAA
1 AAA
22550299 TGATGAATAC
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
26 3 0.06
27 44 0.92
28 1 0.02
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (27 bp):
AAAAGACCGTAATACCCCTGTAGGGTA
Found at i:22550290 original size:27 final size:27
Alignment explanation
Indices: 22550238--22550301 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
22550228 ACCCCTAATA
*
22550238 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
22550265 GGTAAAATGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
22550292 GGTAAAATGA
1 GGTAAAATGA
22550302 TGAATACGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:22551032 original size:20 final size:20
Alignment explanation
Indices: 22550999--22551073 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
22550989 ATACGTGGGA
22550999 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
22551016 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
* *
22551037 TATAAAATGCACATGATATG
1 TATGATATGCACATGATATG
22551057 TATGA-ATTGCACATGAT
1 TATGATA-TGCACATGAT
22551074 GTATTCATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.16
19 1 0.02
20 39 0.78
21 2 0.04
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:22551220 original size:25 final size:26
Alignment explanation
Indices: 22551123--22551296 Score: 264
Period size: 26 Copynumber: 6.8 Consensus size: 26
22551113 GAGGAAGTGC
*
22551123 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
22551149 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
22551175 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
22551201 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
22551226 AAAAGAGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
22551252 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
22551277 AAAAGGACGT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
22551297 ATTAAAAGAG
Statistics
Matches: 138, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
25 54 0.39
26 84 0.61
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:22551236 original size:51 final size:51
Alignment explanation
Indices: 22551123--22551309 Score: 281
Period size: 51 Copynumber: 3.7 Consensus size: 51
22551113 GAGGAAGTGC
22551123 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTATCG
*
22551175 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTATCG
* **
22551226 AAAAGAGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTATCG
* *
22551277 AAAAGGACGT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
22551310 AGGCCTCCAG
Statistics
Matches: 124, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
48 5 0.04
49 7 0.06
50 8 0.06
51 68 0.55
52 36 0.29
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTATCG
Found at i:22551507 original size:42 final size:42
Alignment explanation
Indices: 22551443--22551533 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
22551433 AGTCTCCCCC
* * ** *
22551443 AATGGGCTTGTATACATTCATTGGTATTTCATATGATATTGA
1 AATGGGCTTGCATACATCCATTGACATTACATATGATATTGA
*
22551485 AATGGGCTTGCATACATCCATTGACATTACATGTGATATTGA
1 AATGGGCTTGCATACATCCATTGACATTACATATGATATTGA
22551527 AATGGGC
1 AATGGGC
22551534 CTATGGGCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (42 bp):
AATGGGCTTGCATACATCCATTGACATTACATATGATATTGA
Found at i:22551662 original size:31 final size:31
Alignment explanation
Indices: 22551557--22551658 Score: 168
Period size: 31 Copynumber: 3.3 Consensus size: 31
22551547 CGTTTACAGT
* *
22551557 AAAGGCTTCAGCCCAGTGAAATGATTTATGG
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
22551588 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
* *
22551619 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
22551650 AAAGGCTTC
1 AAAGGCTTC
22551659 GGCCTAGTAA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 67 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:22555731 original size:36 final size:36
Alignment explanation
Indices: 22555691--22555763 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
22555681 TTGAAGAGAT
22555691 AGAAAAAGTAGAAGGAATCAAATCTAATGATGGGTG
1 AGAAAAAGTAGAAGGAATCAAATCTAATGATGGGTG
22555727 AGAAAAAGTAGAAGGAATCAAATCTAATGATGGGTG
1 AGAAAAAGTAGAAGGAATCAAATCTAATGATGGGTG
22555763 A
1 A
22555764 TTAGCTTGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.48, C:0.05, G:0.27, T:0.19
Consensus pattern (36 bp):
AGAAAAAGTAGAAGGAATCAAATCTAATGATGGGTG
Found at i:22564375 original size:50 final size:50
Alignment explanation
Indices: 22564256--22564549 Score: 320
Period size: 50 Copynumber: 5.8 Consensus size: 50
22564246 GTTGTGAGAA
* * ** *
22564256 CACATGTCTAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCA-GATTGTTAGGT
*
22564308 CACATGTGTAGTACTAAGTGCAGGCTTCTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * * * * *
22564358 CGCATATGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGATTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGT
* * * * *
22564409 CACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * *
22564459 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* **
22564509 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
22564550 GAGCTTCGGT
Statistics
Matches: 201, Mismatches: 39, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
49 3 0.01
50 129 0.64
51 38 0.19
52 31 0.15
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:22564389 original size:24 final size:24
Alignment explanation
Indices: 22564314--22564389 Score: 57
Period size: 24 Copynumber: 3.1 Consensus size: 24
22564304 AGGTCACATG
* *
22564314 TGTAGTACTAAGTGCAGGCTTCTA
1 TGTAGTACTAAGTGTAGGCTACTA
* * *
22564338 TGT-GTACCAGATTGTTAGG-TCGCATA
1 TGTAGTACTA-AGTG-TAGGCT-AC-TA
22564364 TGTAGTACTAAGTGTAGGCTACTA
1 TGTAGTACTAAGTGTAGGCTACTA
22564388 TG
1 TG
22564390 CGTACCCGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 12
0.67 0.12 0.21
Matches are distributed among these distances:
23 5 0.13
24 11 0.28
25 9 0.23
26 9 0.23
27 5 0.13
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.34
Consensus pattern (24 bp):
TGTAGTACTAAGTGTAGGCTACTA
Found at i:22564444 original size:101 final size:100
Alignment explanation
Indices: 22564302--22564538 Score: 312
Period size: 101 Copynumber: 2.4 Consensus size: 100
22564292 TAAGACGGTT
* * * * *
22564302 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTTCTATGTGTACCAGATTGTTAGGTCGCATATGT
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATATGT
* **
22564367 AGTACTAAGTGTAGGCTACTATGCGTACCCGATAG
66 AGTACTAAGTGTAGGCTACTACGCGTACCAAATAG
* * * * *
22564402 ATTCGATCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTG
1 -TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATATG
* *
22564467 TAGTACTAAGTGTAGGCTACTACGTGTACCAAATTG
65 TAGTACTAAGTGTAGGCTACTACGCGTACCAAATAG
* *
22564503 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTA
22564539 TGCATACCAG
Statistics
Matches: 116, Mismatches: 20, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
100 31 0.27
101 85 0.73
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (100 bp):
TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATATGT
AGTACTAAGTGTAGGCTACTACGCGTACCAAATAG
Found at i:22564584 original size:151 final size:152
Alignment explanation
Indices: 22564264--22564584 Score: 401
Period size: 151 Copynumber: 2.1 Consensus size: 152
22564254 AACACATGTC
* * *
22564264 TAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTTTTAGGTCACATGTGTAGTACTAAGTGC
1 TAGTAATATGTGCAGGCTACTACGTGTATAAGACGG-TTTAGGTCACATGTGTAGTACTAAGTGC
* * * * *
22564329 AGGCTTCTATGTGTACCAGATTGTTAGGTCGCATATGTAGTACTAAGTGTAGGCTACTATGCGTA
65 AGGCTACTACGTGTACCAAATTGTTAGGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCATA
* * ** *
22564394 CCCGATAGATTCGATCACGTGTG
130 CCAGAGAGATTCGATCACAAGGG
* ** * * *
22564417 TAGTACTAAATGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACATGTGTAGTACTAAGTGTA
1 TAGTAATATGTGCAGGCTACTACGTGTATAAGACGGTTTAGGTCACATGTGTAGTACTAAGTGCA
*
22564481 GGCTACTACGTGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATAC
66 GGCTACTACGTGTACCAAATTGTTAGGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCATAC
* * *
22564546 CAGAGAGCTTCGGTTACAAGGG
131 CAGAGAGATTCGATCACAAGGG
* *
22564568 TGGTAATATGTACAGGC
1 TAGTAATATGTGCAGGC
22564585 CACCGGGTAT
Statistics
Matches: 142, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
151 112 0.79
153 30 0.21
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (152 bp):
TAGTAATATGTGCAGGCTACTACGTGTATAAGACGGTTTAGGTCACATGTGTAGTACTAAGTGCA
GGCTACTACGTGTACCAAATTGTTAGGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCATAC
CAGAGAGATTCGATCACAAGGG
Found at i:22567595 original size:25 final size:25
Alignment explanation
Indices: 22567547--22567595 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
22567537 TGATAATATG
* * * *
22567547 AAAAATGACTATTTTTCCCTTAGGT
1 AAAAATGACCATTATACCCCTAGGT
22567572 AAAAATGACCATTATACCCCTAGG
1 AAAAATGACCATTATACCCCTAGG
22567596 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:22567658 original size:11 final size:10
Alignment explanation
Indices: 22567626--22567681 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 10
22567616 CACGAGATTT
22567626 TGATAT-ACA
1 TGATATGACA
*
22567635 TGATTTGACA
1 TGATATGACA
22567645 TGATATGCACA
1 TGATATG-ACA
*
22567656 TGATATG-TA
1 TGATATGACA
*
22567665 TGAAATGCACA
1 TGATATG-ACA
22567676 TGATAT
1 TGATAT
22567682 ATTCATATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 12 0.32
10 9 0.24
11 16 0.43
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.34
Consensus pattern (10 bp):
TGATATGACA
Found at i:22567672 original size:20 final size:20
Alignment explanation
Indices: 22567644--22567681 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
22567634 ATGATTTGAC
*
22567644 ATGATATGCACATGATATGT
1 ATGAAATGCACATGATATGT
22567664 ATGAAATGCACATGATAT
1 ATGAAATGCACATGATAT
22567682 ATTCATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
ATGAAATGCACATGATATGT
Found at i:22567784 original size:24 final size:25
Alignment explanation
Indices: 22567727--22567795 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
22567717 GAGGAAGTGA
*
22567727 AAAAGGGCTTTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
22567752 AAAAGGGCTTTGCCCCAGTTTACC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
22567776 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
22567796 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
24 20 0.47
25 23 0.53
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:22567808 original size:24 final size:23
Alignment explanation
Indices: 22567727--22567822 Score: 93
Period size: 25 Copynumber: 4.0 Consensus size: 23
22567717 GAGGAAGTGA
* *
22567727 AAAAGGGCTTTGCCCCAATTTACC
1 AAAAGGGCTTTGCCCC-AGTTATC
*
22567751 GAAAAGGGCTTTGCCCCAGTTTACC
1 -AAAAGGGCTTTGCCCCAG-TTATC
*
22567776 AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTTGCCCCAGTTATC
* *
22567799 AAAAGAGGCTATGCCTCCAATTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
22567823 ATGATAAAGT
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
23 8 0.13
24 27 0.43
25 28 0.44
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:22575659 original size:19 final size:19
Alignment explanation
Indices: 22575635--22575693 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
22575625 CATAACACAT
22575635 TTCATTCATCAACACTTAA
1 TTCATTCATCAACACTTAA
* * *
22575654 TTCATT-TTC--CA-TCAT
1 TTCATTCATCAACACTTAA
22575669 TTCATTCATCAACACTTAA
1 TTCATTCATCAACACTTAA
22575688 TTCATT
1 TTCATT
22575694 TTCCATCTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
15 8 0.27
16 4 0.13
18 4 0.13
19 14 0.47
ACGTcount: A:0.31, C:0.25, G:0.00, T:0.44
Consensus pattern (19 bp):
TTCATTCATCAACACTTAA
Found at i:22575670 original size:34 final size:34
Alignment explanation
Indices: 22575632--22575700 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
22575622 GTACATAACA
22575632 CATTTCATTCATCAACACTTAATTCATTTTCCAT
1 CATTTCATTCATCAACACTTAATTCATTTTCCAT
22575666 CATTTCATTCATCAACACTTAATTCATTTTCCAT
1 CATTTCATTCATCAACACTTAATTCATTTTCCAT
22575700 C
1 C
22575701 TCACTACTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.28, G:0.00, T:0.43
Consensus pattern (34 bp):
CATTTCATTCATCAACACTTAATTCATTTTCCAT
Found at i:22577627 original size:47 final size:46
Alignment explanation
Indices: 22577554--22577683 Score: 151
Period size: 47 Copynumber: 2.8 Consensus size: 46
22577544 TCACTTGTGT
*
22577554 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGA-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACATTGA-GAC
* *
22577600 GAGCCAGTGTAAGACCATGTTTGGGACATGGCAT-TG-ACATTGAGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACATTGAGAC
22577646 GAGCGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GAGC-C-AGTGTAAGACATGTCTGGGACATGCATCGGC
22577684 TATGAAATGT
Statistics
Matches: 71, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
45 7 0.10
46 22 0.31
47 29 0.41
48 13 0.18
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACATTGAGAC
Found at i:22585244 original size:47 final size:46
Alignment explanation
Indices: 22585134--22585254 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 46
22585124 ACTTGTGTAA
*
22585134 CCTAGTGTAAGACATGCCTGGGACAT-GCATCGGCCACATTATGAGAG
1 CCTAGTGTAAGACATGTCTGGGACATGGCATCGG-C-CATTATGAGAG
*
22585181 CC-AGTGTAAGACCATGTTTGGGACATGGCATCGG-CATTGA-GACGAG
1 CCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCATT-ATGA-GAG
22585227 CGCTAGTGTAAGACATGTCTGGGACATG
1 C-CTAGTGTAAGACATGTCTGGGACATG
22585255 CATTCACCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
45 6 0.09
46 14 0.22
47 29 0.45
48 16 0.25
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (46 bp):
CCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCATTATGAGAG
Found at i:22586259 original size:54 final size:54
Alignment explanation
Indices: 22586171--22586282 Score: 170
Period size: 54 Copynumber: 2.1 Consensus size: 54
22586161 GTAAACGCAT
* *
22586171 GGGCAGAGACACGACCGTGTGTCCCAGCCGTGTGAAAGACACGGCCTAGAACAC
1 GGGCAGAGACACGACCATGTGTCCCAGCCATGTGAAAGACACGGCCTAGAACAC
* * * *
22586225 GGGCAGAGACACGACCATGTGTCTCAGCTATGTGAAGGACACGGCCTAGCACAC
1 GGGCAGAGACACGACCATGTGTCCCAGCCATGTGAAAGACACGGCCTAGAACAC
22586279 GGGC
1 GGGC
22586283 TTGTGCCTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.27, C:0.29, G:0.32, T:0.12
Consensus pattern (54 bp):
GGGCAGAGACACGACCATGTGTCCCAGCCATGTGAAAGACACGGCCTAGAACAC
Found at i:22586974 original size:20 final size:20
Alignment explanation
Indices: 22586951--22587004 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
22586941 AAACCCCTTT
*
22586951 CATTTACTTACTTTTCATTG
1 CATTTACTTACTTTCCATTG
22586971 CATTTACTTACTTTCCATTG
1 CATTTACTTACTTTCCATTG
*
22586991 CATTTACTTTCTTT
1 CATTTACTTACTTT
22587005 AACTCAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.22, G:0.04, T:0.56
Consensus pattern (20 bp):
CATTTACTTACTTTCCATTG
Found at i:22593099 original size:20 final size:20
Alignment explanation
Indices: 22593075--22593148 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 20
22593065 GAACCCCTTT
*
22593075 CATTTACTTACTTTTCATTG
1 CATTTACTTACTTTCCATTG
* *
22593095 TATTTACTTACTGTCCATTG
1 CATTTACTTACTTTCCATTG
* *
22593115 CATTTACATACTTGCCATTG
1 CATTTACTTACTTTCCATTG
*
22593135 CATTTACTTTCTTT
1 CATTTACTTACTTT
22593149 ATCTCAAATA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.20, C:0.22, G:0.07, T:0.51
Consensus pattern (20 bp):
CATTTACTTACTTTCCATTG
Found at i:22596546 original size:42 final size:43
Alignment explanation
Indices: 22596483--22596573 Score: 105
Period size: 42 Copynumber: 2.1 Consensus size: 43
22596473 TGTGTCTCAT
* *
22596483 AATCATGAACTCAAATCACAACAC-ATGATTTCAAATCACATA
1 AATCATGAACTCAAATCACAACACAATGAGTTCAAAGCACATA
* * *
22596525 AATCATGAACTCAGA-CTACAACTCAATGAGTTCAGAGCACATA
1 AATCATGAACTCAAATC-ACAACACAATGAGTTCAAAGCACATA
*
22596568 ATTCAT
1 AATCAT
22596574 AGTGACATGC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
41 1 0.02
42 20 0.49
43 20 0.49
ACGTcount: A:0.44, C:0.23, G:0.09, T:0.24
Consensus pattern (43 bp):
AATCATGAACTCAAATCACAACACAATGAGTTCAAAGCACATA
Found at i:22603405 original size:40 final size:41
Alignment explanation
Indices: 22603327--22603406 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 41
22603317 ACAGGGGTTT
22603327 TCACACGGCCTGACACATGCCCGTGTCTATAGCCTGTGTCCC
1 TCACACGGCCTGACACA-GCCCGTGTCTATAGCCTGTGTCCC
* *
22603369 TCACACGGCCATGACAC-GTCCGTGTC-CTAGCCTGTGTC
1 TCACACGGCC-TGACACAGCCCGTGTCTATAGCCTGTGTC
22603407 TAAAAACCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 11 0.31
41 8 0.23
42 10 0.29
43 6 0.17
ACGTcount: A:0.16, C:0.38, G:0.23, T:0.24
Consensus pattern (41 bp):
TCACACGGCCTGACACAGCCCGTGTCTATAGCCTGTGTCCC
Found at i:22607693 original size:46 final size:46
Alignment explanation
Indices: 22607643--22607815 Score: 221
Period size: 46 Copynumber: 3.7 Consensus size: 46
22607633 TGGTTGAGCA
22607643 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22607689 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
22607734 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
22607782 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
22607816 AGGGCGGGTT
Statistics
Matches: 110, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 59 0.54
47 29 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22607799 original size:93 final size:93
Alignment explanation
Indices: 22607640--22607810 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
22607630 GGATGGTTGA
22607640 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
22607705 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
22607733 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
22607797 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
22607811 ACTTAAGGGC
Statistics
Matches: 76, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22623992 original size:16 final size:16
Alignment explanation
Indices: 22623971--22624003 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
22623961 TCAGTTAAAA
22623971 AAAGTAGAGAGTTGGT
1 AAAGTAGAGAGTTGGT
22623987 AAAGTAGAGAGTTGGT
1 AAAGTAGAGAGTTGGT
22624003 A
1 A
22624004 GACTCTACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.36, T:0.24
Consensus pattern (16 bp):
AAAGTAGAGAGTTGGT
Found at i:22625184 original size:27 final size:27
Alignment explanation
Indices: 22625146--22625205 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
22625136 TCAGTGTCAG
*
22625146 TAAACATGGGATAGTCCA-CTGAGACGA
1 TAAACATGGGATAATCCATC-GAGACGA
*
22625173 TAAACATGGGATAATCCATCGAGACGG
1 TAAACATGGGATAATCCATCGAGACGA
22625200 TAAACA
1 TAAACA
22625206 CAGGAGAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.18
Consensus pattern (27 bp):
TAAACATGGGATAATCCATCGAGACGA
Found at i:22631686 original size:24 final size:23
Alignment explanation
Indices: 22631651--22631696 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
22631641 TCGACAGCCT
* *
22631651 ACTTTTTGGCTTTTTGGCTTTTCG
1 ACTTTTTAGCTTTTCGG-TTTTCG
22631675 ACTTTTTAGCTTTTCGGTTTTC
1 ACTTTTTAGCTTTTCGGTTTTC
22631697 AGCTATTGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.07, C:0.17, G:0.17, T:0.59
Consensus pattern (23 bp):
ACTTTTTAGCTTTTCGGTTTTCG
Found at i:22631695 original size:15 final size:16
Alignment explanation
Indices: 22631660--22631690 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22631650 TACTTTTTGG
*
22631660 CTTTTTGGCTTTTCGA
1 CTTTTTAGCTTTTCGA
22631676 CTTTTTAGCTTTTCG
1 CTTTTTAGCTTTTCG
22631691 GTTTTCAGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.19, G:0.16, T:0.58
Consensus pattern (16 bp):
CTTTTTAGCTTTTCGA
Found at i:22633732 original size:27 final size:26
Alignment explanation
Indices: 22633701--22633877 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
22633691 TAAATTGTAC
22633701 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
22633728 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
22633754 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
22633782 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
22633810 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
22633837 GGCACTAAGTGTGCGAGTTGA-TATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
22633863 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22633878 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
26 17 0.14
27 83 0.66
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:22633817 original size:82 final size:81
Alignment explanation
Indices: 22633702--22633857 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
22633692 AAATTGTACA
* * *
22633702 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
22633766 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
22633783 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
22633848 TGCGAGTTGA
65 TGCGAATTGA
22633858 TATATAGCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22633825 original size:55 final size:53
Alignment explanation
Indices: 22633701--22633877 Score: 205
Period size: 55 Copynumber: 3.3 Consensus size: 53
22633691 TAAATTGTAC
* **
22633701 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCGAGTTG-ATATGT
* *
22633754 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGACTATGT
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-TGA-TATGT
* * * *
22633810 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTGATATAT
1 AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTTGATATGT
*
22633863 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22633878 GGCTCAATAT
Statistics
Matches: 107, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
53 19 0.18
54 39 0.36
55 48 0.45
56 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (53 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTTGATATGT
Found at i:22642013 original size:27 final size:27
Alignment explanation
Indices: 22641858--22642013 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
22641848 AAATTGTACA
* *
22641858 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
22641885 GCACTAAGTGTGCGAAAAGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
22641912 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
22641939 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
22641967 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
22641994 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
22642014 ATGAATAGCA
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 82 0.77
28 24 0.23
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:22642024 original size:27 final size:27
Alignment explanation
Indices: 22641857--22642034 Score: 116
Period size: 27 Copynumber: 6.6 Consensus size: 27
22641847 TAAATTGTAC
* *
22641857 AGCACTAAGTGTGCGA-TTCGATTATGT
1 AGCACTAAGTGTGCGAGTT-GAATACGT
* *** *
22641884 TGCACTAAGTGTGCGAAAAGAATATG-
1 AGCACTAAGTGTGCGAGTTGAATACGT
* *
22641910 ATGCACTAAGTGTGCGAATTGACCATGCG-
1 A-GCACTAAGTGTGCGAGTTGA--ATACGT
*
22641939 -GCACTAAGTGTGCGAGTCT-AACTATGT
1 AGCACTAAGTGTGCGAGT-TGAA-TACGT
* *
22641966 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGAATACGT
* *
22641993 GGCACTAAGTGTGCGAGTTGAATGA-AT
1 AGCACTAAGTGTGCGAGTTGAAT-ACGT
*
22642020 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22642035 GGCTCAATAT
Statistics
Matches: 120, Mismatches: 21, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
25 1 0.01
26 2 0.02
27 95 0.79
28 19 0.16
29 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGAATACGT
Found at i:22642025 original size:82 final size:80
Alignment explanation
Indices: 22641856--22642013 Score: 183
Period size: 82 Copynumber: 1.9 Consensus size: 80
22641846 TTAAATTGTA
* * * * *
22641856 CAGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAAGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAAAGAATACGATGCACTAAGT
22641921 GTGCGAATTGACCATG
66 GTGCGAATTGA-CATG
* *** *
22641937 CGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAA
1 CAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAAAGAATACGAT-GCACTAA
*
22642001 GTGTGCGAGTTGA
64 GTGTGCGAATTGA
22642014 ATGAATAGCA
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
81 19 0.30
82 45 0.70
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (80 bp):
CAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAAAGAATACGATGCACTAAGT
GTGCGAATTGACATG
Found at i:22650462 original size:17 final size:17
Alignment explanation
Indices: 22650440--22650475 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
22650430 TAATTAATTT
22650440 ATCCTTTAAAGTATTAA
1 ATCCTTTAAAGTATTAA
22650457 ATCCTTTAAAGTATTAA
1 ATCCTTTAAAGTATTAA
22650474 AT
1 AT
22650476 GCTTCTGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.42
Consensus pattern (17 bp):
ATCCTTTAAAGTATTAA
Found at i:22661639 original size:24 final size:24
Alignment explanation
Indices: 22661603--22661668 Score: 123
Period size: 24 Copynumber: 2.7 Consensus size: 24
22661593 CCTACCCAAT
22661603 CCAACCTCTACACACCATCTCCGTA
1 CCAACC-CTACACACCATCTCCGTA
22661628 CCAACCCTACACACCATCTCCGTA
1 CCAACCCTACACACCATCTCCGTA
22661652 CCAACCCTACACACCAT
1 CCAACCCTACACACCAT
22661669 GTGGGGATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
24 35 0.85
25 6 0.15
ACGTcount: A:0.30, C:0.50, G:0.03, T:0.17
Consensus pattern (24 bp):
CCAACCCTACACACCATCTCCGTA
Found at i:22670703 original size:19 final size:19
Alignment explanation
Indices: 22670679--22670720 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
22670669 AAAAACTCAG
22670679 AATAATAAGATAATAAA-AT
1 AATAATAA-ATAATAAATAT
*
22670698 AATAATAACTAATAAATAT
1 AATAATAAATAATAAATAT
22670717 AATA
1 AATA
22670721 TTGGGCTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
AATAATAAATAATAAATAT
Found at i:22680718 original size:47 final size:47
Alignment explanation
Indices: 22680664--22681260 Score: 942
Period size: 47 Copynumber: 12.6 Consensus size: 47
22680654 TATTTGAATA
22680664 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22680711 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22680758 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22680805 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGTTGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22680854 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
22680901 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22680948 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22680997 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22681044 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22681093 AATGTGAAAGTGTAAATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22681140 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
22681187 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22681234 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22681261 TCCCGAAGGG
Statistics
Matches: 510, Mismatches: 34, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
47 378 0.74
49 132 0.26
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22680856 original size:96 final size:94
Alignment explanation
Indices: 22680664--22681260 Score: 942
Period size: 96 Copynumber: 6.3 Consensus size: 94
22680654 TATTTGAATA
22680664 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
22680729 TGTGATAAGGCCTAATAGCCGATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
* *
22680758 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
* **
22680823 TATGTGATAAGGCCTAATGGCCGTTGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
22680854 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
22680919 TGTGATAAGGTCGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
22680948 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
22681013 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
22681044 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTAAA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
22681109 TATGTGATAAGACCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
22681140 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
22681205 TGTGATAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
* *
22681234 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22681261 TCCCGAAGGG
Statistics
Matches: 469, Mismatches: 30, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
94 197 0.42
96 272 0.58
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:22680920 original size:143 final size:143
Alignment explanation
Indices: 22680664--22681260 Score: 990
Period size: 143 Copynumber: 4.2 Consensus size: 143
22680654 TATTTGAATA
22680664 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
22680727 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
22680792 GGCCAATGTGATG
131 GGCCAATGTGATG
*
22680805 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGTTGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
22680870 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCGAAT
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
22680935 GGCCAATGTGATG
131 GGCCAATGTGATG
22680948 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
22681013 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGA
* *
22681078 ATGGCCGATGTGGTG
129 ATGGCCAATGTGATG
*
22681093 AATGTGAAAGTGTA-A-ATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
22681156 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGT
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
22681221 GGCCAACGTGATG
131 GGCCAATGTGATG
*
22681234 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
22681261 TCCCGAAGGG
Statistics
Matches: 433, Mismatches: 18, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
141 64 0.15
142 2 0.00
143 321 0.74
144 1 0.00
145 45 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCAATGTGATG
Found at i:22682954 original size:40 final size:40
Alignment explanation
Indices: 22682711--22682942 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
22682701 GAGAATTGAG
*
22682711 AGTGATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
22682751 AGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
22682791 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
22682831 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
22682871 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
22682911 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
22682943 ATCATGCTGG
Statistics
Matches: 176, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 176 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:22686990 original size:47 final size:47
Alignment explanation
Indices: 22686936--22687436 Score: 797
Period size: 47 Copynumber: 10.6 Consensus size: 47
22686926 TATTTGAATA
*
22686936 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
22686983 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
22687030 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
22687077 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
22687126 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
22687173 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
22687220 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
22687269 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
22687316 AATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATG
* * * *
22687363 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
22687410 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22687437 TCCCGAAGGG
Statistics
Matches: 424, Mismatches: 24, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
46 2 0.00
47 333 0.79
48 1 0.00
49 88 0.21
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:22687192 original size:143 final size:141
Alignment explanation
Indices: 22686936--22687436 Score: 858
Period size: 143 Copynumber: 3.5 Consensus size: 141
22686926 TATTTGAATA
22686936 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
22687001 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
22687066 CCAATGTGATG
131 CCAATGTGATG
22687077 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
22687142 TATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCGAAT
64 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
22687207 GGCCAATGTGATG
129 GGCCAATGTGATG
*
22687220 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
22687285 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTGAAT
64 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
22687350 GGCCAATGTGATG
129 GGCCAATGTGATG
* * * * * * *
22687363 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
22687428 TGTGATAAG
66 TGTGATAAG
22687437 TCCCGAAGGG
Statistics
Matches: 343, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 66 0.19
143 277 0.81
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:22687287 original size:190 final size:191
Alignment explanation
Indices: 22686936--22687436 Score: 825
Period size: 190 Copynumber: 2.6 Consensus size: 191
22686926 TATTTGAATA
*
22686936 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
22687001 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAAT
22687064 GGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22687126 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
22687191 TGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAAT
* *
22687256 GGCCGATGTGGTGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
22687316 AATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * *
22687380 ATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
22687437 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 15, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
188 10 0.03
189 3 0.01
190 236 0.81
192 44 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (191 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAAT
GGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22689901 original size:26 final size:24
Alignment explanation
Indices: 22689872--22689949 Score: 74
Period size: 23 Copynumber: 3.3 Consensus size: 24
22689862 TCCATGACCG
*
22689872 GTAAGCTCCTCCTGAGCTAATGAATA
1 GTAAGCTCCTACTGAGCTAA--AATA
*
22689898 GTAAGCT-CTATTGAGCTAAAATA
1 GTAAGCTCCTACTGAGCTAAAATA
*
22689921 GTAAGCT-CTA-TCGAGCT-GAATA
1 GTAAGCTCCTACT-GAGCTAAAATA
22689943 GTAAGCT
1 GTAAGCT
22689950 TATGCGAGTT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
22 12 0.25
23 19 0.40
25 10 0.21
26 7 0.15
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (24 bp):
GTAAGCTCCTACTGAGCTAAAATA
Found at i:22689924 original size:23 final size:23
Alignment explanation
Indices: 22689884--22689949 Score: 89
Period size: 23 Copynumber: 2.8 Consensus size: 23
22689874 AAGCTCCTCC
22689884 TGAGCTAATGAATAGTAAGCTCTAT
1 TGAGCTAA--AATAGTAAGCTCTAT
22689909 TGAGCTAAAATAGTAAGCTCTAT
1 TGAGCTAAAATAGTAAGCTCTAT
* *
22689932 CGAGCT-GAATAGTAAGCT
1 TGAGCTAAAATAGTAAGCT
22689950 TATGCGAGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
22 11 0.28
23 20 0.51
25 8 0.21
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (23 bp):
TGAGCTAAAATAGTAAGCTCTAT
Found at i:22689945 original size:22 final size:22
Alignment explanation
Indices: 22689892--22689962 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
22689882 CCTGAGCTAA
*
22689892 TGAATAGTAAGCTCTATTGAGC
1 TGAATAGTAAGCTCTATCGAGC
*
22689914 TAAAATAGTAAGCTCTATCGAGC
1 T-GAATAGTAAGCTCTATCGAGC
*
22689937 TGAATAGTAAGCT-TATGCGAGT
1 TGAATAGTAAGCTCTAT-CGAGC
22689959 TGAA
1 TGAA
22689963 ACGGCAAGCT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.07
22 20 0.47
23 20 0.47
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.30
Consensus pattern (22 bp):
TGAATAGTAAGCTCTATCGAGC
Found at i:22693140 original size:45 final size:44
Alignment explanation
Indices: 22693055--22693140 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 44
22693045 TATGTAATCT
* *
22693055 GAACTCATTGAGTTGTGTCTAAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGTCTAAGTTCATGACATATATGACATCC
* * *
22693099 GAACTTATTGAGTTGTGGTCTGAGTTCATGACATGTATGACA
1 GAACTCATTGAGTTGT-GTCTAAGTTCATGACATATATGACA
22693141 CATGTTTTGG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 15 0.42
45 21 0.58
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (44 bp):
GAACTCATTGAGTTGTGTCTAAGTTCATGACATATATGACATCC
Found at i:22695326 original size:21 final size:21
Alignment explanation
Indices: 22695300--22695342 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
22695290 TAAACCAGGC
* *
22695300 TTTGTATTTTTTTTTCATCAA
1 TTTGTACTTATTTTTCATCAA
22695321 TTTGTACTTATTTTTCATCAA
1 TTTGTACTTATTTTTCATCAA
22695342 T
1 T
22695343 GAAGTATGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.12, G:0.05, T:0.63
Consensus pattern (21 bp):
TTTGTACTTATTTTTCATCAA
Found at i:22702241 original size:39 final size:40
Alignment explanation
Indices: 22702196--22702419 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
22702186 GCTACTCGTT
* *
22702196 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
22702236 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
22702275 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
22702315 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * * *
22702354 CAAATGCCTTC-GGATCTTAGTCAGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
22702395 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
22702420 CATCATTCGA
Statistics
Matches: 159, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 65 0.41
40 81 0.51
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:22702299 original size:79 final size:79
Alignment explanation
Indices: 22702196--22702419 Score: 274
Period size: 79 Copynumber: 2.8 Consensus size: 79
22702186 GCTACTCGTT
* *
22702196 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGA
*
22702261 TTTAGTAACTCACA
66 ATTAGTAACTCACA
*
22702275 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA-CAATGCCTTCGGGACTTAGCCCG
* *
22702338 GAATTAGTATCTCGCA
64 GAATTAGTAACTCACA
* * * * * * *
22702354 CAAATGCCTTC-GGATCTTAGTCAGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCG
22702418 GA
64 GA
22702420 CATCATTCGA
Statistics
Matches: 125, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
78 4 0.03
79 91 0.73
80 30 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCACA
Found at i:22703208 original size:12 final size:12
Alignment explanation
Indices: 22703191--22703220 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
22703181 ATCATCAATC
22703191 CACCATCACATG
1 CACCATCACATG
22703203 CACCATCACATG
1 CACCATCACATG
22703215 CACCAT
1 CACCAT
22703221 TACAAAGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.43, G:0.07, T:0.17
Consensus pattern (12 bp):
CACCATCACATG
Found at i:22703660 original size:55 final size:56
Alignment explanation
Indices: 22703559--22703677 Score: 222
Period size: 55 Copynumber: 2.1 Consensus size: 56
22703549 TATTAGTTTA
22703559 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
22703615 TTGCCCATGCTTCTTATTTTATT-TTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
22703670 TTCCCCAT
1 TTGCCCAT
22703678 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
55 39 0.63
56 23 0.37
ACGTcount: A:0.23, C:0.24, G:0.08, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:22710039 original size:39 final size:40
Alignment explanation
Indices: 22709882--22710106 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
22709872 GCTACTCGTT
* *
22709882 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
22709922 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
22709962 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
22710002 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * * *
22710041 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
22710082 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
22710107 CATCATTCGA
Statistics
Matches: 157, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 110 0.70
41 13 0.08
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:22710090 original size:79 final size:79
Alignment explanation
Indices: 22709882--22710106 Score: 229
Period size: 79 Copynumber: 2.8 Consensus size: 79
22709872 GCTACTCGTT
* * * ** * * *
22709882 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGG
1 CAAATGCCTTCGAGACTTAACCCGAATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
22709947 ATTTAGTAACTCACA
65 AATTAGTAACTCACA
* * * *
22709962 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGAGACTTAACCCGAATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
* *
22710026 AATTAGTATCTCGCA
65 AATTAGTAACTCACA
** * *
22710041 CAAATGCCTTCG-GATCTTAGTCCGAATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGAGA-CTTAACCCGAATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
22710105 GA
64 GA
22710107 CATCATTCGA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
78 2 0.02
79 59 0.48
80 58 0.48
81 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGAGACTTAACCCGAATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCACA
Found at i:22710090 original size:119 final size:120
Alignment explanation
Indices: 22709884--22710106 Score: 274
Period size: 119 Copynumber: 1.9 Consensus size: 120
22709874 TACTCGTTCA
* * *
22709884 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCGAAT
*
22709949 TTAGTAACTCACACAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTCACACAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCACC
* * **
22710004 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCC-TTCGGATCTTAGTCCGA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTTCGGA-CTTAACCCGA
* * * * *
22710066 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTCA-CACAAATGCCTTCGAGACTTAACCCGGA
22710107 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
118 6 0.07
119 63 0.72
120 18 0.21
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCGAAT
ATAGTAACTCACACAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:22711305 original size:56 final size:56
Alignment explanation
Indices: 22711238--22711410 Score: 319
Period size: 56 Copynumber: 3.1 Consensus size: 56
22711228 TATTTTATTT
* *
22711238 CCCATGCTTCTTATTTTATTCTTCCTTTAACACAACATGTTTCATGACTTGTTTTG
1 CCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTG
22711294 CCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTG
1 CCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTG
*
22711350 CCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTTTTG
1 CCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTG
22711406 CCCAT
1 CCCAT
22711411 CATCCCTTGT
Statistics
Matches: 114, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 114 1.00
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.46
Consensus pattern (56 bp):
CCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTG
Found at i:22715511 original size:184 final size:184
Alignment explanation
Indices: 22715202--22715570 Score: 666
Period size: 184 Copynumber: 2.0 Consensus size: 184
22715192 TTCTCTCTGT
22715202 GCACTCTTAGTTTAGTAATTAGTTTAGATAACCAAATCCCTTAATTTTTAGGCTAGACAATAAAA
1 GCACTCTTAGTTTAGTAATTAGTTTAGATAACCAAATCCCTTAATTTTTAGGCTAGACAATAAAA
* *
22715267 AGAAGGTAATTACTAGTACTCTTGGTTCCTTTGGGTTCAACAATTCGGTCCTGCTAAAGCTATAC
66 AGAAGGTAATTACTAGTACTCTTGGTTCCTTTGGGTTCAACAATCCGATCCTGCTAAAGCTATAC
** *
22715332 TACTATTTGATAGGTACACTTGCCTTCATCATGATAATAGTTAGTTTCAAGAAC
131 TACTATTCAATAGGTACACTTGCCTTCATCAGGATAATAGTTAGTTTCAAGAAC
22715386 GCACTCTTAGTTTAGTAATTAGTTTAGATAACCAAATCCCTTAATTTTTAGGCTAGACAATAAAA
1 GCACTCTTAGTTTAGTAATTAGTTTAGATAACCAAATCCCTTAATTTTTAGGCTAGACAATAAAA
*
22715451 AGAAGGTAATTACTAGTACTCTTGGTTCCTTTGGGTTCAACAATCCGATCTTGCTAAAGCTATAC
66 AGAAGGTAATTACTAGTACTCTTGGTTCCTTTGGGTTCAACAATCCGATCCTGCTAAAGCTATAC
* *
22715516 TACTATTCAATAGGTGCACTTTCCTTCATCAGGATAATAGTTAGTTTCAAGAAC
131 TACTATTCAATAGGTACACTTGCCTTCATCAGGATAATAGTTAGTTTCAAGAAC
22715570 G
1 G
22715571 ATTAATTATA
Statistics
Matches: 177, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
184 177 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35
Consensus pattern (184 bp):
GCACTCTTAGTTTAGTAATTAGTTTAGATAACCAAATCCCTTAATTTTTAGGCTAGACAATAAAA
AGAAGGTAATTACTAGTACTCTTGGTTCCTTTGGGTTCAACAATCCGATCCTGCTAAAGCTATAC
TACTATTCAATAGGTACACTTGCCTTCATCAGGATAATAGTTAGTTTCAAGAAC
Found at i:22738232 original size:27 final size:27
Alignment explanation
Indices: 22738193--22738247 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
22738183 TTTCTGAGAT
22738193 AGAAGACTGCTAGAATGGAGGTATAAA
1 AGAAGACTGCTAGAATGGAGGTATAAA
*
22738220 AGAAGACTTCTAGAATGGAGGTATAAA
1 AGAAGACTGCTAGAATGGAGGTATAAA
22738247 A
1 A
22738248 TATACTTCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.45, C:0.07, G:0.27, T:0.20
Consensus pattern (27 bp):
AGAAGACTGCTAGAATGGAGGTATAAA
Found at i:22738915 original size:301 final size:301
Alignment explanation
Indices: 22738366--22739143 Score: 1259
Period size: 301 Copynumber: 2.6 Consensus size: 301
22738356 GTGTGATAAC
* *
22738366 TCTTGAAAAAAGTTATATTTCTAGCATCTAAACTTGATTAAATGTATGTACTTAAATAGATATAT
1 TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
*
22738431 TTTCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATT
66 TTGCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATT
* * * *
22738496 TTATGTTAGTTTTCCTGTTGGGAGAAAGAGAACTGGTTGTTGTATGCAGCAGGTGCAGAAAAGAT
131 TTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTATGCAACAAGTGCAGAAAAGAT
** *
22738561 AAAGAAAATGAGAAAAAGAATAAAAGAAGTGAAATATTGCCATGGCTAAAGGTTGGATGGATTGC
196 AAAGAAAATGAGAAAAAGAATAAAAGAAGTGAAATATTGCCACAGCAAAAGGTTGGATGGATTGC
*
22738626 CAACATAAATGCCATGGCAATTCCAGGATAATGCTGAGAAA
261 CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGAGAAA
* **
22738667 TCTTGAAAAGAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTACATACTTAAGTAGATATAT
1 TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
*
22738732 TTGCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTGTGTCTTGAATGTAATT
66 TTGCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATT
* *
22738797 TTATGTTATTTTTCCTATTGGGAGAAAGAGAATTGGTTGTTGTATGCAATAAGTGCAGAAAAGAT
131 TTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTATGCAACAAGTGCAGAAAAGAT
* * * *
22738862 GAAGAAAATGAGAAAGAGAATAAAGGAAGTGAAATATTGCCACAGCAAAAGGTTGGATGGATTGT
196 AAAGAAAATGAGAAAAAGAATAAAAGAAGTGAAATATTGCCACAGCAAAAGGTTGGATGGATTGC
* *
22738927 CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGATAAC
261 CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGAGAAA
*
22738968 TCTTGAAAAAAGTTATATTTATAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
1 TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
* * * * * *
22739033 TTGCATTTTTAAGTTACTTTTAGAACATTGCATGATAACACTTAGATTTTATCTTAAATGTAATT
66 TTGCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAA-T
* *
22739098 TTTATGTTATTTTTCTTGTTCGGAGAAAGAGAATTGGTTGTTGTAT
130 TTTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTAT
22739144 TGTAACAGCT
Statistics
Matches: 440, Mismatches: 36, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
301 396 0.90
302 44 0.10
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (301 bp):
TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
TTGCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATT
TTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTATGCAACAAGTGCAGAAAAGAT
AAAGAAAATGAGAAAAAGAATAAAAGAAGTGAAATATTGCCACAGCAAAAGGTTGGATGGATTGC
CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGAGAAA
Found at i:22739258 original size:13 final size:13
Alignment explanation
Indices: 22739240--22739264 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22739230 TATGGTTTAC
22739240 GATTTCATGAAAT
1 GATTTCATGAAAT
22739253 GATTTCATGAAA
1 GATTTCATGAAA
22739265 ATTTCATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
GATTTCATGAAAT
Found at i:22740412 original size:49 final size:50
Alignment explanation
Indices: 22740330--22740505 Score: 205
Period size: 52 Copynumber: 3.5 Consensus size: 50
22740320 CTAGTGACTC
* *
22740330 AGTGCGGTACCATGTGAAGGCCACTTTGA-GAAG-AGATAGCTTGGTCACA
1 AGTGTGGTACTATGTGAAGGCCACTTT-ATGAAGAAGATAGCTTGGTCACA
*
22740379 AGTGTGGTACTATGTGAAGGCCACTTTATGAAGAAAAATAGCTTTGGTCACA
1 AGTGTGGTACTATGTGAAGGCCACTTTATGAAG-AAGATAGC-TTGGTCACA
* * * * *
22740431 AGTGTGGTACTATGTGGAGGCCACTTTGTGAAGAAGGTAGCTTTGACTACA
1 AGTGTGGTACTATGTGAAGGCCACTTTATGAAGAAGATAGCTTGGTC-ACA
*
22740482 A-TGGTGGTACTATGTGCAGGCCAC
1 AGT-GTGGTACTATGTGAAGGCCAC
22740506 CGGGTATCCG
Statistics
Matches: 111, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
48 1 0.01
49 29 0.26
50 5 0.05
51 36 0.32
52 40 0.36
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (50 bp):
AGTGTGGTACTATGTGAAGGCCACTTTATGAAGAAGATAGCTTGGTCACA
Found at i:22751113 original size:18 final size:16
Alignment explanation
Indices: 22751039--22751126 Score: 65
Period size: 16 Copynumber: 5.4 Consensus size: 16
22751029 TTATAAATTA
*
22751039 AAAATAAATAATATAT
1 AAAATAAATAATATTT
22751055 AATATATACAAT-ATATTT
1 AA-A-ATA-AATAATATTT
** *
22751073 AATGTAAGTAATATTT
1 AAAATAAATAATATTT
22751089 AAAATAAATAATATTTT
1 AAAATAAATAATA-TTT
*
22751106 ATAAATAAA-AAT-TTG
1 A-AAATAAATAATATTT
22751121 AAAATA
1 AAAATA
22751127 GTATAGAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
14 5 0.09
15 5 0.09
16 20 0.34
17 8 0.14
18 17 0.29
19 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (16 bp):
AAAATAAATAATATTT
Found at i:22751745 original size:20 final size:21
Alignment explanation
Indices: 22751722--22751761 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
22751712 TAGGCCCACC
* *
22751722 GATATTTTTTTATT-TTTTAA
1 GATATATTTATATTGTTTTAA
22751742 GATATATTTATATTGTTTTA
1 GATATATTTATATTGTTTTA
22751762 TTTTAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (21 bp):
GATATATTTATATTGTTTTAA
Found at i:22758768 original size:17 final size:17
Alignment explanation
Indices: 22758743--22758776 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22758733 TGAATTTTGC
22758743 ATTTCGAATAACTCGAA
1 ATTTCGAATAACTCGAA
* *
22758760 ATTTTGAATAATTCGAA
1 ATTTCGAATAACTCGAA
22758777 TAACAAATTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (17 bp):
ATTTCGAATAACTCGAA
Found at i:22762485 original size:14 final size:14
Alignment explanation
Indices: 22762466--22762494 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22762456 TCAACCCTAT
22762466 TAAATTAAGTAACA
1 TAAATTAAGTAACA
22762480 TAAATTAAGTAACA
1 TAAATTAAGTAACA
22762494 T
1 T
22762495 TATTGAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.31
Consensus pattern (14 bp):
TAAATTAAGTAACA
Found at i:22772192 original size:26 final size:26
Alignment explanation
Indices: 22772162--22772213 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
22772152 AGCATGGCCG
22772162 AACCCTAGCTTCAATAATGGCTTCTT
1 AACCCTAGCTTCAATAATGGCTTCTT
22772188 AACCCTAGCTTCAATAATGGCTTCTT
1 AACCCTAGCTTCAATAATGGCTTCTT
22772214 TCTCTTCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
AACCCTAGCTTCAATAATGGCTTCTT
Found at i:22776311 original size:31 final size:31
Alignment explanation
Indices: 22776270--22776333 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
22776260 CCTTTTCATA
*
22776270 TTTCATATTTCATAACACAGGGCCGAAGCCT
1 TTTCAAATTTCATAACACAGGGCCGAAGCCT
** * *
22776301 TTTCAAATTTCATATTACTGGGTCGAAGCCT
1 TTTCAAATTTCATAACACAGGGCCGAAGCCT
22776332 TT
1 TT
22776334 ACTGTAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACAGGGCCGAAGCCT
Found at i:22776576 original size:24 final size:24
Alignment explanation
Indices: 22776540--22776668 Score: 206
Period size: 24 Copynumber: 5.4 Consensus size: 24
22776530 CTGGAGGCCT
*
22776540 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
22776565 AGCCCTTTTAATAACTGGGCCATA
1 AGCCCTTTTAATAACTGGGGCATA
22776589 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
22776612 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
22776636 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
22776660 AGCCCTTTT
1 AGCCCTTTT
22776669 TCACTTCCTC
Statistics
Matches: 99, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
23 22 0.22
24 73 0.74
25 4 0.04
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:22776616 original size:47 final size:48
Alignment explanation
Indices: 22776540--22776668 Score: 206
Period size: 47 Copynumber: 2.7 Consensus size: 48
22776530 CTGGAGGCCT
*
22776540 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGCCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCCATA
* *
22776589 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCCATA
*
22776636 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
22776669 TCACTTCCTC
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
47 44 0.59
48 27 0.36
49 4 0.05
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCCATA
Found at i:22776744 original size:20 final size:20
Alignment explanation
Indices: 22776719--22776783 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
22776709 ATGAATACAG
22776719 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAT
*
22776739 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAT
*
22776759 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
22776779 CATGT
1 CATGT
22776784 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:22776750 original size:11 final size:11
Alignment explanation
Indices: 22776719--22776772 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
22776709 ATGAATACAG
22776719 CATGTGCATAT
1 CATGTGCATAT
*
22776730 CA--TACATAT
1 CATGTGCATAT
22776739 CATGTGCATAT
1 CATGTGCATAT
* *
22776750 CA--TACATGT
1 CATGTGCATAT
22776759 CATGTGCATAT
1 CATGTGCATAT
22776770 CAT
1 CAT
22776773 ACATACCATG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:22782364 original size:35 final size:35
Alignment explanation
Indices: 22782324--22782488 Score: 206
Period size: 35 Copynumber: 4.7 Consensus size: 35
22782314 TCCATGGCAA
*
22782324 AGTTGTGAAACGTAGGTATGGTATCATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
* * *
22782359 AGTTGTGAAACGTAAGTATGGTATTAACCATGCTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
*
22782394 AGTTGTAAAACGTAGGTATGGTATTATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
** * *
22782429 AGTTAAGAAACGTAGGTATGGCATT-TCCCATACCG
1 AGTTGTGAAACGTAGGTATGGTATTAT-CCATACTG
* * *
22782464 AGTTGTAAAATGTAGGTAAGGTATT
1 AGTTGTGAAACGTAGGTATGGTATT
22782489 TCAATGAGAA
Statistics
Matches: 110, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
34 1 0.01
35 109 0.99
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.32
Consensus pattern (35 bp):
AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
Found at i:22784916 original size:36 final size:38
Alignment explanation
Indices: 22784830--22784917 Score: 117
Period size: 40 Copynumber: 2.3 Consensus size: 38
22784820 AAAACATAAA
* **
22784830 AAAAAAAAAGAAAGCCATGCATTTGTACCTTGTTGTTGCC
1 AAAATAAAAGAAAGCCATGCATTCATACC-T-TTGTTGCC
22784870 AAAATAAAAGAAAGCCATGCATTCATACC-TTGTTG-C
1 AAAATAAAAGAAAGCCATGCATTCATACCTTTGTTGCC
22784906 AAAATAAAAGAA
1 AAAATAAAAGAA
22784918 GAAAGAAAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
36 13 0.29
37 6 0.13
40 26 0.58
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.24
Consensus pattern (38 bp):
AAAATAAAAGAAAGCCATGCATTCATACCTTTGTTGCC
Found at i:22789072 original size:16 final size:16
Alignment explanation
Indices: 22789047--22789077 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22789037 TATTGATTTC
22789047 ATATTATTCTATGTAA
1 ATATTATTCTATGTAA
*
22789063 ATATTTTTCTATGTA
1 ATATTATTCTATGTA
22789078 TGTATATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (16 bp):
ATATTATTCTATGTAA
Found at i:22789211 original size:17 final size:17
Alignment explanation
Indices: 22789182--22789214 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22789172 TTTCATATAT
*
22789182 TATTATCTTTATGTATG
1 TATTATCTATATGTATG
22789199 TATTATCTATATGTAT
1 TATTATCTATATGTAT
22789215 CATTAATCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (17 bp):
TATTATCTATATGTATG
Found at i:22789552 original size:12 final size:12
Alignment explanation
Indices: 22789535--22789577 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
22789525 TTCTTAGGAT
22789535 TATATTTTATTA
1 TATATTTTATTA
**
22789547 TATATTTT-TGC
1 TATATTTTATTA
22789558 TATATTTTATTA
1 TATATTTTATTA
*
22789570 TGTATTTT
1 TATATTTT
22789578 TGCTATCCTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (12 bp):
TATATTTTATTA
Found at i:22789561 original size:23 final size:23
Alignment explanation
Indices: 22789535--22789583 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
22789525 TTCTTAGGAT
22789535 TATATTTTATTATATATTTTTGC
1 TATATTTTATTATATATTTTTGC
*
22789558 TATATTTTATTATGTATTTTTGC
1 TATATTTTATTATATATTTTTGC
22789581 TAT
1 TAT
22789584 CCTTTCATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.65
Consensus pattern (23 bp):
TATATTTTATTATATATTTTTGC
Found at i:22791027 original size:24 final size:24
Alignment explanation
Indices: 22790995--22791044 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
22790985 ACCAATAATT
22790995 AATTAAATGTCCTGTTATAGTCCA
1 AATTAAATGTCCTGTTATAGTCCA
22791019 AATTAAATGTCCTGTTATAGTCCA
1 AATTAAATGTCCTGTTATAGTCCA
22791043 AA
1 AA
22791045 GCCCAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (24 bp):
AATTAAATGTCCTGTTATAGTCCA
Found at i:22793527 original size:28 final size:28
Alignment explanation
Indices: 22793495--22793550 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
22793485 TGCATGATCG
22793495 AAATTGAGTTATATTTCCAAGTTAGTTA
1 AAATTGAGTTATATTTCCAAGTTAGTTA
22793523 AAATTGAGTTATATTTCCAAGTTAGTTA
1 AAATTGAGTTATATTTCCAAGTTAGTTA
22793551 TACTTAGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (28 bp):
AAATTGAGTTATATTTCCAAGTTAGTTA
Found at i:22793944 original size:131 final size:128
Alignment explanation
Indices: 22793761--22794147 Score: 427
Period size: 131 Copynumber: 2.9 Consensus size: 128
22793751 TTCACAATTA
* * * *
22793761 TTTAAGAATTCTTTAAAATGAAGGCGATATTCGATATTTGGTAATTCGCGGAATCGTGCCCTAAC
1 TTTAAAAATTCTTT-AAACGAAGGCGATATTCGATATTTGGCAATTC-CGGAATCGTGCCCTATC
* *
22793826 ATGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATGT
64 GTGTTGGGTTGCAATTTCTCGTTTG-TCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATGT
22793891 CT
128 -T
* *
22793893 TTTAATAATTCTTTAAACGAAGGCGATGTTCGATATTTGGCAATTCACGGAATCGTGCCCTATCG
1 TTTAAAAATTCTTTAAACGAAGGCGATATTCGATATTTGGCAATTC-CGGAATCGTGCCCTATCG
* * * * **
22793958 TGCTGGGTTGCAATTTCTCATTTGTTCAAAATAATCAAAGGTCCCTTTTGAATTTCACTTATGTT
65 TGTTGGGTTGCAATTTCTCGTTTG-TCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATGTT
* * * ** * *
22794023 TTCTAAAAACTCTTCAAAACAAAGGTAATATTCGATGTTTGGCAATTCGGAGAATCGTGCCCTAT
1 TT-TAAAAATTCTT-TAAACGAAGGCGATATTCGATATTTGGCAATTCCG-GAATCGTGCCCTAT
* * * *
22794088 CGT-TCTGGGTTTCAATTTC-CTGTTTGTCCAAAATGATCGAAGATTCCTTTAGAATTTCAC
63 CGTGT-TGGGTTGCAATTTCTC-GTTTGT-CAAAATAATCGAAGGTCCCTTTAGAATTTCAC
22794148 TCATACTCTC
Statistics
Matches: 217, Mismatches: 32, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
130 3 0.01
131 113 0.52
132 101 0.47
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (128 bp):
TTTAAAAATTCTTTAAACGAAGGCGATATTCGATATTTGGCAATTCCGGAATCGTGCCCTATCGT
GTTGGGTTGCAATTTCTCGTTTGTCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATGTT
Found at i:22806507 original size:130 final size:130
Alignment explanation
Indices: 22806256--22806641 Score: 459
Period size: 131 Copynumber: 2.9 Consensus size: 130
22806246 TTCACTATTA
* * * * *
22806256 TTTAAGAATTCTTTAAAACGAAGGCGATATTCGATATTTGGCAATTCGCAAAATCGTGCCCTAAC
1 TTTAAAAATTCTTT-AAACGAAGGCGATATTCGATATTTGGCAATTCACAGAATCGTGACCTATC
* * *
22806321 GTGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGTATTTCACCCATGT
65 GTGTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATGT
22806386 CT
130 -T
* * *
22806388 TTTAATAATTGTTTAAACGAAGGCGATGTTCGATATTTGGCAATTCACAGAATCGTG-CCTATCG
1 TTTAAAAATTCTTTAAACGAAGGCGATATTCGATATTTGGCAATTCACAGAATCGTGACCTATCG
* * **
22806452 TGTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCAAAGGTCCCTTTTGAATTTCACTTATGTT
66 TGTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATGTT
* * ** * * *
22806517 TTCTAAAAACTCTTCAAAACGAAGGTAATATTCGATGTTTGGCAATTCAGAGAATCGTGAGCTAT
1 TT-TAAAAATTCTT-TAAACGAAGGCGATATTCGATATTTGGCAATTCACAGAATCGTGACCTAT
* * * * * * * *
22806582 CGTGCTGGGTTGCGATTTCTTGCTTGTCCAAAATGATCGAAGATTCCTTTAGAATTTCAC
64 CGTGTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCAC
22806642 TCATACTCTC
Statistics
Matches: 218, Mismatches: 33, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
129 3 0.01
130 71 0.33
131 78 0.36
132 66 0.30
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (130 bp):
TTTAAAAATTCTTTAAACGAAGGCGATATTCGATATTTGGCAATTCACAGAATCGTGACCTATCG
TGTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACCCATGTT
Found at i:22810569 original size:179 final size:179
Alignment explanation
Indices: 22810269--22810629 Score: 686
Period size: 179 Copynumber: 2.0 Consensus size: 179
22810259 ATTCCAACTT
22810269 CAACTCAGATTCTTTACTACTCAACACGAAAGCAAGGTAGGCTTCATATCCTTTTCTCATATACC
1 CAACTCAGATTCTTTACTACTCAACACGAAAGCAAGGTAGGCTTCATATCCTTTTCTCATATACC
*
22810334 TTTGAGCCATCATTGAGGTAATTACAACCGACGGAGTATTCAACTCACTTGAATCAATCCGGAGA
66 TTTGAGCCATCATTGAGGTAATCACAACCGACGGAGTATTCAACTCACTTGAATCAATCCGGAGA
22810399 ATCTCACCATCTGAGAATTTCAATTCGATATACTTGCTACCACAATTTA
131 ATCTCACCATCTGAGAATTTCAATTCGATATACTTGCTACCACAATTTA
22810448 CAACTCAGATTCTTTACTACTCAACACGAAAGCAAGGTAGGCTTCATATCCTTTTCTCATATACC
1 CAACTCAGATTCTTTACTACTCAACACGAAAGCAAGGTAGGCTTCATATCCTTTTCTCATATACC
*
22810513 TTTGAGCCATCATTGAGGTAATCACAACTGACGGAGTATTCAACTCACTTGAATCAATCCGGAGA
66 TTTGAGCCATCATTGAGGTAATCACAACCGACGGAGTATTCAACTCACTTGAATCAATCCGGAGA
* *
22810578 ATCTTACCATCTGAGCATTTCAATTCGATATACTTGCTACCACAATTTA
131 ATCTCACCATCTGAGAATTTCAATTCGATATACTTGCTACCACAATTTA
22810627 CAA
1 CAA
22810630 TCACATCATG
Statistics
Matches: 178, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
179 178 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (179 bp):
CAACTCAGATTCTTTACTACTCAACACGAAAGCAAGGTAGGCTTCATATCCTTTTCTCATATACC
TTTGAGCCATCATTGAGGTAATCACAACCGACGGAGTATTCAACTCACTTGAATCAATCCGGAGA
ATCTCACCATCTGAGAATTTCAATTCGATATACTTGCTACCACAATTTA
Found at i:22816456 original size:22 final size:21
Alignment explanation
Indices: 22816415--22816458 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
22816405 TTACAAAAAA
*
22816415 TATCGATACCATTTTAGTAGG
1 TATCGATACCATTCTAGTAGG
22816436 TATCGATACTCATTGCT-GTAGG
1 TATCGATAC-CATT-CTAGTAGG
22816458 T
1 T
22816459 GAAGTTAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 9 0.45
22 10 0.50
23 1 0.05
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (21 bp):
TATCGATACCATTCTAGTAGG
Found at i:22820421 original size:48 final size:47
Alignment explanation
Indices: 22820377--22820505 Score: 195
Period size: 48 Copynumber: 2.7 Consensus size: 47
22820367 CTCATATCGG
*
22820377 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
* *
22820424 TCGCCGAAGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC-A
* *
22820473 CGCCGATACCATGTCCCAGACATGGTCTTACAC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACAC
22820506 GTTATCTCAT
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 1 0.01
48 72 0.97
49 1 0.01
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
Found at i:22824126 original size:15 final size:15
Alignment explanation
Indices: 22824103--22824132 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22824093 TTATCTTTCA
22824103 CATACACATAACTCC
1 CATACACATAACTCC
*
22824118 CATATACATAACTCC
1 CATACACATAACTCC
22824133 TAACTAGGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.23
Consensus pattern (15 bp):
CATACACATAACTCC
Found at i:22832084 original size:17 final size:18
Alignment explanation
Indices: 22832048--22832082 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22832038 CCGGCGCCCC
22832048 CTCTCTCCTTTCCTTTTT
1 CTCTCTCCTTTCCTTTTT
*
22832066 CTCTCTCTTTTCCTTTT
1 CTCTCTCCTTTCCTTTT
22832083 CTTTTCTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (18 bp):
CTCTCTCCTTTCCTTTTT
Found at i:22832787 original size:25 final size:25
Alignment explanation
Indices: 22832734--22832801 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
22832724 TTTCTTTCTT
* * *
22832734 TTTAAGTTTTTATTTATTT-ACTTTT
1 TTTAAGTTTTT-TTTATTTGTCCTTA
22832759 TTTAAGTTTTTTTTATTTGTCCTTA
1 TTTAAGTTTTTTTTATTTGTCCTTA
*
22832784 TTT-A-TTTTATTTATTTGT
1 TTTAAGTTTTTTTTATTTGT
22832802 TTATTATTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.34
24 8 0.21
25 17 0.45
ACGTcount: A:0.18, C:0.04, G:0.06, T:0.72
Consensus pattern (25 bp):
TTTAAGTTTTTTTTATTTGTCCTTA
Found at i:22832814 original size:24 final size:23
Alignment explanation
Indices: 22832741--22832816 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 23
22832731 CTTTTTAAGT
*
22832741 TTTTATTTATTTACTTTTT-TTAA
1 TTTTATTTATTT-GTTTTTATTAA
* ** *
22832764 GTTTTTTTTATTTGTCCTTATTTA
1 -TTTTATTTATTTGTTTTTATTAA
22832788 TTTTATTTATTTGTTTATTATTAA
1 TTTTATTTATTTGTTT-TTATTAA
22832812 TTTTA
1 TTTTA
22832817 AAAAATTTGA
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
23 16 0.39
24 25 0.61
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.72
Consensus pattern (23 bp):
TTTTATTTATTTGTTTTTATTAA
Found at i:22832874 original size:21 final size:21
Alignment explanation
Indices: 22832818--22832889 Score: 72
Period size: 22 Copynumber: 3.3 Consensus size: 21
22832808 TTAATTTTAA
* * *
22832818 AAAATTTGAAATATATATTTG
1 AAAATTTTAAATATATTTTTT
*
22832839 AAATGTTTTATAATATATTTTTT
1 AAA-ATTTTA-AATATATTTTTT
*
22832862 AAAATTTTAAATATATATTCTT
1 AAAATTTTAAATATAT-TTTTT
22832884 AAAATT
1 AAAATT
22832890 ATTTTTTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
21 10 0.24
22 19 0.45
23 13 0.31
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.50
Consensus pattern (21 bp):
AAAATTTTAAATATATTTTTT
Found at i:22832902 original size:35 final size:35
Alignment explanation
Indices: 22832854--22832924 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
22832844 TTTTATAATA
22832854 TATTTTTTAAAATTTTAAATATATATTCTT-AAAAT
1 TATTTTTTAAAATTTTAAATAT-TATTCTTGAAAAT
* *
22832889 TATTTTTTTAAATTTTAAATATTATTTTTGAAAAT
1 TATTTTTTAAAATTTTAAATATTATTCTTGAAAAT
22832924 T
1 T
22832925 TAAATATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 6 0.18
35 27 0.82
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (35 bp):
TATTTTTTAAAATTTTAAATATTATTCTTGAAAAT
Found at i:22832916 original size:21 final size:21
Alignment explanation
Indices: 22832882--22832949 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
22832872 ATATATATTC
*
22832882 TTAAA-ATTATTTTTTTAAATT
1 TTAAATATTA-TTTTTTAAAAT
*
22832903 TTAAATATTATTTTTGAAAAT
1 TTAAATATTATTTTTTAAAAT
*
22832924 TTAAATA-TATTGTTTAATAAT
1 TTAAATATTATTTTTTAA-AAT
*
22832945 ATAAA
1 TTAAA
22832950 ACATTTAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 8 0.20
21 28 0.70
22 4 0.10
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (21 bp):
TTAAATATTATTTTTTAAAAT
Found at i:22833058 original size:10 final size:9
Alignment explanation
Indices: 22832995--22833054 Score: 52
Period size: 10 Copynumber: 6.4 Consensus size: 9
22832985 TTATTATTAG
22832995 TTTTATAATA
1 TTTTA-AATA
22833005 TTTTAAATA
1 TTTTAAATA
22833014 --TTAAATA
1 TTTTAAATA
* *
22833021 TTTTTAATTTG
1 -TTTTAA-ATA
22833032 TTTTATAATA
1 TTTTA-AATA
22833042 TTTTAAATA
1 TTTTAAATA
22833051 TTTT
1 TTTT
22833055 TAAAATATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
7 7 0.17
9 12 0.29
10 20 0.49
11 2 0.05
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTAAATA
Found at i:22833154 original size:30 final size:29
Alignment explanation
Indices: 22833102--22833190 Score: 74
Period size: 30 Copynumber: 2.9 Consensus size: 29
22833092 TTATTTTTTA
** *
22833102 TAATATTTTAAATGCATATTTTAAATATTTT
1 TAAT-TTTTAAATTAAT-TTTTAAATATTAT
22833133 CTAA-TTTTAAATATAATTTTTATAA-ATTAT
1 -TAATTTTTAAAT-TAATTTTTA-AATATTAT
*
22833163 TAATTTTTAAATTAATTTTAAAGATATT
1 TAATTTTTAAATTAATTTTTAA-ATATT
22833191 CAAAAGTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
28 1 0.02
29 12 0.25
30 28 0.58
31 4 0.08
32 3 0.06
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (29 bp):
TAATTTTTAAATTAATTTTTAAATATTAT
Found at i:22834607 original size:13 final size:14
Alignment explanation
Indices: 22834565--22834609 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
22834555 AATAAATGAT
22834565 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
22834580 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
22834593 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
22834606 TAAA
1 TAAA
22834610 ACAAATAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Done.